Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ALOX5	240	genome.wustl.edu	37	10	45878089	45878089	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	10	45878089	45878089	G	A	SNP	ALOX5	NM_000698.2	human	genbank	58_37c	+1	reviewed	nonsense	c.309	p.W103*	1.000	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_2,PatternScan_LIPOXYGENASE_1,superfamily_Lipoxygenase	-	no_errors
C9orf144B	0	genome.wustl.edu	37	9	34723329	34723329	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	9	34723329	34723329	G	A	SNP	C9orf144B	NM_001141917.1	human	genbank	58_37c	-1	validated	missense	c.3908	p.S1303F	0.029	NULL	NULL	-	no_errors
G6PC2	57818	genome.wustl.edu	37	2	169757925	169757925	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	2	169757925	169757925	T	A	SNP	G6PC2	NM_021176.2	human	genbank	58_37c	+1	reviewed	missense	c.84	p.F28L	1.000	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase	HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase	-	no_errors
INTS10	55174	genome.wustl.edu	37	8	19679949	19679949	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	8	19679949	19679949	G	A	SNP	INTS10	NM_018142.2	human	genbank	58_37c	+1	validated	splice_site	c.442-1	e5-1	1.000	-	-	-	no_errors
KCNH7	90134	genome.wustl.edu	37	2	163302895	163302895	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	2	163302895	163302895	T	C	SNP	KCNH7	NM_033272.2	human	genbank	58_37c	-1	reviewed	missense	c.1187	p.N396S	1.000	NULL	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels	-	no_errors
LOC100287294	0	genome.wustl.edu	37	7	57011894	57011894	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	7	57011894	57011894	G	T	SNP	LOC100287294	XM_002342726.1	human	genbank	58_37c	-1	model	missense	c.167	p.T56N	0.121	NULL	NULL	-	no_errors
NCSTN	23385	genome.wustl.edu	37	1	160323977	160323977	+	Missense_Mutation	SNP	A	A	G	rs143039637	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	1	160323977	160323977	A	G	SNP	NCSTN	NM_015331.2	human	genbank	58_37c	+1	reviewed	missense	c.1249	p.N417D	0.000	HMMPfam_Nicastrin,superfamily_Zn-dependent exopeptidases	HMMPfam_Nicastrin,PatternScan_WD_REPEATS_1,superfamily_Zn-dependent exopeptidases	-	no_errors
PGBD2	267002	genome.wustl.edu	37	1	249210906	249210906	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	1	249210906	249210906	G	A	SNP	PGBD2	NM_170725.2	human	genbank	58_37c	+1	validated	silent	c.123	p.E41	0.748	NULL	NULL	-	no_errors
PGR	5241	genome.wustl.edu	37	11	100996740	100996741	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	11	100996740	100996741	-	C	INS	PGR	NM_000926.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1787_1786	p.E596fs	1.000:1.000	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Prog_receptor,HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936094	178936094	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	3	178936094	178936094	C	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1636	p.Q546K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLXNA1	5361	genome.wustl.edu	37	3	126752825	126752825	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	3	126752825	126752825	G	A	SNP	PLXNA1	NM_032242.3	human	genbank	58_37c	+1	validated	missense	c.5587	p.E1863K	1.000	NULL	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00423,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl,superfamily_E set domains,superfamily_Plexin repeat	-	no_errors
PRSS42	0	genome.wustl.edu	37	3	46873464	46873464	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	3	46873464	46873464	A	G	SNP	PRSS42	NM_182702.1	human	genbank	58_37c	-1	provisional	missense	c.694	p.C232R	0.599	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
S1PR3	1903	genome.wustl.edu	37	9	91616760	91616760	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	9	91616760	91616760	C	T	SNP	S1PR3	NM_005226.2	human	genbank	58_37c	+1	reviewed	silent	c.645	p.Y215	0.961	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
SH3BP4	23677	genome.wustl.edu	37	2	235950945	235950945	+	Missense_Mutation	SNP	G	G	A	rs35521640	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	2	235950945	235950945	G	A	SNP	SH3BP4	NM_014521.2	human	genbank	58_37c	+1	reviewed	missense	c.1532	p.R511H	0.998	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2	-	no_errors
STOX1	219736	genome.wustl.edu	37	10	70644128	70644128	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	10	70644128	70644128	C	T	SNP	STOX1	NM_001130161.2	human	genbank	58_37c	+1	reviewed	silent	c.576	p.Y192	1.000	NULL	HMMPfam_Stork_head	-	no_errors
TRMT2B	79979	genome.wustl.edu	37	X	100275554	100275554	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	X	100275554	100275554	G	A	SNP	TRMT2B	NM_024917.5	human	genbank	58_37c	-1	reviewed	nonsense	c.1090	p.Q364*	0.184	HMMPfam_MTS,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_MTS,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
VSIG8	391123	genome.wustl.edu	37	1	159828534	159828534	+	Missense_Mutation	SNP	C	C	T	rs141528275	byFrequency	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a53056d9-e8bd-4cb1-ad67-85879ccc925d	30586533-e188-4eb3-8ffd-0ce7c98a1b6b	1	159828534	159828534	C	T	SNP	VSIG8	NM_001013661.1	human	genbank	58_37c	-1	provisional	missense	c.218	p.R73Q	0.053	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
