Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
NOC2L	26155	genome.wustl.edu	37	1	892328	892328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015658.3	-1	validated	p.K144N	0.025	360	0%	415	21.9%	73	36.9%	benign(0.313)	tolerated(0.13)	neutral(0.350)	NULL
AGRN	375790	genome.wustl.edu	37	1	957623	957623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198576.2	+1	validated	p.R82W	0.985	83	0%	144	25%	34	32.3%	probably_damaging(0.985)	deleterious(0.04)	deleterious(0.781)	HMMPfam_NtA,superfamily_TIMP_like
AGRN	375790	genome.wustl.edu	37	1	984707	984707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198576.2	+1	validated	p.R1464C	1.000	35	0%	31	22.6%	150	56.6%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
FAM132A	388581	genome.wustl.edu	37	1	1178290	1178290	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014980.1	-1	provisional	p.C245	1.000	28	0%	42	16.7%	1	100%	-	-	-	superfamily_TNF_like
CPSF3L	54973	genome.wustl.edu	37	1	1247456	1247456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017871.4	-1	validated	p.A560V	0.996	47	0%	54	24.1%	197	41.6%	benign(0)	tolerated(1)	-	NULL
CPSF3L	54973	genome.wustl.edu	37	1	1254650	1254650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000429572	-1	known	p.A152V	0.003	69	0%	89	23.6%	12	58.3%	unknown(0)	deleterious(0.03)	-	NULL
LOC100288202	100288202	genome.wustl.edu	37	1	1289151	1289151	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342019.1	+1	model	p.C62	0.000	18	0%	23	34.8%	3	0%	-	-	-	NULL
CCNL2	81669	genome.wustl.edu	37	1	1326184	1326184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030937.4	-1	validated	p.A241T	1.000	92	0%	114	19.3%	54	35.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00385,superfamily_Cyclin-like
ATAD3C	219293	genome.wustl.edu	37	1	1391686	1391686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039211.2	+1	validated	p.A216T	0.999	126	0%	123	17.1%	27	0%	benign(0.004)	tolerated(0.08)	neutral(0.300)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
ATAD3B	83858	genome.wustl.edu	37	1	1417592	1417592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031921.4	+1	provisional	p.A197T	1.000	26	0%	24	33.3%	18	61.1%	probably_damaging(0.958)	deleterious(0.04)	deleterious(0.750)	NULL
ATAD3B	83858	genome.wustl.edu	37	1	1421191	1421191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031921.4	+1	provisional	p.Q312H	1.000	285	0%	212	21.2%	17	47%	possibly_damaging(0.886)	tolerated(0.11)	deleterious(0.618)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATAD3B	83858	genome.wustl.edu	37	1	1421959	1421959	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031921.4	+1	provisional	p.I375	1.000	188	0%	197	19.3%	25	16%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SSU72	29101	genome.wustl.edu	37	1	1499982	1499982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000359060	-1	known	p.L132S	0.015	47	0%	44	22.7%	6	0%	benign(0.02)	-	-	HMMPfam_Ssu72
MIB2	142678	genome.wustl.edu	37	1	1560705	1560705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080875.2	+1	validated	p.S312I	0.936	36	0%	37	43.2%	28	32.1%	possibly_damaging(0.905)	tolerated(0.12)	deleterious(0.620)	NULL
CDK11A	728642	genome.wustl.edu	37	1	1654209	1654209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024011.2	-1	reviewed	p.L17F	1.000	724	0%	859	15.7%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CALML6	163688	genome.wustl.edu	37	1	1848297	1848297	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138705.2	+1	validated	p.D120	1.000	128	0%	125	24%	0	-	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
TMEM52	339456	genome.wustl.edu	37	1	1849331	1849331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178545.3	-1	validated	p.G207D	0.000	228	0%	261	22.6%	1	0%	probably_damaging(0.998)	-	-	NULL
TMEM52	339456	genome.wustl.edu	37	1	1849767	1849767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178545.3	-1	validated	p.P92T	0.006	38	0%	40	30%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIAA1751	85452	genome.wustl.edu	37	1	1887080	1887080	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080484.1	-1	predicted	p.L742	0.010	38	0%	41	39%	0	-	-	-	-	NULL
KIAA1751	85452	genome.wustl.edu	37	1	1896346	1896346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080484.1	-1	predicted	p.P519L	0.979	46	0%	39	17.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1751	85452	genome.wustl.edu	37	1	1902218	1902218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080484.1	-1	predicted	p.K309T	0.573	69	0%	67	13.4%	0	-	possibly_damaging(0.701)	tolerated(0.18)	neutral(0.308)	NULL
KIAA1751	85452	genome.wustl.edu	37	1	1918418	1918418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080484.1	-1	predicted	p.A118D	0.001	15	0%	23	52.2%	1	100%	benign(0.047)	tolerated(0.09)	neutral(0.299)	NULL
GABRD	2563	genome.wustl.edu	37	1	1960629	1960629	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000815.4	+1	reviewed	p.P257	0.999	72	0%	109	16.5%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
PRKCZ	5590	genome.wustl.edu	37	1	1987971	1987971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002744.4	+1	reviewed	p.R81H	1.000	113	0%	182	22.5%	20	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PB1,HMMSmart_PB1,superfamily_SSF54277
MORN1	79906	genome.wustl.edu	37	1	2303982	2303982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024848.1	-1	provisional	p.A228V	0.000	152	0%	140	23.6%	6	50%	benign(0.005)	tolerated(0.54)	neutral(0.007)	NULL
PEX10	5192	genome.wustl.edu	37	1	2338299	2338299	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153818.1	-1	reviewed	p.R232	0.001	34	0%	42	31%	36	44.4%	-	-	-	HMMPfam_Pex2_Pex12
PLCH2	9651	genome.wustl.edu	37	1	2418808	2418808	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014638.2	+1	provisional	p.C369	0.645	76	0%	83	25.3%	0	-	-	-	-	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
PANK4	55229	genome.wustl.edu	37	1	2441347	2441347	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018216.1	-1	reviewed	p.L688	0.995	76	0%	73	27.4%	45	46.6%	-	-	-	HMMPfam_DUF89,superfamily_Hypothetical protein At2g17340
PANK4	55229	genome.wustl.edu	37	1	2450616	2450616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018216.1	-1	reviewed	p.R334H	1.000	59	0%	61	26.2%	19	47.3%	benign(0.001)	tolerated(0.82)	neutral(0.001)	HMMPfam_Fumble
TNFRSF14	8764	genome.wustl.edu	37	1	2489852	2489852	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003820.2	+1	reviewed	p.Y83	0.746	71	0%	82	29.3%	228	33.7%	-	-	-	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
MMEL1	79258	genome.wustl.edu	37	1	2537720	2537720	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033467.3	-1	reviewed	p.N230	0.242	56	0%	48	33.3%	0	-	-	-	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
TPRG1L	127262	genome.wustl.edu	37	1	3542047	3542047	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182752.3	+1	validated	p.D87	1.000	41	0%	24	37.5%	12	41.6%	-	-	-	PatternScan_LIPOCALIN
TP73	7161	genome.wustl.edu	37	1	3638670	3638670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005427.2	+1	reviewed	p.G172V	1.000	241	0.4%	182	22.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_P53
CCDC27	148870	genome.wustl.edu	37	1	3670736	3670736	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152492.2	+1	validated	p.R125*	0.000	111	0%	102	22.5%	1	0%	-	-	-	NULL
CCDC27	148870	genome.wustl.edu	37	1	3673399	3673399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152492.2	+1	validated	p.S219Y	0.000	65	0%	60	20%	0	-	possibly_damaging(0.449)	tolerated(0.06)	deleterious(0.470)	NULL
CCDC27	148870	genome.wustl.edu	37	1	3679808	3679808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152492.2	+1	validated	p.S364Y	0.000	350	0%	269	22.7%	0	-	benign(0.053)	tolerated(0.11)	neutral(0.275)	NULL
LRRC47	57470	genome.wustl.edu	37	1	3698151	3698151	+	Silent	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020710.2	-1	validated	p.T476	0.000	195	0%	235	22.6%	61	47.5%	-	-	-	HMMPfam_B3_4
LRRC47	57470	genome.wustl.edu	37	1	3701727	3701727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020710.2	-1	validated	p.A373V	1.000	107	0%	111	9.9%	70	17.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_B3_4
CEP104	9731	genome.wustl.edu	37	1	3731982	3731982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014704.3	-1	validated	p.T921M	0.912	114	0%	118	16.9%	32	40.6%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
CEP104	9731	genome.wustl.edu	37	1	3753085	3753085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014704.3	-1	validated	p.A431T	0.946	153	0%	112	26.8%	19	47.3%	benign(0.02)	tolerated(0.05)	neutral(0.346)	NULL
CEP104	9731	genome.wustl.edu	37	1	3755567	3755567	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014704.3	-1	validated	p.Y284	0.997	183	0.5%	111	18.9%	14	50%	-	-	-	NULL
DFFB	1677	genome.wustl.edu	37	1	3775293	3775293	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004402.2	+1	reviewed	p.R42	0.001	81	0%	143	25.2%	0	-	-	-	-	HMMPfam_CIDE-N,HMMSmart_SM00266,superfamily_CAD  PB1 domains
NPHP4	261734	genome.wustl.edu	37	1	5940215	5940215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015102.2	-1	reviewed	p.R857H	0.001	185	0.5%	145	24.8%	8	25%	benign(0.002)	tolerated(0.56)	neutral(0.006)	NULL
CHD5	26038	genome.wustl.edu	37	1	6169879	6169879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015557.1	-1	provisional	p.P1852S	1.000	58	0%	74	12.2%	0	-	possibly_damaging(0.95)	deleterious(0.04)	deleterious(0.742)	HMMPfam_CHDCT2
CHD5	26038	genome.wustl.edu	37	1	6206794	6206794	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015557.1	-1	provisional	p.P507	0.001	51	0%	80	25%	1	0%	-	-	-	HMMSmart_CHROMO,superfamily_Chromodomain-like
CHD5	26038	genome.wustl.edu	37	1	6209115	6209115	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015557.1	-1	provisional	p.W394*	1.000	62	0%	51	23.5%	0	-	-	-	-	superfamily_FYVE_PHD_ZnF
RNF207	388591	genome.wustl.edu	37	1	6270289	6270289	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207396.2	+1	validated	p.Y269	0.886	109	0%	119	23.5%	7	57.1%	-	-	-	NULL
RNF207	388591	genome.wustl.edu	37	1	6272336	6272336	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207396.2	+1	validated	p.L448	0.896	69	0%	104	27.9%	10	50%	-	-	-	NULL
LINC00337	148645	genome.wustl.edu	37	1	6298735	6298735	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_040930.2	+1	model	NULL	0.000	135	0%	141	17.7%	1	0%	-	-	-	-
GPR153	387509	genome.wustl.edu	37	1	6314702	6314702	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207370.2	-1	validated	p.S88	1.000	301	0.3%	212	22.2%	5	20%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ACOT7	11332	genome.wustl.edu	37	1	6393544	6393544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181864.2	-1	reviewed	p.P178H	1.000	296	0%	224	12.5%	117	27.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Thioesterase/thiol ester dehydrase-isomerase
NOL9	79707	genome.wustl.edu	37	1	6586041	6586041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024654.4	-1	validated	p.P661H	0.996	391	0%	193	21.2%	25	36%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAS1R1	80835	genome.wustl.edu	37	1	6639591	6639591	+	Nonsense_Mutation	SNP	G	G	T	rs143210457	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138697.3	+1	reviewed	p.E825*	0.638	103	0%	98	24.5%	0	-	-	-	-	NULL
KLHL21	9903	genome.wustl.edu	37	1	6659480	6659480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014851.2	-1	provisional	p.V352M	1.000	57	0%	65	18.5%	18	44.4%	probably_damaging(0.991)	tolerated(0.21)	deleterious(0.488)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
PHF13	148479	genome.wustl.edu	37	1	6680096	6680096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153812.2	+1	validated	p.R125S	1.000	58	0%	77	20.8%	9	22.2%	possibly_damaging(0.793)	deleterious(0.02)	deleterious(0.681)	NULL
CAMTA1	23261	genome.wustl.edu	37	1	7724013	7724013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015215.1	+1	validated	p.T469N	1.000	97	0%	89	23.6%	0	-	probably_damaging(0.955)	tolerated(0.44)	neutral(0.411)	NULL
CAMTA1	23261	genome.wustl.edu	37	1	7731014	7731014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015215.1	+1	validated	p.S899I	1.000	87	0%	153	24.2%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_TIG,superfamily_E set domains
CAMTA1	23261	genome.wustl.edu	37	1	7737705	7737705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015215.1	+1	validated	p.Q942H	1.000	332	0%	390	25.4%	0	-	probably_damaging(0.998)	tolerated(0.32)	deleterious(0.498)	HMMPfam_TIG,superfamily_E set domains
PER3	8863	genome.wustl.edu	37	1	7879357	7879357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016831.1	+1	reviewed	p.T504N	0.000	374	0%	203	25.1%	2	100%	benign(0.004)	tolerated(0.16)	neutral(0.059)	NULL
ERRFI1	54206	genome.wustl.edu	37	1	8075612	8075612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018948.3	-1	validated	p.G23D	1.000	342	0%	204	22.1%	4	25%	probably_damaging(0.974)	deleterious(0.03)	deleterious(0.780)	HMMPfam_GTPase_binding
SLC2A7	155184	genome.wustl.edu	37	1	9064828	9064828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207420.2	-1	provisional	p.L435M	0.931	118	0%	95	27.4%	1	100%	benign(0.089)	deleterious(0.03)	neutral(0.371)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
SLC2A5	6518	genome.wustl.edu	37	1	9129575	9129575	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003039.2	-1	validated	p.S7	0.296	401	0%	461	25.2%	2	0%	-	-	-	superfamily_MFS_gen_substrate_transporter
H6PD	9563	genome.wustl.edu	37	1	9305387	9305387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004285.3	+1	reviewed	p.G132C	0.998	63	0%	85	17.6%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_G6PD_N,superfamily_NAD(P)-bd
H6PD	9563	genome.wustl.edu	37	1	9323698	9323698	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004285.3	+1	reviewed	p.S382	0.983	61	0%	53	22.6%	1	0%	-	-	-	superfamily_SSF55347
SLC25A33	84275	genome.wustl.edu	37	1	9642368	9642368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032315.2	+1	validated	p.T259A	1.000	141	0%	202	22.8%	41	34.1%	possibly_damaging(0.853)	deleterious(0)	deleterious(0.773)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
TMEM201	199953	genome.wustl.edu	37	1	9661204	9661204	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000416541	+1	known	p.A126S	1.000	100	0%	90	23.3%	16	56.2%	-	-	-	HMMPfam_DUF2448
PIK3CD	5293	genome.wustl.edu	37	1	9782086	9782086	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005026.3	+1	validated	p.S703	0.966	94	0%	99	25.3%	16	0%	-	-	-	superfamily_Kinase_like
CLSTN1	22883	genome.wustl.edu	37	1	9795613	9795613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009566.1	-1	validated	p.D599N	0.998	375	0%	362	10.8%	64	12.5%	benign(0.317)	tolerated(1)	neutral(0.099)	NULL
CLSTN1	22883	genome.wustl.edu	37	1	9796068	9796068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009566.1	-1	validated	p.G537S	1.000	96	0%	103	23.3%	45	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Concanavalin A-like lectins/glucanases
LZIC	84328	genome.wustl.edu	37	1	9995549	9995549	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032368.3	-1	provisional	e2+1	1.000	495	0%	355	13%	0	-	-	-	-	-
UBE4B	10277	genome.wustl.edu	37	1	10189462	10189462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105562.1	+1	reviewed	p.L551F	1.000	361	0%	122	24.6%	11	45.4%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
UBE4B	10277	genome.wustl.edu	37	1	10207055	10207055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105562.1	+1	reviewed	p.G833D	1.000	269	0%	131	23.7%	15	53.3%	possibly_damaging(0.928)	deleterious(0.01)	deleterious(0.781)	HMMPfam_Ufd2P_core
KIF1B	23095	genome.wustl.edu	37	1	10364617	10364617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183416.3	+1	reviewed	p.S1125N	0.970	68	0%	15	26.7%	3	33.3%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
CASZ1	54897	genome.wustl.edu	37	1	10714089	10714089	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001079843.1	-1	validated	p.C675	1.000	142	0%	126	23.8%	9	33.3%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CASZ1	54897	genome.wustl.edu	37	1	10714519	10714519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001079843.1	-1	validated	p.D599N	0.995	192	0%	255	26.3%	3	66.6%	possibly_damaging(0.484)	tolerated(0.24)	neutral(0.198)	NULL
SRM	6723	genome.wustl.edu	37	1	11116811	11116811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003132.2	-1	validated	p.V129I	1.000	158	0%	186	26.9%	226	40.2%	possibly_damaging(0.857)	deleterious(0.01)	deleterious(0.737)	HMMPfam_Spermine_synth,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
EXOSC10	5394	genome.wustl.edu	37	1	11139830	11139830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001998.1	-1	validated	p.R563W	1.000	243	0%	173	23.7%	96	40.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HRDC,HMMSmart_SM00341
MTOR	2475	genome.wustl.edu	37	1	11259711	11259711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004958.3	-1	reviewed	p.D1332N	1.000	270	0%	71	15.5%	8	25%	benign(0.004)	tolerated(0.14)	neutral(0.249)	superfamily_ARM-type_fold
MTOR	2475	genome.wustl.edu	37	1	11292504	11292504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004958.3	-1	reviewed	p.A835S	1.000	194	0%	90	24.4%	2	0%	benign(0.022)	tolerated(0.65)	neutral(0.004)	superfamily_ARM-type_fold
MTOR	2475	genome.wustl.edu	37	1	11317186	11317186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004958.3	-1	reviewed	p.R103Q	1.000	126	0%	141	20.6%	2	50%	benign(0.276)	tolerated(0.22)	neutral(0.072)	superfamily_ARM-type_fold
FBXO44	93611	genome.wustl.edu	37	1	11718814	11718814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183412.2	+1	reviewed	p.R129W	0.995	86	0%	103	15.5%	50	26%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
FBXO6	26270	genome.wustl.edu	37	1	11732027	11732027	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018438.5	+1	reviewed	p.G152	1.000	181	0%	201	23.9%	89	33.7%	-	-	-	HMMPfam_FBA,superfamily_Galactose-binding domain-like
MAD2L2	10459	genome.wustl.edu	37	1	11736175	11736175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127325.1	-1	reviewed	p.V119M	1.000	94	1.1%	88	15.9%	111	34.2%	probably_damaging(0.957)	deleterious(0.03)	deleterious(0.765)	HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2
C1orf187	374946	genome.wustl.edu	37	1	11771993	11771993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198545.3	+1	validated	p.P243H	0.994	165	0%	141	20.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MTHFR	4524	genome.wustl.edu	37	1	11850759	11850759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005957.4	-1	reviewed	p.A650V	0.000	154	0%	119	23.5%	9	33.3%	benign(0.002)	tolerated(0.21)	neutral(0.044)	NULL
CLCN6	1185	genome.wustl.edu	37	1	11888256	11888256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021735.2	+1	reviewed	p.A315V	1.000	536	0%	452	22.3%	2	50%	unknown(0)	-	-	NULL
NPPB	4879	genome.wustl.edu	37	1	11918333	11918333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002521.2	-1	reviewed	p.G109V	0.000	42	0%	56	23.2%	0	-	possibly_damaging(0.934)	tolerated(0.15)	deleterious(0.621)	HMMPfam_ANP,HMMSmart_NAT_PEP
PLOD1	5351	genome.wustl.edu	37	1	12009829	12009829	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000302.2	+1	reviewed	e3-1	1.000	330	0%	199	24.6%	2	100%	-	-	-	-
PLOD1	5351	genome.wustl.edu	37	1	12017981	12017981	+	Missense_Mutation	SNP	G	G	A	rs184999645	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000302.2	+1	reviewed	p.R275H	0.923	50	0%	64	31.2%	70	58.5%	probably_damaging(0.998)	tolerated(0.29)	deleterious(0.503)	NULL
PLOD1	5351	genome.wustl.edu	37	1	12026353	12026353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000302.2	+1	reviewed	p.A544T	0.957	125	0%	76	28.9%	89	6.7%	unknown(0)	tolerated(0.58)	-	NULL
PLOD1	5351	genome.wustl.edu	37	1	12027052	12027052	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000302.2	+1	reviewed	p.P553	0.001	280	0%	246	13.8%	125	28%	-	-	-	HMMSmart_P4Hc
TNFRSF8	943	genome.wustl.edu	37	1	12170255	12170255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001243.3	+1	reviewed	p.D224Y	0.039	77	0%	51	9.8%	1	0%	benign(0.429)	deleterious(0)	deleterious(0.584)	NULL
TNFRSF8	943	genome.wustl.edu	37	1	12186103	12186103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001243.3	+1	reviewed	p.R417W	0.008	353	0%	211	26.1%	0	-	benign(0.015)	deleterious(0.01)	neutral(0.406)	NULL
VPS13D	55187	genome.wustl.edu	37	1	12337195	12337195	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000011700	+1	known	p.W6*	0.995	119	0%	39	25.6%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
VPS13D	55187	genome.wustl.edu	37	1	12342965	12342965	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000011700	+1	known	p.P425H	0.153	251	0%	80	20%	0	-	-	-	-	NULL
VPS13D	55187	genome.wustl.edu	37	1	12371619	12371619	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000011700	+1	known	p.T1076I	1.000	340	0%	142	21.1%	2	0%	-	-	-	NULL
VPS13D	55187	genome.wustl.edu	37	1	12378384	12378384	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000011700	+1	known	p.S1291L	1.000	424	0%	154	15.6%	2	0%	-	-	-	NULL
PRAMEF1	65121	genome.wustl.edu	37	1	12855862	12855862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023013.1	+1	provisional	p.T381I	0.003	399	0%	140	25%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_SSF52047
PRAMEF11	440560	genome.wustl.edu	37	1	12884845	12884845	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342032.1	-1	model	p.A499V	0.001	269	0%	103	20.4%	0	-	-	-	-	NULL
PRDM2	7799	genome.wustl.edu	37	1	14105063	14105063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012231.4	+1	reviewed	p.A258V	0.471	81	1.2%	31	25.8%	4	50%	unknown(0)	tolerated(1)	-	NULL
PRDM2	7799	genome.wustl.edu	37	1	14106530	14106530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012231.4	+1	reviewed	p.S747I	1.000	146	0%	78	19.2%	3	66.6%	unknown(0)	deleterious(0.01)	-	NULL
PRDM2	7799	genome.wustl.edu	37	1	14108976	14108976	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012231.4	+1	reviewed	p.S1562	0.894	110	0%	57	12.3%	4	100%	-	-	-	NULL
KAZ	23254	genome.wustl.edu	37	1	15390100	15390100	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201628.2	+1	validated	p.L360	1.000	117	0%	139	19.4%	35	45.7%	-	-	-	NULL
KAZ	23254	genome.wustl.edu	37	1	15438947	15438947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201628.2	+1	validated	p.E691D	1.000	96	1%	85	23.5%	4	50%	possibly_damaging(0.945)	tolerated(0.07)	deleterious(0.709)	NULL
KAZ	23254	genome.wustl.edu	37	1	15439013	15439013	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201628.2	+1	validated	p.S713	0.000	112	0%	103	18.4%	3	100%	-	-	-	NULL
FHAD1	114827	genome.wustl.edu	37	1	15598843	15598843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052929.1	+1	provisional	p.A40T	0.998	93	0%	46	32.6%	2	50%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain
FHAD1	114827	genome.wustl.edu	37	1	15642873	15642873	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052929.1	+1	provisional	e8-1	1.000	211	0%	156	21.2%	0	-	-	-	-	-
FHAD1	114827	genome.wustl.edu	37	1	15679372	15679372	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052929.1	+1	provisional	e18-1	0.977	252	0%	123	16.3%	0	-	-	-	-	-
FHAD1	114827	genome.wustl.edu	37	1	15686989	15686989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052929.1	+1	provisional	p.R896W	0.115	156	0.6%	82	19.5%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FHAD1	114827	genome.wustl.edu	37	1	15689190	15689190	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000444385	+1	known	p.A302V	0.000	110	0%	63	17.5%	0	-	-	-	-	NULL
CASP9	842	genome.wustl.edu	37	1	15819480	15819480	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000424908	-1	known	p.L185F	0.740	166	0%	137	13.1%	11	27.2%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CASP9	842	genome.wustl.edu	37	1	15821789	15821789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001229.2	-1	reviewed	p.V343M	1.000	179	0%	93	12.9%	11	9%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
DNAJC16	23341	genome.wustl.edu	37	1	15860795	15860795	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015291.2	+1	provisional	p.Y77	0.035	296	0%	162	23.5%	2	50%	-	-	-	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,PatternScan_DNAJ_1
RSC1A1	6248	genome.wustl.edu	37	1	15986911	15986911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006511.1	+1	provisional	p.A183V	0.000	151	0%	45	17.8%	9	33.3%	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
PLEKHM2	23207	genome.wustl.edu	37	1	16046247	16046247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015164.2	+1	validated	p.L162M	1.000	287	0%	175	22.9%	29	41.3%	possibly_damaging(0.775)	deleterious(0.03)	deleterious(0.653)	NULL
PLEKHM2	23207	genome.wustl.edu	37	1	16053913	16053913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015164.2	+1	validated	p.P449L	0.970	19	0%	18	55.6%	20	20%	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
FBLIM1	54751	genome.wustl.edu	37	1	16111126	16111126	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017556.2	+1	reviewed	p.H364	0.774	173	0%	129	18.6%	49	61.2%	-	-	-	HMMPfam_LIM
SPEN	23013	genome.wustl.edu	37	1	16261486	16261486	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015001.2	+1	reviewed	p.L2917	0.279	95	0%	102	21.6%	10	30%	-	-	-	NULL
CLCNKB	1188	genome.wustl.edu	37	1	16373092	16373092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000085.3	+1	reviewed	p.V98M	0.599	243	0.4%	226	21.7%	0	-	benign(0.143)	tolerated(0.2)	neutral(0.061)	superfamily_Clc chloride channel
FAM131C	348487	genome.wustl.edu	37	1	16390069	16390069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182623.2	-1	validated	p.D29Y	0.371	223	0%	202	24.3%	0	-	benign(0.267)	deleterious(0)	deleterious(0.473)	NULL
ARHGEF19	128272	genome.wustl.edu	37	1	16532151	16532151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153213.3	-1	provisional	p.P488H	1.000	40	0%	55	29.1%	5	20%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ARHGEF19	128272	genome.wustl.edu	37	1	16532769	16532769	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153213.3	-1	provisional	p.F402V	1.000	63	0%	88	27.3%	4	25%	probably_damaging(0.953)	deleterious(0)	deleterious(0.841)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ARHGEF19	128272	genome.wustl.edu	37	1	16535419	16535419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153213.3	-1	provisional	p.S44N	0.804	50	0%	61	13.1%	0	-	benign(0.141)	deleterious(0.01)	neutral(0.418)	NULL
FBXO42	54455	genome.wustl.edu	37	1	16577762	16577762	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018994.1	-1	provisional	p.D519	0.985	85	0%	54	18.5%	37	35.1%	-	-	-	NULL
C1orf144	26099	genome.wustl.edu	37	1	16717883	16717883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114600.1	+1	provisional	p.R22Q	1.000	352	0%	313	19.5%	15	13.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ATP13A2	23400	genome.wustl.edu	37	1	17313011	17313011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022089.2	-1	reviewed	p.L1118M	0.998	50	0%	58	22.4%	58	34.4%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
ATP13A2	23400	genome.wustl.edu	37	1	17313328	17313328	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022089.2	-1	reviewed	p.A1069	0.809	59	0%	54	14.8%	111	16.2%	-	-	-	superfamily_Calcium ATPase transmembrane domain M
PADI1	29943	genome.wustl.edu	37	1	17555452	17555452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013358.2	+1	reviewed	p.E279K	0.985	53	0%	55	23.6%	0	-	possibly_damaging(0.918)	deleterious(0.04)	deleterious(0.718)	HMMPfam_PAD,superfamily_Peptidylarginine deiminase Pad4 middle domain
RCC2	55920	genome.wustl.edu	37	1	17748699	17748699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136204.1	-1	validated	p.Q248H	1.000	159	0%	237	17.3%	45	2.2%	benign(0.015)	tolerated(0.13)	neutral(0.253)	superfamily_RCC1/BLIP-II
ARHGEF10L	55160	genome.wustl.edu	37	1	17939651	17939651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018125.3	+1	validated	p.K236N	1.000	127	0%	89	20.2%	0	-	possibly_damaging(0.895)	tolerated(0.05)	deleterious(0.698)	NULL
ARHGEF10L	55160	genome.wustl.edu	37	1	17952515	17952515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018125.3	+1	validated	p.R461M	1.000	117	0%	123	23.6%	11	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ARHGEF10L	55160	genome.wustl.edu	37	1	18021730	18021730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018125.3	+1	validated	p.V1088I	1.000	68	0%	87	21.8%	49	36.7%	benign(0.292)	tolerated(0.16)	neutral(0.149)	superfamily_WD40 repeat-like
TAS1R2	80834	genome.wustl.edu	37	1	19166262	19166262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152232.2	-1	validated	p.S784I	0.001	272	0%	127	29.9%	0	-	benign(0.016)	tolerated(0.07)	neutral(0.320)	HMMPfam_7tm_3
TAS1R2	80834	genome.wustl.edu	37	1	19167004	19167004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152232.2	-1	validated	p.A537T	0.058	54	0%	45	28.9%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,superfamily_SSF57586
TAS1R2	80834	genome.wustl.edu	37	1	19175955	19175955	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152232.2	-1	validated	p.E449	0.265	140	0%	103	16.5%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
ALDH4A1	8659	genome.wustl.edu	37	1	19200963	19200963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003748.3	-1	reviewed	p.A525S	0.983	67	0%	118	24.6%	18	38.8%	benign(0.018)	tolerated(0.09)	neutral(0.297)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
ALDH4A1	8659	genome.wustl.edu	37	1	19201972	19201972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003748.3	-1	reviewed	p.V455A	0.998	88	0%	90	11.1%	19	63.1%	benign(0.04)	tolerated(0.11)	neutral(0.274)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
UBR4	23352	genome.wustl.edu	37	1	19440221	19440221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020765.2	-1	validated	p.S3810Y	1.000	181	0%	83	27.7%	16	12.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
KIAA0090	23065	genome.wustl.edu	37	1	19571427	19571427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015047.1	-1	predicted	p.A65S	1.000	308	0%	262	20.2%	16	37.5%	benign(0.019)	tolerated(0.46)	neutral(0.013)	superfamily_Quinoprotein alcohol dehydrogenase-like
NBL1	4681	genome.wustl.edu	37	1	19981562	19981562	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182744.2	+1	reviewed	p.A48	0.996	39	0%	54	24.1%	90	26.6%	-	-	-	HMMPfam_DAN
VWA5B1	127731	genome.wustl.edu	37	1	20659359	20659359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039500.2	+1	validated	p.S558I	0.994	195	0%	123	18.7%	0	-	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	NULL
VWA5B1	127731	genome.wustl.edu	37	1	20680538	20680538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039500.2	+1	validated	p.V1144M	1.000	52	0%	54	29.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DDOST	1650	genome.wustl.edu	37	1	20978970	20978970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005216.4	-1	reviewed	p.A425T	1.000	100	0%	89	21.3%	514	40.2%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_DDOST_48kD
KIF17	57576	genome.wustl.edu	37	1	21009276	21009276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020816.2	-1	validated	p.R778M	0.962	104	0%	61	21.3%	3	33.3%	possibly_damaging(0.929)	deleterious(0.01)	deleterious(0.782)	NULL
KIF17	57576	genome.wustl.edu	37	1	21013893	21013893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020816.2	-1	validated	p.K642N	0.078	31	0%	33	27.3%	1	100%	possibly_damaging(0.646)	deleterious(0.02)	deleterious(0.610)	NULL
KIF17	57576	genome.wustl.edu	37	1	21036273	21036273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020816.2	-1	validated	p.H177Y	1.000	108	0%	77	19.5%	0	-	possibly_damaging(0.88)	tolerated(0.65)	neutral(0.346)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
EIF4G3	8672	genome.wustl.edu	37	1	21276576	21276576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003760.3	-1	validated	p.S192I	1.000	95	0%	36	44.4%	13	46.1%	possibly_damaging(0.855)	deleterious(0.01)	deleterious(0.736)	NULL
EIF4G3	8672	genome.wustl.edu	37	1	21307562	21307562	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003760.3	-1	validated	p.G63	0.649	142	0%	57	17.5%	5	60%	-	-	-	NULL
NBPF3	84224	genome.wustl.edu	37	1	21800067	21800067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032264.2	+1	validated	p.C310Y	0.000	476	0.2%	152	19.1%	7	57.1%	benign(0.066)	tolerated(0.61)	neutral(0.009)	NULL
ALPL	249	genome.wustl.edu	37	1	21890654	21890654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000478.4	+1	reviewed	p.S198N	1.000	78	0%	68	19.1%	11	63.6%	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core
USP48	84196	genome.wustl.edu	37	1	22055141	22055141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032236.5	-1	reviewed	p.R458C	1.000	477	0.4%	156	24.4%	23	30.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HSPG2	3339	genome.wustl.edu	37	1	22151229	22151229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000374695	-1	known	p.F4211L	1.000	98	0%	118	32.2%	201	30.3%	probably_damaging(0.977)	deleterious(0.04)	deleterious(0.768)	superfamily_Concanavalin A-like lectins/glucanases
HSPG2	3339	genome.wustl.edu	37	1	22169365	22169365	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005529.5	-1	reviewed	p.D2916N	0.854	95	0%	102	23.5%	18	33.3%	-	-	-	NULL
HSPG2	3339	genome.wustl.edu	37	1	22170711	22170711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000374695	-1	known	p.V2849A	0.993	42	0%	40	20%	27	33.3%	possibly_damaging(0.917)	tolerated(0.33)	neutral(0.392)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_I-set,superfamily_Immunoglobulin
HSPG2	3339	genome.wustl.edu	37	1	22206914	22206914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000374695	-1	known	p.D713Y	1.000	60	0%	59	22%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_B,HMMSmart_SM00281
CELA3B	23436	genome.wustl.edu	37	1	22307555	22307555	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007352.2	+1	reviewed	p.V84	0.869	184	0%	110	18.2%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
EPHA8	2046	genome.wustl.edu	37	1	22903002	22903002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020526.3	+1	reviewed	p.D151G	1.000	68	0%	97	11.3%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
EPHA8	2046	genome.wustl.edu	37	1	22924303	22924303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020526.3	+1	reviewed	p.G689R	1.000	61	0%	41	19.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
EPHB2	2048	genome.wustl.edu	37	1	23222908	23222908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004442.6	+1	reviewed	p.R569W	1.000	107	0%	83	14.5%	2	50%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
EPHB2	2048	genome.wustl.edu	37	1	23237047	23237047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004442.6	+1	reviewed	p.A893D	1.000	59	0%	49	20.4%	11	27.2%	possibly_damaging(0.9)	tolerated(0.27)	neutral(0.390)	superfamily_Kinase_like
HTR1D	3352	genome.wustl.edu	37	1	23520033	23520033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000864.4	-1	validated	p.R227H	1.000	120	0%	67	29.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
HNRNPR	10236	genome.wustl.edu	37	1	23665084	23665084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102398.1	-1	reviewed	p.D59N	1.000	268	0%	289	21.1%	44	29.5%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
ENSG00000249087	0	genome.wustl.edu	37	1	23695852	23695852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000507744	+1	known	p.R21I	0.998	35	0%	55	10.9%	1	100%	unknown(0)	-	-	NULL
TCEB3	6924	genome.wustl.edu	37	1	24082436	24082436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003198.2	+1	reviewed	p.R658Q	1.000	191	0%	143	20.3%	56	44.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Elongin_A
MYOM3	127294	genome.wustl.edu	37	1	24432469	24432469	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152372.3	-1	validated	p.E167	0.052	49	0%	50	28%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
IL22RA1	58985	genome.wustl.edu	37	1	24449805	24449805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021258.2	-1	reviewed	p.P260H	0.939	140	0%	87	11.5%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
IL28RA	163702	genome.wustl.edu	37	1	24484172	24484172	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170743.2	-1	reviewed	p.G337	0.000	304	0%	125	13.6%	1	0%	-	-	-	NULL
C1orf201	90529	genome.wustl.edu	37	1	24687488	24687488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178122.3	-1	predicted	p.P214S	0.952	228	0%	117	22.2%	8	62.5%	unknown(0)	deleterious(0)	-	NULL
SRRM1	10250	genome.wustl.edu	37	1	24977935	24977935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005839.3	+1	validated	p.S186Y	0.995	217	0%	188	22.9%	29	41.3%	unknown(0)	tolerated(0.06)	-	NULL
RUNX3	864	genome.wustl.edu	37	1	25228914	25228914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031680.2	-1	reviewed	p.P330L	1.000	44	0%	32	28.1%	5	40%	benign(0.013)	tolerated(0.25)	neutral(0.037)	HMMPfam_RunxI
RHD	6007	genome.wustl.edu	37	1	25599138	25599138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016124.3	+1	reviewed	p.Y34H	0.011	451	0%	392	12%	0	-	possibly_damaging(0.463)	deleterious(0.04)	deleterious(0.501)	HMMPfam_Ammonium_transp
STMN1	3925	genome.wustl.edu	37	1	26227520	26227520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005563.3	-1	reviewed	p.T146N	0.989	713	0%	763	24.9%	879	42.3%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
PAFAH2	5051	genome.wustl.edu	37	1	26310447	26310447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000437.3	-1	reviewed	p.R181Q	0.978	316	0.3%	164	25.6%	12	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAF-AH_p_II,superfamily_alpha/beta-Hydrolases
EXTL1	2134	genome.wustl.edu	37	1	26355705	26355705	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004455.2	+1	reviewed	p.L267	0.806	61	0%	60	23.3%	0	-	-	-	-	HMMPfam_Exostosin
SLC30A2	7780	genome.wustl.edu	37	1	26370919	26370919	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004434.1	-1	validated	p.H96	0.963	129	0%	162	27.2%	0	-	-	-	-	HMMPfam_Cation_efflux
TRIM63	84676	genome.wustl.edu	37	1	26393918	26393918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032588.2	-1	reviewed	p.C23Y	1.000	164	0%	101	19.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
PDIK1L	149420	genome.wustl.edu	37	1	26449101	26449101	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_026685.1	+1	validated	NULL	0.999	55	0%	45	13.3%	4	0%	-	-	-	-
CNKSR1	10256	genome.wustl.edu	37	1	26515295	26515295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006314.2	+1	reviewed	p.R575W	0.000	64	0%	73	23.3%	30	60%	benign(0.003)	tolerated(0.05)	neutral(0.345)	NULL
CATSPER4	378807	genome.wustl.edu	37	1	26517884	26517884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198137.1	+1	validated	p.I107T	1.000	145	0%	139	23%	0	-	possibly_damaging(0.83)	deleterious(0.01)	deleterious(0.721)	superfamily_Voltage-gated potassium channels
CATSPER4	378807	genome.wustl.edu	37	1	26526445	26526445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198137.1	+1	validated	p.A295T	1.000	299	0.3%	178	20.2%	0	-	probably_damaging(1)	tolerated(0.45)	deleterious(0.512)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CEP85	64793	genome.wustl.edu	37	1	26581859	26581859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022778.2	+1	provisional	p.G136S	0.001	348	0%	108	26.9%	2	50%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
ZNF683	257101	genome.wustl.edu	37	1	26691716	26691716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000374203	-1	known	p.S24N	0.004	78	0%	62	22.6%	35	0%	benign(0.138)	tolerated(0.34)	neutral(0.035)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27087961	27087961	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006015.4	+1	reviewed	p.R750*	1.000	158	0%	70	41.4%	1	100%	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27088642	27088642	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006015.4	+1	reviewed	e7-1	1.000	181	0%	83	20.5%	0	-	-	-	-	-
ARID1A	8289	genome.wustl.edu	37	1	27106730	27106730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006015.4	+1	reviewed	p.P2114L	1.000	141	0%	115	20%	36	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PIGV	55650	genome.wustl.edu	37	1	27121202	27121202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017837.2	+1	validated	p.T226M	0.000	350	0%	304	24.3%	15	26.6%	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_Mannosyl_trans2
PIGV	55650	genome.wustl.edu	37	1	27121314	27121314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017837.2	+1	validated	p.F263L	1.000	400	0%	381	20.7%	16	56.2%	unknown(0)	-	-	HMMPfam_Mannosyl_trans2
PIGV	55650	genome.wustl.edu	37	1	27121534	27121534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017837.2	+1	validated	p.L337M	0.862	266	0%	257	25.3%	21	47.6%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Mannosyl_trans2
C1orf172	126695	genome.wustl.edu	37	1	27278033	27278033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152365.2	-1	validated	p.S280N	1.000	56	0%	56	12.5%	43	23.2%	benign(0.011)	tolerated(1)	neutral(0.001)	NULL
C1orf172	126695	genome.wustl.edu	37	1	27278190	27278190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152365.2	-1	validated	p.E228K	1.000	41	0%	31	16.1%	34	64.7%	probably_damaging(0.99)	tolerated(0.14)	deleterious(0.691)	NULL
C1orf172	126695	genome.wustl.edu	37	1	27278240	27278240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152365.2	-1	validated	p.R211H	0.967	65	0%	38	15.8%	23	52.1%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	NULL
LOC646567	646567	genome.wustl.edu	37	1	27312528	27312528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_929503.3	-1	model	p.L102M	1.000	336	0.3%	237	23.2%	0	-	-	-	-	HMMPfam_DUF2055
SLC9A1	6548	genome.wustl.edu	37	1	27429041	27429041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003047.3	-1	validated	p.R552Q	1.000	57	0%	61	19.7%	25	28%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	NULL
WDTC1	23038	genome.wustl.edu	37	1	27620555	27620555	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015023.3	+1	validated	p.F235	1.000	101	0%	124	25.8%	40	35%	-	-	-	superfamily_WD40 repeat-like
WDTC1	23038	genome.wustl.edu	37	1	27621038	27621038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015023.3	+1	validated	p.N264S	1.000	144	0%	146	16.4%	37	10.8%	benign(0.062)	tolerated(0.66)	neutral(0.007)	superfamily_WD40 repeat-like
WDTC1	23038	genome.wustl.edu	37	1	27623580	27623580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015023.3	+1	validated	p.G330S	0.179	196	0%	203	22.2%	23	47.8%	possibly_damaging(0.586)	tolerated(0.18)	neutral(0.258)	superfamily_WD40 repeat-like
MAP3K6	9064	genome.wustl.edu	37	1	27685358	27685358	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004672.3	-1	reviewed	e19-1	1.000	34	0%	50	16%	0	-	-	-	-	-
AHDC1	27245	genome.wustl.edu	37	1	27876868	27876868	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001029882.2	-1	validated	p.R587*	0.959	47	0%	58	31%	4	25%	-	-	-	NULL
AHDC1	27245	genome.wustl.edu	37	1	27878213	27878213	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001029882.2	-1	validated	p.L138	1.000	71	0%	47	21.3%	7	42.8%	-	-	-	NULL
PTAFR	5724	genome.wustl.edu	37	1	28477017	28477017	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000952.4	-1	validated	p.R172	0.849	224	0%	99	10.1%	14	14.2%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RCC1	1104	genome.wustl.edu	37	1	28858743	28858743	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001048194.1	+1	validated	p.S139T	1.000	176	0%	158	25.9%	117	35%	benign(0.074)	tolerated(0.11)	neutral(0.277)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
RCC1	1104	genome.wustl.edu	37	1	28862489	28862489	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001048194.1	+1	validated	p.S287	0.191	269	0.4%	216	19.9%	187	57.2%	-	-	-	superfamily_RCC1/BLIP-II
RCC1	1104	genome.wustl.edu	37	1	28863273	28863273	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001048194.1	+1	validated	p.L349	1.000	175	0%	149	21.5%	146	56.8%	-	-	-	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
GMEB1	10691	genome.wustl.edu	37	1	29040931	29040931	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006582.2	+1	reviewed	p.K456	1.000	215	0%	85	23.5%	20	20%	-	-	-	NULL
YTHDF2	51441	genome.wustl.edu	37	1	29069972	29069972	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016258.2	+1	reviewed	p.N397I	1.000	234	0%	166	21.1%	78	44.8%	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	NULL
PTPRU	10076	genome.wustl.edu	37	1	29609198	29609198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005704.3	+1	reviewed	p.V627L	1.000	80	0%	47	10.6%	0	-	benign(0.035)	tolerated(0.56)	neutral(0.009)	NULL
PTPRU	10076	genome.wustl.edu	37	1	29644321	29644321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005704.3	+1	reviewed	p.R1202Q	1.000	81	0%	69	27.5%	2	0%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
LOC100288450	100288450	genome.wustl.edu	37	1	29814802	29814802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342037.1	-1	model	p.M81T	0.985	45	0%	17	23.5%	0	-	-	-	-	NULL
LAPTM5	7805	genome.wustl.edu	37	1	31206701	31206701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006762.2	-1	reviewed	p.A255S	0.007	78	0%	61	16.4%	244	0%	probably_damaging(0.954)	deleterious(0.04)	deleterious(0.746)	HMMPfam_Mtp
LOC100288670	100288670	genome.wustl.edu	37	1	31347438	31347438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342056.1	+1	model	p.C76Y	0.990	81	0%	115	27%	0	-	-	-	-	NULL
ZCCHC17	51538	genome.wustl.edu	37	1	31837019	31837019	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016505.2	+1	provisional	p.H235	0.998	245	0%	107	28%	50	54%	-	-	-	NULL
SERINC2	347735	genome.wustl.edu	37	1	31899625	31899625	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178865.3	+1	validated	p.T245	0.010	153	0%	147	19%	313	52%	-	-	-	HMMPfam_Serinc
SPOCD1	90853	genome.wustl.edu	37	1	32258345	32258345	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000452755	-1	known	p.R263Q	0.995	36	0%	25	32%	0	-	-	-	-	HMMPfam_SPOC
SPOCD1	90853	genome.wustl.edu	37	1	32266091	32266091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144569.4	-1	provisional	p.R518K	0.007	95	0%	87	14.9%	0	-	unknown(0)	-	-	NULL
DCDC2B	149069	genome.wustl.edu	37	1	32676882	32676882	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099434.1	+1	validated	p.P92	0.001	202	0.5%	153	18.3%	0	-	-	-	-	superfamily_Doublecortin (DC)
DCDC2B	149069	genome.wustl.edu	37	1	32680484	32680484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099434.1	+1	validated	p.Q267H	0.001	183	0%	162	21.6%	5	20%	possibly_damaging(0.835)	tolerated(0.07)	deleterious(0.637)	NULL
LCK	3932	genome.wustl.edu	37	1	32751259	32751259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042771.1	+1	reviewed	p.R491H	0.997	92	0%	82	20.7%	100	0%	possibly_damaging(0.489)	tolerated(0.38)	neutral(0.180)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
HDAC1	3065	genome.wustl.edu	37	1	32796462	32796462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004964.2	+1	reviewed	p.C311Y	1.000	255	0%	308	21.4%	276	45.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
MARCKSL1	65108	genome.wustl.edu	37	1	32800466	32800466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023009.5	-1	validated	p.R107I	1.000	44	0%	87	23%	228	37.2%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	PatternScan_MARCKS_2
TSSK3	81629	genome.wustl.edu	37	1	32829266	32829266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052841.3	+1	reviewed	p.Q72H	0.963	186	0%	235	21.3%	5	80%	benign(0)	tolerated(0.43)	neutral(0.013)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
BSDC1	55108	genome.wustl.edu	37	1	32849627	32849627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143888.1	-1	validated	p.A71D	0.001	183	0%	122	14.8%	2	50%	benign(0.006)	tolerated(0.14)	neutral(0.249)	NULL
ZBTB8B	728116	genome.wustl.edu	37	1	32936820	32936820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145720.1	+1	provisional	p.D199Y	0.962	65	0%	91	20.9%	0	-	benign(0.035)	deleterious(0.03)	neutral(0.366)	NULL
ZBTB8A	653121	genome.wustl.edu	37	1	33058634	33058634	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040441.1	+1	validated	p.V34	1.000	245	0%	144	14.6%	3	66.6%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
ZBTB8A	653121	genome.wustl.edu	37	1	33065937	33065937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040441.1	+1	validated	p.D415N	1.000	458	0%	289	21.8%	6	33.3%	possibly_damaging(0.948)	tolerated(0.07)	deleterious(0.710)	NULL
ZBTB8OS	339487	genome.wustl.edu	37	1	33099712	33099712	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000465588	-1	known	NULL	0.000	175	0%	81	23.5%	0	-	-	-	-	-
RBBP4	5928	genome.wustl.edu	37	1	33138465	33138465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005610.2	+1	reviewed	p.S392F	1.000	630	0%	356	21.6%	101	31.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SYNC	81493	genome.wustl.edu	37	1	33161474	33161474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030786.2	-1	reviewed	p.E75D	0.332	378	0%	368	23.1%	0	-	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	NULL
KIAA1522	57648	genome.wustl.edu	37	1	33236129	33236129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020888.2	+1	validated	p.S450N	0.000	43	0%	40	30%	44	54.5%	benign(0.019)	tolerated(0.37)	neutral(0.020)	NULL
KIAA1522	57648	genome.wustl.edu	37	1	33237915	33237915	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020888.2	+1	validated	p.E1045	0.713	29	0%	28	21.4%	53	49%	-	-	-	NULL
YARS	8565	genome.wustl.edu	37	1	33276554	33276554	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003680.3	-1	reviewed	p.V54	1.000	691	0%	619	23.4%	75	45.3%	-	-	-	HMMPfam_tRNA-synt_1b,superfamily_Nucleotidylyl transferase
PHC2	1912	genome.wustl.edu	37	1	33833030	33833030	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198040.2	-1	reviewed	e6-1	1.000	290	0%	283	23.7%	0	-	-	-	-	-
ZSCAN20	7579	genome.wustl.edu	37	1	33956980	33956980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145238.3	+1	validated	p.E374D	1.000	75	0%	38	18.4%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMSmart_SM00717
ZSCAN20	7579	genome.wustl.edu	37	1	33960263	33960263	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145238.3	+1	validated	p.K773N	0.537	212	0%	112	21.4%	3	66.6%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CSMD2	114784	genome.wustl.edu	37	1	34006832	34006832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052896.3	-1	validated	p.T2975A	0.996	256	0%	165	25.5%	0	-	benign(0.019)	tolerated(0.21)	neutral(0.045)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD2	114784	genome.wustl.edu	37	1	34209203	34209203	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052896.3	-1	validated	p.S577	1.000	103	0%	62	12.9%	0	-	-	-	-	superfamily_Spermadhesin CUB domain
GJB5	2709	genome.wustl.edu	37	1	35223201	35223201	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005268.2	+1	provisional	p.L90	0.858	159	0%	113	21.2%	1	0%	-	-	-	HMMPfam_Connexin
GJB4	127534	genome.wustl.edu	37	1	35226861	35226861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153212.2	+1	reviewed	p.N2K	1.000	175	0%	146	21.2%	0	-	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_Connexin
GJB3	2707	genome.wustl.edu	37	1	35250488	35250488	+	Missense_Mutation	SNP	G	G	A	rs74315321	byCluster	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005752.1	+1	reviewed	p.R42H	0.959	313	0%	289	26.3%	7	42.8%	benign(0.317)	tolerated(0.22)	neutral(0.141)	HMMPfam_Connexin,HMMSmart_SM00037
DLGAP3	58512	genome.wustl.edu	37	1	35350630	35350630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080418.1	-1	provisional	p.R650M	1.000	242	0%	340	23.2%	0	-	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	HMMPfam_GKAP
DLGAP3	58512	genome.wustl.edu	37	1	35351703	35351703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080418.1	-1	provisional	p.P524T	1.000	26	0%	29	17.2%	0	-	benign(0.073)	tolerated(0.35)	neutral(0.026)	NULL
ZMYM1	79830	genome.wustl.edu	37	1	35578701	35578701	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024772.3	+1	validated	p.Q424*	0.002	210	0%	148	23%	2	50%	-	-	-	NULL
ZMYM1	79830	genome.wustl.edu	37	1	35579239	35579239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024772.3	+1	validated	p.R603Q	0.018	79	0%	73	20.5%	2	50%	possibly_damaging(0.471)	tolerated(0.65)	neutral(0.159)	NULL
SFPQ	6421	genome.wustl.edu	37	1	35650117	35650117	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005066.2	-1	validated	p.P688	1.000	383	0%	429	17.7%	436	45.4%	-	-	-	NULL
SFPQ	6421	genome.wustl.edu	37	1	35654618	35654618	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005066.2	-1	validated	p.K561N	1.000	1051	0.1%	984	22.6%	592	43.4%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_RNA-binding domain RBD
ZMYM4	9202	genome.wustl.edu	37	1	35846970	35846970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005095.2	+1	validated	p.P431H	1.000	322	0%	241	23.7%	1	100%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
KIAA0319L	79932	genome.wustl.edu	37	1	35909858	35909858	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024874.4	-1	reviewed	p.F854V	1.000	206	0%	79	11.4%	41	39%	benign(0.282)	tolerated(0.18)	neutral(0.142)	NULL
NCDN	23154	genome.wustl.edu	37	1	36025980	36025980	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014839.1	+1	reviewed	p.I76	1.000	113	0%	107	26.2%	10	30%	-	-	-	HMMPfam_Neurochondrin
EIF2C3	192669	genome.wustl.edu	37	1	36499873	36499873	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024852.2	+1	reviewed	p.L564	1.000	240	0%	162	17.9%	2	50%	-	-	-	HMMPfam_Piwi,superfamily_RNaseH_fold
ADPRHL2	54936	genome.wustl.edu	37	1	36557405	36557405	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017825.2	+1	reviewed	p.S165	0.113	141	0%	165	20.6%	69	46.3%	-	-	-	HMMPfam_ADP_ribosyl_GH,superfamily_Ribosyl_crysJ1
STK40	83931	genome.wustl.edu	37	1	36807401	36807401	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032017.1	-1	provisional	p.T421	1.000	35	0%	34	20.6%	25	32%	-	-	-	NULL
ZC3H12A	80149	genome.wustl.edu	37	1	37945972	37945972	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025079.2	+1	validated	p.I175	1.000	85	0%	105	27.6%	15	33.3%	-	-	-	NULL
ZC3H12A	80149	genome.wustl.edu	37	1	37948351	37948351	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025079.2	+1	validated	p.T313	0.248	75	0%	80	16.3%	17	35.2%	-	-	-	NULL
GNL2	29889	genome.wustl.edu	37	1	38058382	38058382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013285.2	-1	validated	p.P59S	1.000	427	0%	505	20.4%	21	33.3%	benign(0.111)	tolerated(0.06)	neutral(0.331)	HMMPfam_NGP1NT
RSPO1	284654	genome.wustl.edu	37	1	38082288	38082288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001038633.2	-1	reviewed	p.G52S	1.000	38	0%	37	18.9%	3	0%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMSmart_SM00261,superfamily_Growth factor receptor domain
C1orf109	54955	genome.wustl.edu	37	1	38151945	38151945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017850.1	-1	predicted	p.S152L	0.122	164	0.6%	99	23.2%	17	76.4%	benign(0.001)	tolerated(1)	-	NULL
INPP5B	3633	genome.wustl.edu	37	1	38331553	38331553	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005540.2	-1	reviewed	p.S798	1.000	168	0%	115	20%	14	28.5%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
INPP5B	3633	genome.wustl.edu	37	1	38406451	38406451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005540.2	-1	reviewed	p.Q100H	1.000	239	0%	215	22.3%	0	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	PatternScan_LECTIN_LEGUME_BETA
UTP11L	51118	genome.wustl.edu	37	1	38488394	38488394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016037.3	+1	validated	p.K197N	0.977	403	0%	277	24.9%	74	39.1%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_Utp11
MYCBP	26292	genome.wustl.edu	37	1	39333233	39333233	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012333.3	-1	validated	e3+1	1.000	241	0%	322	23%	0	-	-	-	-	-
MYCBP	26292	genome.wustl.edu	37	1	39338759	39338759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012333.3	-1	validated	p.A7T	1.000	30	0%	43	25.6%	34	44.1%	possibly_damaging(0.811)	tolerated(0.6)	neutral(0.310)	NULL
GJA9	81025	genome.wustl.edu	37	1	39341427	39341427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030772.3	-1	provisional	p.R115I	0.985	438	0%	398	19.1%	4	100%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_Connexin
MACF1	23499	genome.wustl.edu	37	1	39719992	39719992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012090.3	+1	reviewed	p.R132H	1.000	248	0%	172	22.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
MACF1	23499	genome.wustl.edu	37	1	39750068	39750068	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012090.3	+1	reviewed	p.G372*	1.000	260	0%	108	25.9%	1	0%	-	-	-	superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39757632	39757632	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012090.3	+1	reviewed	p.L617	0.157	216	0.5%	88	33%	0	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39790350	39790350	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000372925	+1	known	p.T613A	0.973	194	0%	66	33.3%	0	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39798241	39798241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033044.2	+1	reviewed	p.S434F	0.022	231	0%	65	16.9%	0	-	possibly_damaging(0.708)	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39835720	39835720	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033044.2	+1	reviewed	p.S2759	1.000	255	0%	154	31.8%	1	0%	-	-	-	superfamily_Spectrin
MACF1	23499	genome.wustl.edu	37	1	39851485	39851485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033044.2	+1	reviewed	p.A3183D	1.000	213	0%	84	10.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SPEC,superfamily_Spectrin
MACF1	23499	genome.wustl.edu	37	1	39853257	39853257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033044.2	+1	reviewed	p.L3355I	1.000	114	0%	62	12.9%	5	40%	possibly_damaging(0.942)	tolerated(0.18)	neutral(0.443)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
KIAA0754	643314	genome.wustl.edu	37	1	39876933	39876933	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015038.1	+1	predicted	p.A332	1.000	454	0%	379	12.1%	0	-	-	-	-	NULL
HEYL	26508	genome.wustl.edu	37	1	40092620	40092620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014571.3	-1	reviewed	p.S182R	0.979	140	0%	85	31.8%	4	0%	probably_damaging(0.965)	tolerated(0.24)	neutral(0.444)	NULL
NT5C1A	84618	genome.wustl.edu	37	1	40131311	40131311	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032526.1	-1	provisional	p.A105	0.901	125	0%	98	32.7%	0	-	-	-	-	HMMPfam_5-nucleotidase
CAP1	10487	genome.wustl.edu	37	1	40535837	40535837	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105530.1	+1	reviewed	p.Q334*	1.000	180	0%	67	16.4%	124	0%	-	-	-	HMMPfam_CAP_C,superfamily_C-terminal domain of adenylylcyclase associated protein
CAP1	10487	genome.wustl.edu	37	1	40535914	40535914	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105530.1	+1	reviewed	p.T359	0.995	260	0%	82	24.4%	152	45.3%	-	-	-	HMMSmart_SM00673,HMMPfam_CAP_C,superfamily_C-terminal domain of adenylylcyclase associated protein
RLF	6018	genome.wustl.edu	37	1	40705973	40705973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012421.3	+1	validated	p.A1867S	1.000	386	0.3%	135	21.5%	25	24%	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	NULL
TMCO2	127391	genome.wustl.edu	37	1	40713882	40713882	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008740.3	+1	validated	p.R73*	1.000	338	0%	188	23.4%	0	-	-	-	-	NULL
ZNF642	339559	genome.wustl.edu	37	1	40961084	40961084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198494.2	+1	validated	p.A312T	0.986	207	0%	155	22.6%	2	0%	possibly_damaging(0.938)	tolerated(0.11)	deleterious(0.655)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DEM1	64789	genome.wustl.edu	37	1	40980498	40980498	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022774.1	+1	provisional	p.L94	1.000	179	0%	142	19.7%	7	14.2%	-	-	-	HMMPfam_Morph_protein1
RIMS3	9783	genome.wustl.edu	37	1	41101633	41101633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014747.2	-1	validated	p.R105Q	1.000	39	0%	43	30.2%	0	-	possibly_damaging(0.756)	tolerated(0.16)	neutral(0.339)	NULL
CTPS	1503	genome.wustl.edu	37	1	41454365	41454365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001905.2	+1	validated	p.V180I	1.000	287	0%	193	19.2%	14	14.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_CTP_synth_N,superfamily_SSF52540
CTPS	1503	genome.wustl.edu	37	1	41466714	41466714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001905.2	+1	validated	p.A340V	0.775	150	0%	112	24.1%	26	38.4%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_GATase,superfamily_SSF52317
SLFNL1	200172	genome.wustl.edu	37	1	41485975	41485975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144990.3	-1	validated	p.L120I	0.004	38	0%	38	28.9%	0	-	benign(0.026)	tolerated(0.14)	neutral(0.251)	NULL
SCMH1	22955	genome.wustl.edu	37	1	41536328	41536328	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031694.2	-1	validated	p.D338	0.966	688	0%	261	24.9%	26	30.7%	-	-	-	NULL
FOXJ3	22887	genome.wustl.edu	37	1	42660606	42660606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014947.3	-1	validated	p.R297W	1.000	447	0%	306	22.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RIMKLA	284716	genome.wustl.edu	37	1	42880415	42880415	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173642.3	+1	validated	p.G316*	0.997	198	0%	43	37.2%	1	0%	-	-	-	NULL
RIMKLA	284716	genome.wustl.edu	37	1	42880423	42880423	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173642.3	+1	validated	p.S318	0.934	183	0%	40	20%	1	0%	-	-	-	NULL
ZMYND12	84217	genome.wustl.edu	37	1	42896448	42896448	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032257.4	-1	validated	p.L353	0.008	633	0%	280	21.1%	0	-	-	-	-	NULL
ZMYND12	84217	genome.wustl.edu	37	1	42896449	42896449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032257.4	-1	validated	p.E352D	0.005	665	0%	285	20.7%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
ZMYND12	84217	genome.wustl.edu	37	1	42915613	42915613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000433602	-1	known	p.P24T	0.998	83	0%	81	14.8%	0	-	unknown(0)	tolerated(0.05)	-	superfamily_TPR-like
YBX1	4904	genome.wustl.edu	37	1	43166546	43166546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004559.3	+1	validated	p.R279C	1.000	77	0%	52	28.8%	1338	37.4%	benign(0.006)	deleterious(0.04)	neutral(0.349)	NULL
CLDN19	149461	genome.wustl.edu	37	1	43205521	43205521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_148960.2	-1	reviewed	p.A72T	1.000	24	0%	30	26.7%	1	100%	benign(0.115)	deleterious(0.02)	neutral(0.392)	HMMPfam_PMP22_Claudin
LEPRE1	64175	genome.wustl.edu	37	1	43212666	43212666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000236040	-1	known	p.F778L	0.000	198	0%	273	20.9%	0	-	unknown(0)	-	-	NULL
LEPRE1	64175	genome.wustl.edu	37	1	43212758	43212758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000236040	-1	known	p.A747D	0.012	248	0.4%	383	13.8%	1	100%	unknown(0)	-	-	NULL
ZNF691	51058	genome.wustl.edu	37	1	43316968	43316968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015911.2	+1	provisional	p.K113N	1.000	105	0%	59	23.7%	8	50%	benign(0.296)	deleterious(0.05)	neutral(0.437)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF691	51058	genome.wustl.edu	37	1	43317156	43317156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015911.2	+1	provisional	p.S176N	1.000	52	0%	39	17.9%	19	52.6%	possibly_damaging(0.853)	deleterious(0.03)	deleterious(0.693)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
EBNA1BP2	10969	genome.wustl.edu	37	1	43630122	43630122	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006824.2	-1	validated	p.T305P	0.000	642	0%	426	17.6%	180	48.8%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
TIE1	7075	genome.wustl.edu	37	1	43775080	43775080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005424.2	+1	provisional	p.P404S	0.924	267	0%	363	22.9%	8	0%	benign(0)	tolerated(0.41)	neutral(0.015)	HMMPfam_ig,superfamily_SSF48726
TIE1	7075	genome.wustl.edu	37	1	43775181	43775181	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005424.2	+1	provisional	p.R437	0.947	208	0%	200	23%	7	14.2%	-	-	-	superfamily_FN_III-like,superfamily_SSF48726
TIE1	7075	genome.wustl.edu	37	1	43777992	43777992	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005424.2	+1	provisional	p.P549	0.037	41	0%	48	31.2%	15	13.3%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
MPL	4352	genome.wustl.edu	37	1	43803581	43803581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005373.2	+1	reviewed	p.A21V	0.998	65	0%	71	12.7%	0	-	benign(0.01)	tolerated(0.3)	neutral(0.029)	superfamily_Fibronectin type III
CDC20	991	genome.wustl.edu	37	1	43827938	43827938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001255.2	+1	reviewed	p.V426F	1.000	219	0%	221	17.6%	323	38.3%	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	HMMSmart_WD40,superfamily_WD40_like
ELOVL1	64834	genome.wustl.edu	37	1	43830292	43830292	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022821.2	-1	validated	p.D134	0.288	263	0%	340	24.1%	110	40.9%	-	-	-	HMMPfam_ELO
MED8	112950	genome.wustl.edu	37	1	43851783	43851783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052877.3	-1	reviewed	p.G203V	1.000	117	0%	95	17.9%	86	36%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_Arc32
SZT2	23334	genome.wustl.edu	37	1	43902883	43902883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015284.2	+1	predicted	p.A1127T	1.000	174	0%	145	26.2%	2	50%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
HYI	81888	genome.wustl.edu	37	1	43917893	43917893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031207.3	-1	validated	p.A64T	1.000	301	0%	459	10.7%	49	38.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_AP_endonuc_2,superfamily_Xyl_isomerase-like_TIM-brl
PTPRF	5792	genome.wustl.edu	37	1	44019191	44019191	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002840.3	+1	reviewed	p.E40	0.998	252	0%	176	23.9%	5	20%	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PTPRF	5792	genome.wustl.edu	37	1	44057531	44057531	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000429895	+1	known	p.G184*	1.000	45	0%	41	22%	15	53.3%	benign(0.198)	deleterious(0.02)	neutral(0.402)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRF	5792	genome.wustl.edu	37	1	44069101	44069101	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000429895	+1	known	p.A433V	0.935	74	0%	71	22.5%	29	55.1%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRF	5792	genome.wustl.edu	37	1	44070882	44070882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002840.3	+1	reviewed	p.V1053M	1.000	29	0%	31	16.1%	44	25%	benign(0.011)	tolerated(0.07)	neutral(0.320)	HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRF	5792	genome.wustl.edu	37	1	44075093	44075093	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000429895	+1	known	p.R945Q	0.001	160	0%	148	20.3%	37	56.7%	-	-	-	NULL
ST3GAL3	6487	genome.wustl.edu	37	1	44290452	44290452	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174963.2	+1	reviewed	p.E102*	0.320	284	0%	95	22.1%	0	-	-	-	-	NULL
ST3GAL3	6487	genome.wustl.edu	37	1	44364887	44364887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174963.2	+1	reviewed	p.A239V	1.000	225	0%	114	21.1%	6	50%	possibly_damaging(0.808)	tolerated(0.51)	neutral(0.313)	HMMPfam_Glyco_transf_29
ST3GAL3	6487	genome.wustl.edu	37	1	44395806	44395806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174965.1	+1	reviewed	p.L149M	0.988	116	0%	131	19.8%	5	20%	possibly_damaging(0.906)	-	-	NULL
IPO13	9670	genome.wustl.edu	37	1	44432395	44432395	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014652.3	+1	reviewed	e17-1	1.000	360	0%	323	26.9%	0	-	-	-	-	-
KLF17	128209	genome.wustl.edu	37	1	44595359	44595359	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173484.3	+1	validated	p.N139I	0.000	89	0%	52	36.5%	0	-	possibly_damaging(0.92)	deleterious(0.01)	deleterious(0.776)	NULL
PTCH2	8643	genome.wustl.edu	37	1	45293863	45293863	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003738.4	-1	reviewed	p.S570	1.000	107	0%	107	12.1%	2	0%	-	-	-	HMMPfam_Patched
PTCH2	8643	genome.wustl.edu	37	1	45294240	45294240	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003738.4	-1	reviewed	p.M510L	1.000	94	0%	94	20.2%	0	-	benign(0.007)	tolerated(0.19)	neutral(0.050)	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
EIF2B3	8891	genome.wustl.edu	37	1	45340446	45340446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020365.3	-1	reviewed	p.S369F	1.000	373	0%	363	20.1%	68	41.1%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_Trimeric LpxA-like enzymes,superfamily_Nucleotide-diphospho-sugar transferases
UROD	7389	genome.wustl.edu	37	1	45479413	45479413	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000374.3	+1	reviewed	p.R142*	1.000	188	0%	224	19.6%	120	5.8%	-	-	-	HMMPfam_URO-D,superfamily_UROD/MetE-like
ZSWIM5	57643	genome.wustl.edu	37	1	45553602	45553602	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020883.1	-1	validated	p.K301N	1.000	632	0.2%	399	23.8%	0	-	possibly_damaging(0.893)	deleterious(0.02)	deleterious(0.735)	NULL
TOE1	114034	genome.wustl.edu	37	1	45808273	45808273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025077.3	+1	validated	p.A237V	0.998	92	0%	127	23.6%	29	51.7%	benign(0)	tolerated(0.93)	-	HMMPfam_CAF1
TOE1	114034	genome.wustl.edu	37	1	45808595	45808595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025077.3	+1	validated	p.R278M	0.262	106	0%	92	21.7%	56	58.9%	possibly_damaging(0.44)	tolerated(0.08)	neutral(0.444)	HMMPfam_CAF1
TOE1	114034	genome.wustl.edu	37	1	45809130	45809130	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025077.3	+1	validated	p.N430T	0.003	210	0%	154	25.3%	72	59.7%	benign(0.032)	tolerated(0.89)	neutral(0.002)	HMMPfam_CAF1
AKR1A1	10327	genome.wustl.edu	37	1	46035610	46035610	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006066.2	+1	reviewed	p.P320	0.794	150	0%	96	19.8%	436	36.4%	-	-	-	superfamily_NAD(P)-linked oxidoreductase
CCDC17	149483	genome.wustl.edu	37	1	46088501	46088501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114938.1	-1	provisional	p.P189L	0.000	24	0%	40	32.5%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
CCDC17	149483	genome.wustl.edu	37	1	46088898	46088898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114938.1	-1	provisional	p.R130C	0.036	17	0%	21	23.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GPBP1L1	60313	genome.wustl.edu	37	1	46120974	46120974	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021639.4	-1	validated	p.F26	1.000	330	0%	103	31.1%	58	37.9%	-	-	-	NULL
IPP	3652	genome.wustl.edu	37	1	46165666	46165666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005897.2	-1	reviewed	p.R576H	1.000	377	0.3%	162	24.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00612,superfamily_Galactose oxidase central domain
IPP	3652	genome.wustl.edu	37	1	46211964	46211964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005897.2	-1	reviewed	p.Q40H	1.000	330	0.3%	428	15.2%	6	0%	benign(0.219)	deleterious(0.02)	neutral(0.405)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
PIK3R3	8503	genome.wustl.edu	37	1	46511694	46511694	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114172.1	-1	validated	p.E361	1.000	468	0%	241	16.2%	7	42.8%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
POMGNT1	55624	genome.wustl.edu	37	1	46655228	46655228	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017739.3	-1	reviewed	p.I599	1.000	109	0%	118	25.4%	56	35.7%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
POMGNT1	55624	genome.wustl.edu	37	1	46660582	46660582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017739.3	-1	reviewed	p.L196M	1.000	41	0%	88	25%	35	51.4%	probably_damaging(0.982)	tolerated(0.08)	deleterious(0.726)	NULL
POMGNT1	55624	genome.wustl.edu	37	1	46661577	46661577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017739.3	-1	reviewed	p.R147H	1.000	206	0%	221	24%	39	48.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POMGNT1	55624	genome.wustl.edu	37	1	46662646	46662646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017739.3	-1	reviewed	p.D77E	1.000	257	0%	304	14.8%	25	20%	benign(0.01)	tolerated(0.24)	neutral(0.038)	NULL
RAD54L	8438	genome.wustl.edu	37	1	46738374	46738374	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142548.1	+1	reviewed	p.K425	0.997	371	0%	203	16.3%	8	75%	-	-	-	HMMPfam_SNF2_N,superfamily_SSF52540
RAD54L	8438	genome.wustl.edu	37	1	46739888	46739888	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142548.1	+1	reviewed	p.S563	0.999	379	0%	255	19.6%	10	0%	-	-	-	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
KIAA0494	9813	genome.wustl.edu	37	1	47144290	47144290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014774.2	-1	validated	p.R444H	0.729	173	0%	139	10.8%	27	3.7%	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
CYP4B1	1580	genome.wustl.edu	37	1	47264872	47264872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099772.1	+1	reviewed	p.A40V	0.102	185	0%	64	17.2%	0	-	benign(0.012)	tolerated(0.53)	neutral(0.008)	NULL
CYP4A11	1579	genome.wustl.edu	37	1	47401278	47401278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000778.3	-1	reviewed	p.E184D	0.945	363	0%	155	21.3%	0	-	benign(0.155)	tolerated(0.72)	neutral(0.015)	HMMPfam_p450,superfamily_Cytochrome P450
PDZK1IP1	10158	genome.wustl.edu	37	1	47650691	47650691	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005764.3	-1	validated	p.S85	0.026	209	0%	127	24.4%	715	48.9%	-	-	-	NULL
AGBL4	84871	genome.wustl.edu	37	1	49005390	49005390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032785.3	-1	validated	p.V430M	0.998	286	0%	67	25.4%	0	-	possibly_damaging(0.701)	tolerated(0.47)	neutral(0.263)	superfamily_Zn-dependent exopeptidases
BEND5	79656	genome.wustl.edu	37	1	49193704	49193704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024603.2	-1	validated	p.D374N	1.000	577	0%	148	25%	4	50%	probably_damaging(0.959)	tolerated(0.09)	deleterious(0.699)	HMMPfam_BEN
ELAVL4	1996	genome.wustl.edu	37	1	50661235	50661235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144775.1	+1	validated	p.V188M	1.000	145	0%	58	22.4%	0	-	benign(0)	tolerated(0.05)	neutral(0.345)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
RNF11	26994	genome.wustl.edu	37	1	51735673	51735673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014372.4	+1	reviewed	p.R57W	1.000	141	0%	73	19.2%	26	30.7%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
RNF11	26994	genome.wustl.edu	37	1	51735742	51735742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014372.4	+1	reviewed	p.L80M	1.000	147	0%	89	23.6%	20	30%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TTC39A	22996	genome.wustl.edu	37	1	51787798	51787798	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080494.2	-1	validated	p.P12	0.011	145	0%	130	21.5%	0	-	-	-	-	NULL
OSBPL9	114883	genome.wustl.edu	37	1	52238365	52238365	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000447887	+1	known	p.A397T	0.287	490	0.2%	298	23.5%	30	43.3%	-	-	-	HMMPfam_Oxysterol_BP
NRD1	4898	genome.wustl.edu	37	1	52272567	52272567	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002525.2	-1	validated	p.K738T	1.000	406	0%	216	10.6%	68	33.8%	benign(0.054)	tolerated(0.34)	neutral(0.026)	NULL
ZFYVE9	9372	genome.wustl.edu	37	1	52704629	52704629	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004799.2	+1	reviewed	p.E514*	1.000	165	0%	47	25.5%	4	25%	-	-	-	NULL
CC2D1B	200014	genome.wustl.edu	37	1	52827190	52827190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032449.1	-1	validated	p.L105M	1.000	69	0%	115	15.7%	12	25%	possibly_damaging(0.634)	deleterious(0)	deleterious(0.666)	NULL
PRPF38A	84950	genome.wustl.edu	37	1	52878212	52878212	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032864.3	+1	validated	p.E175	1.000	363	0%	198	21.7%	71	45%	-	-	-	HMMPfam_PRP38
ZCCHC11	23318	genome.wustl.edu	37	1	52891057	52891057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009881.1	-1	validated	p.A1612T	1.000	313	0%	127	19.7%	21	38%	possibly_damaging(0.527)	tolerated(0.18)	neutral(0.234)	NULL
ZCCHC11	23318	genome.wustl.edu	37	1	52943484	52943484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009881.1	-1	validated	p.Y640C	1.000	286	0%	187	17.6%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAP_assoc,superfamily_PAP/OAS1 substrate-binding domain
FAM159A	348378	genome.wustl.edu	37	1	53108639	53108639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042693.1	+1	validated	p.T96I	0.635	434	0%	270	24.8%	1	0%	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	NULL
ZYG11B	79699	genome.wustl.edu	37	1	53237065	53237065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024646.2	+1	validated	p.S190R	1.000	155	0%	83	12%	4	50%	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	superfamily_ARM repeat,superfamily_RNI-like
SCP2	6342	genome.wustl.edu	37	1	53416451	53416451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002979.3	+1	reviewed	p.A75V	1.000	445	0%	226	11.9%	20	40%	benign(0.015)	tolerated(0.11)	neutral(0.272)	HMMPfam_Thiolase_N,superfamily_Thiolase-like
PODN	127435	genome.wustl.edu	37	1	53543463	53543463	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153703.3	+1	validated	p.E330A	1.000	106	0%	86	30.2%	1	0%	benign(0.176)	tolerated(0.7)	neutral(0.018)	HMMPfam_LRR_1,superfamily_SSF52047,superfamily_SSF52058
PODN	127435	genome.wustl.edu	37	1	53546466	53546466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153703.3	+1	validated	p.L575M	1.000	96	0%	92	13%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,superfamily_SSF52047
PODN	127435	genome.wustl.edu	37	1	53547755	53547755	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153703.3	+1	validated	p.I636M	0.622	156	0%	131	18.3%	1	0%	benign(0.07)	deleterious(0.04)	neutral(0.354)	superfamily_SSF52047
SLC1A7	6512	genome.wustl.edu	37	1	53556426	53556426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006671.4	-1	validated	p.D362N	1.000	100	0%	112	27.7%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_SDF
SLC1A7	6512	genome.wustl.edu	37	1	53559205	53559205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006671.4	-1	validated	p.S242I	0.998	34	0%	31	19.4%	0	-	possibly_damaging(0.782)	deleterious(0.03)	deleterious(0.657)	HMMPfam_SDF
CPT2	1376	genome.wustl.edu	37	1	53676775	53676775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000098.2	+1	reviewed	p.R477W	0.992	106	0%	51	15.7%	44	47.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
LRP8	7804	genome.wustl.edu	37	1	53732180	53732180	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004631.3	-1	reviewed	p.I464	1.000	214	0%	165	13.9%	5	20%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
DMRTB1	63948	genome.wustl.edu	37	1	53930490	53930490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033067.1	+1	provisional	p.V311I	0.014	328	0%	374	16.6%	0	-	benign(0.001)	tolerated(0.75)	neutral(0.002)	NULL
GLIS1	148979	genome.wustl.edu	37	1	53990492	53990492	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_147193.2	-1	validated	p.H342	0.955	349	0%	283	19.8%	3	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LDLRAD1	388633	genome.wustl.edu	37	1	54476073	54476073	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010978.2	-1	provisional	p.P117	0.996	120	0%	132	11.4%	5	20%	-	-	-	NULL
TMEM59	9528	genome.wustl.edu	37	1	54509073	54509073	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004872.3	-1	provisional	p.A172	0.879	231	0%	142	14.8%	299	20.4%	-	-	-	NULL
SSBP3	23648	genome.wustl.edu	37	1	54722844	54722844	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145716.2	-1	validated	p.R155*	1.000	180	0%	189	11.1%	45	0%	-	-	-	HMMPfam_SSDP
FAM151A	338094	genome.wustl.edu	37	1	55089007	55089007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176782.2	-1	validated	p.C21Y	0.000	219	0%	95	17.9%	1	0%	benign(0.092)	tolerated(0.07)	neutral(0.326)	NULL
HEATR8	374977	genome.wustl.edu	37	1	55130864	55130864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039464.2	+1	validated	p.C419Y	0.001	183	0%	80	25%	0	-	possibly_damaging(0.74)	deleterious(0)	deleterious(0.716)	NULL
HEATR8	374977	genome.wustl.edu	37	1	55144992	55144992	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039464.2	+1	validated	p.L702	1.000	54	0%	31	25.8%	0	-	-	-	-	superfamily_ARM repeat
HEATR8	374977	genome.wustl.edu	37	1	55174741	55174741	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039464.2	+1	validated	p.V1241G	1.000	201	0%	153	24.8%	1	0%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	superfamily_ARM repeat
C1orf177	163747	genome.wustl.edu	37	1	55280625	55280625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001110533.1	+1	validated	p.K321N	0.000	174	0%	141	16.3%	0	-	possibly_damaging(0.892)	tolerated(0.5)	neutral(0.361)	NULL
USP24	23358	genome.wustl.edu	37	1	55557771	55557771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015306.2	-1	validated	p.C2000Y	1.000	375	0%	159	21.4%	7	42.8%	benign(0.002)	tolerated(0.1)	neutral(0.286)	NULL
USP24	23358	genome.wustl.edu	37	1	55569640	55569640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015306.2	-1	validated	p.A1485D	1.000	224	0%	95	21.1%	5	40%	possibly_damaging(0.814)	deleterious(0.01)	deleterious(0.713)	NULL
C1orf168	199920	genome.wustl.edu	37	1	57206385	57206385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004303.4	-1	validated	p.S563L	0.175	508	0%	192	18.2%	2	0%	benign(0.001)	tolerated(0.41)	neutral(0.015)	NULL
MYSM1	114803	genome.wustl.edu	37	1	59132739	59132739	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001085487.1	-1	provisional	p.R668*	1.000	210	0%	67	25.4%	0	-	-	-	-	HMMPfam_Mov34,HMMSmart_SM00232,superfamily_JAB1/MPN domain
FGGY	55277	genome.wustl.edu	37	1	60133030	60133030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113411.1	+1	validated	p.L482I	1.000	388	0%	208	20.2%	24	62.5%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_FGGY_C,superfamily_SSF53067
FGGY	55277	genome.wustl.edu	37	1	60228223	60228223	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113411.1	+1	validated	p.Q565	1.000	282	0%	102	17.6%	15	60%	-	-	-	superfamily_SSF53067
HOOK1	51361	genome.wustl.edu	37	1	60306031	60306031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000371208	+1	known	p.L197M	1.000	371	0%	145	26.2%	3	66.6%	possibly_damaging(0.522)	tolerated(0.21)	neutral(0.220)	HMMPfam_HOOK,superfamily_Prefoldin
NFIA	4774	genome.wustl.edu	37	1	61892169	61892169	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145512.1	+1	reviewed	p.R530*	1.000	332	0%	120	20%	0	-	-	-	-	HMMPfam_CTF_NFI
NFIA	4774	genome.wustl.edu	37	1	61892191	61892191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145512.1	+1	reviewed	p.R537Q	1.000	319	0%	119	20.2%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_CTF_NFI
INADL	10207	genome.wustl.edu	37	1	62574183	62574183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176877.2	+1	reviewed	p.Q1484H	1.000	439	0%	151	19.2%	9	77.7%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
INADL	10207	genome.wustl.edu	37	1	62579829	62579829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176877.2	+1	reviewed	p.H1522Q	0.995	209	0%	61	13.1%	6	16.6%	benign(0.001)	tolerated(0.63)	neutral(0.004)	NULL
L1TD1	54596	genome.wustl.edu	37	1	62676533	62676533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019079.4	+1	validated	p.R696K	0.110	189	0%	104	21.2%	0	-	possibly_damaging(0.888)	tolerated(0.08)	deleterious(0.647)	HMMPfam_Transposase_22
USP1	7398	genome.wustl.edu	37	1	62916114	62916114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017415.1	+1	reviewed	p.E607G	1.000	311	0%	180	13.9%	48	22.9%	possibly_damaging(0.949)	tolerated(0.11)	deleterious(0.665)	HMMPfam_UCH,superfamily_SSF54001
DOCK7	85440	genome.wustl.edu	37	1	62923376	62923376	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000454575	-1	known	p.V1234M	1.000	450	0%	249	23.7%	18	83.3%	-	-	-	HMMPfam_Ded_cyto
DOCK7	85440	genome.wustl.edu	37	1	62941757	62941757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033407.2	-1	validated	p.C1871Y	1.000	623	0%	484	23.8%	11	18.1%	possibly_damaging(0.444)	deleterious(0.01)	deleterious(0.550)	NULL
ANGPTL3	27329	genome.wustl.edu	37	1	63063277	63063277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014495.2	+1	reviewed	p.V14I	0.910	461	0%	173	20.8%	0	-	possibly_damaging(0.442)	tolerated(0.1)	neutral(0.431)	NULL
ANGPTL3	27329	genome.wustl.edu	37	1	63064447	63064447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014495.2	+1	reviewed	p.Q192H	0.999	405	0.2%	215	19.5%	0	-	possibly_damaging(0.862)	tolerated(0.08)	deleterious(0.633)	NULL
DOCK7	85440	genome.wustl.edu	37	1	63091070	63091070	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033407.2	-1	validated	p.R429*	1.000	178	0%	131	16.8%	3	0%	-	-	-	NULL
DOCK7	85440	genome.wustl.edu	37	1	63119815	63119815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033407.2	-1	validated	p.A54S	1.000	134	0.7%	62	16.1%	1	0%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
ALG6	29929	genome.wustl.edu	37	1	63876877	63876877	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013339.3	+1	reviewed	p.C185	1.000	410	0%	140	22.1%	23	26%	-	-	-	HMMPfam_Alg6_Alg8
PGM1	5236	genome.wustl.edu	37	1	64100678	64100678	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002633.2	+1	reviewed	p.F287	1.000	147	0%	68	13.2%	67	13.4%	-	-	-	HMMPfam_PGM_PMM_II,superfamily_Phosphoglucomutase first 3 domains
PGM1	5236	genome.wustl.edu	37	1	64120009	64120009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002633.2	+1	reviewed	p.R491C	0.999	229	0%	69	14.5%	93	13.9%	possibly_damaging(0.949)	deleterious(0.02)	deleterious(0.776)	HMMPfam_PGM_PMM_IV,superfamily_Phosphoglucomutase C-terminal domain
ROR1	4919	genome.wustl.edu	37	1	64643851	64643851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005012.2	+1	validated	p.Q709H	1.000	141	0%	25	16%	2	0%	benign(0.213)	tolerated(0.07)	neutral(0.340)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ROR1	4919	genome.wustl.edu	37	1	64644309	64644309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005012.2	+1	validated	p.S862L	1.000	154	0%	50	14%	2	100%	possibly_damaging(0.829)	deleterious(0)	deleterious(0.759)	NULL
UBE2U	148581	genome.wustl.edu	37	1	64671404	64671404	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152489.1	+1	provisional	e2+1	1.000	378	0%	550	20.9%	0	-	-	-	-	-
CACHD1	57685	genome.wustl.edu	37	1	65142667	65142667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020925.2	+1	validated	p.S971I	1.000	126	0%	46	21.7%	15	53.3%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
RAVER2	55225	genome.wustl.edu	37	1	65234340	65234340	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018211.3	+1	validated	p.E84A	1.000	660	0%	505	14.5%	2	0%	possibly_damaging(0.949)	tolerated(0.11)	deleterious(0.665)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
RAVER2	55225	genome.wustl.edu	37	1	65273143	65273143	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018211.3	+1	validated	p.E543*	0.095	30	0%	18	38.9%	2	0%	-	-	-	NULL
JAK1	3716	genome.wustl.edu	37	1	65332611	65332611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002227.2	-1	reviewed	p.V310I	0.000	315	0.3%	168	25%	10	30%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
JAK1	3716	genome.wustl.edu	37	1	65332691	65332691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002227.2	-1	reviewed	p.A283V	1.000	378	0%	206	14.6%	29	24.1%	benign(0.008)	tolerated(0.2)	neutral(0.049)	HMMSmart_B41
DNAJC6	9829	genome.wustl.edu	37	1	65871727	65871727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014787.2	+1	validated	p.S744F	1.000	319	0%	178	20.8%	0	-	possibly_damaging(0.794)	tolerated(0.65)	neutral(0.301)	NULL
DNAJC6	9829	genome.wustl.edu	37	1	65874418	65874418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014787.2	+1	validated	p.E805D	1.000	336	0.3%	203	13.3%	0	-	possibly_damaging(0.55)	tolerated(0.07)	deleterious(0.506)	NULL
PDE4B	5142	genome.wustl.edu	37	1	66384303	66384303	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037341.1	+1	reviewed	p.C22	0.994	194	0%	135	28.9%	0	-	-	-	-	NULL
SGIP1	84251	genome.wustl.edu	37	1	67147933	67147933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032291.2	+1	validated	p.S399F	1.000	123	0%	49	20.4%	0	-	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
IL12RB2	3595	genome.wustl.edu	37	1	67794053	67794053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001559.2	+1	reviewed	p.T217I	0.759	426	0%	240	23.7%	0	-	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	superfamily_Fibronectin type III
IL12RB2	3595	genome.wustl.edu	37	1	67796420	67796420	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000441640	+1	known	p.L163I	1.000	386	0%	153	23.5%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SERBP1	26135	genome.wustl.edu	37	1	67880914	67880914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018067.1	-1	validated	p.G369S	1.000	98	0%	77	22.1%	633	40.9%	benign(0.115)	tolerated(0.56)	neutral(0.015)	NULL
DIRAS3	9077	genome.wustl.edu	37	1	68512595	68512595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004675.2	-1	reviewed	p.A129V	1.000	115	0%	137	19%	2	0%	benign(0.025)	tolerated(0.13)	neutral(0.254)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
WLS	79971	genome.wustl.edu	37	1	68659840	68659840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002292.2	-1	validated	p.K57N	0.451	224	0%	113	18.6%	32	21.8%	benign(0.362)	tolerated(0.14)	neutral(0.364)	NULL
RPE65	6121	genome.wustl.edu	37	1	68906646	68906646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000329.2	-1	reviewed	p.T178I	1.000	303	0%	191	13.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RPE65
DEPDC1	55635	genome.wustl.edu	37	1	68943557	68943557	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114120.1	-1	validated	p.T737	1.000	179	0%	72	20.8%	13	38.4%	-	-	-	NULL
DEPDC1	55635	genome.wustl.edu	37	1	68954101	68954101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114120.1	-1	validated	p.A226D	1.000	772	0%	563	19%	2	100%	benign(0.196)	tolerated(0.41)	neutral(0.034)	superfamily_Rho_GAP
LRRC7	57554	genome.wustl.edu	37	1	70505388	70505388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020794.2	+1	validated	p.P1256L	1.000	124	0%	50	12%	0	-	possibly_damaging(0.773)	deleterious(0.01)	deleterious(0.693)	NULL
SRSF11	9295	genome.wustl.edu	37	1	70716363	70716363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004768.2	+1	reviewed	p.P444S	0.075	199	0%	90	23.3%	58	39.6%	possibly_damaging(0.789)	tolerated(0.67)	neutral(0.298)	NULL
ANKRD13C	81573	genome.wustl.edu	37	1	70736583	70736583	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030816.4	-1	validated	p.E484A	1.000	298	0%	101	17.8%	13	38.4%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
FPGT	8790	genome.wustl.edu	37	1	74670439	74670439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003838.2	+1	reviewed	p.M236I	1.000	176	0%	194	16.5%	11	36.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Fucokinase
TNNI3K	51086	genome.wustl.edu	37	1	74957890	74957890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001112808.1	+1	validated	p.R865I	0.575	399	0.3%	134	19.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
C1orf173	127254	genome.wustl.edu	37	1	75055368	75055368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002912.4	-1	validated	p.S708I	0.559	346	0%	104	17.3%	0	-	possibly_damaging(0.677)	tolerated(0.12)	deleterious(0.502)	NULL
C1orf173	127254	genome.wustl.edu	37	1	75072553	75072553	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002912.4	-1	validated	p.P407	0.898	167	0%	88	20.5%	0	-	-	-	-	NULL
ACADM	34	genome.wustl.edu	37	1	76198571	76198571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127328.1	+1	reviewed	p.L88F	1.000	212	0%	246	24%	23	56.5%	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like
ACADM	34	genome.wustl.edu	37	1	76211529	76211529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127328.1	+1	reviewed	p.A217V	1.000	294	0%	175	18.9%	44	43.1%	benign(0.002)	tolerated(0.29)	neutral(0.029)	superfamily_Acyl-CoA dehydrogenase NM domain-like
RABGGTB	5876	genome.wustl.edu	37	1	76254926	76254926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004582.2	+1	provisional	p.R65H	1.000	499	0%	304	20.1%	26	42.3%	probably_damaging(0.991)	tolerated(0.11)	deleterious(0.716)	superfamily_Terpenoid cyclases/Protein prenyltransferases
MSH4	4438	genome.wustl.edu	37	1	76378512	76378512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002440.2	+1	validated	p.K917N	1.000	155	0%	93	32.3%	1	0%	possibly_damaging(0.893)	deleterious(0.02)	deleterious(0.735)	NULL
ST6GALNAC3	256435	genome.wustl.edu	37	1	76779638	76779638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152996.2	+1	validated	p.R56Q	1.000	436	0%	77	14.3%	2	0%	benign(0.011)	tolerated(0.5)	neutral(0.011)	HMMPfam_Glyco_transf_29
ST6GALNAC5	81849	genome.wustl.edu	37	1	77528702	77528702	+	Silent	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030965.1	+1	provisional	p.P274	0.099	328	0%	145	13.1%	0	-	-	-	-	HMMPfam_Glyco_transf_29
PIGK	10026	genome.wustl.edu	37	1	77632517	77632517	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005482.2	-1	reviewed	e5-2	1.000	79	0%	49	14.3%	0	-	-	-	-	-
ZZZ3	26009	genome.wustl.edu	37	1	78031830	78031830	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015534.4	-1	provisional	p.R835	1.000	186	0%	56	23.2%	15	46.6%	-	-	-	HMMPfam_ZZ,PatternScan_ZF_ZZ_1
ZZZ3	26009	genome.wustl.edu	37	1	78044474	78044474	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015534.4	-1	provisional	p.Y721	1.000	418	0%	292	25.3%	15	40%	-	-	-	NULL
NEXN	91624	genome.wustl.edu	37	1	78395074	78395074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144573.3	+1	reviewed	p.S313N	1.000	372	0%	172	17.4%	3	0%	probably_damaging(0.99)	tolerated(0.05)	deleterious(0.787)	NULL
NEXN	91624	genome.wustl.edu	37	1	78407890	78407890	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144573.3	+1	reviewed	p.Q552H	0.781	174	0%	53	20.8%	3	33.3%	possibly_damaging(0.807)	deleterious(0.01)	deleterious(0.710)	NULL
DNAJB4	11080	genome.wustl.edu	37	1	78481784	78481784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007034.3	+1	provisional	p.M289I	1.000	347	0%	122	23%	6	33.3%	benign(0.051)	tolerated(0.36)	neutral(0.023)	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
GIPC2	54810	genome.wustl.edu	37	1	78585179	78585179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017655.4	+1	validated	p.E237G	0.988	410	0%	129	16.3%	2	0%	possibly_damaging(0.767)	deleterious(0.02)	deleterious(0.667)	NULL
PTGFR	5737	genome.wustl.edu	37	1	78958952	78958952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000959.3	+1	reviewed	p.R175Q	0.990	477	0%	668	19.3%	0	-	probably_damaging(0.964)	tolerated(0.26)	neutral(0.441)	HMMPfam_7tm_1,superfamily_SSF81321
IFI44L	10964	genome.wustl.edu	37	1	79094666	79094666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006820.2	+1	validated	p.R170M	0.000	306	0%	83	18.1%	24	8.3%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	superfamily_P-loop containing nucleoside triphosphate hydrolases
IFI44L	10964	genome.wustl.edu	37	1	79095507	79095507	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006820.2	+1	validated	p.K210	0.990	341	0%	89	15.7%	11	27.2%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
IFI44	10561	genome.wustl.edu	37	1	79115906	79115906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006417.4	+1	validated	p.W9L	0.010	172	0%	82	17.1%	23	43.4%	probably_damaging(0.954)	tolerated(0.18)	neutral(0.454)	NULL
IFI44	10561	genome.wustl.edu	37	1	79120887	79120887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006417.4	+1	validated	p.S228F	0.002	271	0%	69	17.4%	58	31%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF52540
ELTD1	64123	genome.wustl.edu	37	1	79383599	79383599	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022159.3	-1	validated	p.F533C	1.000	281	0%	65	30.8%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2
LPHN2	23266	genome.wustl.edu	37	1	82415960	82415960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012302.2	+1	reviewed	p.P429H	1.000	248	0.4%	92	21.7%	10	30%	possibly_damaging(0.455)	deleterious(0)	deleterious(0.594)	NULL
LPHN2	23266	genome.wustl.edu	37	1	82456345	82456345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012302.2	+1	reviewed	p.D1243G	0.995	107	0%	20	25%	44	40.9%	benign(0.103)	tolerated(0.16)	neutral(0.068)	HMMPfam_Latrophilin
SPATA1	100505741	genome.wustl.edu	37	1	85018717	85018717	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001081472.1	+1	validated	e12-1	1.000	31	0%	13	46.2%	0	-	-	-	-	-
CTBS	1486	genome.wustl.edu	37	1	85029037	85029037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004388.2	-1	validated	p.R287H	0.000	114	0%	160	14.4%	25	36%	benign(0.008)	tolerated(0.38)	neutral(0.018)	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
SSX2IP	117178	genome.wustl.edu	37	1	85121534	85121534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014021.3	-1	reviewed	p.A457D	1.000	371	0.3%	219	21%	18	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LPAR3	23566	genome.wustl.edu	37	1	85331609	85331609	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012152.2	-1	reviewed	p.F65	1.000	165	0%	54	11.1%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SYDE2	84144	genome.wustl.edu	37	1	85656164	85656164	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032184.1	-1	validated	p.T339	0.000	502	0%	327	19.9%	1	0%	-	-	-	NULL
C1orf52	148423	genome.wustl.edu	37	1	85725199	85725199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198077.3	-1	validated	p.D40N	0.005	47	0%	59	23.7%	18	33.3%	benign(0.001)	tolerated(0.54)	neutral(0.007)	NULL
ZNHIT6	54680	genome.wustl.edu	37	1	86123550	86123550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017953.3	-1	validated	p.D451G	1.000	291	0%	65	35.4%	12	41.6%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ZNHIT6	54680	genome.wustl.edu	37	1	86171826	86171826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017953.3	-1	validated	p.V284M	1.000	310	0%	180	21.7%	12	8.3%	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	NULL
COL24A1	255631	genome.wustl.edu	37	1	86210409	86210409	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152890.5	-1	validated	p.R1538*	0.998	711	0%	432	19.7%	0	-	-	-	-	HMMPfam_COLFI,HMMSmart_SM00038
COL24A1	255631	genome.wustl.edu	37	1	86308067	86308067	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152890.5	-1	validated	p.G1158*	1.000	158	0%	84	27.4%	0	-	-	-	-	HMMPfam_Collagen
COL24A1	255631	genome.wustl.edu	37	1	86591029	86591029	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152890.5	-1	validated	p.H330	0.001	273	0.4%	126	19%	0	-	-	-	-	NULL
CLCA2	9635	genome.wustl.edu	37	1	86898078	86898078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006536.5	+1	reviewed	p.F204S	0.027	429	0%	95	14.7%	0	-	probably_damaging(0.996)	tolerated(0.4)	deleterious(0.478)	HMMPfam_CLCA_N
CLCA4	22802	genome.wustl.edu	37	1	87012892	87012892	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012128.3	+1	reviewed	p.G30	0.995	548	0%	614	21.8%	0	-	-	-	-	HMMPfam_CLCA_N
CLCA4	22802	genome.wustl.edu	37	1	87031605	87031605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012128.3	+1	reviewed	p.I286V	0.000	308	0%	167	19.2%	1	100%	benign(0.001)	tolerated(0.45)	neutral(0.012)	NULL
CLCA4	22802	genome.wustl.edu	37	1	87036934	87036934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012128.3	+1	reviewed	p.T453A	0.995	491	0%	141	27%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
SH3GLB1	51100	genome.wustl.edu	37	1	87207962	87207962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016009.3	+1	validated	p.A278V	0.016	414	0%	158	10.8%	85	20%	benign(0)	tolerated(0.45)	neutral(0.012)	superfamily_SH3-domain
SH3GLB1	51100	genome.wustl.edu	37	1	87208111	87208111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016009.3	+1	validated	p.A328S	1.000	253	0%	91	14.3%	111	36.9%	possibly_damaging(0.854)	tolerated(0.1)	deleterious(0.615)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ENSG00000183291	0	genome.wustl.edu	37	1	87379761	87379761	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000401030	-1	known	p.L9	0.000	97	0%	143	16.1%	104	25%	-	-	-	NULL
HS2ST1	9653	genome.wustl.edu	37	1	87538728	87538728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012262.3	+1	reviewed	p.N79S	1.000	338	0%	111	18.9%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HS2ST,superfamily_P-loop containing nucleoside triphosphate hydrolases
GTF2B	2959	genome.wustl.edu	37	1	89323160	89323160	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001514.5	-1	reviewed	p.A182	0.110	49	0%	22	18.2%	35	42.8%	-	-	-	HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_TFIIB
CCBL2	56267	genome.wustl.edu	37	1	89408756	89408756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000260508	-1	known	p.V412I	1.000	188	0%	83	9.6%	78	19.2%	benign(0.005)	tolerated(0.51)	neutral(0.009)	superfamily_PLP-dependent transferases
GBP3	2635	genome.wustl.edu	37	1	89486390	89486390	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018284.2	-1	reviewed	p.I5	0.898	398	0%	294	19.4%	20	40%	-	-	-	NULL
GBP2	2634	genome.wustl.edu	37	1	89585915	89585915	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004120.3	-1	reviewed	p.T125	1.000	542	0%	369	20.9%	168	17.8%	-	-	-	HMMPfam_GBP,superfamily_SSF52540
GBP7	388646	genome.wustl.edu	37	1	89615207	89615207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207398.2	-1	validated	p.A307V	0.006	151	0%	80	27.5%	0	-	possibly_damaging(0.507)	tolerated(0.25)	neutral(0.207)	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
GBP4	115361	genome.wustl.edu	37	1	89651146	89651146	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052941.4	-1	validated	p.E572*	0.000	253	0%	216	28.7%	40	15%	-	-	-	HMMPfam_GBP_C,superfamily_GBP
LRRC8D	55144	genome.wustl.edu	37	1	90398964	90398964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134479.1	+1	validated	p.A113T	1.000	241	0%	111	23.4%	13	53.8%	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
LRRC8D	55144	genome.wustl.edu	37	1	90399262	90399262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134479.1	+1	validated	p.A212V	1.000	145	0%	77	24.7%	17	64.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF326	284695	genome.wustl.edu	37	1	90475806	90475806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182976.2	+1	validated	p.A259T	0.997	400	0%	203	14.8%	12	8.3%	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
BARHL2	343472	genome.wustl.edu	37	1	91182270	91182270	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020063.1	-1	validated	p.S161	1.000	174	0%	235	26%	0	-	-	-	-	NULL
ZNF644	84146	genome.wustl.edu	37	1	91405848	91405848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201269.1	-1	validated	p.E355K	1.000	203	0%	105	23.8%	7	57.1%	possibly_damaging(0.608)	deleterious(0.01)	deleterious(0.616)	NULL
HFM1	164045	genome.wustl.edu	37	1	91784732	91784732	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017975.3	-1	validated	p.K905	0.996	184	0%	93	16.1%	0	-	-	-	-	HMMPfam_Sec63
CDC7	8317	genome.wustl.edu	37	1	91978856	91978856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134419.1	+1	reviewed	p.D272Y	1.000	188	0%	77	20.8%	3	0%	possibly_damaging(0.918)	tolerated(0.1)	deleterious(0.655)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CDC7	8317	genome.wustl.edu	37	1	91980446	91980446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134419.1	+1	reviewed	p.T330I	1.000	300	0%	101	18.8%	5	60%	possibly_damaging(0.839)	tolerated(0.06)	deleterious(0.643)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TGFBR3	7049	genome.wustl.edu	37	1	92187516	92187516	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003243.3	-1	validated	p.N357K	0.995	211	0%	78	25.6%	1	0%	benign(0.069)	tolerated(0.77)	neutral(0.005)	NULL
BRDT	676	genome.wustl.edu	37	1	92428330	92428330	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001726.3	+1	validated	p.Q7*	0.997	357	0%	228	17.1%	0	-	-	-	-	superfamily_Bromodomain
EPHX4	253152	genome.wustl.edu	37	1	92528719	92528719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173567.4	+1	validated	p.V322A	1.000	313	0%	91	22%	2	0%	benign(0.172)	tolerated(0.05)	neutral(0.361)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
KIAA1107	23285	genome.wustl.edu	37	1	92643383	92643383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015237.2	+1	validated	p.P352H	0.992	166	0%	84	16.7%	1	0%	possibly_damaging(0.845)	deleterious(0)	deleterious(0.768)	NULL
KIAA1107	23285	genome.wustl.edu	37	1	92647995	92647995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015237.2	+1	validated	p.H1147Q	0.948	91	0%	42	16.7%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RPAP2	79871	genome.wustl.edu	37	1	92789039	92789039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000370343	+1	known	p.A188S	0.036	218	0.5%	110	21.8%	11	63.6%	benign(0.253)	tolerated(0.75)	neutral(0.028)	NULL
GFI1	2672	genome.wustl.edu	37	1	92941683	92941683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127215.1	-1	reviewed	p.T391I	1.000	270	0%	264	24.6%	8	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_SSF57667
EVI5	7813	genome.wustl.edu	37	1	92979293	92979293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005665.4	-1	validated	p.L785M	0.057	174	0%	62	19.4%	2	50%	possibly_damaging(0.437)	deleterious(0)	deleterious(0.587)	NULL
RPL5	6125	genome.wustl.edu	37	1	93298990	93298990	+	Silent	SNP	C	C	T	rs148673599	byFrequency	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000969.3	+1	reviewed	p.Y16	1.000	479	0%	410	17.6%	928	37.9%	-	-	-	superfamily_Translational machinery components
FAM69A	388650	genome.wustl.edu	37	1	93316421	93316421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001006605.3	-1	reviewed	p.T94I	1.000	426	0%	188	21.3%	2	0%	benign(0.382)	tolerated(0.16)	neutral(0.181)	NULL
TMED5	50999	genome.wustl.edu	37	1	93645689	93645689	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016040.4	-1	validated	p.T37	0.995	63	0%	63	15.9%	36	38.8%	-	-	-	HMMPfam_EMP24_GP25L
BCAR3	8412	genome.wustl.edu	37	1	94033320	94033320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003567.2	-1	reviewed	p.S688I	1.000	266	0%	125	15.2%	10	20%	possibly_damaging(0.832)	tolerated(0.24)	neutral(0.354)	HMMSmart_SM00147,superfamily_Ras GEF
BCAR3	8412	genome.wustl.edu	37	1	94047902	94047902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003567.2	-1	reviewed	p.D548N	0.324	412	0%	292	22.3%	13	38.4%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMSmart_SM00147,superfamily_Ras GEF
BCAR3	8412	genome.wustl.edu	37	1	94048087	94048087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003567.2	-1	reviewed	p.P486H	0.010	204	0.5%	166	13.3%	7	28.5%	benign(0.001)	tolerated(0.26)	neutral(0.034)	superfamily_Ras GEF
DNTTIP2	30836	genome.wustl.edu	37	1	94342648	94342648	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014597.3	-1	provisional	p.H281	0.000	306	0%	328	11%	29	20.6%	-	-	-	NULL
ABCA4	24	genome.wustl.edu	37	1	94466604	94466604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000350.2	-1	reviewed	p.V2114M	0.959	168	0.6%	83	22.9%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
ABCD3	5825	genome.wustl.edu	37	1	94965093	94965093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002858.3	+1	reviewed	p.L555I	1.000	439	0%	115	17.4%	29	44.8%	possibly_damaging(0.513)	tolerated(0.14)	neutral(0.422)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTBP2	58155	genome.wustl.edu	37	1	97243419	97243419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021190.2	+1	reviewed	p.K209E	1.000	234	0%	189	25.9%	5	60%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
DPYD	1806	genome.wustl.edu	37	1	97771762	97771762	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000110.3	-1	reviewed	p.I717S	1.000	207	0%	75	25.3%	11	18.1%	possibly_damaging(0.742)	tolerated(0.08)	deleterious(0.572)	HMMPfam_DHO_dh,superfamily_SSF51395
DPYD	1806	genome.wustl.edu	37	1	98039457	98039457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000110.3	-1	reviewed	p.G400C	1.000	358	0%	149	16.1%	2	0%	benign(0.406)	deleterious(0.01)	deleterious(0.536)	HMMPfam_Pyr_redox_2,superfamily_SSF51971
SNX7	51375	genome.wustl.edu	37	1	99164344	99164344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015976.3	+1	reviewed	p.K307N	0.015	231	0%	136	19.9%	53	64.1%	benign(0.202)	tolerated(0.44)	neutral(0.032)	NULL
PALMD	54873	genome.wustl.edu	37	1	100154514	100154514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017734.4	+1	validated	p.G233D	0.989	117	0%	30	16.7%	24	25%	benign(0.005)	tolerated(0.47)	neutral(0.011)	HMMPfam_Paralemmin
PALMD	54873	genome.wustl.edu	37	1	100154788	100154788	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017734.4	+1	validated	p.P324	0.009	184	0%	65	15.4%	39	38.4%	-	-	-	NULL
AGL	178	genome.wustl.edu	37	1	100340251	100340251	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000028.2	+1	reviewed	p.R323*	0.081	227	0.4%	164	25%	1	0%	-	-	-	superfamily_(Trans)glycosidases
AGL	178	genome.wustl.edu	37	1	100376393	100376393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000028.2	+1	reviewed	p.A1276S	1.000	379	0%	154	15.6%	1	0%	probably_damaging(1)	tolerated(0.63)	deleterious(0.503)	superfamily_Six-hairpin glycosidases,HMMPfam_GDE_C
SASS6	163786	genome.wustl.edu	37	1	100584687	100584687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194292.1	-1	validated	p.A186S	1.000	505	0%	435	23.4%	5	60%	benign(0)	tolerated(1)	-	NULL
LRRC39	127495	genome.wustl.edu	37	1	100621764	100621764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144620.2	-1	provisional	p.S208N	1.000	280	0%	235	26.4%	0	-	possibly_damaging(0.68)	tolerated(0.86)	neutral(0.243)	HMMSmart_SM00369,superfamily_L domain-like
LRRC39	127495	genome.wustl.edu	37	1	100621828	100621828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144620.2	-1	provisional	p.D187N	0.999	335	0.3%	269	15.6%	1	0%	benign(0)	tolerated(0.34)	neutral(0.023)	HMMSmart_SM00369,superfamily_L domain-like
DBT	1629	genome.wustl.edu	37	1	100672120	100672120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001918.2	-1	reviewed	p.I364V	0.685	318	0%	292	13%	7	0%	benign(0)	tolerated(0.34)	neutral(0.023)	HMMPfam_2-oxoacid_dh,superfamily_CoA-dependent acyltransferases
OLFM3	118427	genome.wustl.edu	37	1	102270190	102270190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000424771	-1	known	p.S197L	0.889	246	0%	49	22.4%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_OLF,HMMSmart_SM00284
COL11A1	1301	genome.wustl.edu	37	1	103431087	103431087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080629.2	-1	reviewed	p.G970C	1.000	108	0%	60	20%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
COL11A1	1301	genome.wustl.edu	37	1	103483383	103483383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080629.2	-1	reviewed	p.G481D	0.999	149	0%	133	17.3%	0	-	unknown(0)	deleterious(0.03)	-	HMMPfam_Collagen
AMY2B	280	genome.wustl.edu	37	1	104120214	104120214	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020978.3	+1	reviewed	p.R402*	1.000	322	0%	118	20.3%	53	1.8%	-	-	-	HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_(Trans)glycosidases
HENMT1	113802	genome.wustl.edu	37	1	109191341	109191341	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102592.1	-1	validated	p.L343	0.829	281	0%	244	13.1%	17	23.5%	-	-	-	NULL
AKNAD1	254268	genome.wustl.edu	37	1	109358817	109358817	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152763.3	-1	validated	p.R829	0.143	621	0%	401	22.4%	0	-	-	-	-	NULL
GPSM2	29899	genome.wustl.edu	37	1	109441271	109441271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013296.4	+1	validated	p.L189I	0.973	87	0%	49	16.3%	5	60%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF48452
GPSM2	29899	genome.wustl.edu	37	1	109466822	109466822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013296.4	+1	validated	p.L601I	1.000	280	0%	135	20.7%	24	45.8%	probably_damaging(0.965)	tolerated(0.14)	deleterious(0.656)	HMMPfam_GoLoco,HMMSmart_GoLoco
CLCC1	23155	genome.wustl.edu	37	1	109486118	109486118	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001048210.1	-1	validated	p.W227*	1.000	221	0%	109	24.8%	11	9%	-	-	-	HMMPfam_MCLC
WDR47	22911	genome.wustl.edu	37	1	109514090	109514090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142550.1	-1	validated	p.A916T	1.000	288	0.3%	251	20.3%	6	50%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CELSR2	1952	genome.wustl.edu	37	1	109806249	109806249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001408.2	+1	reviewed	p.Q1617H	1.000	90	0%	93	23.7%	20	50%	benign(0.008)	tolerated(0.48)	neutral(0.011)	superfamily_ConA_like_lec_gl
CELSR2	1952	genome.wustl.edu	37	1	109806291	109806291	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001408.2	+1	reviewed	p.S1631	0.003	70	0%	86	31.4%	21	42.8%	-	-	-	superfamily_ConA_like_lec_gl
CELSR2	1952	genome.wustl.edu	37	1	109808758	109808758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001408.2	+1	reviewed	p.E1981D	1.000	95	0%	108	27.8%	19	31.5%	benign(0.096)	tolerated(0.49)	neutral(0.018)	HMMPfam_HRM,HMMSmart_HormR
CELSR2	1952	genome.wustl.edu	37	1	109812437	109812437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001408.2	+1	reviewed	p.R2368W	1.000	134	2.2%	108	22.2%	29	44.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_GPS
SORT1	6272	genome.wustl.edu	37	1	109857002	109857002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002959.4	-1	reviewed	p.L788M	1.000	88	0%	68	10.3%	54	20.3%	possibly_damaging(0.526)	deleterious(0.05)	deleterious(0.523)	NULL
SORT1	6272	genome.wustl.edu	37	1	109884663	109884663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002959.4	-1	reviewed	p.V361L	1.000	192	0%	74	17.6%	28	35.7%	benign(0.037)	tolerated(0.09)	neutral(0.298)	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
PSMA5	5686	genome.wustl.edu	37	1	109957948	109957948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002790.2	-1	reviewed	p.G45D	1.000	409	0%	196	24%	441	42.1%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
SYPL2	284612	genome.wustl.edu	37	1	110019476	110019476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040709.1	+1	validated	p.F111L	1.000	377	0.3%	310	19%	1	0%	probably_damaging(0.987)	deleterious(0.04)	deleterious(0.785)	HMMPfam_MARVEL
GPR61	83873	genome.wustl.edu	37	1	110086145	110086145	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031936.4	+1	validated	p.W167*	1.000	152	0%	149	23.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
AMPD2	271	genome.wustl.edu	37	1	110168331	110168331	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004037.6	+1	validated	p.P144	0.058	65	0%	102	20.6%	4	0%	-	-	-	NULL
AMPD2	271	genome.wustl.edu	37	1	110171273	110171273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004037.6	+1	validated	p.M526I	1.000	53	0%	66	19.7%	33	15.1%	benign(0.02)	tolerated(0.51)	neutral(0.010)	HMMPfam_A_deaminase,superfamily_Metallo-dependent hydrolases
GSTM3	2947	genome.wustl.edu	37	1	110279596	110279596	+	RNA	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_024537.1	-1	reviewed	NULL	0.698	84	0%	96	31.2%	2	100%	-	-	-	-
GSTM3	2947	genome.wustl.edu	37	1	110280989	110280989	+	Splice_Site	SNP	C	C	A	rs78442107	byCluster	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000849.4	-1	reviewed	e4-1	1.000	318	0.3%	327	22%	0	-	-	-	-	-
EPS8L3	79574	genome.wustl.edu	37	1	110299671	110299671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139053.1	-1	reviewed	p.W363C	0.985	222	0%	169	24.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EPS8L3	79574	genome.wustl.edu	37	1	110300103	110300103	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139053.1	-1	reviewed	p.F324	0.000	158	0%	144	20.1%	3	66.6%	-	-	-	NULL
ALX3	257	genome.wustl.edu	37	1	110603600	110603600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006492.2	-1	reviewed	p.P263T	1.000	41	0%	30	16.7%	3	0%	possibly_damaging(0.84)	tolerated(0.09)	deleterious(0.618)	NULL
UBL4B	164153	genome.wustl.edu	37	1	110655439	110655439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203412.1	+1	validated	p.G95R	0.069	35	0%	34	26.5%	0	-	benign(0.006)	tolerated(0.25)	neutral(0.037)	NULL
SLC6A17	388662	genome.wustl.edu	37	1	110717490	110717490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010898.2	+1	validated	p.G221W	1.000	155	0%	114	18.4%	0	-	benign(0.274)	deleterious(0)	deleterious(0.474)	HMMPfam_SNF
SLC6A17	388662	genome.wustl.edu	37	1	110734702	110734702	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010898.2	+1	validated	p.Q325*	1.000	379	0%	289	21.1%	0	-	-	-	-	HMMPfam_SNF
KCNC4	3749	genome.wustl.edu	37	1	110766057	110766057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004978.3	+1	reviewed	p.L384F	1.000	51	0%	55	23.6%	17	41.1%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
DENND2D	79961	genome.wustl.edu	37	1	111742280	111742280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024901.3	-1	provisional	p.D70N	0.001	76	0%	112	18.8%	20	35%	benign(0.004)	tolerated(0.5)	neutral(0.010)	HMMPfam_uDENN,HMMSmart_SM00800
OVGP1	5016	genome.wustl.edu	37	1	111968073	111968073	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000369728	-1	known	p.L147	0.000	395	0%	135	17.8%	0	-	-	-	-	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
ATP5F1	515	genome.wustl.edu	37	1	111996905	111996905	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001688.4	+1	reviewed	p.Y50	1.000	268	0%	210	25.2%	193	32.6%	-	-	-	NULL
ST7L	54879	genome.wustl.edu	37	1	113093301	113093301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017744.4	-1	reviewed	p.P471T	1.000	202	0.5%	75	17.3%	10	30%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_ST7
ST7L	54879	genome.wustl.edu	37	1	113159499	113159499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017744.4	-1	reviewed	p.S75L	1.000	294	0%	309	21.7%	8	62.5%	benign(0.398)	deleterious(0)	deleterious(0.573)	HMMPfam_ST7
RHOC	389	genome.wustl.edu	37	1	113245695	113245695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042678.1	-1	reviewed	p.R68Q	1.000	68	0%	131	19.1%	515	35.5%	possibly_damaging(0.798)	deleterious(0)	deleterious(0.745)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPM1J	333926	genome.wustl.edu	37	1	113253144	113253144	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005167.5	-1	reviewed	p.D436	0.207	183	0%	238	26.5%	3	66.6%	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
PPM1J	333926	genome.wustl.edu	37	1	113254995	113254995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005167.5	-1	reviewed	p.V272M	0.998	82	0%	130	15.4%	2	50%	benign(0)	tolerated(0.33)	neutral(0.024)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
LRIG2	9860	genome.wustl.edu	37	1	113638976	113638976	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014813.1	+1	provisional	p.N360	1.000	626	0%	268	12.3%	0	-	-	-	-	superfamily_SSF52047
MAGI3	260425	genome.wustl.edu	37	1	114225949	114225949	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142782.1	+1	validated	p.D1253	0.001	113	0%	100	20%	3	0%	-	-	-	NULL
AP4B1	10717	genome.wustl.edu	37	1	114438979	114438979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006594.2	-1	validated	p.A471T	1.000	229	0%	111	12.6%	20	75%	benign(0.001)	tolerated(0.2)	neutral(0.049)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
LOC100287722	100287722	genome.wustl.edu	37	1	114445385	114445385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342103.1	+1	model	p.V60I	1.000	234	0%	212	20.3%	11	36.3%	-	-	-	NULL
DCLRE1B	64858	genome.wustl.edu	37	1	114453757	114453757	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022836.3	+1	validated	p.L181	0.904	133	0%	118	23.7%	14	57.1%	-	-	-	NULL
HIPK1	204851	genome.wustl.edu	37	1	114500802	114500802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198268.1	+1	reviewed	p.V624I	1.000	331	0%	205	23.4%	7	14.2%	benign(0.016)	tolerated(0.78)	neutral(0.002)	NULL
HIPK1	204851	genome.wustl.edu	37	1	114515725	114515725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198268.1	+1	reviewed	p.A1075V	1.000	57	0%	48	20.8%	8	37.5%	probably_damaging(0.985)	tolerated(0.77)	neutral(0.433)	NULL
OLFML3	56944	genome.wustl.edu	37	1	114524089	114524089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020190.2	+1	validated	p.D307Y	1.000	64	0%	37	21.6%	88	23.8%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_OLF,HMMSmart_SM00284
SYT6	148281	genome.wustl.edu	37	1	114680281	114680281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_205848.2	-1	validated	p.P218S	1.000	373	0%	211	12.3%	0	-	possibly_damaging(0.447)	tolerated(0.06)	deleterious(0.469)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
AMPD1	270	genome.wustl.edu	37	1	115217475	115217475	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000036.2	-1	reviewed	p.T566	0.003	169	0%	206	22.8%	0	-	-	-	-	HMMPfam_A_deaminase,superfamily_SSF51556
AMPD1	270	genome.wustl.edu	37	1	115220071	115220071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000036.2	-1	reviewed	p.G430V	1.000	156	0%	120	24.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_A_deaminase,superfamily_SSF51556
AMPD1	270	genome.wustl.edu	37	1	115222220	115222220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000036.2	-1	reviewed	p.D293Y	1.000	336	0%	266	22.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF51556
SYCP1	6847	genome.wustl.edu	37	1	115430246	115430246	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003176.2	+1	validated	e14-1	1.000	150	0%	127	11.8%	0	-	-	-	-	-
TSPAN2	10100	genome.wustl.edu	37	1	115596079	115596079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005725.4	-1	reviewed	p.C174Y	1.000	267	0%	87	18.4%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
NGF	4803	genome.wustl.edu	37	1	115828832	115828832	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002506.2	-1	reviewed	p.K195	1.000	172	0%	199	20.6%	1	100%	-	-	-	HMMPfam_NGF,HMMSmart_NGF,PatternScan_NGF_1,superfamily_SSF57501
VANGL1	81839	genome.wustl.edu	37	1	116206802	116206802	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138959.2	+1	reviewed	p.E242A	1.000	184	0%	74	32.4%	6	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Strabismus
SLC22A15	55356	genome.wustl.edu	37	1	116577889	116577889	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018420.2	+1	validated	p.L342	0.990	472	0%	163	19%	0	-	-	-	-	superfamily_MFS general substrate transporter
ATP1A1	476	genome.wustl.edu	37	1	116941305	116941305	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000701.7	+1	reviewed	p.D729	1.000	699	0.1%	198	11.1%	314	21.6%	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
ATP1A1	476	genome.wustl.edu	37	1	116944250	116944250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000701.7	+1	reviewed	p.G975D	0.998	540	0%	232	21.1%	651	41.1%	benign(0)	tolerated(1)	-	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
IGSF3	3321	genome.wustl.edu	37	1	117127365	117127365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001542.2	-1	validated	p.S937N	1.000	51	0%	46	26.1%	5	80%	possibly_damaging(0.538)	tolerated(0.38)	neutral(0.200)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
IGSF3	3321	genome.wustl.edu	37	1	117158752	117158752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001542.2	-1	validated	p.S124I	1.000	268	0%	146	20.5%	2	50%	benign(0.13)	deleterious(0)	neutral(0.456)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
TTF2	8458	genome.wustl.edu	37	1	117635410	117635410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003594.3	+1	reviewed	p.L955I	1.000	272	0%	211	26.1%	25	28%	possibly_damaging(0.892)	deleterious(0.02)	deleterious(0.734)	NULL
TRIM45	80263	genome.wustl.edu	37	1	117659263	117659263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025188.3	-1	reviewed	p.V443I	0.047	186	0%	184	32.1%	13	23%	benign(0)	tolerated(1)	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
TRIM45	80263	genome.wustl.edu	37	1	117659366	117659366	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025188.3	-1	reviewed	p.D408	0.980	156	0%	172	22.7%	6	33.3%	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
SPAG17	200162	genome.wustl.edu	37	1	118629542	118629542	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206996.2	-1	validated	p.H483	1.000	210	0%	225	20%	0	-	-	-	-	NULL
PHGDH	26227	genome.wustl.edu	37	1	120286594	120286594	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006623.3	+1	reviewed	p.I511	1.000	81	0%	46	15.2%	246	33.7%	-	-	-	NULL
REG4	83998	genome.wustl.edu	37	1	120342396	120342396	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032044.3	-1	validated	p.G85	0.984	198	0%	89	23.6%	0	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
REG4	83998	genome.wustl.edu	37	1	120351373	120351373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032044.3	-1	validated	p.R7Q	0.003	65	0%	73	19.2%	0	-	unknown(0)	tolerated(0.33)	-	NULL
NBPF7	343505	genome.wustl.edu	37	1	120385125	120385125	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001047980.1	-1	predicted	p.M90R	0.006	399	0%	207	19.8%	0	-	-	-	-	NULL
NOTCH2	4853	genome.wustl.edu	37	1	120464938	120464938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024408.2	-1	reviewed	p.P1712S	1.000	209	0%	136	16.9%	9	44.4%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
FCGR1B	2210	genome.wustl.edu	37	1	120930078	120930078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017986.2	-1	validated	p.R175C	0.003	686	0%	556	18.7%	25	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
NBPF9	400818	genome.wustl.edu	37	1	144818011	144818011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037675.2	+1	predicted	p.L296F	0.004	2056	0%	724	5.4%	1	0%	possibly_damaging(0.911)	deleterious(0.03)	deleterious(0.728)	NULL
NBPF9	400818	genome.wustl.edu	37	1	144828649	144828649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037675.2	+1	predicted	p.S650I	0.001	1135	0%	372	8.1%	10	10%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144867957	144867957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014644.4	-1	validated	p.G1828C	0.839	570	0%	151	11.3%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144882449	144882449	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014644.4	-1	validated	p.H1190	0.047	245	0%	85	15.3%	0	-	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144906474	144906474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014644.4	-1	validated	p.A795T	1.000	144	0%	44	27.3%	21	9.5%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144917820	144917820	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014644.4	-1	validated	p.E489A	1.000	618	0%	443	11.3%	8	12.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144918848	144918848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014644.4	-1	validated	p.K446N	1.000	885	0%	802	14.3%	6	50%	possibly_damaging(0.88)	deleterious(0)	deleterious(0.788)	NULL
TXNIP	10628	genome.wustl.edu	37	1	145440962	145440962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006472.3	+1	validated	p.P350H	1.000	489	0%	278	20.5%	101	5.9%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
ITGA10	8515	genome.wustl.edu	37	1	145532599	145532599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003637.3	+1	reviewed	p.G351V	1.000	383	0.3%	229	21.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain
ANKRD35	148741	genome.wustl.edu	37	1	145562258	145562258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144698.3	+1	validated	p.S649N	1.000	26	0%	26	23.1%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
PIAS3	10401	genome.wustl.edu	37	1	145585428	145585428	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006099.3	+1	reviewed	p.T565S	1.000	74	0%	88	23.9%	36	50%	benign(0.001)	tolerated(0.75)	neutral(0.002)	NULL
POLR3C	10623	genome.wustl.edu	37	1	145606308	145606308	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006468.6	-1	provisional	p.A215	1.000	561	0%	399	20.1%	29	44.8%	-	-	-	HMMPfam_RNA_pol_Rpc82
CHD1L	9557	genome.wustl.edu	37	1	146766137	146766137	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004284.3	+1	validated	p.N851	1.000	558	0%	168	22%	54	40.7%	-	-	-	NULL
BCL9	607	genome.wustl.edu	37	1	147083652	147083652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004326.2	+1	reviewed	p.P6H	1.000	191	0%	141	10.6%	13	30.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BCL9	607	genome.wustl.edu	37	1	147091959	147091959	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004326.2	+1	reviewed	p.Q666	1.000	75	0%	73	21.9%	14	50%	-	-	-	NULL
BCL9	607	genome.wustl.edu	37	1	147092380	147092380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004326.2	+1	reviewed	p.D807N	1.000	40	0%	37	16.2%	17	52.9%	probably_damaging(0.979)	tolerated(0.57)	neutral(0.428)	NULL
BCL9	607	genome.wustl.edu	37	1	147096498	147096498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004326.2	+1	reviewed	p.T1340I	0.791	75	0%	57	21.1%	41	41.4%	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
GJA5	2702	genome.wustl.edu	37	1	147230791	147230791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005266.5	-1	reviewed	p.R186C	1.000	110	0%	43	14%	5	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC
GJA5	2702	genome.wustl.edu	37	1	147231051	147231051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005266.5	-1	reviewed	p.T99N	0.009	154	0%	59	25.4%	0	-	possibly_damaging(0.78)	tolerated(0.29)	neutral(0.321)	HMMPfam_Connexin
HIST2H3PS2	440686	genome.wustl.edu	37	1	149400456	149400456	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000369176	-1	known	p.S29	1.000	58	0%	51	15.7%	0	-	-	-	-	superfamily_Histone-fold
FAM72C	554282	genome.wustl.edu	37	1	149459477	149459477	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000369175	-1	known	p.L25	1.000	1273	0%	819	12.3%	4	25%	-	-	-	NULL
FCGR1A	2209	genome.wustl.edu	37	1	149761785	149761785	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000566.3	+1	reviewed	p.Y245	0.869	257	0%	297	20.5%	52	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
MTMR11	10903	genome.wustl.edu	37	1	149908481	149908481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000439741	-1	known	p.E20D	0.994	545	0%	279	18.3%	3	66.6%	benign(0.002)	tolerated(0.23)	neutral(0.042)	NULL
VPS45	11311	genome.wustl.edu	37	1	150054072	150054072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007259.3	+1	reviewed	p.D310G	1.000	299	0%	103	19.4%	24	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
PLEKHO1	51177	genome.wustl.edu	37	1	150131650	150131650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016274.4	+1	provisional	p.L388M	1.000	54	0%	47	25.5%	181	10.4%	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	NULL
C1orf54	79630	genome.wustl.edu	37	1	150248164	150248164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024579.3	+1	validated	p.D49N	0.888	449	0%	368	22.6%	58	1.7%	unknown(0)	tolerated(1)	-	NULL
C1orf51	148523	genome.wustl.edu	37	1	150259341	150259341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144697.2	+1	predicted	p.A378D	0.003	106	0%	110	12.7%	1	0%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
PRPF3	9129	genome.wustl.edu	37	1	150310712	150310712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004698.2	+1	reviewed	p.A371V	1.000	238	0%	110	13.6%	27	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PRP3
RPRD2	23248	genome.wustl.edu	37	1	150443991	150443991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015203.3	+1	validated	p.S856F	1.000	74	0%	64	21.9%	19	47.3%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
RPRD2	23248	genome.wustl.edu	37	1	150444576	150444576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015203.3	+1	validated	p.A1051D	0.001	97	1%	64	23.4%	27	59.2%	benign(0.075)	deleterious(0)	neutral(0.450)	NULL
RPRD2	23248	genome.wustl.edu	37	1	150444739	150444739	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015203.3	+1	validated	p.T1105	0.831	86	3.5%	79	13.9%	31	16.1%	-	-	-	NULL
ECM1	1893	genome.wustl.edu	37	1	150483380	150483380	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004425.3	+1	reviewed	p.S138	0.000	17	0%	29	20.7%	29	0%	-	-	-	HMMPfam_ECM1
ADAMTSL4	54507	genome.wustl.edu	37	1	150529682	150529682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019032.4	+1	reviewed	p.G640C	0.996	27	0%	23	21.7%	2	0%	benign(0.382)	tolerated(0.2)	neutral(0.171)	NULL
ADAMTSL4	54507	genome.wustl.edu	37	1	150529979	150529979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019032.4	+1	reviewed	p.R686H	0.998	15	0%	22	22.7%	0	-	benign(0.006)	tolerated(0.57)	neutral(0.006)	superfamily_TSP-1 type 1 repeat
LOC100289061	100289061	genome.wustl.edu	37	1	150531435	150531435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342133.1	-1	model	p.A98T	1.000	12	0%	27	18.5%	0	-	-	-	-	NULL
ARNT	405	genome.wustl.edu	37	1	150807021	150807021	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001668.2	-1	reviewed	p.R266*	1.000	353	0%	157	17.2%	7	0%	-	-	-	HMMPfam_PAS
SETDB1	9869	genome.wustl.edu	37	1	150933439	150933439	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145415.1	+1	reviewed	p.G967	0.997	337	0%	172	27.3%	24	45.8%	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
SETDB1	9869	genome.wustl.edu	37	1	150935118	150935118	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145415.1	+1	reviewed	p.G1072*	1.000	181	0%	129	23.3%	21	4.7%	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
ANXA9	8416	genome.wustl.edu	37	1	150956777	150956777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003568.2	+1	validated	p.Q96H	1.000	94	0%	112	13.4%	2	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_ANX
PRUNE	58497	genome.wustl.edu	37	1	151006281	151006281	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021222.1	+1	provisional	e8-1	1.000	198	0%	127	18.1%	1	100%	-	-	-	-
TNFAIP8L2	79626	genome.wustl.edu	37	1	151131285	151131285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024575.3	+1	validated	p.V38M	1.000	104	0%	61	29.5%	15	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_DUF758
TNFAIP8L2	79626	genome.wustl.edu	37	1	151131506	151131506	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024575.3	+1	validated	p.F111	0.082	102	0%	72	16.7%	14	0%	-	-	-	HMMPfam_DUF758
LYSMD1	388695	genome.wustl.edu	37	1	151134369	151134369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_212551.4	-1	validated	p.A130T	0.000	568	0%	352	19%	11	18.1%	benign(0.006)	tolerated(0.3)	neutral(0.029)	NULL
LYSMD1	388695	genome.wustl.edu	37	1	151137686	151137686	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_212551.4	-1	validated	p.Q17*	0.119	98	0%	50	16%	4	50%	-	-	-	NULL
PIP5K1A	8394	genome.wustl.edu	37	1	151204815	151204815	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135638.1	+1	validated	p.F154V	1.000	574	0%	234	18.8%	18	38.8%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00330,superfamily_SAICAR synthase-like
PSMD4	5710	genome.wustl.edu	37	1	151234659	151234659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002810.2	+1	reviewed	p.R17W	1.000	243	0%	169	16%	222	36.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00327,superfamily_vWA-like
PSMD4	5710	genome.wustl.edu	37	1	151238020	151238020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002810.2	+1	reviewed	p.L197M	1.000	169	0%	92	25%	234	21.3%	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
ZNF687	57592	genome.wustl.edu	37	1	151259493	151259493	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020832.1	+1	provisional	p.S242	0.011	69	0%	70	15.7%	6	33.3%	-	-	-	NULL
ZNF687	57592	genome.wustl.edu	37	1	151260514	151260514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020832.1	+1	provisional	p.R583C	0.992	24	0%	40	32.5%	20	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00355
ZNF687	57592	genome.wustl.edu	37	1	151261869	151261869	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000426871	+1	known	p.A432V	0.998	203	0%	156	25%	29	31%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF687	57592	genome.wustl.edu	37	1	151263367	151263367	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020832.1	+1	provisional	p.D1132	0.072	86	0%	81	19.8%	14	50%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
PI4KB	5298	genome.wustl.edu	37	1	151288077	151288077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002651.1	-1	provisional	p.S306I	1.000	690	0%	443	24.6%	27	37%	benign(0.249)	deleterious(0.04)	neutral(0.374)	NULL
RFX5	5993	genome.wustl.edu	37	1	151317006	151317006	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000449.3	-1	reviewed	p.Y120*	1.000	142	0%	81	17.3%	14	28.5%	-	-	-	HMMPfam_RFX_DNA_binding,superfamily_SSF46785
RFX5	5993	genome.wustl.edu	37	1	151318403	151318403	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000449.3	-1	reviewed	e2+1	1.000	741	0%	447	22.6%	0	-	-	-	-	-
POGZ	23126	genome.wustl.edu	37	1	151377326	151377326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015100.2	-1	reviewed	p.E1395D	1.000	444	0%	258	19%	21	19%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
POGZ	23126	genome.wustl.edu	37	1	151380717	151380717	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015100.2	-1	reviewed	e14-1	1.000	209	0.5%	130	20.8%	1	100%	-	-	-	-
CGN	57530	genome.wustl.edu	37	1	151491204	151491204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020770.2	+1	validated	p.S70I	1.000	208	0%	164	15.9%	11	45.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CGN	57530	genome.wustl.edu	37	1	151496752	151496752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020770.2	+1	validated	p.G440V	0.073	260	0%	229	16.2%	6	0%	probably_damaging(0.972)	tolerated(0.1)	deleterious(0.700)	NULL
THEM4	117145	genome.wustl.edu	37	1	151861795	151861795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053055.3	-1	reviewed	p.S114I	0.989	458	0%	165	14.5%	19	36.8%	probably_damaging(0.982)	tolerated(0.13)	deleterious(0.679)	superfamily_SSF54637
THEM4	117145	genome.wustl.edu	37	1	151861809	151861809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053055.3	-1	reviewed	p.Q109H	0.000	457	0%	162	27.8%	17	47%	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	NULL
TCHHL1	126637	genome.wustl.edu	37	1	152058455	152058455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008536.1	-1	provisional	p.P568L	0.000	224	0%	207	19.3%	0	-	possibly_damaging(0.796)	tolerated(0.69)	neutral(0.301)	NULL
TCHH	7062	genome.wustl.edu	37	1	152080821	152080821	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007113.2	-1	provisional	p.D1624	0.000	363	0%	300	25.7%	1	0%	-	-	-	NULL
HRNR	388697	genome.wustl.edu	37	1	152192979	152192979	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009931.1	-1	validated	p.Q376*	0.000	258	0%	171	26.3%	0	-	-	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152275228	152275228	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002016.1	-1	reviewed	p.I4045K	0.000	413	0%	161	19.3%	0	-	possibly_damaging(0.847)	deleterious(0)	deleterious(0.770)	NULL
FLG	2312	genome.wustl.edu	37	1	152281807	152281807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002016.1	-1	reviewed	p.S1852F	0.002	652	0%	350	20%	0	-	unknown(0)	deleterious(0.02)	-	NULL
FLG	2312	genome.wustl.edu	37	1	152284876	152284876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002016.1	-1	reviewed	p.S829F	0.001	743	0%	354	21.2%	0	-	unknown(0)	deleterious(0.01)	-	NULL
FLG	2312	genome.wustl.edu	37	1	152285578	152285578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002016.1	-1	reviewed	p.A595V	0.000	813	0.1%	405	15.6%	0	-	probably_damaging(0.997)	tolerated(0.42)	deleterious(0.480)	HMMPfam_Filaggrin
FLG2	388698	genome.wustl.edu	37	1	152323643	152323643	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014342.2	-1	provisional	p.R2207*	0.000	1126	0%	319	21%	0	-	-	-	-	NULL
LCE2A	353139	genome.wustl.edu	37	1	152671499	152671499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178428.3	+1	validated	p.S41Y	0.571	220	0%	231	13.9%	0	-	unknown(0)	-	-	NULL
SPRR2A	6700	genome.wustl.edu	37	1	153028996	153028996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005988.2	-1	validated	p.K72N	0.973	830	0%	569	23.6%	0	-	unknown(0)	-	-	NULL
INTS3	65123	genome.wustl.edu	37	1	153723638	153723638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023015.3	+1	validated	p.D218Y	1.000	246	0%	147	12.9%	28	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
INTS3	65123	genome.wustl.edu	37	1	153736659	153736659	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023015.3	+1	validated	p.H629	1.000	272	0%	172	11.6%	48	14.5%	-	-	-	NULL
SLC27A3	11000	genome.wustl.edu	37	1	153750798	153750798	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000458027	+1	known	p.G193E	0.003	128	0%	171	18.7%	29	31%	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
SLC27A3	11000	genome.wustl.edu	37	1	153752315	153752315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024330.1	+1	provisional	p.T677I	1.000	87	0%	124	12.9%	56	23.2%	benign(0.002)	tolerated(0.65)	neutral(0.003)	superfamily_Acetyl-CoA synthetase-like
GATAD2B	57459	genome.wustl.edu	37	1	153784575	153784575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020699.2	-1	validated	p.L485I	0.966	182	0%	118	15.3%	7	42.8%	possibly_damaging(0.892)	tolerated(0.21)	neutral(0.395)	NULL
DENND4B	9909	genome.wustl.edu	37	1	153913893	153913893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014856.2	-1	validated	p.N360S	1.000	484	0%	455	21.5%	9	11.1%	benign(0.073)	tolerated(0.4)	neutral(0.021)	HMMPfam_DENN,HMMSmart_DENN
DENND4B	9909	genome.wustl.edu	37	1	153914519	153914519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014856.2	-1	validated	p.A294V	0.072	40	0%	21	33.3%	4	25%	benign(0.221)	tolerated(0.37)	neutral(0.041)	NULL
CRTC2	200186	genome.wustl.edu	37	1	153924679	153924679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181715.1	-1	provisional	p.T271M	1.000	270	0%	262	18.7%	51	37.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC39A1	27173	genome.wustl.edu	37	1	153934770	153934770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014437.3	-1	provisional	p.A82T	1.000	116	0%	118	21.2%	161	42.8%	possibly_damaging(0.932)	deleterious(0.01)	deleterious(0.784)	HMMPfam_Zip
NUP210L	91181	genome.wustl.edu	37	1	154034125	154034125	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207308.2	-1	validated	p.Q860	0.959	211	0%	125	23.2%	0	-	-	-	-	NULL
NUP210L	91181	genome.wustl.edu	37	1	154099870	154099870	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207308.2	-1	validated	p.R368*	0.695	301	0%	269	18.2%	0	-	-	-	-	NULL
C1orf43	25912	genome.wustl.edu	37	1	154192334	154192334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098616.1	-1	validated	p.P49H	1.000	206	0%	305	22%	97	48.4%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_NICE-3
UBAP2L	9898	genome.wustl.edu	37	1	154242839	154242839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000310038	+1	known	p.A368S	1.000	31	0%	28	32.1%	74	32.4%	unknown(0)	-	-	NULL
ATP8B2	57198	genome.wustl.edu	37	1	154316032	154316032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020452.3	+1	reviewed	p.M615I	0.004	132	0%	111	16.2%	10	40%	benign(0.001)	tolerated(0.18)	neutral(0.056)	superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP8B2	57198	genome.wustl.edu	37	1	154318928	154318928	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020452.3	+1	reviewed	p.S1033	0.984	135	0%	134	23.1%	29	20.6%	-	-	-	superfamily_SSF81665
IL6R	3570	genome.wustl.edu	37	1	154407574	154407574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000565.2	+1	reviewed	p.R250I	0.418	133	0%	166	18.1%	7	42.8%	possibly_damaging(0.716)	tolerated(0.49)	neutral(0.270)	PatternScan_HEMATOPO_REC_L_F3,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SHE	126669	genome.wustl.edu	37	1	154474006	154474006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010846.2	-1	validated	p.S166I	0.346	252	0%	381	17.8%	1	0%	benign(0.163)	tolerated(0.1)	neutral(0.301)	NULL
TDRD10	126668	genome.wustl.edu	37	1	154480958	154480958	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098475.1	+1	validated	e3+1	0.972	822	0%	751	23.7%	0	-	-	-	-	-
UBE2Q1	55585	genome.wustl.edu	37	1	154524926	154524926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017582.6	-1	reviewed	p.E277K	1.000	398	0%	357	22.1%	107	38.3%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
ADAR	103	genome.wustl.edu	37	1	154557302	154557302	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001111.3	-1	reviewed	p.F1221I	1.000	283	0%	203	24.1%	88	38.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00552
ADAR	103	genome.wustl.edu	37	1	154574123	154574123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001111.3	-1	reviewed	p.A332D	0.004	337	0%	260	23.5%	27	18.5%	benign(0.315)	deleterious(0.01)	deleterious(0.504)	"HMMPfam_z-alpha,HMMSmart_SM00550,superfamily_""Winged helix"" DNA-binding domain"
KCNN3	3782	genome.wustl.edu	37	1	154698412	154698412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002249.4	-1	reviewed	p.D561N	1.000	207	0%	117	35.9%	14	0%	possibly_damaging(0.869)	deleterious(0)	deleterious(0.782)	HMMPfam_CaMBD,superfamily_Small-conductance potassium channel,superfamily_Voltage-gated potassium channels
PMVK	10654	genome.wustl.edu	37	1	154901546	154901546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006556.3	-1	validated	p.G89D	1.000	180	0%	99	24.2%	120	23.3%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	HMMPfam_P-mevalo_kinase,superfamily_P-loop containing nucleoside triphosphate hydrolases
CKS1B	1163	genome.wustl.edu	37	1	154951243	154951243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001826.2	+1	reviewed	p.P77L	1.000	381	0%	251	19.9%	347	47.2%	unknown(0)	deleterious(0.01)	-	NULL
DCST2	127579	genome.wustl.edu	37	1	155003663	155003663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144622.2	-1	validated	p.R263C	0.881	94	0%	61	9.8%	3	33.3%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	NULL
ADAM15	8751	genome.wustl.edu	37	1	155030752	155030752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207197.1	+1	reviewed	p.Q584H	0.989	38	0%	74	25.7%	126	32.5%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_ADAM_CR,HMMSmart_SM00608
ADAM15	8751	genome.wustl.edu	37	1	155034729	155034729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207191.1	+1	reviewed	p.G739D	0.995	13	0%	15	26.7%	193	30.5%	probably_damaging(0.989)	tolerated(0.42)	neutral(0.454)	NULL
ADAM15	8751	genome.wustl.edu	37	1	155034808	155034808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207197.1	+1	reviewed	p.P838T	0.017	25	0%	22	36.4%	242	37.1%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
TRIM46	80128	genome.wustl.edu	37	1	155151011	155151011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025058.3	+1	validated	p.A403T	1.000	124	0%	144	22.9%	1	100%	probably_damaging(0.997)	tolerated(0.35)	deleterious(0.487)	NULL
MUC1	4582	genome.wustl.edu	37	1	155161969	155161969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000425082	-1	known	p.S55N	0.000	181	0%	317	12.6%	676	19.2%	benign(0.021)	tolerated(0.42)	neutral(0.015)	NULL
GBAP1	2630	genome.wustl.edu	37	1	155184886	155184886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000440295	-1	known	p.V313I	0.556	209	0%	200	20%	6	33.3%	-	-	-	NULL
FAM189B	10712	genome.wustl.edu	37	1	155218219	155218219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006589.2	-1	validated	p.A519V	1.000	403	0%	378	15.3%	52	40.3%	possibly_damaging(0.842)	deleterious(0)	deleterious(0.766)	NULL
SCAMP3	10067	genome.wustl.edu	37	1	155231472	155231472	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005698.2	-1	reviewed	p.V40	1.000	156	0%	153	20.9%	50	8%	-	-	-	NULL
CLK2	1196	genome.wustl.edu	37	1	155237841	155237841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003993.2	-1	reviewed	p.V210M	0.998	655	0%	633	25%	47	31.9%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CLK2	1196	genome.wustl.edu	37	1	155238112	155238112	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003993.2	-1	reviewed	p.R175*	1.000	229	0%	265	16.2%	19	15.7%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
CLK2	1196	genome.wustl.edu	37	1	155240714	155240714	+	Missense_Mutation	SNP	G	G	A	rs12749700	byCluster;byFrequency;by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003993.2	-1	reviewed	p.R19C	1.000	88	0%	129	12.4%	18	22.2%	unknown(0)	tolerated(0.24)	-	NULL
RUSC1	23623	genome.wustl.edu	37	1	155291627	155291627	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105203.1	+1	validated	p.S21	0.961	169	0%	155	20.6%	1	0%	-	-	-	NULL
RUSC1	23623	genome.wustl.edu	37	1	155296779	155296779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105203.1	+1	validated	p.R757H	0.000	34	0%	31	16.1%	48	47.9%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	NULL
ASH1L	55870	genome.wustl.edu	37	1	155313253	155313253	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018489.2	-1	reviewed	p.H2715	0.998	591	0%	189	21.2%	8	50%	-	-	-	HMMPfam_BAH,HMMSmart_SM00439
ASH1L	55870	genome.wustl.edu	37	1	155448699	155448699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018489.2	-1	reviewed	p.R1321Q	1.000	353	0%	115	26.1%	2	100%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
MSTO1	55154	genome.wustl.edu	37	1	155582738	155582738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018116.2	+1	validated	p.A357V	1.000	816	0%	679	21.9%	27	37%	probably_damaging(0.978)	tolerated(0.37)	neutral(0.440)	NULL
DAP3	7818	genome.wustl.edu	37	1	155686868	155686868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004632.2	+1	reviewed	p.Q39H	0.997	170	0%	116	12.9%	88	29.5%	probably_damaging(0.964)	tolerated(0.08)	deleterious(0.706)	NULL
SYT11	23208	genome.wustl.edu	37	1	155837770	155837770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152280.4	+1	reviewed	p.V17M	1.000	274	0%	124	22.6%	1	0%	possibly_damaging(0.644)	tolerated(0.13)	deleterious(0.478)	NULL
SYT11	23208	genome.wustl.edu	37	1	155851194	155851194	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152280.4	+1	reviewed	p.I397	1.000	126	0%	68	20.6%	5	0%	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
ARHGEF2	9181	genome.wustl.edu	37	1	155920098	155920098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004723.3	-1	validated	p.S932N	1.000	47	0%	66	12.1%	28	7.1%	possibly_damaging(0.662)	deleterious(0)	deleterious(0.678)	NULL
LMNA	4000	genome.wustl.edu	37	1	156105746	156105746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170707.2	+1	reviewed	p.R331W	1.000	53	0%	32	28.1%	358	44.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
SEMA4A	64218	genome.wustl.edu	37	1	156124433	156124433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022367.2	+1	provisional	p.L22I	0.003	80	0%	73	23.3%	0	-	benign(0.055)	tolerated(0.21)	neutral(0.048)	NULL
SEMA4A	64218	genome.wustl.edu	37	1	156144612	156144612	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022367.2	+1	provisional	e11-1	0.970	104	0%	94	20.2%	0	-	-	-	-	-
PMF1	11243	genome.wustl.edu	37	1	156203455	156203455	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007221.2	+1	validated	p.E102*	0.995	380	0%	297	25.3%	82	2.4%	-	-	-	HMMPfam_Nnf1
TMEM79	84283	genome.wustl.edu	37	1	156255562	156255562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032323.2	+1	validated	p.P182H	0.011	30	0%	32	25%	8	12.5%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	NULL
C1orf85	112770	genome.wustl.edu	37	1	156263328	156263328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144580.1	-1	provisional	p.A280T	0.146	262	0%	186	26.9%	52	25%	benign(0.006)	tolerated(0.43)	neutral(0.013)	NULL
VHLL	391104	genome.wustl.edu	37	1	156268619	156268619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004319.2	-1	reviewed	p.S121Y	0.077	330	0%	247	23.5%	0	-	-	-	-	HMMPfam_VHL,superfamily_SSF49468
CCT3	7203	genome.wustl.edu	37	1	156281948	156281948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005998.3	-1	reviewed	p.A347T	1.000	330	0%	268	26.5%	356	37.3%	benign(0.003)	deleterious(0.01)	neutral(0.406)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF52029,superfamily_SSF54849
MEF2D	4209	genome.wustl.edu	37	1	156446853	156446853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005920.2	-1	provisional	p.D269G	1.000	271	0%	236	25.4%	11	9%	possibly_damaging(0.864)	tolerated(0.07)	deleterious(0.653)	NULL
IQGAP3	128239	genome.wustl.edu	37	1	156507040	156507040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178229.4	-1	validated	p.L1119I	1.000	349	0%	185	18.9%	11	45.4%	benign(0.002)	tolerated(1)	-	HMMPfam_RasGAP,HMMSmart_RasGAP,superfamily_Rho_GAP
IQGAP3	128239	genome.wustl.edu	37	1	156521765	156521765	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178229.4	-1	validated	e14+1	1.000	199	0%	128	17.2%	0	-	-	-	-	-
IQGAP3	128239	genome.wustl.edu	37	1	156539179	156539179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178229.4	-1	validated	p.E38D	1.000	53	0%	52	19.2%	2	0%	possibly_damaging(0.749)	deleterious(0)	deleterious(0.720)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
TTC24	164118	genome.wustl.edu	37	1	156552060	156552060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000368237	+1	known	p.Q248H	1.000	60	0%	72	20.8%	2	0%	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	superfamily_SSF48452
TTC24	164118	genome.wustl.edu	37	1	156552849	156552849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105669.2	+1	provisional	p.R29Q	1.000	38	0%	49	18.4%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_TPR-like
GPATCH4	54865	genome.wustl.edu	37	1	156565634	156565634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015590.2	-1	validated	p.R167C	1.000	50	0%	69	15.9%	39	28.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NES	10763	genome.wustl.edu	37	1	156640790	156640790	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006617.1	-1	reviewed	p.E1064*	0.024	21	0%	29	17.2%	7	0%	-	-	-	NULL
ISG20L2	81875	genome.wustl.edu	37	1	156697197	156697197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030980.1	-1	provisional	p.A83D	0.011	157	0%	168	27.4%	16	18.7%	possibly_damaging(0.481)	deleterious(0.03)	deleterious(0.524)	NULL
PRCC	5546	genome.wustl.edu	37	1	156764533	156764533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005973.4	+1	reviewed	p.L419P	1.000	408	0%	141	16.3%	105	20%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
INSRR	3645	genome.wustl.edu	37	1	156812301	156812301	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014215.1	-1	validated	e18-1	1.000	112	0.9%	136	25%	0	-	-	-	-	-
NTRK1	4914	genome.wustl.edu	37	1	156849949	156849949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002529.3	+1	reviewed	p.E735D	1.000	46	0%	35	14.3%	0	-	possibly_damaging(0.677)	deleterious(0.02)	deleterious(0.624)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ARHGEF11	9826	genome.wustl.edu	37	1	156916532	156916532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198236.1	-1	reviewed	p.F872L	1.000	171	0%	117	13.7%	15	13.3%	possibly_damaging(0.725)	tolerated(0.16)	neutral(0.323)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
ARHGEF11	9826	genome.wustl.edu	37	1	156949031	156949031	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198236.1	-1	reviewed	p.K107	1.000	409	0%	194	10.3%	6	0%	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
ETV3	2117	genome.wustl.edu	37	1	157095477	157095477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145312.1	-1	validated	p.P232H	1.000	286	0%	135	23.7%	2	50%	probably_damaging(0.997)	deleterious(0.05)	deleterious(0.811)	NULL
ETV3	2117	genome.wustl.edu	37	1	157095675	157095675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145312.1	-1	validated	p.P166L	0.874	185	0.5%	102	20.6%	3	33.3%	benign(0.051)	deleterious(0)	neutral(0.448)	"superfamily_""Winged helix"" DNA-binding domain"
FCRL5	83416	genome.wustl.edu	37	1	157516938	157516938	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031281.2	-1	validated	p.V34	0.005	264	0%	58	27.6%	1	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
FCRL3	115352	genome.wustl.edu	37	1	157667043	157667043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052939.3	-1	reviewed	p.R244I	0.000	204	0%	81	23.5%	2	0%	benign(0)	deleterious(0.02)	neutral(0.383)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
KIRREL	55243	genome.wustl.edu	37	1	158063226	158063226	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018240.5	+1	validated	p.R523	1.000	218	0%	165	18.8%	16	43.7%	-	-	-	NULL
CD1A	909	genome.wustl.edu	37	1	158226842	158226842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001763.2	+1	reviewed	p.V291I	0.011	196	0%	129	27.9%	7	0%	benign(0)	tolerated(1)	-	HMMPfam_C1-set,superfamily_SSF48726
CD1C	911	genome.wustl.edu	37	1	158263043	158263043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001765.2	+1	reviewed	p.V311L	0.001	1075	0%	381	20.5%	4	0%	benign(0.047)	tolerated(0.09)	neutral(0.299)	NULL
SPTA1	6708	genome.wustl.edu	37	1	158637833	158637833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003126.2	-1	reviewed	p.S618N	0.998	421	0%	195	23.6%	0	-	possibly_damaging(0.762)	deleterious(0.02)	deleterious(0.665)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158651365	158651365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003126.2	-1	reviewed	p.Q161H	0.998	287	0%	47	23.4%	0	-	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
OR6K6	128371	genome.wustl.edu	37	1	158724737	158724737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005184.1	+1	provisional	p.M44I	0.000	334	0%	244	22.1%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_Family A G protein-coupled receptor-like
CADM3	57863	genome.wustl.edu	37	1	159163756	159163756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021189.3	+1	validated	p.S240N	0.000	211	0%	128	32%	0	-	benign(0)	tolerated(0.5)	neutral(0.010)	HMMSmart_IG,HMMPfam_C2-set_2,superfamily_SSF48726
DARC	2532	genome.wustl.edu	37	1	159175859	159175859	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122951.1	+1	reviewed	p.H212	0.000	203	0%	89	24.7%	45	0%	-	-	-	NULL
FCRL6	343413	genome.wustl.edu	37	1	159784013	159784013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004310.2	+1	validated	p.H360Y	0.000	395	0.3%	181	11%	11	0%	benign(0.01)	tolerated(0.1)	neutral(0.287)	NULL
C1orf204	284677	genome.wustl.edu	37	1	159810526	159810526	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134233.1	-1	predicted	p.P191	0.044	128	0%	73	23.3%	0	-	-	-	-	NULL
CCDC19	25790	genome.wustl.edu	37	1	159842755	159842755	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000426543	-1	known	p.G380*	0.999	270	0%	136	25.7%	23	56.5%	benign(0.066)	tolerated(0.09)	neutral(0.301)	NULL
IGSF9	57549	genome.wustl.edu	37	1	159898557	159898557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135050.1	-1	validated	p.R874Q	0.000	11	0%	15	33.3%	2	0%	benign(0.006)	tolerated(0.5)	neutral(0.010)	NULL
ATP1A2	477	genome.wustl.edu	37	1	160098787	160098787	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000702.3	+1	reviewed	p.R412*	1.000	109	0%	77	22.1%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP1A4	480	genome.wustl.edu	37	1	160144465	160144465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144699.3	+1	reviewed	p.V747I	1.000	259	0.4%	89	14.6%	0	-	possibly_damaging(0.734)	deleterious(0)	deleterious(0.713)	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
CASQ1	844	genome.wustl.edu	37	1	160165779	160165779	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001231.4	+1	reviewed	p.S242	0.758	229	0%	187	21.9%	0	-	-	-	-	HMMPfam_Calsequestrin,superfamily_Thiordxn-like_fd
DCAF8	50717	genome.wustl.edu	37	1	160188740	160188740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015726.3	-1	reviewed	p.H487N	1.000	216	0%	114	25.4%	56	30.3%	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DCAF8	50717	genome.wustl.edu	37	1	160209667	160209667	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015726.3	-1	reviewed	p.Q181	1.000	78	0%	55	29.1%	41	43.9%	-	-	-	superfamily_WD40 repeat-like
DCAF8	50717	genome.wustl.edu	37	1	160210070	160210070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015726.3	-1	reviewed	p.S47N	1.000	141	0%	101	21.8%	32	43.7%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
PEX19	5824	genome.wustl.edu	37	1	160249616	160249616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002857.3	-1	reviewed	p.P264H	1.000	180	0%	95	21.1%	23	34.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pex19
PEX19	5824	genome.wustl.edu	37	1	160252884	160252884	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002857.3	-1	reviewed	p.S66A	1.000	167	0%	97	18.6%	24	41.6%	unknown(0)	-	-	HMMPfam_Pex19
NCSTN	23385	genome.wustl.edu	37	1	160318809	160318809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015331.2	+1	reviewed	p.G71W	1.000	264	0%	107	12.1%	35	8.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VANGL2	57216	genome.wustl.edu	37	1	160385639	160385639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020335.1	+1	validated	p.E4D	1.000	16	0%	24	25%	2	0%	unknown(0)	tolerated(0.31)	-	NULL
VANGL2	57216	genome.wustl.edu	37	1	160388873	160388873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020335.1	+1	validated	p.A92T	1.000	85	0%	95	22.1%	6	33.3%	benign(0)	tolerated(0.71)	neutral(0.002)	HMMPfam_Strabismus
SLAMF1	6504	genome.wustl.edu	37	1	160604472	160604472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003037.2	-1	validated	p.V211M	0.022	461	0%	431	19.5%	8	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
LY9	4063	genome.wustl.edu	37	1	160797575	160797575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002348.2	+1	validated	p.P646H	0.550	243	0%	105	22.9%	12	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
USF1	7391	genome.wustl.edu	37	1	161009800	161009800	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007122.3	-1	reviewed	e10-1	1.000	320	0%	253	11.1%	24	87.5%	-	-	-	-
ARHGAP30	257106	genome.wustl.edu	37	1	161017742	161017742	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001025598.1	-1	validated	p.E1023	0.999	134	0%	143	23.8%	36	0%	-	-	-	NULL
ARHGAP30	257106	genome.wustl.edu	37	1	161018200	161018200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001025598.1	-1	validated	p.E871K	0.000	257	0%	244	23.4%	34	0%	benign(0.054)	deleterious(0.01)	neutral(0.409)	NULL
USP21	27005	genome.wustl.edu	37	1	161130638	161130638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014443.2	+1	reviewed	p.R70W	0.999	59	0%	65	27.7%	13	23%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPOX	5498	genome.wustl.edu	37	1	161138868	161138868	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000309.3	+1	reviewed	p.E234	1.000	97	0%	108	24.1%	13	53.8%	-	-	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
B4GALT3	8703	genome.wustl.edu	37	1	161141753	161141753	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003779.2	-1	reviewed	p.D345	1.000	170	0%	117	15.4%	46	21.7%	-	-	-	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
B4GALT3	8703	genome.wustl.edu	37	1	161143749	161143749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003779.2	-1	reviewed	p.H194Y	1.000	263	0%	225	21.3%	37	37.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
ADAMTS4	9507	genome.wustl.edu	37	1	161161091	161161091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005099.4	-1	reviewed	p.Q784R	1.000	53	0%	39	23.1%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ADAM_spacer1
NDUFS2	4720	genome.wustl.edu	37	1	161183479	161183479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004550.4	+1	reviewed	p.R418H	1.000	297	0%	148	18.9%	264	39%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Complex1_49kDa,superfamily_SSF56762
MPZ	4359	genome.wustl.edu	37	1	161276237	161276237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000530.6	-1	reviewed	p.V166I	1.000	241	0%	193	13.5%	0	-	benign(0.415)	tolerated(0.1)	neutral(0.421)	NULL
SDHC	6391	genome.wustl.edu	37	1	161310401	161310401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003001.3	+1	reviewed	p.A66V	0.086	764	0%	388	20.6%	147	42.8%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_Sdh_cyt,PatternScan_SDH_CYT_1,superfamily_SSF81343
SDHC	6391	genome.wustl.edu	37	1	161332149	161332149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003001.3	+1	reviewed	p.P146S	0.781	454	0%	240	16.7%	136	43.3%	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_Sdh_cyt,superfamily_SSF81343
FCGR2A	2212	genome.wustl.edu	37	1	161476347	161476347	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136219.1	+1	reviewed	p.S110	0.026	218	0%	131	16.8%	10	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
FCRLA	84824	genome.wustl.edu	37	1	161680570	161680570	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032738.3	+1	reviewed	p.Q51*	0.555	105	0%	50	12%	0	-	-	-	-	NULL
ATF6	22926	genome.wustl.edu	37	1	161789483	161789483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007348.2	+1	validated	p.R324C	0.974	179	0%	102	18.6%	26	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1
OLFML2B	25903	genome.wustl.edu	37	1	161993047	161993047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015441.1	-1	provisional	p.Q58H	1.000	182	0%	248	19%	9	0%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
NOS1AP	9722	genome.wustl.edu	37	1	162325137	162325137	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014697.2	+1	reviewed	p.G252	0.013	129	0%	62	17.7%	2	0%	-	-	-	NULL
C1orf226	400793	genome.wustl.edu	37	1	162353030	162353030	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001085375.1	+1	validated	p.R126*	1.000	123	0%	87	20.7%	3	33.3%	-	-	-	NULL
SH2D1B	117157	genome.wustl.edu	37	1	162372547	162372547	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053282.4	-1	validated	p.H60	0.009	696	0%	400	22.5%	0	-	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
UAP1	6675	genome.wustl.edu	37	1	162535967	162535967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003115.4	+1	validated	p.L37I	1.000	278	0%	348	27%	24	41.6%	benign(0.427)	tolerated(0.29)	neutral(0.168)	superfamily_Nucleotide-diphospho-sugar transferases
DDR2	4921	genome.wustl.edu	37	1	162731237	162731237	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014796.1	+1	reviewed	p.F364	1.000	195	0%	48	25%	2	0%	-	-	-	NULL
HSD17B7	51478	genome.wustl.edu	37	1	162767618	162767618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016371.2	+1	validated	p.A120D	1.000	385	0%	255	19.6%	4	0%	possibly_damaging(0.5)	deleterious(0)	deleterious(0.612)	superfamily_NAD(P)-binding Rossmann-fold domains
C1orf110	339512	genome.wustl.edu	37	1	162825017	162825017	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178550.4	-1	validated	p.C149	0.006	341	0%	197	15.2%	0	-	-	-	-	NULL
RGS4	5999	genome.wustl.edu	37	1	163042616	163042616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102445.2	+1	reviewed	p.K154N	1.000	232	0%	58	29.3%	2	0%	probably_damaging(0.962)	tolerated(0.28)	neutral(0.436)	superfamily_Regulat_G_prot_signal_superfam
NUF2	83540	genome.wustl.edu	37	1	163297307	163297307	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031423.3	+1	reviewed	p.R51S	1.000	679	0%	628	20.9%	20	40%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Nuf2
NUF2	83540	genome.wustl.edu	37	1	163298063	163298063	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031423.3	+1	reviewed	p.F82V	1.000	428	0%	311	12.5%	13	30.7%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	HMMPfam_Nuf2
PBX1	5087	genome.wustl.edu	37	1	164761854	164761854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002585.2	+1	validated	p.A130V	1.000	33	0%	28	25%	0	-	benign(0.017)	tolerated(0.17)	neutral(0.059)	HMMPfam_PBC
LMX1A	4009	genome.wustl.edu	37	1	165173152	165173152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177398.3	-1	validated	p.L372M	1.000	176	0%	85	24.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RXRG	6258	genome.wustl.edu	37	1	165386339	165386339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006917.3	-1	reviewed	p.Q187H	1.000	191	0%	66	21.2%	0	-	possibly_damaging(0.589)	tolerated(0.29)	neutral(0.232)	HMMPfam_zf-C4,HMMSmart_ZnF_C4,superfamily_SSF57716
LRRC52	440699	genome.wustl.edu	37	1	165513624	165513624	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005214.3	+1	validated	p.L31	0.409	286	0%	85	15.3%	0	-	-	-	-	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058
LRRC52	440699	genome.wustl.edu	37	1	165513863	165513863	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005214.3	+1	validated	p.S110	1.000	283	0%	92	19.6%	0	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
DUSP27	92235	genome.wustl.edu	37	1	167088508	167088508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080426.1	+1	provisional	p.R154G	0.981	240	0%	228	17.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
DUSP27	92235	genome.wustl.edu	37	1	167095134	167095134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080426.1	+1	provisional	p.R256C	1.000	142	0%	121	20.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
DUSP27	92235	genome.wustl.edu	37	1	167095469	167095469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080426.1	+1	provisional	p.Q367H	0.004	86	0%	76	11.8%	0	-	possibly_damaging(0.653)	deleterious(0.04)	deleterious(0.579)	NULL
DUSP27	92235	genome.wustl.edu	37	1	167095707	167095707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080426.1	+1	provisional	p.D447N	0.906	22	0%	26	23.1%	0	-	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
POU2F1	5451	genome.wustl.edu	37	1	167370733	167370733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002697.2	+1	provisional	p.L476I	1.000	245	0%	68	33.8%	1	0%	possibly_damaging(0.806)	deleterious(0.03)	deleterious(0.668)	NULL
CREG1	8804	genome.wustl.edu	37	1	167515375	167515375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003851.2	-1	reviewed	p.I208L	0.997	275	0%	197	19.8%	80	28.7%	benign(0.002)	tolerated(0.66)	neutral(0.003)	NULL
MPZL1	9019	genome.wustl.edu	37	1	167741533	167741533	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003953.5	+1	validated	p.Q94*	0.453	515	0%	343	23%	15	13.3%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
MPZL1	9019	genome.wustl.edu	37	1	167742529	167742529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003953.5	+1	validated	p.L177I	0.041	612	0%	436	22%	11	9%	benign(0.002)	tolerated(0.38)	neutral(0.018)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167815024	167815024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018417.4	-1	reviewed	p.F928L	0.846	277	0.4%	88	26.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167825402	167825402	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018417.4	-1	reviewed	e16+1	0.921	399	0%	114	21.9%	0	-	-	-	-	-
ADCY10	55811	genome.wustl.edu	37	1	167825658	167825658	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018417.4	-1	reviewed	p.I639N	0.040	232	0%	67	19.4%	0	-	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167865850	167865850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018417.4	-1	reviewed	p.P241H	0.991	239	0.4%	202	21.3%	0	-	probably_damaging(0.992)	deleterious(0.05)	deleterious(0.793)	NULL
DCAF6	55827	genome.wustl.edu	37	1	167973771	167973771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018442.2	+1	validated	p.G373D	1.000	198	0%	122	22.1%	43	48.8%	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	superfamily_WD40_like
GPR161	23432	genome.wustl.edu	37	1	168065999	168065999	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153832.1	-1	provisional	p.T282	0.996	47	0%	43	27.9%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR161	23432	genome.wustl.edu	37	1	168066175	168066175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153832.1	-1	provisional	p.C224R	1.000	86	0%	46	23.9%	2	50%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ANKRD36BP1	84832	genome.wustl.edu	37	1	168216095	168216095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000358576	-1	known	p.D63E	0.997	121	0%	84	14.3%	7	42.8%	probably_damaging(0.995)	tolerated(0.35)	deleterious(0.478)	NULL
TBX19	9095	genome.wustl.edu	37	1	168262437	168262437	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000431969	+1	known	p.W107*	1.000	417	0%	252	20.2%	0	-	possibly_damaging(0.874)	deleterious(0.01)	deleterious(0.745)	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors
ATP1B1	481	genome.wustl.edu	37	1	169100767	169100767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001677.3	+1	reviewed	p.D296N	1.000	120	0%	62	25.8%	366	40.4%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_Na_K-ATPase
NME7	29922	genome.wustl.edu	37	1	169267807	169267807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013330.3	-1	validated	p.A212V	0.999	139	0%	51	23.5%	24	41.6%	benign(0.004)	tolerated(0.21)	neutral(0.044)	HMMPfam_NDK,HMMSmart_SM00562,superfamily_Nucleoside diphosphate kinases
NME7	29922	genome.wustl.edu	37	1	169293678	169293678	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013330.3	-1	validated	p.R22*	0.997	428	0%	211	19.9%	18	22.2%	-	-	-	HMMSmart_SM00676
F5	2153	genome.wustl.edu	37	1	169509950	169509950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000130.4	-1	reviewed	p.L1460I	0.205	350	0%	161	11.8%	0	-	possibly_damaging(0.621)	tolerated(0.32)	neutral(0.240)	HMMPfam_LSPR
F5	2153	genome.wustl.edu	37	1	169510471	169510471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000130.4	-1	reviewed	p.S1286F	0.107	1136	0%	630	21.6%	0	-	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	HMMPfam_LSPR
F5	2153	genome.wustl.edu	37	1	169519189	169519189	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000130.4	-1	reviewed	p.I487	0.369	701	0%	265	26%	0	-	-	-	-	superfamily_Cupredoxins
F5	2153	genome.wustl.edu	37	1	169519958	169519958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000130.4	-1	reviewed	p.A439V	1.000	301	0%	124	25.8%	1	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	superfamily_Cupredoxins
F5	2153	genome.wustl.edu	37	1	169528485	169528485	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000130.4	-1	reviewed	p.V212	1.000	228	0%	56	28.6%	0	-	-	-	-	superfamily_Cupredoxins
F5	2153	genome.wustl.edu	37	1	169529846	169529846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000130.4	-1	reviewed	p.L178M	0.966	475	0%	154	11%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	superfamily_Cupredoxins
F5	2153	genome.wustl.edu	37	1	169551753	169551753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000130.4	-1	reviewed	p.L56I	0.011	126	0%	68	26.5%	0	-	benign(0.031)	tolerated(0.18)	neutral(0.058)	superfamily_Cupredoxins
SELP	6403	genome.wustl.edu	37	1	169564066	169564066	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003005.3	-1	reviewed	p.C717*	1.000	372	0%	144	20.1%	7	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SELP	6403	genome.wustl.edu	37	1	169572380	169572380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003005.3	-1	reviewed	p.S530F	0.008	283	0%	75	20%	7	0%	benign(0.005)	tolerated(0.82)	neutral(0.001)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SELP	6403	genome.wustl.edu	37	1	169578790	169578790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003005.3	-1	reviewed	p.R429W	0.000	157	0.6%	49	20.4%	3	0%	benign(0.022)	deleterious(0.01)	neutral(0.407)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SELP	6403	genome.wustl.edu	37	1	169580898	169580898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003005.3	-1	reviewed	p.L327M	0.101	123	0%	53	18.9%	5	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SELL	6402	genome.wustl.edu	37	1	169673845	169673845	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000655.4	-1	reviewed	p.C210	0.015	206	0%	39	23.1%	8	0%	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
SELE	6401	genome.wustl.edu	37	1	169697037	169697037	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000450.2	-1	reviewed	p.P437	0.000	129	0%	42	21.4%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
C1orf112	55732	genome.wustl.edu	37	1	169812866	169812866	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018186.2	+1	predicted	p.L634	0.314	587	0%	193	24.9%	11	18.1%	-	-	-	NULL
SCYL3	57147	genome.wustl.edu	37	1	169838173	169838173	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181093.2	-1	validated	p.A211	0.988	250	0%	114	21.9%	8	37.5%	-	-	-	HMMSmart_SM00220,superfamily_ARM repeat
LOC646804	646804	genome.wustl.edu	37	1	171053211	171053211	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_929761.3	+1	model	p.W193*	0.463	242	0%	176	12.5%	0	-	-	-	-	NULL
FMO2	2327	genome.wustl.edu	37	1	171174561	171174561	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001460.2	+1	reviewed	p.V324G	0.483	292	0%	62	19.4%	0	-	possibly_damaging(0.862)	tolerated(0.08)	deleterious(0.633)	HMMPfam_FMO-like
FMO4	2329	genome.wustl.edu	37	1	171289024	171289024	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002022.1	+1	reviewed	p.C20*	1.000	379	0%	94	21.3%	1	0%	-	-	-	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
FMO4	2329	genome.wustl.edu	37	1	171303645	171303645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002022.1	+1	reviewed	p.T308I	1.000	180	0%	37	16.2%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_FMO-like
MYOC	4653	genome.wustl.edu	37	1	171605656	171605656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000261.1	-1	reviewed	p.M308I	0.002	92	0%	34	23.5%	3	0%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_OLF,HMMSmart_SM00284
DNM3	26052	genome.wustl.edu	37	1	172013549	172013549	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015569.3	+1	validated	p.R385*	1.000	256	0.4%	42	26.2%	0	-	-	-	-	HMMPfam_Dynamin_M
PIGC	5279	genome.wustl.edu	37	1	172411114	172411114	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002642.3	-1	reviewed	p.Q217*	1.000	213	0%	154	14.9%	57	17.5%	-	-	-	HMMPfam_GPI2
C1orf105	92346	genome.wustl.edu	37	1	172437650	172437650	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139240.3	+1	validated	p.L156	0.045	185	0%	82	26.8%	2	50%	-	-	-	NULL
C1orf9	51430	genome.wustl.edu	37	1	172501718	172501718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000367723	+1	known	p.H36Y	0.000	205	0%	279	18.6%	0	-	benign(0)	-	-	NULL
C1orf9	51430	genome.wustl.edu	37	1	172579295	172579295	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014283.3	+1	validated	p.Q1221*	1.000	184	0%	49	28.6%	15	53.3%	-	-	-	NULL
TNFSF18	8995	genome.wustl.edu	37	1	173010763	173010763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005092.3	-1	reviewed	p.G115D	0.759	363	0%	116	13.8%	1	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_TNF,superfamily_TNF_like
PRDX6	9588	genome.wustl.edu	37	1	173454533	173454533	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004905.2	+1	reviewed	p.E96*	0.996	468	0%	378	24.9%	343	0.2%	-	-	-	HMMPfam_AhpC-TSA,superfamily_Thioredoxin-like
SLC9A11	284525	genome.wustl.edu	37	1	173499102	173499102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178527.3	-1	validated	p.S752N	1.000	640	0%	255	16.1%	0	-	possibly_damaging(0.947)	deleterious(0.01)	deleterious(0.796)	NULL
SLC9A11	284525	genome.wustl.edu	37	1	173526528	173526528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178527.3	-1	validated	p.A389D	1.000	318	0%	154	16.9%	0	-	probably_damaging(0.997)	tolerated(0.15)	deleterious(0.707)	HMMPfam_Na_H_Exchanger
SLC9A11	284525	genome.wustl.edu	37	1	173567054	173567054	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178527.3	-1	validated	p.M116L	0.101	462	0%	252	17.1%	1	100%	benign(0.002)	tolerated(1)	-	HMMPfam_Na_H_Exchanger
CENPL	91687	genome.wustl.edu	37	1	173780327	173780327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127181.2	-1	validated	p.Q37H	0.118	359	0%	172	23.3%	4	25%	benign(0.004)	tolerated(0.41)	neutral(0.015)	NULL
DARS2	55157	genome.wustl.edu	37	1	173797501	173797501	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018122.4	+1	reviewed	p.F86	1.000	483	0%	518	22.6%	6	33.3%	-	-	-	HMMPfam_tRNA_anti,superfamily_Nucleic_acid_OB
DARS2	55157	genome.wustl.edu	37	1	173823017	173823017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018122.4	+1	reviewed	p.R550C	0.825	323	0%	191	20.4%	36	50%	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	HMMPfam_tRNA-synt_2,superfamily_SSF55681
RC3H1	149041	genome.wustl.edu	37	1	173939754	173939754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172071.2	-1	validated	p.P408H	1.000	316	0%	221	24.4%	0	-	possibly_damaging(0.76)	deleterious(0.03)	deleterious(0.645)	superfamily_CCCH zinc finger
RC3H1	149041	genome.wustl.edu	37	1	173950064	173950064	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172071.2	-1	validated	p.D284	1.000	258	0%	171	18.1%	3	66.6%	-	-	-	NULL
RABGAP1L	9910	genome.wustl.edu	37	1	174219703	174219703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014857.3	+1	validated	p.D270N	1.000	368	0.3%	259	21.6%	4	0%	possibly_damaging(0.592)	tolerated(0.67)	neutral(0.207)	NULL
CACYBP	27101	genome.wustl.edu	37	1	174973919	174973919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014412.2	+1	reviewed	p.A62V	1.000	264	0%	222	27%	193	48.7%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Siah-Interact_N
PAPPA2	60676	genome.wustl.edu	37	1	176564281	176564281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020318.2	+1	validated	p.N514S	0.939	104	0%	78	26.9%	0	-	possibly_damaging(0.712)	tolerated(0.35)	neutral(0.278)	NULL
PAPPA2	60676	genome.wustl.edu	37	1	176668317	176668317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020318.2	+1	validated	p.T943M	1.000	108	0%	39	20.5%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Peptidase_M43
PAPPA2	60676	genome.wustl.edu	37	1	176811536	176811536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020318.2	+1	validated	p.D1774E	1.000	373	0%	78	21.8%	0	-	possibly_damaging(0.758)	tolerated(0.28)	neutral(0.312)	NULL
ASTN1	460	genome.wustl.edu	37	1	176833450	176833450	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004319.1	-1	validated	p.Y1285	1.000	208	0%	95	20%	0	-	-	-	-	NULL
ASTN1	460	genome.wustl.edu	37	1	176918334	176918334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004319.1	-1	validated	p.L681I	1.000	49	0%	24	25%	0	-	possibly_damaging(0.667)	tolerated(0.27)	neutral(0.269)	NULL
ASTN1	460	genome.wustl.edu	37	1	176999963	176999963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004319.1	-1	validated	p.R331W	1.000	678	0%	521	21.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM5B	57795	genome.wustl.edu	37	1	177226448	177226448	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021165.2	+1	provisional	p.A199	1.000	80	0%	37	29.7%	0	-	-	-	-	HMMSmart_SM00457
FAM5B	57795	genome.wustl.edu	37	1	177249929	177249929	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021165.2	+1	provisional	p.G539	1.000	43	0%	43	25.6%	0	-	-	-	-	NULL
FAM5B	57795	genome.wustl.edu	37	1	177250007	177250007	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021165.2	+1	provisional	p.H565	0.994	133	0%	87	17.2%	0	-	-	-	-	NULL
FAM5B	57795	genome.wustl.edu	37	1	177250282	177250282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021165.2	+1	provisional	p.S657F	1.000	70	0%	81	18.5%	0	-	possibly_damaging(0.8)	tolerated(0.26)	neutral(0.335)	NULL
SEC16B	89866	genome.wustl.edu	37	1	177898960	177898960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000239472	-1	known	p.D788Y	0.001	284	0%	175	20.6%	8	50%	unknown(0)	-	-	NULL
RALGPS2	55103	genome.wustl.edu	37	1	178875975	178875975	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152663.3	+1	validated	p.S565	1.000	446	0%	131	16%	5	60%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ABL2	27	genome.wustl.edu	37	1	179077805	179077805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007314.3	-1	reviewed	p.S866Y	1.000	121	0%	99	30.3%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
SOAT1	6646	genome.wustl.edu	37	1	179312000	179312000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003101.4	+1	provisional	p.T288N	0.130	568	0%	220	19.1%	30	36.6%	benign(0.004)	tolerated(0.48)	neutral(0.011)	HMMPfam_MBOAT
NPHS2	7827	genome.wustl.edu	37	1	179526248	179526248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014625.2	-1	reviewed	p.V218M	1.000	348	0%	105	26.7%	0	-	benign(0.119)	deleterious(0)	neutral(0.454)	HMMPfam_Band_7,HMMSmart_SM00244
TDRD5	163589	genome.wustl.edu	37	1	179632616	179632616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173533.2	+1	provisional	p.R826M	0.000	269	0%	164	25%	1	0%	benign(0.242)	deleterious(0)	deleterious(0.469)	NULL
TOR1AIP1	26092	genome.wustl.edu	37	1	179853880	179853880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015602.2	+1	validated	p.V177I	0.131	320	0.3%	339	21.5%	12	58.3%	benign(0.003)	tolerated(0.67)	neutral(0.003)	HMMPfam_LAP1C
TOR1AIP1	26092	genome.wustl.edu	37	1	179887250	179887250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015602.2	+1	validated	p.S543F	0.666	109	0%	60	15%	23	43.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_LAP1C
CEP350	9857	genome.wustl.edu	37	1	179989090	179989090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014810.4	+1	reviewed	p.D727E	0.957	148	0%	137	17.5%	1	100%	benign(0.052)	tolerated(0.11)	neutral(0.275)	NULL
LHX4	89884	genome.wustl.edu	37	1	180241032	180241032	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033343.2	+1	reviewed	p.R223	1.000	167	0%	124	21.8%	0	-	-	-	-	NULL
LHX4	89884	genome.wustl.edu	37	1	180243366	180243366	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033343.2	+1	reviewed	p.G275	1.000	112	0%	93	26.9%	0	-	-	-	-	NULL
ACBD6	84320	genome.wustl.edu	37	1	180366704	180366704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032360.3	-1	validated	p.H204Y	1.000	157	0%	83	21.7%	167	49.7%	benign(0.146)	tolerated(0.07)	neutral(0.332)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
XPR1	9213	genome.wustl.edu	37	1	180775267	180775267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004736.3	+1	validated	p.A173T	1.000	231	0%	75	21.3%	9	55.5%	probably_damaging(0.981)	tolerated(0.06)	deleterious(0.748)	HMMPfam_SPX
KIAA1614	57710	genome.wustl.edu	37	1	180886006	180886006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020950.1	+1	validated	p.S256I	0.002	114	0%	160	29.4%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
MR1	3140	genome.wustl.edu	37	1	181021612	181021612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001531.1	+1	provisional	p.H282Q	0.288	118	0%	108	32.4%	7	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
CACNA1E	777	genome.wustl.edu	37	1	181688936	181688936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000721.2	+1	reviewed	p.G563D	1.000	413	0%	216	13%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181690901	181690901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000721.2	+1	reviewed	p.T655M	1.000	313	0%	173	16.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181702679	181702679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000721.2	+1	reviewed	p.V1019M	0.000	77	0%	79	29.1%	0	-	benign(0.029)	tolerated(0.19)	neutral(0.051)	NULL
CACNA1E	777	genome.wustl.edu	37	1	181707519	181707519	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000721.2	+1	reviewed	p.D1190A	1.000	586	0%	377	21%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181753841	181753841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000721.2	+1	reviewed	p.T1839A	1.000	159	0%	92	9.8%	0	-	benign(0.014)	deleterious(0)	neutral(0.445)	NULL
TEDDM1	127670	genome.wustl.edu	37	1	182368841	182368841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172000.3	-1	validated	p.E260D	0.013	174	0%	132	27.3%	0	-	benign(0.008)	tolerated(0.75)	neutral(0.002)	NULL
RNASEL	6041	genome.wustl.edu	37	1	182553237	182553237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021133.2	-1	reviewed	p.Q515H	0.017	470	0%	163	11%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
RNASEL	6041	genome.wustl.edu	37	1	182553262	182553262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021133.2	-1	reviewed	p.S507N	0.459	449	0%	156	22.4%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
NPL	80896	genome.wustl.edu	37	1	182797967	182797967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030769.1	+1	provisional	p.A296V	0.260	266	0%	246	21.1%	14	0%	unknown(0)	deleterious(0.03)	-	HMMPfam_DHDPS,superfamily_Aldolase
DHX9	1660	genome.wustl.edu	37	1	182841507	182841507	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001357.4	+1	reviewed	p.V531	1.000	536	0%	230	22.6%	47	46.8%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
SHCBP1L	81626	genome.wustl.edu	37	1	182921921	182921921	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030933.2	-1	validated	p.G116	0.202	46	0%	48	45.8%	1	0%	-	-	-	NULL
LAMC2	3918	genome.wustl.edu	37	1	183209311	183209311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005562.2	+1	reviewed	p.T1069M	0.000	527	0%	152	17.1%	79	46.8%	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
LAMC2	3918	genome.wustl.edu	37	1	183209455	183209455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005562.2	+1	reviewed	p.T1086I	0.025	246	0%	92	22.8%	98	43.8%	benign(0.013)	tolerated(0.29)	neutral(0.030)	NULL
SMG7	9887	genome.wustl.edu	37	1	183519994	183519994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173156.2	+1	validated	p.P1031H	1.000	502	0.2%	102	20.6%	24	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NCF2	4688	genome.wustl.edu	37	1	183539914	183539914	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000433.3	-1	reviewed	e6+1	1.000	189	0%	74	17.6%	0	-	-	-	-	-
RGL1	23179	genome.wustl.edu	37	1	183885836	183885836	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015149.3	+1	validated	e16+1	1.000	252	0%	73	26%	0	-	-	-	-	-
FAM129A	116496	genome.wustl.edu	37	1	184765058	184765058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052966.2	-1	validated	p.L614I	0.000	59	0%	42	23.8%	3	0%	benign(0.026)	tolerated(0.23)	neutral(0.043)	NULL
IVNS1ABP	10625	genome.wustl.edu	37	1	185267253	185267253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006469.4	-1	validated	p.D615N	1.000	378	0.3%	147	23.8%	289	41.5%	benign(0.23)	tolerated(0.36)	neutral(0.043)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
HMCN1	83872	genome.wustl.edu	37	1	185953325	185953325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031935.2	+1	reviewed	p.V939M	1.000	327	0%	91	22%	0	-	probably_damaging(0.991)	tolerated(0.05)	deleterious(0.789)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186010192	186010192	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031935.2	+1	reviewed	p.S2076	1.000	379	0%	74	28.4%	1	100%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186037127	186037127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031935.2	+1	reviewed	p.R2623C	0.970	276	0%	48	25%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186043884	186043884	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031935.2	+1	reviewed	p.S2717	0.985	292	0.3%	64	18.8%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186056647	186056647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031935.2	+1	reviewed	p.S3078Y	0.804	193	0%	52	28.8%	0	-	possibly_damaging(0.848)	tolerated(0.17)	neutral(0.385)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186057358	186057358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031935.2	+1	reviewed	p.T3176N	1.000	189	0%	52	25%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186141264	186141264	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031935.2	+1	reviewed	e102+1	1.000	373	0%	102	23.5%	1	100%	-	-	-	-
TPR	7175	genome.wustl.edu	37	1	186294916	186294916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003292.2	-1	reviewed	p.A2031D	1.000	217	0%	123	21.1%	131	45.8%	probably_damaging(0.979)	tolerated(0.47)	neutral(0.433)	NULL
TPR	7175	genome.wustl.edu	37	1	186324542	186324542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003292.2	-1	reviewed	p.R724H	1.000	309	0%	220	25.9%	11	36.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TPR	7175	genome.wustl.edu	37	1	186342564	186342564	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003292.2	-1	reviewed	p.L61	0.931	260	0%	379	14.2%	9	22.2%	-	-	-	NULL
FAM5C	339479	genome.wustl.edu	37	1	190068003	190068003	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199051.1	-1	provisional	p.T482	0.001	155	0%	138	20.3%	0	-	-	-	-	NULL
FAM5C	339479	genome.wustl.edu	37	1	190068225	190068225	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199051.1	-1	provisional	p.L408	0.988	38	0%	27	33.3%	0	-	-	-	-	NULL
FAM5C	339479	genome.wustl.edu	37	1	190195306	190195306	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199051.1	-1	provisional	p.C289	1.000	197	0%	52	15.4%	0	-	-	-	-	NULL
RGS13	6003	genome.wustl.edu	37	1	192627410	192627410	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002927.3	+1	reviewed	p.T69	0.957	294	0%	48	22.9%	0	-	-	-	-	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
CDC73	79577	genome.wustl.edu	37	1	193104547	193104547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024529.4	+1	reviewed	p.A112T	1.000	261	0.4%	192	22.4%	16	37.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CDC73	79577	genome.wustl.edu	37	1	193172943	193172943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024529.4	+1	reviewed	p.K331E	0.997	151	0%	58	27.6%	39	48.7%	possibly_damaging(0.561)	tolerated(0.25)	neutral(0.229)	HMMPfam_CDC73
KCNT2	343450	genome.wustl.edu	37	1	196227347	196227347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198503.2	-1	validated	p.L1063S	1.000	280	0%	127	16.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KCNT2	343450	genome.wustl.edu	37	1	196309654	196309654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198503.2	-1	validated	p.I534V	1.000	206	0%	63	22.2%	1	0%	possibly_damaging(0.745)	tolerated(0.08)	deleterious(0.574)	superfamily_NAD(P)-binding Rossmann-fold domains
CFH	3075	genome.wustl.edu	37	1	196706061	196706061	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000186.3	+1	reviewed	p.E841*	0.984	230	0%	82	18.3%	8	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CFH	3075	genome.wustl.edu	37	1	196714984	196714984	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000186.3	+1	reviewed	p.D1116	0.507	603	0%	340	20.3%	19	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CFHR1	3078	genome.wustl.edu	37	1	196795984	196795984	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002113.2	+1	reviewed	p.E93	0.926	370	0%	260	39.6%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CFHR5	81494	genome.wustl.edu	37	1	196946777	196946777	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000367414	+1	known	p.R19*	0.000	367	0%	242	22.3%	0	-	-	-	-	NULL
CFHR5	81494	genome.wustl.edu	37	1	196965315	196965315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030787.3	+1	reviewed	p.E318D	0.001	382	0%	142	19%	0	-	probably_damaging(0.987)	tolerated(0.43)	neutral(0.450)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
F13B	2165	genome.wustl.edu	37	1	197030122	197030122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001994.2	-1	reviewed	p.E179K	0.000	493	0%	160	15%	0	-	benign(0.001)	tolerated(0.62)	neutral(0.004)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
ASPM	259266	genome.wustl.edu	37	1	197055990	197055990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018136.4	-1	reviewed	p.S3425F	0.015	461	0%	66	13.6%	20	70%	possibly_damaging(0.539)	deleterious(0)	deleterious(0.627)	NULL
ASPM	259266	genome.wustl.edu	37	1	197059104	197059104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018136.4	-1	reviewed	p.E3314K	1.000	126	0%	44	18.2%	17	64.7%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ASPM	259266	genome.wustl.edu	37	1	197072146	197072146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018136.4	-1	reviewed	p.G2079C	0.027	125	0%	63	23.8%	2	50%	benign(0.396)	tolerated(0.07)	neutral(0.446)	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197072570	197072570	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018136.4	-1	reviewed	p.G1937	0.012	431	0%	87	12.6%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197073914	197073914	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018136.4	-1	reviewed	p.S1489	0.027	312	0%	74	31.1%	1	0%	-	-	-	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197093433	197093433	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018136.4	-1	reviewed	p.L1066*	0.999	340	0%	145	24.1%	0	-	-	-	-	superfamily_Calponin-homology domain CH-domain
ASPM	259266	genome.wustl.edu	37	1	197099071	197099071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018136.4	-1	reviewed	p.P868H	0.999	283	0%	145	23.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Calponin-homology domain CH-domain
CRB1	23418	genome.wustl.edu	37	1	197390965	197390965	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201253.1	+1	reviewed	p.G669	1.000	204	0%	81	24.7%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
CRB1	23418	genome.wustl.edu	37	1	197403866	197403866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201253.1	+1	reviewed	p.S958I	0.262	281	0%	79	19%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
DENND1B	163486	genome.wustl.edu	37	1	197641193	197641193	+	Silent	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142795.1	-1	validated	p.G90	1.000	269	0%	119	17.6%	0	-	-	-	-	HMMPfam_DENN,HMMSmart_SM00799
LHX9	56956	genome.wustl.edu	37	1	197886957	197886957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020204.2	+1	reviewed	p.E2K	1.000	119	0%	150	22%	0	-	benign(0.144)	deleterious(0)	neutral(0.457)	NULL
LHX9	56956	genome.wustl.edu	37	1	197887043	197887043	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020204.2	+1	reviewed	p.I30	1.000	92	0%	145	13.8%	0	-	unknown(0)	-	-	NULL
LHX9	56956	genome.wustl.edu	37	1	197890505	197890505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020204.2	+1	reviewed	p.R150Q	1.000	70	0%	82	14.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ATP6V1G3	127124	genome.wustl.edu	37	1	198498244	198498244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133262.2	-1	reviewed	p.Q50H	0.945	459	0%	146	19.2%	0	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	HMMPfam_V-ATPase_G
ATP6V1G3	127124	genome.wustl.edu	37	1	198498282	198498282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133262.2	-1	reviewed	p.E38K	1.000	319	0%	103	15.5%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_V-ATPase_G
ATP6V1G3	127124	genome.wustl.edu	37	1	198509757	198509757	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133262.2	-1	reviewed	p.I8	1.000	499	0.2%	131	21.4%	0	-	-	-	-	HMMPfam_V-ATPase_G
PTPRC	5788	genome.wustl.edu	37	1	198711416	198711416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002838.3	+1	reviewed	p.L871M	1.000	519	0%	90	22.2%	51	0%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
NR5A2	2494	genome.wustl.edu	37	1	200017594	200017594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_205860.1	+1	validated	p.G253D	1.000	235	0%	196	15.3%	3	0%	benign(0.002)	tolerated(0.06)	neutral(0.323)	superfamily_Nuclear receptor ligand-binding domain
ZNF281	23528	genome.wustl.edu	37	1	200376985	200376985	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012482.3	-1	provisional	p.K617Q	1.000	360	0%	439	24.6%	7	28.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF281	23528	genome.wustl.edu	37	1	200377290	200377290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012482.3	-1	provisional	p.G515D	1.000	180	0%	182	24.2%	6	66.6%	possibly_damaging(0.668)	tolerated(0.31)	neutral(0.264)	NULL
ZNF281	23528	genome.wustl.edu	37	1	200377635	200377635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012482.3	-1	provisional	p.S400I	1.000	456	0%	568	18.3%	4	50%	possibly_damaging(0.745)	deleterious(0.01)	deleterious(0.679)	NULL
KIF14	9928	genome.wustl.edu	37	1	200529964	200529964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014875.2	-1	validated	p.K1372N	0.000	652	0%	348	22.1%	0	-	benign(0.013)	tolerated(0.49)	neutral(0.011)	NULL
KIF14	9928	genome.wustl.edu	37	1	200558356	200558356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014875.2	-1	validated	p.A1035T	1.000	557	0%	267	19.1%	2	100%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
KIF14	9928	genome.wustl.edu	37	1	200587658	200587658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014875.2	-1	validated	p.R65I	0.998	364	0%	347	23.9%	2	50%	benign(0.066)	deleterious(0)	neutral(0.449)	NULL
DDX59	83479	genome.wustl.edu	37	1	200594047	200594047	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000447706	-1	known	p.K575N	0.000	420	0%	384	11.7%	0	-	unknown(0)	-	-	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200818389	200818389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203459.1	+1	validated	p.S831N	0.984	261	0%	103	16.5%	5	40%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200818865	200818865	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203459.1	+1	validated	p.R990*	1.000	262	0.8%	106	23.6%	19	26.3%	-	-	-	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200823946	200823946	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203459.1	+1	validated	p.V1275	1.000	403	0%	230	27%	3	0%	-	-	-	NULL
C1orf106	55765	genome.wustl.edu	37	1	200869348	200869348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018265.2	+1	validated	p.E184D	0.995	60	0%	61	36.1%	25	52%	possibly_damaging(0.794)	tolerated(0.15)	deleterious(0.539)	NULL
KIF21B	23046	genome.wustl.edu	37	1	200943915	200943915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017596.2	-1	provisional	p.G1568S	0.997	461	0.2%	323	21.1%	3	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
KIF21B	23046	genome.wustl.edu	37	1	200978078	200978078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017596.2	-1	provisional	p.T89M	1.000	80	0%	102	19.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
CACNA1S	779	genome.wustl.edu	37	1	201029873	201029873	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000069.2	-1	reviewed	p.Y1109*	1.000	428	0%	265	21.1%	0	-	-	-	-	superfamily_SSF81324
CACNA1S	779	genome.wustl.edu	37	1	201052333	201052333	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000069.2	-1	reviewed	p.A450	1.000	105	0%	80	16.3%	0	-	-	-	-	superfamily_SSF81324
IGFN1	91156	genome.wustl.edu	37	1	201186557	201186557	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000412892	+1	known	p.L664M	1.000	46	0%	42	21.4%	2	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
NAV1	89796	genome.wustl.edu	37	1	201687545	201687545	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020443.4	+1	reviewed	p.S296	0.997	31	0%	32	18.8%	0	-	-	-	-	NULL
NAV1	89796	genome.wustl.edu	37	1	201757670	201757670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020443.4	+1	reviewed	p.L1024M	1.000	176	0.6%	104	22.1%	3	66.6%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
NAV1	89796	genome.wustl.edu	37	1	201759817	201759817	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020443.4	+1	reviewed	p.Q1082*	1.000	618	0%	365	20.8%	1	0%	-	-	-	NULL
NAV1	89796	genome.wustl.edu	37	1	201762921	201762921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020443.4	+1	reviewed	p.A1108V	1.000	334	0%	210	19%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
IPO9	55705	genome.wustl.edu	37	1	201839904	201839904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018085.4	+1	validated	p.R776Q	1.000	106	0%	52	15.4%	41	29.2%	benign(0.009)	tolerated(0.41)	neutral(0.015)	superfamily_ARM repeat
LMOD1	25802	genome.wustl.edu	37	1	201915238	201915238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012134.2	-1	reviewed	p.K77N	1.000	197	0%	116	22.4%	5	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Tropomodulin
TIMM17A	10440	genome.wustl.edu	37	1	201926501	201926501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006335.2	+1	validated	p.S40Y	1.000	774	0%	666	21%	72	36.1%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_Tim17
PTPN7	5778	genome.wustl.edu	37	1	202121740	202121740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080588.1	-1	reviewed	p.R308C	1.000	106	0%	94	23.4%	19	0%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
PTPN7	5778	genome.wustl.edu	37	1	202128442	202128442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080588.1	-1	reviewed	p.T69M	0.002	176	0%	168	25%	12	0%	possibly_damaging(0.898)	tolerated(0.05)	deleterious(0.700)	NULL
PPP1R12B	4660	genome.wustl.edu	37	1	202465911	202465911	+	Missense_Mutation	SNP	G	G	T	rs186801986	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032105.2	+1	reviewed	p.E817D	0.032	418	0%	135	14.1%	1	0%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
SYT2	127833	genome.wustl.edu	37	1	202568440	202568440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136504.1	-1	validated	p.R320M	1.000	928	0%	511	20%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
SYT2	127833	genome.wustl.edu	37	1	202572241	202572241	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136504.1	-1	validated	p.D117	0.758	305	0%	162	26.5%	0	-	-	-	-	NULL
KDM5B	10765	genome.wustl.edu	37	1	202702817	202702817	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006618.3	-1	validated	p.P1207	0.977	132	0%	123	15.4%	14	7.1%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
KDM5B	10765	genome.wustl.edu	37	1	202710837	202710837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006618.3	-1	validated	p.R868H	1.000	82	0%	168	19.6%	8	12.5%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	HMMPfam_PLU-1
KDM5B	10765	genome.wustl.edu	37	1	202722177	202722177	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006618.3	-1	validated	p.W519*	1.000	208	0%	133	19.5%	2	0%	-	-	-	HMMSmart_SM00558,HMMPfam_JmjC
KLHL12	59349	genome.wustl.edu	37	1	202863726	202863726	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021633.2	-1	provisional	p.Y429*	1.000	196	0%	158	10.8%	13	0%	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
KLHL12	59349	genome.wustl.edu	37	1	202864836	202864836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021633.2	-1	provisional	p.R317C	0.997	164	0%	122	23%	16	81.2%	possibly_damaging(0.793)	deleterious(0.03)	deleterious(0.662)	HMMSmart_Kelch,superfamily_Gal_oxid_central
KLHL12	59349	genome.wustl.edu	37	1	202878227	202878227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021633.2	-1	provisional	p.C248Y	1.000	179	0%	101	12.9%	10	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Gal_oxid_central
CYB5R1	51706	genome.wustl.edu	37	1	202932232	202932232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016243.2	-1	validated	p.R236H	0.986	271	0%	348	23.9%	31	41.9%	benign(0.121)	deleterious(0)	neutral(0.454)	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
CYB5R1	51706	genome.wustl.edu	37	1	202935893	202935893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016243.2	-1	validated	p.R50Q	0.999	56	0%	82	20.7%	31	32.2%	benign(0.246)	tolerated(0.3)	neutral(0.054)	HMMPfam_FAD_binding_6,superfamily_Riboflavin synthase domain-like
LOC100289552	100289552	genome.wustl.edu	37	1	203098248	203098248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342158.1	-1	model	p.A198T	1.000	142	0%	153	20.9%	2	50%	-	-	-	NULL
PRELP	5549	genome.wustl.edu	37	1	203452843	203452843	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002725.3	+1	reviewed	p.R177	1.000	77	0%	65	13.8%	6	0%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
ZC3H11A	9877	genome.wustl.edu	37	1	203798952	203798952	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014827.4	+1	validated	p.Q183*	1.000	203	0%	93	19.4%	5	80%	-	-	-	NULL
GOLT1A	127845	genome.wustl.edu	37	1	204172095	204172095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198447.1	-1	provisional	p.G16S	0.995	262	0%	187	22.5%	3	33.3%	probably_damaging(0.999)	tolerated(0.31)	deleterious(0.517)	NULL
PIK3C2B	5287	genome.wustl.edu	37	1	204424995	204424995	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002646.3	-1	reviewed	p.I644	1.000	69	0%	33	27.3%	4	25%	-	-	-	HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PIK3C2B	5287	genome.wustl.edu	37	1	204425121	204425121	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002646.3	-1	reviewed	p.N602	0.996	131	0%	58	25.9%	4	25%	-	-	-	NULL
MDM4	4194	genome.wustl.edu	37	1	204499878	204499878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002393.3	+1	validated	p.V74I	1.000	624	0%	288	17.4%	3	33.3%	probably_damaging(0.974)	tolerated(0.08)	deleterious(0.716)	HMMPfam_SWIB,superfamily_SWIB/MDM2 domain
MDM4	4194	genome.wustl.edu	37	1	204507119	204507119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000367179	+1	known	p.E26D	0.013	14	0%	15	33.3%	1	0%	benign(0.414)	tolerated(0.13)	neutral(0.387)	NULL
MDM4	4194	genome.wustl.edu	37	1	204518366	204518366	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002393.3	+1	validated	p.T343	0.194	300	0%	131	18.3%	4	50%	-	-	-	NULL
MDM4	4194	genome.wustl.edu	37	1	204518515	204518515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002393.3	+1	validated	p.E393G	1.000	286	0%	103	29.1%	1	100%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
RBBP5	5929	genome.wustl.edu	37	1	205064139	205064139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005057.2	-1	reviewed	p.A484S	1.000	297	0%	89	13.5%	8	25%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
TMCC2	9911	genome.wustl.edu	37	1	205238900	205238900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014858.3	+1	validated	p.R524W	1.000	103	0%	57	24.6%	1	0%	possibly_damaging(0.912)	deleterious(0.02)	deleterious(0.746)	HMMPfam_Tmemb_cc2
NUAK2	81788	genome.wustl.edu	37	1	205277848	205277848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030952.1	-1	provisional	p.S122I	1.000	48	0%	59	22%	21	38%	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
KLHDC8A	55220	genome.wustl.edu	37	1	205312635	205312635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018203.1	-1	provisional	p.V33A	1.000	25	0%	10	40%	0	-	benign(0.073)	deleterious(0.01)	neutral(0.411)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
MFSD4	148808	genome.wustl.edu	37	1	205555180	205555180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181644.4	+1	validated	p.V332M	0.974	79	0%	57	28.1%	0	-	possibly_damaging(0.722)	deleterious(0.01)	deleterious(0.667)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ELK4	2005	genome.wustl.edu	37	1	205589237	205589237	+	Missense_Mutation	SNP	C	C	A	rs34515238	byCluster;byFrequency;by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001973.2	-1	reviewed	p.V313L	0.994	184	0%	104	32.7%	11	63.6%	benign(0.003)	tolerated(0.45)	neutral(0.012)	NULL
NUCKS1	64710	genome.wustl.edu	37	1	205687486	205687486	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022731.3	-1	validated	p.K218	1.000	182	0%	169	19.5%	77	48%	-	-	-	NULL
SLC26A9	115019	genome.wustl.edu	37	1	205890892	205890892	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134325.2	-1	reviewed	p.G619	0.028	339	0%	232	16.8%	1	0%	-	-	-	HMMPfam_STAS,superfamily_STAS
SLC26A9	115019	genome.wustl.edu	37	1	205890949	205890949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134325.2	-1	reviewed	p.Q600H	1.000	248	0%	161	22.4%	0	-	possibly_damaging(0.716)	tolerated(0.14)	deleterious(0.508)	HMMPfam_STAS,superfamily_STAS
AVPR1B	553	genome.wustl.edu	37	1	206224708	206224708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000707.3	+1	reviewed	p.P90S	1.000	48	0%	34	32.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
AVPR1B	553	genome.wustl.edu	37	1	206225299	206225299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000707.3	+1	reviewed	p.V287M	1.000	108	0%	137	10.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CTSE	1510	genome.wustl.edu	37	1	206331042	206331042	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001910.2	+1	reviewed	p.F350V	0.303	211	0%	115	14.8%	50	50%	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_Asp,superfamily_Pept_Aspartic
CTSE	1510	genome.wustl.edu	37	1	206331102	206331102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001910.2	+1	reviewed	p.L370M	1.000	237	0%	137	12.4%	34	47%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Asp,superfamily_Pept_Aspartic
LGTN	100529141	genome.wustl.edu	37	1	206769141	206769141	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006893.2	-1	reviewed	p.Q479*	1.000	398	0.3%	278	20.1%	32	3.1%	-	-	-	superfamily_eIF1-like
DYRK3	8444	genome.wustl.edu	37	1	206821352	206821352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003582.2	+1	reviewed	p.N270S	1.000	179	0%	130	20%	5	60%	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FAIM3	9214	genome.wustl.edu	37	1	207087191	207087191	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142472.1	-1	validated	p.E96*	0.000	274	0.7%	261	21.8%	18	0%	-	-	-	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PIGR	5284	genome.wustl.edu	37	1	207108075	207108075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002644.3	-1	reviewed	p.K465N	0.002	165	0%	84	25%	11	45.4%	possibly_damaging(0.945)	tolerated(0.37)	neutral(0.409)	HMMPfam_V-set,superfamily_SSF48726
FCAMR	83953	genome.wustl.edu	37	1	207134274	207134274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000324852	-1	known	p.S316N	0.000	333	0%	129	29.5%	0	-	possibly_damaging(0.707)	tolerated(0.05)	deleterious(0.601)	NULL
FCAMR	83953	genome.wustl.edu	37	1	207134440	207134440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000324852	-1	known	p.A261S	0.029	284	0%	105	14.3%	0	-	benign(0.138)	tolerated(0.32)	neutral(0.036)	NULL
PFKFB2	5208	genome.wustl.edu	37	1	207245617	207245617	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006212.2	+1	reviewed	p.S473	1.000	192	0%	62	25.8%	3	33.3%	-	-	-	NULL
C4BPB	725	genome.wustl.edu	37	1	207263787	207263787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000716.3	+1	reviewed	p.A65T	0.000	268	0.4%	112	22.3%	0	-	benign(0.195)	tolerated(0.05)	neutral(0.364)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CD55	1604	genome.wustl.edu	37	1	207498006	207498006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114752.1	+1	reviewed	p.R130H	0.900	179	0%	308	23.4%	125	49.6%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CD55	1604	genome.wustl.edu	37	1	207510151	207510151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114752.1	+1	reviewed	p.P323S	0.002	1041	0.1%	644	11.6%	254	26.3%	benign(0.005)	deleterious(0.04)	neutral(0.349)	NULL
CR2	1380	genome.wustl.edu	37	1	207643189	207643189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001006658.2	+1	reviewed	p.L323F	0.030	319	0%	103	19.4%	0	-	possibly_damaging(0.822)	deleterious(0.01)	deleterious(0.717)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CR1	1378	genome.wustl.edu	37	1	207741276	207741276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000651.4	+1	reviewed	p.P1354S	0.009	562	0%	162	16%	0	-	probably_damaging(0.994)	tolerated(0.2)	deleterious(0.501)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
PLXNA2	5362	genome.wustl.edu	37	1	208212267	208212267	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025179.3	-1	reviewed	p.N1521	1.000	359	0%	273	20.9%	5	20%	-	-	-	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNA2	5362	genome.wustl.edu	37	1	208227844	208227844	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025179.3	-1	reviewed	p.T926	0.988	82	0%	46	26.1%	2	0%	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
LAMB3	3914	genome.wustl.edu	37	1	209788725	209788725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000228.2	-1	reviewed	p.S1137I	0.998	85	0%	50	24%	152	52.6%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
LAMB3	3914	genome.wustl.edu	37	1	209796011	209796011	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000228.2	-1	reviewed	p.E857	0.965	76	0%	80	30%	64	37.5%	-	-	-	NULL
LAMB3	3914	genome.wustl.edu	37	1	209797249	209797249	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000451182	-1	known	p.V565A	0.001	161	0%	158	24.1%	46	45.6%	-	-	-	NULL
LAMB3	3914	genome.wustl.edu	37	1	209811973	209811973	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000228.2	-1	reviewed	p.K68	1.000	111	0%	63	33.3%	29	31%	-	-	-	HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like
HSD11B1	3290	genome.wustl.edu	37	1	209905850	209905850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005525.2	+1	reviewed	p.S196Y	0.016	432	0%	181	16%	5	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains
IRF6	3664	genome.wustl.edu	37	1	209964021	209964021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006147.2	-1	reviewed	p.K293N	0.965	117	0%	79	19%	18	50%	benign(0.009)	deleterious(0.01)	neutral(0.406)	superfamily_SMAD_FHA,HMMPfam_IRF-3
DIEXF	27042	genome.wustl.edu	37	1	210004293	210004293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014388.5	+1	validated	p.S98I	0.000	296	0.3%	102	22.5%	9	33.3%	benign(0.004)	tolerated(0.17)	neutral(0.059)	NULL
DIEXF	27042	genome.wustl.edu	37	1	210006696	210006696	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014388.5	+1	validated	p.A185	0.000	274	0%	108	21.3%	10	10%	-	-	-	NULL
DIEXF	27042	genome.wustl.edu	37	1	210008500	210008500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014388.5	+1	validated	p.E215K	0.005	316	0.3%	123	15.4%	13	30.7%	benign(0.011)	tolerated(0.68)	neutral(0.003)	NULL
DIEXF	27042	genome.wustl.edu	37	1	210012460	210012460	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000457820	+1	known	p.T104I	1.000	359	0%	135	13.3%	18	11.1%	-	-	-	HMMPfam_DUF1253
DIEXF	27042	genome.wustl.edu	37	1	210015637	210015637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014388.5	+1	validated	p.P505S	1.000	305	0%	97	22.7%	20	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1253
SERTAD4	56256	genome.wustl.edu	37	1	210411310	210411310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019605.3	+1	validated	p.T2N	1.000	69	0%	98	22.4%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
RCOR3	55758	genome.wustl.edu	37	1	211451540	211451540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136223.1	+1	validated	p.R200C	1.000	326	0%	182	23.6%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DTL	51514	genome.wustl.edu	37	1	212251570	212251570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016448.2	+1	validated	p.T364M	1.000	385	0%	193	25.9%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DTL	51514	genome.wustl.edu	37	1	212254014	212254014	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016448.2	+1	validated	p.E395*	0.968	419	0%	187	11.8%	12	0%	-	-	-	superfamily_WD40 repeat-like
LOC100287008	100287008	genome.wustl.edu	37	1	212619249	212619249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342183.1	-1	model	p.D26N	0.558	244	0%	185	27.6%	334	37.4%	-	-	-	NULL
FAM71A	149647	genome.wustl.edu	37	1	212798269	212798269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153606.3	+1	validated	p.S17N	0.000	171	0%	98	23.5%	0	-	benign(0.098)	deleterious(0.05)	neutral(0.353)	NULL
FAM71A	149647	genome.wustl.edu	37	1	212799380	212799380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153606.3	+1	validated	p.M387I	0.000	109	0%	67	17.9%	0	-	benign(0.002)	tolerated(0.41)	neutral(0.015)	NULL
VASH2	79805	genome.wustl.edu	37	1	213147326	213147326	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024749.3	+1	validated	p.P259	0.096	140	0%	85	14.1%	1	0%	-	-	-	NULL
RPS6KC1	26750	genome.wustl.edu	37	1	213244380	213244380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012424.3	+1	validated	p.Q46H	1.000	244	0%	192	25%	1	100%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
PROX1	5629	genome.wustl.edu	37	1	214170027	214170027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002763.3	+1	provisional	p.S50Y	1.000	345	0%	263	23.2%	0	-	possibly_damaging(0.911)	deleterious(0.02)	deleterious(0.746)	HMMPfam_Prox1
CENPF	1063	genome.wustl.edu	37	1	214792512	214792512	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016343.3	+1	reviewed	p.E174	1.000	159	0%	91	22%	1	0%	-	-	-	HMMPfam_Cenp-F_N
KCTD3	51133	genome.wustl.edu	37	1	215793560	215793560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016121.3	+1	validated	p.A683V	0.538	265	0%	128	30.5%	12	50%	benign(0.006)	deleterious(0)	neutral(0.445)	NULL
USH2A	7399	genome.wustl.edu	37	1	215807888	215807888	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206933.2	-1	reviewed	p.E5070	0.826	353	0%	217	17.1%	0	-	-	-	-	NULL
USH2A	7399	genome.wustl.edu	37	1	215847926	215847926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206933.2	-1	reviewed	p.L4443M	1.000	255	0%	43	16.3%	0	-	benign(0.115)	tolerated(0.12)	neutral(0.270)	superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216019262	216019262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206933.2	-1	reviewed	p.L2987I	1.000	295	0.3%	115	15.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216019296	216019296	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206933.2	-1	reviewed	p.I2975	0.058	292	0%	115	17.4%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216172296	216172296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206933.2	-1	reviewed	p.T2197I	0.998	461	0%	117	22.2%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216256857	216256857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206933.2	-1	reviewed	p.D1747N	1.000	295	0%	95	10.5%	0	-	possibly_damaging(0.706)	tolerated(0.14)	deleterious(0.504)	HMMSmart_SM00282,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
USH2A	7399	genome.wustl.edu	37	1	216348728	216348728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206933.2	-1	reviewed	p.P1498L	0.996	470	0%	97	21.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases
USH2A	7399	genome.wustl.edu	37	1	216424308	216424308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206933.2	-1	reviewed	p.V702L	0.992	392	0%	75	21.3%	0	-	possibly_damaging(0.94)	tolerated(0.24)	neutral(0.422)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
LYPLAL1	127018	genome.wustl.edu	37	1	219347294	219347294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138794.3	+1	validated	p.S21I	1.000	74	0%	69	21.7%	20	40%	possibly_damaging(0.789)	deleterious(0.01)	deleterious(0.702)	HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases
EPRS	2058	genome.wustl.edu	37	1	220160638	220160638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004446.2	-1	reviewed	p.D962Y	1.000	355	0.3%	138	25.4%	39	38.4%	possibly_damaging(0.776)	deleterious(0.03)	deleterious(0.654)	NULL
BPNT1	10380	genome.wustl.edu	37	1	220236283	220236283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006085.4	-1	validated	p.A163V	1.000	132	0%	57	26.3%	32	43.7%	benign(0.002)	tolerated(0.09)	neutral(0.296)	HMMPfam_Inositol_P,superfamily_Carbohydrate phosphatase
RAB3GAP2	25782	genome.wustl.edu	37	1	220356240	220356240	+	Nonsense_Mutation	SNP	C	C	A	rs116733626	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012414.3	-1	reviewed	p.E678*	0.999	325	0%	167	21%	1	0%	-	-	-	NULL
MARK1	4139	genome.wustl.edu	37	1	220805634	220805634	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018650.3	+1	validated	p.L367	0.997	171	0%	66	10.6%	1	0%	-	-	-	HMMPfam_UBA,HMMSmart_SM00165
HLX	3142	genome.wustl.edu	37	1	221053711	221053711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021958.3	+1	validated	p.S171N	1.000	40	0%	13	38.5%	2	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
HHIPL2	79802	genome.wustl.edu	37	1	222717353	222717353	+	Missense_Mutation	SNP	C	C	T	rs182677675	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024746.3	-1	validated	p.R167H	0.063	105	0%	56	21.4%	1	0%	benign(0.002)	tolerated(0.5)	neutral(0.010)	NULL
MIA3	375056	genome.wustl.edu	37	1	222803373	222803373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198551.2	+1	validated	p.Q937H	0.007	201	0%	117	23.9%	12	33.3%	benign(0.013)	tolerated(0.28)	neutral(0.032)	NULL
MIA3	375056	genome.wustl.edu	37	1	222828136	222828136	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198551.2	+1	validated	e18+1	1.000	201	0%	100	24%	17	100%	-	-	-	-
DISP1	84976	genome.wustl.edu	37	1	223177480	223177480	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032890.2	+1	reviewed	p.F914C	1.000	169	0%	97	14.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Patched
DISP1	84976	genome.wustl.edu	37	1	223178105	223178105	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032890.2	+1	reviewed	p.F1122	0.907	135	1.5%	88	19.3%	12	33.3%	-	-	-	superfamily_SSF82866
CAPN8	388743	genome.wustl.edu	37	1	223853219	223853219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143962.1	-1	validated	p.V44I	0.770	146	0%	61	24.6%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	HMMSmart_SM00230,superfamily_Cysteine proteinases
TP53BP2	7159	genome.wustl.edu	37	1	223983834	223983834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031685.2	-1	reviewed	p.E803K	0.848	404	0.2%	148	20.3%	19	36.8%	possibly_damaging(0.902)	tolerated(0.14)	deleterious(0.607)	NULL
FBXO28	23219	genome.wustl.edu	37	1	224321810	224321810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015176.2	+1	validated	p.R138C	1.000	236	0%	120	10.8%	10	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
NVL	4931	genome.wustl.edu	37	1	224505454	224505454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002533.2	-1	validated	p.T76A	0.004	780	0.1%	407	19.2%	9	44.4%	benign(0.007)	tolerated(0.74)	neutral(0.002)	NULL
WDR26	80232	genome.wustl.edu	37	1	224588661	224588661	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025160.6	-1	reviewed	p.F323	1.000	145	0%	60	15%	60	40%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
DNAH14	127602	genome.wustl.edu	37	1	225156512	225156512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001373.1	+1	validated	p.E235K	0.275	342	0%	142	16.9%	7	42.8%	possibly_damaging(0.692)	tolerated(0.85)	neutral(0.248)	NULL
DNAH14	127602	genome.wustl.edu	37	1	225521016	225521016	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000448170	+1	known	p.S397P	0.000	193	0%	127	22%	0	-	-	-	-	NULL
DNAH14	127602	genome.wustl.edu	37	1	225562394	225562394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001373.1	+1	validated	p.A4015V	0.312	154	0%	211	22.7%	0	-	benign(0.14)	deleterious(0.01)	neutral(0.418)	HMMPfam_Dynein_heavy
DNAH14	127602	genome.wustl.edu	37	1	225567883	225567883	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001373.1	+1	validated	p.L4145	0.357	307	0%	283	23%	0	-	-	-	-	HMMPfam_Dynein_heavy
ENAH	55740	genome.wustl.edu	37	1	225755019	225755019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008493.1	-1	validated	p.V35F	1.000	445	0%	190	24.2%	7	28.5%	unknown(0)	deleterious(0)	-	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like
EPHX1	2052	genome.wustl.edu	37	1	226032856	226032856	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000120.3	+1	reviewed	p.V392	0.004	129	0%	125	20.8%	251	41.8%	-	-	-	HMMPfam_Abhydrolase_1,superfamily_SSF53474
EPHX1	2052	genome.wustl.edu	37	1	226032943	226032943	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000120.3	+1	reviewed	p.I421	0.388	104	0%	104	22.1%	179	33.5%	-	-	-	superfamily_SSF53474
TMEM63A	9725	genome.wustl.edu	37	1	226036614	226036614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014698.2	-1	validated	p.S724I	1.000	184	0%	115	19.1%	34	41.1%	possibly_damaging(0.859)	deleterious(0.01)	deleterious(0.738)	NULL
TMEM63A	9725	genome.wustl.edu	37	1	226040394	226040394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014698.2	-1	validated	p.S625I	1.000	127	0%	97	27.8%	51	39.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF221
TMEM63A	9725	genome.wustl.edu	37	1	226050266	226050266	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014698.2	-1	validated	p.E280	1.000	333	0%	235	24.3%	17	35.2%	-	-	-	superfamily_SSF54928
LEFTY1	10637	genome.wustl.edu	37	1	226076616	226076616	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020997.2	-1	reviewed	p.L51	0.077	19	0%	29	27.6%	1	100%	-	-	-	HMMPfam_TGFb_propeptide
LEFTY2	7044	genome.wustl.edu	37	1	226128638	226128638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003240.3	-1	reviewed	p.S68N	0.999	36	0%	52	21.2%	1	0%	possibly_damaging(0.455)	tolerated(1)	neutral(0.149)	HMMPfam_TGFb_propeptide
C1orf55	163859	genome.wustl.edu	37	1	226173193	226173193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152608.3	-1	validated	p.A389V	1.000	164	0%	140	22.9%	9	33.3%	possibly_damaging(0.943)	deleterious(0.03)	deleterious(0.752)	NULL
C1orf55	163859	genome.wustl.edu	37	1	226180124	226180124	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152608.3	-1	validated	p.E165	1.000	111	0%	86	25.6%	8	50%	-	-	-	NULL
C1orf55	163859	genome.wustl.edu	37	1	226180157	226180157	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152608.3	-1	validated	p.P154	0.007	98	0%	101	24.8%	19	36.8%	-	-	-	NULL
H3F3A	3020	genome.wustl.edu	37	1	226259144	226259144	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002107.3	+1	reviewed	p.I125	1.000	189	0%	167	23.4%	1294	36.7%	-	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
ACBD3	64746	genome.wustl.edu	37	1	226353609	226353609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022735.3	-1	reviewed	p.D127Y	1.000	411	0%	219	13.2%	8	25%	unknown(0)	deleterious(0.01)	-	HMMPfam_ACBP,superfamily_Acyl-CoA binding protein
LIN9	286826	genome.wustl.edu	37	1	226420276	226420276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173083.2	-1	provisional	p.A535T	1.000	345	0%	300	19%	11	54.5%	probably_damaging(0.955)	tolerated(0.51)	neutral(0.408)	NULL
ITPKB	3707	genome.wustl.edu	37	1	226923525	226923525	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002221.3	-1	reviewed	p.P545	0.000	60	0%	60	15%	15	13.3%	-	-	-	NULL
PSEN2	5664	genome.wustl.edu	37	1	227073357	227073357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000447.2	+1	reviewed	p.L159I	1.000	110	0%	102	23.5%	21	28.5%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Presenilin,HMMSmart_SM00730
PSEN2	5664	genome.wustl.edu	37	1	227079056	227079056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000447.2	+1	reviewed	p.E322K	0.991	19	0%	32	18.8%	35	51.4%	benign(0.146)	tolerated(0.3)	neutral(0.041)	HMMPfam_Presenilin,HMMSmart_SM00730
ADCK3	56997	genome.wustl.edu	37	1	227174166	227174166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020247.4	+1	reviewed	p.A558T	1.000	138	0%	140	19.3%	44	43.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SNAP47	116841	genome.wustl.edu	37	1	227935545	227935545	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000426344	+1	known	p.H73Y	0.782	71	0%	55	30.9%	35	37.1%	-	-	-	NULL
WNT3A	89780	genome.wustl.edu	37	1	228210491	228210491	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033131.2	+1	reviewed	p.S65	0.998	40	0%	65	32.3%	0	-	-	-	-	HMMPfam_wnt,HMMSmart_WNT1
MRPL55	128308	genome.wustl.edu	37	1	228295393	228295393	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181462.2	-1	reviewed	p.Y104	0.976	33	0%	58	22.4%	200	38%	-	-	-	HMMPfam_Mitoc_L55
GUK1	2987	genome.wustl.edu	37	1	228336153	228336153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000858.5	+1	validated	p.S186Y	0.001	52	0%	69	21.7%	588	36.9%	possibly_damaging(0.523)	tolerated(1)	neutral(0.176)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
OBSCN	84033	genome.wustl.edu	37	1	228402113	228402113	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098623.1	+1	reviewed	p.T499	0.001	17	0%	17	23.5%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228434423	228434423	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098623.1	+1	reviewed	p.Q1318*	1.000	101	0%	76	15.8%	1	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228466988	228466988	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098623.1	+1	reviewed	p.L2413	0.149	52	0%	44	22.7%	0	-	-	-	-	superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228468350	228468350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098623.1	+1	reviewed	p.V2684M	0.000	34	0%	54	25.9%	0	-	possibly_damaging(0.448)	tolerated(0.12)	neutral(0.407)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228491383	228491383	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000366707	+1	known	p.P1272	0.004	129	0%	91	11%	0	-	-	-	-	HMMSmart_SM00406,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228522595	228522595	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000441106	+1	known	p.L5I	0.936	49	0%	53	35.8%	2	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228528901	228528901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098623.1	+1	reviewed	p.R5935W	0.740	39	0%	42	23.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
HIST3H2A	92815	genome.wustl.edu	37	1	228645288	228645288	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033445.2	-1	reviewed	p.T77	0.965	110	0%	107	37.4%	23	0%	-	-	-	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold
LOC100288545	100288545	genome.wustl.edu	37	1	229568451	229568451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342173.1	+1	model	p.L109F	1.000	122	0%	150	28%	0	-	-	-	-	NULL
URB2	9816	genome.wustl.edu	37	1	229771368	229771368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014777.2	+1	provisional	p.K336N	0.021	79	0%	46	10.9%	6	16.6%	benign(0.072)	tolerated(0.48)	neutral(0.015)	NULL
URB2	9816	genome.wustl.edu	37	1	229771446	229771446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014777.2	+1	provisional	p.Q362H	1.000	82	0%	57	15.8%	2	0%	possibly_damaging(0.922)	tolerated(0.08)	deleterious(0.671)	NULL
URB2	9816	genome.wustl.edu	37	1	229773826	229773826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014777.2	+1	provisional	p.G1156S	0.000	347	0%	290	21.4%	6	33.3%	benign(0)	tolerated(1)	-	NULL
URB2	9816	genome.wustl.edu	37	1	229783376	229783376	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014777.2	+1	provisional	p.H1342	0.784	54	0%	47	19.1%	16	37.5%	-	-	-	HMMPfam_Urb2
URB2	9816	genome.wustl.edu	37	1	229794962	229794962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014777.2	+1	provisional	p.R1498I	0.527	156	0%	71	23.9%	24	41.6%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMPfam_Urb2
CAPN9	10753	genome.wustl.edu	37	1	230910305	230910305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006615.2	+1	reviewed	p.P294L	0.004	454	0.4%	182	23.1%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
TRIM67	440730	genome.wustl.edu	37	1	231337170	231337170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004342.3	+1	validated	p.P481S	1.000	180	0%	110	30%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
TRIM67	440730	genome.wustl.edu	37	1	231342475	231342475	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004342.3	+1	validated	p.K586N	0.994	243	0%	165	10.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
C1orf131	128061	genome.wustl.edu	37	1	231374623	231374623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152379.2	-1	validated	p.D144Y	0.001	233	0%	257	20.2%	19	47.3%	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
EXOC8	149371	genome.wustl.edu	37	1	231473264	231473264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175876.3	-1	validated	p.E76D	1.000	24	0%	28	21.4%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Vps51
TSNAX	7257	genome.wustl.edu	37	1	231700395	231700395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005999.2	+1	reviewed	p.V206A	1.000	562	0%	319	21%	29	37.9%	possibly_damaging(0.848)	tolerated(0.05)	deleterious(0.671)	HMMPfam_Translin,superfamily_Translin
DISC1	27185	genome.wustl.edu	37	1	231829773	231829773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018662.2	+1	reviewed	p.S90L	0.000	57	0%	46	15.2%	3	0%	benign(0.002)	tolerated(0.37)	neutral(0.019)	NULL
DISC1	27185	genome.wustl.edu	37	1	231829852	231829852	+	Silent	SNP	G	G	A	rs189101828	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018662.2	+1	reviewed	p.A116	0.000	62	3.2%	57	24.6%	0	-	-	-	-	NULL
DISC1	27185	genome.wustl.edu	37	1	231830233	231830233	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018662.2	+1	reviewed	p.Q243	0.001	50	0%	38	23.7%	2	50%	-	-	-	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232561501	232561501	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020808.3	-1	validated	p.S1488	0.075	185	0%	141	24.8%	6	33.3%	-	-	-	NULL
PCNXL2	80003	genome.wustl.edu	37	1	233190117	233190117	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000429988	-1	known	p.R217*	0.766	174	0%	59	30.5%	2	50%	-	-	-	NULL
KIAA1804	84451	genome.wustl.edu	37	1	233497897	233497897	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032435.2	+1	validated	p.R470	0.001	102	0%	38	31.6%	8	50%	-	-	-	NULL
C1orf31	388753	genome.wustl.edu	37	1	234519528	234519528	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012985.1	+1	predicted	p.G114	0.711	190	0%	147	23.8%	142	40.8%	-	-	-	NULL
TARBP1	6894	genome.wustl.edu	37	1	234527422	234527422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005646.3	-1	reviewed	p.Q1589H	0.990	132	0%	81	27.2%	34	50%	benign(0.046)	tolerated(0.54)	neutral(0.010)	HMMPfam_SpoU_methylase,superfamily_SSF75217
TARBP1	6894	genome.wustl.edu	37	1	234553954	234553954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005646.3	-1	reviewed	p.R1194M	1.000	50	0%	88	21.6%	5	40%	benign(0.048)	deleterious(0.02)	neutral(0.386)	superfamily_ARM-type_fold
RBM34	23029	genome.wustl.edu	37	1	235295129	235295129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015014.2	-1	validated	p.P393S	0.663	385	0%	468	22%	107	47.6%	benign(0)	tolerated(0.8)	neutral(0.001)	NULL
ARID4B	51742	genome.wustl.edu	37	1	235345569	235345569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016374.5	-1	reviewed	p.L889I	1.000	183	0%	149	20.8%	7	14.2%	probably_damaging(0.982)	tolerated(0.26)	neutral(0.461)	NULL
LYST	1130	genome.wustl.edu	37	1	235918881	235918881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000081.2	-1	reviewed	p.F2376L	1.000	242	0%	66	18.2%	0	-	probably_damaging(0.999)	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235993653	235993653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000081.2	-1	reviewed	p.A22V	1.000	145	0%	69	20.3%	14	7.1%	probably_damaging(1)	-	-	NULL
NID1	4811	genome.wustl.edu	37	1	236143210	236143210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002508.2	-1	reviewed	p.P1141S	0.928	112	0%	66	16.7%	13	0%	benign(0)	tolerated(0.93)	-	HMMSmart_SM00135,superfamily_YWTD domain
NID1	4811	genome.wustl.edu	37	1	236187506	236187506	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002508.2	-1	reviewed	p.S664	0.999	56	0%	49	32.7%	9	11.1%	-	-	-	HMMSmart_SM00682
GPR137B	7107	genome.wustl.edu	37	1	236343287	236343287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003272.3	+1	validated	p.V266I	0.994	358	0%	138	21%	40	25%	benign(0.002)	tolerated(0.62)	neutral(0.004)	NULL
LGALS8	3964	genome.wustl.edu	37	1	236702250	236702250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006499.3	+1	reviewed	p.R69H	0.997	276	0%	201	23.4%	28	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
HEATR1	55127	genome.wustl.edu	37	1	236720519	236720519	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018072.4	-1	validated	p.P1777	0.992	78	0%	35	25.7%	15	13.3%	-	-	-	superfamily_ARM-type_fold
HEATR1	55127	genome.wustl.edu	37	1	236723039	236723039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018072.4	-1	validated	p.S1582N	1.000	134	0.7%	62	17.7%	9	44.4%	benign(0.004)	tolerated(0.58)	neutral(0.005)	superfamily_ARM-type_fold
HEATR1	55127	genome.wustl.edu	37	1	236730015	236730015	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018072.4	-1	validated	p.W1413*	1.000	140	0%	59	23.7%	7	0%	-	-	-	superfamily_ARM-type_fold
HEATR1	55127	genome.wustl.edu	37	1	236734734	236734734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018072.4	-1	validated	p.V1289I	1.000	234	0%	123	26.8%	4	50%	possibly_damaging(0.868)	deleterious(0.01)	deleterious(0.743)	superfamily_ARM-type_fold
ACTN2	88	genome.wustl.edu	37	1	236894587	236894587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001103.2	+1	reviewed	p.D224Y	1.000	425	0%	237	21.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
MTR	4548	genome.wustl.edu	37	1	236976058	236976058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000254.2	+1	reviewed	p.A175T	1.000	595	0.2%	231	21.6%	3	66.6%	unknown(0)	tolerated(0.07)	-	HMMPfam_S-methyl_trans,superfamily_Homocysteine S-methyltransferase
RYR2	6262	genome.wustl.edu	37	1	237604770	237604770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001035.2	+1	reviewed	p.S386Y	0.138	289	0.3%	86	20.9%	0	-	possibly_damaging(0.928)	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815)
RYR2	6262	genome.wustl.edu	37	1	237659916	237659916	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001035.2	+1	reviewed	p.E689D	0.999	232	0%	110	13.6%	0	-	possibly_damaging(0.666)	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR2	6262	genome.wustl.edu	37	1	237666766	237666766	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001035.2	+1	reviewed	p.T858	0.832	131	0%	56	12.5%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237777476	237777476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001035.2	+1	reviewed	p.P1683H	0.875	142	0%	61	16.4%	0	-	benign(0)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237778076	237778076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001035.2	+1	reviewed	p.A1883V	0.342	79	0%	44	20.5%	0	-	benign(0)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237787145	237787145	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001035.2	+1	reviewed	p.F1999	1.000	503	0%	198	22.7%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237801768	237801768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001035.2	+1	reviewed	p.L2302I	1.000	593	0%	357	26.3%	1	0%	probably_damaging(0.999)	-	-	HMMPfam_RYDR_ITPR
RYR2	6262	genome.wustl.edu	37	1	237813226	237813226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001035.2	+1	reviewed	p.C2521Y	1.000	261	0%	182	25.8%	0	-	probably_damaging(0.994)	-	-	NULL
CHRM3	1131	genome.wustl.edu	37	1	240070949	240070949	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000740.2	+1	reviewed	p.W66*	1.000	231	0.4%	91	22%	0	-	-	-	-	superfamily_SSF81321
FMN2	56776	genome.wustl.edu	37	1	240370405	240370405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020066.4	+1	validated	p.G765W	0.000	60	0%	48	27.1%	0	-	unknown(0)	deleterious(0.02)	-	NULL
FMN2	56776	genome.wustl.edu	37	1	240601433	240601433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020066.4	+1	validated	p.F1661L	1.000	330	0%	150	21.3%	0	-	possibly_damaging(0.897)	tolerated(0.08)	deleterious(0.654)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
RGS7	6000	genome.wustl.edu	37	1	240977029	240977029	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002924.4	-1	validated	e12-1	1.000	230	0%	188	17.6%	0	-	-	-	-	-
KMO	8564	genome.wustl.edu	37	1	241724002	241724002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003679.3	+1	validated	p.N133K	1.000	383	0%	178	23%	3	0%	benign(0.004)	tolerated(0.45)	neutral(0.012)	superfamily_FAD/NAD(P)-binding domain
EXO1	9156	genome.wustl.edu	37	1	242021976	242021976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006027.4	+1	reviewed	p.A238S	1.000	262	0%	258	18.2%	4	25%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMSmart_SM00279,superfamily_5' to 3' exonuclease C-terminal subdomain
EXO1	9156	genome.wustl.edu	37	1	242042191	242042191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006027.4	+1	reviewed	p.D552G	0.000	346	0%	141	18.4%	9	22.2%	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
PLD5	200150	genome.wustl.edu	37	1	242287936	242287936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152666.1	-1	provisional	p.C164Y	1.000	382	0%	155	22.6%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_PLD_envelope,superfamily_SSF56024
PLD5	200150	genome.wustl.edu	37	1	242451672	242451672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152666.1	-1	provisional	p.A71S	1.000	398	0%	199	11.6%	0	-	benign(0.091)	tolerated(0.35)	neutral(0.027)	superfamily_SSF56024
CEP170	9859	genome.wustl.edu	37	1	243327729	243327729	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000336415	-1	known	p.R1142*	0.995	226	0.9%	111	12.6%	2	0%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
CEP170	9859	genome.wustl.edu	37	1	243332946	243332946	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000336415	-1	known	p.L573P	0.934	256	0%	210	20.5%	2	0%	-	-	-	NULL
CEP170	9859	genome.wustl.edu	37	1	243362493	243362493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014812.2	-1	reviewed	p.I167T	0.962	368	0%	178	10.7%	1	0%	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
CEP170	9859	genome.wustl.edu	37	1	243364137	243364137	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000272037	-1	known	e4-2	1.000	211	0%	129	24.8%	1	100%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	-
SDCCAG8	10806	genome.wustl.edu	37	1	243449666	243449666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006642.2	+1	validated	p.E171D	0.860	249	0%	132	15.9%	10	40%	benign(0.134)	tolerated(0.5)	neutral(0.021)	NULL
AKT3	10000	genome.wustl.edu	37	1	243708871	243708871	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005465.3	-1	reviewed	p.E398*	1.000	394	0%	193	19.7%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C1orf100	200159	genome.wustl.edu	37	1	244552334	244552334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012970.1	+1	predicted	p.R136I	0.001	312	0.3%	156	18.6%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
ADSS	159	genome.wustl.edu	37	1	244574725	244574725	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001126.2	-1	reviewed	p.V394	1.000	322	0%	147	21.8%	88	39.7%	-	-	-	HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,superfamily_P-loop containing nucleoside triphosphate hydrolases
C1orf101	257044	genome.wustl.edu	37	1	244735844	244735844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130957.1	+1	validated	p.S574R	0.805	361	0%	160	15%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C1orf101	257044	genome.wustl.edu	37	1	244803348	244803348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130957.1	+1	validated	p.L941I	0.058	617	0%	493	11.2%	2	0%	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	NULL
HNRNPU	3192	genome.wustl.edu	37	1	245020049	245020049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031844.2	-1	reviewed	p.R575Q	1.000	161	0%	195	27.7%	399	43.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF26B	55083	genome.wustl.edu	37	1	245765916	245765916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018012.3	+1	provisional	p.R463Q	0.660	181	0%	156	19.9%	1	100%	probably_damaging(0.997)	tolerated(0.62)	deleterious(0.470)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF26B	55083	genome.wustl.edu	37	1	245766055	245766055	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018012.3	+1	provisional	p.F509	0.945	264	0%	236	25.4%	2	0%	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF26B	55083	genome.wustl.edu	37	1	245770973	245770973	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018012.3	+1	provisional	p.T526	0.005	139	0%	134	23.9%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
CNST	163882	genome.wustl.edu	37	1	246811240	246811240	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152609.2	+1	validated	p.L579	0.999	105	0%	84	16.7%	10	30%	-	-	-	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247013475	247013475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015446.4	-1	validated	p.P1945S	0.000	342	0%	170	20.6%	26	26.9%	benign(0)	tolerated(1)	-	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247021041	247021041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015446.4	-1	validated	p.P1403L	0.000	288	0%	222	19.4%	7	42.8%	benign(0.071)	tolerated(0.08)	neutral(0.305)	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247058038	247058038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015446.4	-1	validated	p.S576Y	1.000	307	0%	173	24.9%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247068848	247068848	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015446.4	-1	validated	p.Q292	0.997	272	0%	129	22.5%	3	0%	-	-	-	NULL
ZNF670	93474	genome.wustl.edu	37	1	247201035	247201035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033213.2	-1	validated	p.L296I	0.005	372	0%	418	29.7%	6	66.6%	benign(0.096)	tolerated(0.05)	neutral(0.352)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF670	93474	genome.wustl.edu	37	1	247201249	247201249	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033213.2	-1	validated	p.P224	0.833	275	0%	333	30.6%	4	75%	-	-	-	superfamily_SSF57667
ZNF670	93474	genome.wustl.edu	37	1	247202719	247202719	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033213.2	-1	validated	p.S42P	0.628	361	0%	279	22.9%	3	100%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
NLRP3	114548	genome.wustl.edu	37	1	247611774	247611774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001079821.2	+1	reviewed	p.E1027K	0.017	233	0%	222	18%	2	0%	possibly_damaging(0.9)	tolerated(0.25)	neutral(0.393)	superfamily_SSF52047
TRIM58	25893	genome.wustl.edu	37	1	248028214	248028214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015431.3	+1	validated	p.R242C	0.002	23	0%	31	19.4%	0	-	benign(0.041)	deleterious(0.01)	neutral(0.408)	NULL
OR2T8	343172	genome.wustl.edu	37	1	248084325	248084325	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005522.1	+1	validated	p.E2D	0.005	388	0%	206	22.3%	0	-	benign(0.004)	tolerated(0.12)	neutral(0.261)	superfamily_SSF81321
OR2AK2	391191	genome.wustl.edu	37	1	248129590	248129590	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004491.1	+1	provisional	p.L319	0.000	353	0%	133	14.3%	0	-	-	-	-	superfamily_SSF81321
OR2L3	391192	genome.wustl.edu	37	1	248224556	248224556	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004687.1	+1	provisional	p.T191	0.000	1023	0%	468	18.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2L13	284521	genome.wustl.edu	37	1	248262920	248262920	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175911.2	+1	provisional	p.A81	0.000	383	0%	167	25.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2T12	127064	genome.wustl.edu	37	1	248458789	248458789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004692.1	-1	provisional	p.A31V	0.000	428	0.2%	207	13%	0	-	benign(0)	tolerated(0.85)	neutral(0.001)	superfamily_SSF81321
OR2T2	401992	genome.wustl.edu	37	1	248616776	248616776	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004136.1	+1	provisional	p.V226	0.000	574	0%	138	22.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T3	343173	genome.wustl.edu	37	1	248637162	248637162	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005495.1	+1	provisional	p.F171I	0.001	455	0%	103	12.6%	0	-	probably_damaging(0.973)	tolerated(0.11)	deleterious(0.686)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T3	343173	genome.wustl.edu	37	1	248637502	248637502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005495.1	+1	provisional	p.T284I	0.390	555	0%	174	12.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T10	127069	genome.wustl.edu	37	1	248756465	248756465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004693.1	-1	provisional	p.C202Y	0.005	218	0%	229	23.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF692	55657	genome.wustl.edu	37	1	249151512	249151512	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136036.1	-1	provisional	p.E137	0.665	218	0.5%	220	22.7%	10	30%	-	-	-	NULL
PGBD2	267002	genome.wustl.edu	37	1	249212090	249212090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170725.2	+1	validated	p.R436H	0.000	159	0.6%	98	20.4%	7	42.8%	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
SH3YL1	26751	genome.wustl.edu	37	2	233195	233195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015677.2	-1	validated	p.A51T	0.826	179	0%	180	19.4%	23	21.7%	probably_damaging(0.969)	tolerated(0.09)	deleterious(0.708)	HMMPfam_DUF500
SNTG2	54221	genome.wustl.edu	37	2	1161317	1161317	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018968.3	+1	reviewed	p.P165	0.677	182	0%	128	18%	0	-	-	-	-	superfamily_PDZ domain-like
PXDN	7837	genome.wustl.edu	37	2	1638058	1638058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012293.1	-1	validated	p.P1453H	0.993	45	0%	52	13.5%	9	11.1%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1
PXDN	7837	genome.wustl.edu	37	2	1647349	1647349	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012293.1	-1	validated	e19-1	1.000	46	0%	54	16.7%	0	-	-	-	-	-
PXDN	7837	genome.wustl.edu	37	2	1652066	1652066	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012293.1	-1	validated	p.G1162	1.000	71	0%	70	31.4%	3	0%	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
PXDN	7837	genome.wustl.edu	37	2	1652350	1652350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012293.1	-1	validated	p.A1068T	1.000	72	1.4%	83	28.9%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
PXDN	7837	genome.wustl.edu	37	2	1657454	1657454	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012293.1	-1	validated	p.Q684*	1.000	228	0%	196	15.3%	1	0%	-	-	-	NULL
PXDN	7837	genome.wustl.edu	37	2	1664726	1664726	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000433670	-1	known	p.T584M	0.005	240	0%	228	12.3%	7	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MYT1L	23040	genome.wustl.edu	37	2	1844538	1844538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015025.2	-1	validated	p.P949L	1.000	917	0%	836	22%	0	-	probably_damaging(1)	tolerated(0.42)	deleterious(0.514)	HMMPfam_zf-C2HC,superfamily_SSF103637
MYT1L	23040	genome.wustl.edu	37	2	1895992	1895992	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015025.2	-1	validated	p.S698	1.000	27	0%	16	25%	0	-	-	-	-	HMMPfam_MYT1
MYT1L	23040	genome.wustl.edu	37	2	1946848	1946848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015025.2	-1	validated	p.E137D	0.997	686	0.1%	456	12.7%	0	-	unknown(0)	tolerated(0.57)	-	NULL
TRAPPC12	51112	genome.wustl.edu	37	2	3391890	3391890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016030.5	+1	validated	p.R166C	0.006	6	0.000	10	0.400	3	66.6%	possibly_damaging(0.848)	tolerated(0.08)	deleterious(0.625)	NULL
TRAPPC12	51112	genome.wustl.edu	37	2	3483003	3483003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016030.5	+1	validated	p.A660D	1.000	80	0%	67	17.9%	122	31.9%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
COLEC11	78989	genome.wustl.edu	37	2	3652010	3652010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024027.3	+1	validated	p.P27L	0.535	187	0%	207	24.2%	0	-	benign(0.012)	tolerated(0.18)	neutral(0.057)	NULL
ALLC	55821	genome.wustl.edu	37	2	3743930	3743930	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018436.3	+1	validated	p.I245L	0.000	320	0%	392	21.4%	0	-	benign(0.006)	deleterious(0.02)	neutral(0.383)	superfamily_Gal_bind_like,HMMPfam_Allantoicase
SOX11	6664	genome.wustl.edu	37	2	5833144	5833144	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003108.3	+1	reviewed	p.P97	1.000	31	0%	48	25%	0	-	-	-	-	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
CMPK2	129607	genome.wustl.edu	37	2	6991696	6991696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207315.2	-1	validated	p.L371I	0.990	238	0%	132	21.2%	17	41.1%	possibly_damaging(0.537)	tolerated(0.08)	deleterious(0.481)	HMMPfam_Thymidylate_kin,superfamily_P-loop containing nucleoside triphosphate hydrolases
CMPK2	129607	genome.wustl.edu	37	2	7003693	7003693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207315.2	-1	validated	p.P231H	1.000	204	0%	313	21.7%	7	28.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RNF144A	9781	genome.wustl.edu	37	2	7154680	7154680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014746.3	+1	reviewed	p.Q77H	1.000	253	0%	164	25.6%	3	33.3%	possibly_damaging(0.716)	tolerated(0.07)	deleterious(0.578)	NULL
KIDINS220	57498	genome.wustl.edu	37	2	8934087	8934087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020738.2	-1	validated	p.R377C	1.000	262	0%	172	26.2%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ASAP2	8853	genome.wustl.edu	37	2	9463365	9463365	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003887.2	+1	reviewed	p.L196	1.000	78	0%	46	28.3%	8	62.5%	-	-	-	NULL
ASAP2	8853	genome.wustl.edu	37	2	9498962	9498962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003887.2	+1	reviewed	p.H469N	1.000	250	0%	112	14.3%	7	42.8%	possibly_damaging(0.629)	deleterious(0)	deleterious(0.664)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
ITGB1BP1	9270	genome.wustl.edu	37	2	9548306	9548306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004763.3	-1	reviewed	p.P106L	0.584	152	0%	110	24.5%	69	30.4%	benign(0)	tolerated(0.43)	neutral(0.013)	HMMSmart_SM00462,HMMPfam_ICAP-1_inte_bdg
CPSF3	51692	genome.wustl.edu	37	2	9580721	9580721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016207.2	+1	provisional	p.A288T	1.000	375	0.3%	192	20.3%	60	45%	benign(0.014)	tolerated(0.29)	neutral(0.030)	NULL
CPSF3	51692	genome.wustl.edu	37	2	9582038	9582038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016207.2	+1	provisional	p.S343I	1.000	446	0%	172	16.3%	70	44.2%	benign(0.13)	tolerated(0.05)	neutral(0.356)	NULL
TAF1B	9014	genome.wustl.edu	37	2	10050891	10050891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005680.2	+1	reviewed	p.V328M	0.936	455	0%	241	26.6%	11	27.2%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
TAF1B	9014	genome.wustl.edu	37	2	10051642	10051642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005680.2	+1	reviewed	p.S379Y	0.987	205	0%	182	22.5%	3	33.3%	possibly_damaging(0.46)	tolerated(0.52)	neutral(0.160)	NULL
PDIA6	10130	genome.wustl.edu	37	2	10929938	10929938	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005742.2	-1	validated	p.S259	0.001	102	0%	59	18.6%	405	41.7%	-	-	-	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
KCNF1	3754	genome.wustl.edu	37	2	11053721	11053721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002236.4	+1	reviewed	p.S390I	1.000	169	0%	194	25.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ROCK2	9475	genome.wustl.edu	37	2	11337450	11337450	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004850.3	-1	reviewed	p.R1102*	1.000	307	0%	193	19.2%	6	0%	-	-	-	NULL
GREB1	9687	genome.wustl.edu	37	2	11741034	11741034	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014668.3	+1	reviewed	p.H814	0.986	222	0%	215	22.3%	0	-	-	-	-	NULL
LPIN1	23175	genome.wustl.edu	37	2	11923987	11923987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145693.1	+1	reviewed	p.V397I	1.000	346	0%	405	19.8%	1	0%	benign(0.005)	tolerated(1)	-	NULL
TRIB2	28951	genome.wustl.edu	37	2	12863520	12863520	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021643.3	+1	reviewed	p.G135	1.000	190	0%	178	15.2%	28	39.2%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TRIB2	28951	genome.wustl.edu	37	2	12880552	12880552	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021643.3	+1	reviewed	p.E222*	1.000	77	0%	46	13%	24	4.1%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MYCN	4613	genome.wustl.edu	37	2	16085655	16085655	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005378.4	+1	reviewed	p.I277	0.961	187	0.5%	170	25.9%	2	50%	-	-	-	HMMPfam_Myc_N
FAM49A	81553	genome.wustl.edu	37	2	16742308	16742308	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030797.3	-1	validated	p.T220	0.997	674	0%	201	19.9%	7	0%	-	-	-	HMMPfam_DUF1394
FAM49A	81553	genome.wustl.edu	37	2	16743285	16743285	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030797.3	-1	validated	p.F141	0.960	330	0%	123	13%	6	0%	-	-	-	HMMPfam_DUF1394
FAM49A	81553	genome.wustl.edu	37	2	16745284	16745284	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030797.3	-1	validated	p.R91	1.000	350	0%	134	17.9%	0	-	-	-	-	HMMPfam_DUF1394
RAD51AP2	729475	genome.wustl.edu	37	2	17698531	17698531	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099218.2	-1	provisional	p.Y384	0.009	109	0%	159	13.8%	0	-	-	-	-	NULL
GEN1	348654	genome.wustl.edu	37	2	17946293	17946293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130009.1	+1	validated	p.L160I	1.000	381	0.3%	251	13.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_XPG_I,HMMSmart_SM00484,superfamily_PIN domain-like
GEN1	348654	genome.wustl.edu	37	2	17962213	17962213	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130009.1	+1	validated	p.S578	0.000	163	0%	65	26.2%	3	33.3%	-	-	-	NULL
MSGN1	343930	genome.wustl.edu	37	2	17998322	17998322	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105569.1	+1	provisional	p.T179	0.548	40	0%	49	26.5%	0	-	-	-	-	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
NT5C1B	93034	genome.wustl.edu	37	2	18768378	18768378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002006.1	-1	validated	p.S61L	0.998	52	0%	68	22.1%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
OSR1	130497	genome.wustl.edu	37	2	19553536	19553536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145260.2	-1	validated	p.P11S	1.000	188	0%	150	19.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
WDR35	57539	genome.wustl.edu	37	2	20178626	20178626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001006657.1	-1	reviewed	p.E108K	1.000	427	0%	245	18.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
MATN3	4148	genome.wustl.edu	37	2	20205661	20205661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002381.4	-1	reviewed	p.A212S	1.000	30	0%	40	37.5%	0	-	benign(0.113)	tolerated(0.53)	neutral(0.017)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
HS1BP3	64342	genome.wustl.edu	37	2	20823725	20823725	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000415264	-1	known	p.Q37*	0.960	82	0%	60	15%	31	16.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HS1BP3	64342	genome.wustl.edu	37	2	20838209	20838209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022460.3	-1	reviewed	p.L204M	0.995	227	0%	244	14.8%	32	21.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
APOB	338	genome.wustl.edu	37	2	21226055	21226055	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000384.2	-1	reviewed	p.V4080D	0.006	253	0%	78	32.1%	0	-	benign(0.033)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21228320	21228320	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000384.2	-1	reviewed	p.L3807fs	0.033	-	-	-	-	-	-	-	-	-	NULL
ATAD2B	54454	genome.wustl.edu	37	2	24011466	24011466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017552.1	-1	validated	p.P898S	1.000	451	0.2%	256	22.7%	1	0%	possibly_damaging(0.463)	tolerated(0.06)	deleterious(0.475)	superfamily_P-loop containing nucleoside triphosphate hydrolases
C2orf44	80304	genome.wustl.edu	37	2	24255812	24255812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025203.2	-1	validated	p.P608H	0.010	309	0%	180	23.3%	6	50%	benign(0.354)	deleterious(0.05)	neutral(0.457)	NULL
C2orf44	80304	genome.wustl.edu	37	2	24261592	24261592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025203.2	-1	validated	p.R258H	0.000	217	0%	93	18.3%	1	0%	benign(0.013)	tolerated(0.55)	neutral(0.007)	NULL
C2orf44	80304	genome.wustl.edu	37	2	24262009	24262009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025203.2	-1	validated	p.C119Y	1.000	171	0%	107	19.6%	4	50%	probably_damaging(0.962)	deleterious(0.02)	deleterious(0.788)	NULL
TP53I3	9540	genome.wustl.edu	37	2	24305999	24305999	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004881.2	-1	reviewed	p.P54	0.922	32	0%	51	11.8%	34	14.7%	-	-	-	superfamily_GroES-like,HMMPfam_ADH_N
ITSN2	50618	genome.wustl.edu	37	2	24431969	24431969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006277.2	-1	reviewed	p.R1532M	1.000	164	0%	122	23%	11	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_PH,HMMSmart_SM00233,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_PH domain-like
ADCY3	109	genome.wustl.edu	37	2	25064178	25064178	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004036.3	-1	reviewed	p.D382	1.000	57	0%	64	23.4%	4	50%	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
EFR3B	22979	genome.wustl.edu	37	2	25362036	25362036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014971.1	+1	validated	p.A611T	1.000	99	0%	100	17%	0	-	benign(0)	tolerated(1)	-	NULL
EFR3B	22979	genome.wustl.edu	37	2	25377150	25377150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014971.1	+1	validated	p.P799S	0.998	460	0%	380	21.1%	2	0%	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
DNMT3A	1788	genome.wustl.edu	37	2	25469629	25469629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022552.3	-1	reviewed	p.A380V	0.986	33	0%	24	20.8%	12	8.3%	probably_damaging(0.97)	deleterious(0.02)	deleterious(0.795)	superfamily_Tudor/PWWP/MBT
ASXL2	55252	genome.wustl.edu	37	2	25965639	25965639	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018263.4	-1	validated	p.E1189	0.973	355	0%	263	10.6%	1	0%	-	-	-	NULL
ASXL2	55252	genome.wustl.edu	37	2	25982440	25982440	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018263.4	-1	validated	p.R284*	0.937	523	0%	244	21.7%	1	0%	-	-	-	NULL
KIF3C	3797	genome.wustl.edu	37	2	26151884	26151884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002254.6	-1	validated	p.A782V	0.880	190	0%	150	27.3%	1	0%	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
KIF3C	3797	genome.wustl.edu	37	2	26203511	26203511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002254.6	-1	validated	p.V426M	0.060	174	0%	198	20.7%	1	0%	possibly_damaging(0.449)	tolerated(0.09)	neutral(0.444)	NULL
FAM59B	150946	genome.wustl.edu	37	2	26410965	26410965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000380681	+1	known	p.G935R	1.000	122	0%	152	24.3%	7	28.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_SAM_1,superfamily_SAM/Pointed domain
HADHA	3030	genome.wustl.edu	37	2	26435480	26435480	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000182.4	-1	reviewed	p.I312L	0.051	392	0%	104	16.3%	135	40%	benign(0)	tolerated(0.97)	-	superfamily_ClpP/crotonase
GPR113	165082	genome.wustl.edu	37	2	26533871	26533871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145168.1	-1	validated	p.G909W	0.001	122	0%	79	22.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_2
OTOF	9381	genome.wustl.edu	37	2	26686436	26686436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194248.2	-1	reviewed	p.R1703C	1.000	29	0%	44	15.9%	6	100%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
OTOF	9381	genome.wustl.edu	37	2	26702406	26702406	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194248.2	-1	reviewed	p.A676	0.000	39	0%	29	20.7%	0	-	-	-	-	NULL
KCNK3	3777	genome.wustl.edu	37	2	26950540	26950540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002246.2	+1	reviewed	p.G97R	1.000	38	0%	48	16.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
KCNK3	3777	genome.wustl.edu	37	2	26951019	26951019	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002246.2	+1	reviewed	p.R256	0.999	37	0%	41	19.5%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
C2orf18	54978	genome.wustl.edu	37	2	26987226	26987226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017877.3	+1	validated	p.W3C	1.000	21	0%	18	33.3%	25	48%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C2orf18	54978	genome.wustl.edu	37	2	27001215	27001215	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017877.3	+1	validated	p.L318	0.992	106	0%	107	19.6%	77	36.3%	-	-	-	NULL
MAPRE3	22924	genome.wustl.edu	37	2	27246265	27246265	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012326.2	+1	reviewed	p.F63V	1.000	143	0%	156	22.4%	2	50%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain
TMEM214	54867	genome.wustl.edu	37	2	27258858	27258858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017727.4	+1	validated	p.R220C	1.000	307	0%	282	18.4%	45	31.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2359
AGBL5	60509	genome.wustl.edu	37	2	27276360	27276360	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021831.5	+1	validated	p.Y102*	1.000	161	0%	122	23%	18	33.3%	-	-	-	NULL
AGBL5	60509	genome.wustl.edu	37	2	27276385	27276385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021831.5	+1	validated	p.R111C	1.000	122	0%	102	18.6%	16	75%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
AGBL5	60509	genome.wustl.edu	37	2	27279542	27279542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021831.5	+1	validated	p.D473N	1.000	214	0%	172	15.7%	15	6.6%	possibly_damaging(0.773)	deleterious(0.02)	deleterious(0.670)	superfamily_Zn-dependent exopeptidases
AGBL5	60509	genome.wustl.edu	37	2	27293065	27293065	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021831.5	+1	validated	p.P865	0.578	508	0%	656	20.4%	12	41.6%	-	-	-	NULL
EMILIN1	11117	genome.wustl.edu	37	2	27305087	27305087	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007046.3	+1	reviewed	p.T216	0.009	28	0%	35	20%	13	0%	-	-	-	NULL
EMILIN1	11117	genome.wustl.edu	37	2	27306297	27306297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007046.3	+1	reviewed	p.G620C	0.993	26	0%	23	30.4%	14	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SLC5A6	8884	genome.wustl.edu	37	2	27423902	27423902	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021095.2	-1	validated	p.S576	0.981	188	0%	122	19.7%	51	43.1%	-	-	-	NULL
SLC5A6	8884	genome.wustl.edu	37	2	27424579	27424579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021095.2	-1	validated	p.T500I	0.906	238	0%	151	17.9%	47	38.2%	benign(0.068)	tolerated(0.05)	neutral(0.350)	NULL
CAD	790	genome.wustl.edu	37	2	27448716	27448716	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004341.3	+1	reviewed	p.V588	1.000	369	0%	280	18.6%	8	37.5%	-	-	-	HMMPfam_CPSase_L_D2,superfamily_SSF56059
CAD	790	genome.wustl.edu	37	2	27455315	27455315	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004341.3	+1	reviewed	e18-1	1.000	171	0%	130	13.8%	0	-	-	-	-	-
DNAJC5G	285126	genome.wustl.edu	37	2	27503033	27503033	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173650.1	+1	provisional	e4-1	0.497	459	0%	328	25.6%	0	-	-	-	-	-
GTF3C2	2976	genome.wustl.edu	37	2	27550095	27550095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001035521.1	-1	validated	p.E822D	0.999	115	0%	78	16.7%	85	31.7%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	superfamily_WD40 repeat-like
SNX17	9784	genome.wustl.edu	37	2	27598412	27598412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014748.2	+1	reviewed	p.L272V	1.000	73	0%	79	25.3%	141	42.5%	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_FERM_M
SNX17	9784	genome.wustl.edu	37	2	27599479	27599479	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014748.2	+1	reviewed	p.L436	1.000	447	0.2%	475	13.1%	214	16.3%	-	-	-	NULL
ZNF513	130557	genome.wustl.edu	37	2	27600824	27600824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144631.4	-1	validated	p.R405Q	1.000	86	0%	103	22.3%	25	36%	possibly_damaging(0.939)	tolerated(0.25)	neutral(0.421)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NRBP1	29959	genome.wustl.edu	37	2	27656162	27656162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013392.2	+1	validated	p.T8S	1.000	201	0%	141	24.1%	54	33.3%	-	-	-	NULL
NRBP1	29959	genome.wustl.edu	37	2	27663710	27663710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013392.2	+1	validated	p.R411Q	1.000	118	0%	140	15.7%	133	33%	possibly_damaging(0.812)	tolerated(0.4)	neutral(0.322)	NULL
IFT172	26160	genome.wustl.edu	37	2	27672168	27672168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015662.1	-1	validated	p.T1435I	1.000	246	0%	177	15.8%	15	66.6%	benign(0.017)	tolerated(0.15)	neutral(0.241)	NULL
GCKR	2646	genome.wustl.edu	37	2	27721181	27721181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001486.3	+1	reviewed	p.F115L	1.000	155	0%	224	21%	0	-	benign(0.004)	tolerated(0.08)	neutral(0.300)	superfamily_SIS domain
GCKR	2646	genome.wustl.edu	37	2	27746260	27746260	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001486.3	+1	reviewed	p.K611T	0.227	84	0%	39	10.3%	1	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
C2orf16	84226	genome.wustl.edu	37	2	27803514	27803514	+	Missense_Mutation	SNP	C	C	T	rs143205707	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032266.3	+1	validated	p.R1359W	0.285	120	0.8%	95	27.4%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZNF512	84450	genome.wustl.edu	37	2	27822540	27822540	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032434.2	+1	validated	p.L123H	1.000	435	0%	306	11.1%	14	7.1%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
GPN1	11321	genome.wustl.edu	37	2	27861103	27861103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007266.3	+1	reviewed	p.F198S	1.000	610	0%	296	23%	36	41.6%	benign(0.229)	deleterious(0)	neutral(0.468)	HMMPfam_ATP_bind_1,superfamily_SSF52540
ENSG00000223522	0	genome.wustl.edu	37	2	28532847	28532847	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000418963	-1	known	NULL	0.000	201	0%	126	30.2%	0	-	-	-	-	-
FOSL2	2355	genome.wustl.edu	37	2	28631654	28631654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005253.3	+1	reviewed	p.R128H	1.000	45	0%	57	12.3%	41	48.7%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00338,HMMPfam_bZIP_2
FOSL2	2355	genome.wustl.edu	37	2	28635083	28635083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005253.3	+1	reviewed	p.S250N	1.000	20	0%	30	23.3%	35	40%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
PLB1	151056	genome.wustl.edu	37	2	28772923	28772923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153021.4	+1	validated	p.R352K	0.009	274	0%	118	20.3%	0	-	benign(0.045)	tolerated(0.36)	neutral(0.022)	NULL
PLB1	151056	genome.wustl.edu	37	2	28854923	28854923	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000404858	+1	known	p.P1294H	0.410	250	0.4%	148	20.3%	4	25%	-	-	-	HMMPfam_Lipase_GDSL,superfamily_SGNH hydrolase
WDR43	23160	genome.wustl.edu	37	2	29137006	29137006	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015131.1	+1	validated	p.Q226	0.998	342	0%	244	20.9%	16	43.7%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
FAM179A	165186	genome.wustl.edu	37	2	29237302	29237302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199280.2	+1	validated	p.A307T	0.000	123	0%	125	27.2%	1	0%	benign(0.14)	tolerated(0.11)	neutral(0.284)	NULL
FAM179A	165186	genome.wustl.edu	37	2	29245064	29245064	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199280.2	+1	validated	p.E467	0.863	262	0%	210	19%	1	0%	-	-	-	superfamily_ARM repeat
C2orf71	388939	genome.wustl.edu	37	2	29287819	29287819	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001029883.1	-1	provisional	p.H1261	0.964	32	0%	31	16.1%	0	-	-	-	-	NULL
ALK	238	genome.wustl.edu	37	2	29416607	29416607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004304.3	-1	reviewed	p.S1449Y	0.396	100	0%	53	13.2%	0	-	benign(0.052)	deleterious(0.01)	neutral(0.409)	NULL
GALNT14	79623	genome.wustl.edu	37	2	31133788	31133788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024572.2	-1	validated	p.H546Q	1.000	178	0%	84	22.6%	147	35.3%	benign(0.261)	tolerated(1)	neutral(0.027)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
CAPN14	440854	genome.wustl.edu	37	2	31420130	31420130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145122.1	-1	validated	p.G287V	1.000	641	0%	386	24.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
EHD3	30845	genome.wustl.edu	37	2	31483576	31483576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014600.2	+1	validated	p.A235T	1.000	232	0%	133	12%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
XDH	7498	genome.wustl.edu	37	2	31587053	31587053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000379.3	-1	reviewed	p.V868M	0.996	208	0%	103	26.2%	1	100%	benign(0.012)	deleterious(0)	neutral(0.445)	HMMPfam_Ald_Xan_dh_C2,superfamily_Ald_xan_DH_mo_bd
SLC30A6	55676	genome.wustl.edu	37	2	32445675	32445675	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017964.2	+1	provisional	p.G427*	1.000	212	0%	47	27.7%	17	41.1%	-	-	-	NULL
NLRC4	58484	genome.wustl.edu	37	2	32476527	32476527	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000360906	-1	known	p.E136*	1.000	181	0%	108	32.4%	2	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
BIRC6	57448	genome.wustl.edu	37	2	32613983	32613983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016252.3	+1	reviewed	p.G271R	1.000	309	0.3%	143	29.4%	4	25%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32640546	32640546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016252.3	+1	reviewed	p.E729D	1.000	186	0%	120	15.8%	0	-	possibly_damaging(0.882)	tolerated(0.42)	neutral(0.358)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32664657	32664657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016252.3	+1	reviewed	p.G1238V	1.000	346	0%	282	26.2%	2	50%	possibly_damaging(0.876)	deleterious(0.03)	deleterious(0.706)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32693798	32693798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016252.3	+1	reviewed	p.T2025N	1.000	397	0%	185	10.3%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32724749	32724749	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016252.3	+1	reviewed	p.H2868	0.992	457	0%	257	15.6%	0	-	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32820188	32820188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016252.3	+1	reviewed	p.A4530V	1.000	134	0%	67	19.4%	25	20%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
TTC27	55622	genome.wustl.edu	37	2	32903922	32903922	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017735.3	+1	provisional	e9-1	1.000	281	0%	188	22.3%	0	-	-	-	-	-
LTBP1	4052	genome.wustl.edu	37	2	33622306	33622306	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206943.2	+1	reviewed	p.C1648*	1.000	533	0%	205	21.5%	45	31.1%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
RASGRP3	25780	genome.wustl.edu	37	2	33783812	33783812	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001139488.1	+1	validated	p.L593	1.000	176	0.6%	125	32%	1	0%	-	-	-	NULL
VIT	5212	genome.wustl.edu	37	2	37032684	37032684	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053276.3	+1	validated	p.T422	0.001	151	0%	99	20.2%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
HEATR5B	54497	genome.wustl.edu	37	2	37241150	37241150	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019024.1	-1	validated	p.W1373*	1.000	128	0%	55	21.8%	8	0%	-	-	-	NULL
HEATR5B	54497	genome.wustl.edu	37	2	37292131	37292131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019024.1	-1	validated	p.L446I	0.996	110	0%	52	23.1%	3	33.3%	benign(0.076)	tolerated(0.65)	neutral(0.009)	superfamily_ARM repeat
EIF2AK2	5610	genome.wustl.edu	37	2	37336408	37336408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135651.1	-1	validated	p.D470Y	1.000	301	0%	124	20.2%	55	50.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EIF2AK2	5610	genome.wustl.edu	37	2	37353432	37353432	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135651.1	-1	validated	p.E303V	0.924	265	0%	130	19.2%	19	42.1%	benign(0.17)	deleterious(0.01)	neutral(0.421)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SULT6B1	391365	genome.wustl.edu	37	2	37398617	37398617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001032377.1	-1	provisional	p.Q209H	0.990	278	0%	208	10.1%	0	-	possibly_damaging(0.565)	tolerated(0.07)	deleterious(0.512)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
CEBPZ	10153	genome.wustl.edu	37	2	37455473	37455473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005760.2	-1	validated	p.T288I	1.000	181	0%	145	22.8%	17	52.9%	possibly_damaging(0.714)	deleterious(0.01)	deleterious(0.663)	NULL
C2orf56	55471	genome.wustl.edu	37	2	37464951	37464951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144736.4	+1	validated	p.A117T	0.010	140	0%	171	22.8%	8	37.5%	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMPfam_DUF185
C2orf56	55471	genome.wustl.edu	37	2	37475277	37475277	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144736.4	+1	validated	e10-1	1.000	323	0%	176	22.7%	0	-	-	-	-	-
DHX57	90957	genome.wustl.edu	37	2	39075457	39075457	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000452978	-1	known	p.A30T	0.998	191	0%	88	25%	6	83.3%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SOS1	6654	genome.wustl.edu	37	2	39250137	39250137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005633.3	-1	reviewed	p.P478S	1.000	285	0%	97	17.5%	3	33.3%	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SOS1	6654	genome.wustl.edu	37	2	39250280	39250280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005633.3	-1	reviewed	p.D430A	1.000	162	0%	50	10%	3	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_PH domain-like
CDKL4	344387	genome.wustl.edu	37	2	39431725	39431725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009565.1	-1	provisional	p.L133I	0.999	344	0.3%	240	16.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase
MAP4K3	8491	genome.wustl.edu	37	2	39505612	39505612	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003618.2	-1	reviewed	p.F577C	1.000	207	0%	238	11.8%	9	11.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_CNH,HMMSmart_SM00036
MAP4K3	8491	genome.wustl.edu	37	2	39515273	39515273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003618.2	-1	reviewed	p.P488H	0.992	616	0%	282	21.3%	5	80%	benign(0.013)	deleterious(0.05)	neutral(0.346)	superfamily_Protein kinase-like (PK-like)
TMEM178	130733	genome.wustl.edu	37	2	39931277	39931277	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152390.2	+1	validated	p.R153*	1.000	236	0%	194	20.6%	1	100%	-	-	-	NULL
SLC8A1	6546	genome.wustl.edu	37	2	40657409	40657409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021097.2	-1	validated	p.M4I	0.993	116	0%	38	21.1%	1	0%	benign(0.258)	tolerated(0.07)	neutral(0.346)	NULL
MTA3	57504	genome.wustl.edu	37	2	42836642	42836642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020744.2	+1	provisional	p.T79A	1.000	238	0%	287	21.3%	22	59%	benign(0.006)	tolerated(0.07)	neutral(0.319)	HMMPfam_BAH,HMMSmart_BAH
MTA3	57504	genome.wustl.edu	37	2	42931414	42931414	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020744.2	+1	provisional	p.Q369L	0.801	289	0%	184	19%	46	8.6%	benign(0.01)	tolerated(0.37)	neutral(0.019)	NULL
ZFP36L2	678	genome.wustl.edu	37	2	43453431	43453431	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006887.4	-1	reviewed	p.A8	1.000	75	0%	57	26.3%	54	40.7%	-	-	-	NULL
THADA	63892	genome.wustl.edu	37	2	43779469	43779469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083953.1	-1	validated	p.C895Y	0.998	123	0%	77	19.5%	9	44.4%	benign(0)	tolerated(0.38)	neutral(0.018)	superfamily_ARM repeat
THADA	63892	genome.wustl.edu	37	2	43814130	43814130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083953.1	-1	validated	p.S105I	0.994	194	0%	126	19%	2	0%	possibly_damaging(0.837)	deleterious(0.01)	deleterious(0.725)	NULL
THADA	63892	genome.wustl.edu	37	2	43819494	43819494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083953.1	-1	validated	p.A13V	0.754	129	0%	105	22.9%	3	66.6%	possibly_damaging(0.624)	tolerated(0.11)	deleterious(0.489)	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43927611	43927611	+	Missense_Mutation	SNP	C	C	T	rs147485721	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172069.3	+1	validated	p.T505M	0.174	296	0%	159	22%	0	-	benign(0.395)	tolerated(0.35)	neutral(0.147)	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43984381	43984381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172069.3	+1	validated	p.G1307S	1.000	272	0%	150	21.3%	1	0%	benign(0.013)	tolerated(0.2)	neutral(0.050)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
ABCG8	64241	genome.wustl.edu	37	2	44073329	44073329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022437.2	+1	reviewed	p.Q67H	0.693	118	0%	93	20.4%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LRPPRC	10128	genome.wustl.edu	37	2	44128599	44128599	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133259.3	-1	reviewed	p.T1143	0.779	289	0%	121	21.5%	146	47.9%	-	-	-	superfamily_SSF48452
LRPPRC	10128	genome.wustl.edu	37	2	44190793	44190793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133259.3	-1	reviewed	p.Q474H	0.619	317	0%	170	17.6%	25	40%	possibly_damaging(0.716)	tolerated(0.22)	neutral(0.301)	HMMPfam_PPR
CAMKMT	79823	genome.wustl.edu	37	2	44999213	44999213	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024766.3	+1	validated	p.L311	1.000	226	0%	340	16.8%	35	40%	-	-	-	NULL
SRBD1	55133	genome.wustl.edu	37	2	45645516	45645516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018079.4	-1	validated	p.R774Q	0.972	368	0.3%	240	28.3%	15	40%	benign(0.044)	tolerated(0.61)	neutral(0.007)	NULL
PRKCE	5581	genome.wustl.edu	37	2	46228591	46228591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005400.2	+1	reviewed	p.N291S	1.000	199	0%	78	16.7%	1	100%	benign(0.004)	tolerated(0.83)	neutral(0.001)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
EPAS1	2034	genome.wustl.edu	37	2	46605884	46605884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001430.4	+1	reviewed	p.A511V	0.931	249	0%	214	24.3%	20	15%	possibly_damaging(0.449)	deleterious(0.05)	deleterious(0.492)	NULL
ATP6V1E2	90423	genome.wustl.edu	37	2	46739485	46739485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080653.3	-1	validated	p.Q122H	0.998	156	0%	112	19.6%	8	50%	benign(0.199)	deleterious(0.03)	neutral(0.384)	HMMPfam_vATP-synt_E
TTC7A	57217	genome.wustl.edu	37	2	47249102	47249102	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020458.2	+1	validated	p.S498	1.000	70	0%	58	36.2%	17	41.1%	-	-	-	HMMSmart_SM00028,superfamily_TPR-like
TTC7A	57217	genome.wustl.edu	37	2	47256503	47256503	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020458.2	+1	validated	p.T594	0.072	64	0%	46	32.6%	22	45.4%	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
MSH6	2956	genome.wustl.edu	37	2	48023108	48023108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000179.2	+1	reviewed	p.R178H	1.000	285	0%	171	22.8%	2	0%	probably_damaging(0.997)	tolerated(0.1)	deleterious(0.752)	superfamily_Tudor/PWWP/MBT
MSH6	2956	genome.wustl.edu	37	2	48026707	48026707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000179.2	+1	reviewed	p.G529C	1.000	345	0.3%	142	21.8%	6	33.3%	benign(0.403)	tolerated(0.2)	neutral(0.178)	NULL
MSH6	2956	genome.wustl.edu	37	2	48033396	48033396	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000179.2	+1	reviewed	p.E1234*	1.000	286	0%	82	45.1%	8	62.5%	-	-	-	HMMPfam_MutS_V,HMMSmart_SM00534,superfamily_P-loop containing nucleoside triphosphate hydrolases
MSH6	2956	genome.wustl.edu	37	2	48033641	48033641	+	Silent	SNP	G	G	A	rs2229018	byCluster;byFrequency	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000179.2	+1	reviewed	p.T1284	0.931	143	0%	59	23.7%	23	17.3%	-	-	-	HMMPfam_MutS_V,HMMSmart_SM00534,superfamily_P-loop containing nucleoside triphosphate hydrolases
FBXO11	80204	genome.wustl.edu	37	2	48036378	48036378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025133.3	-1	reviewed	p.A741D	1.000	573	0%	244	17.2%	34	29.4%	probably_damaging(0.983)	tolerated(0.31)	neutral(0.456)	HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like,superfamily_SSF81383
PPP1R21	129285	genome.wustl.edu	37	2	48668082	48668082	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_024188.1	+1	validated	NULL	0.998	24	0%	25	44%	3	0%	-	-	-	-
ENSG00000205011	0	genome.wustl.edu	37	2	48757048	48757048	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000378305	+1	known	p.G17	0.001	29	0%	29	13.8%	0	-	-	-	-	NULL
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48897064	48897064	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172311.1	+1	reviewed	p.E1098	0.995	270	0%	158	23.4%	0	-	-	-	-	HMMPfam_TFIIA
FSHR	2492	genome.wustl.edu	37	2	49217706	49217706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000145.3	-1	reviewed	p.L149I	1.000	498	0%	358	12.8%	0	-	possibly_damaging(0.832)	deleterious(0.01)	deleterious(0.723)	superfamily_L domain-like
FSHR	2492	genome.wustl.edu	37	2	49247298	49247298	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000145.3	-1	reviewed	p.E76*	1.000	316	0%	82	18.3%	0	-	-	-	-	superfamily_L domain-like
NRXN1	9378	genome.wustl.edu	37	2	50282165	50282165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135659.1	-1	reviewed	p.R1286C	1.000	239	0%	83	18.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN1	9378	genome.wustl.edu	37	2	50758472	50758472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135659.1	-1	reviewed	p.R787Q	1.000	141	0%	20	25%	0	-	probably_damaging(1)	tolerated(0.31)	deleterious(0.527)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN1	9378	genome.wustl.edu	37	2	50847315	50847315	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135659.1	-1	reviewed	p.I429L	1.000	156	0%	81	18.5%	0	-	possibly_damaging(0.903)	tolerated(0.31)	neutral(0.385)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN1	9378	genome.wustl.edu	37	2	51254779	51254779	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135659.1	-1	reviewed	p.S211	0.981	12	0%	10	50%	0	-	-	-	-	superfamily_ConA_like_lec_gl
NRXN1	9378	genome.wustl.edu	37	2	51254859	51254859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135659.1	-1	reviewed	p.R185C	0.777	26	0%	22	18.2%	0	-	possibly_damaging(0.7)	deleterious(0.05)	deleterious(0.597)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
ASB3	51130	genome.wustl.edu	37	2	53956607	53956607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016115.3	-1	reviewed	p.Q152H	1.000	270	0%	74	12.2%	6	33.3%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PSME4	23198	genome.wustl.edu	37	2	54125012	54125012	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014614.2	-1	validated	p.R1201*	1.000	231	0%	71	21.1%	11	18.1%	-	-	-	superfamily_ARM repeat
PSME4	23198	genome.wustl.edu	37	2	54150254	54150254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014614.2	-1	validated	p.C637Y	1.000	259	0%	240	29.2%	2	0%	possibly_damaging(0.537)	deleterious(0.05)	deleterious(0.527)	NULL
TSPYL6	388951	genome.wustl.edu	37	2	54482540	54482540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003937.2	-1	validated	p.G250D	0.971	118	0%	104	24%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAP
SPTBN1	6711	genome.wustl.edu	37	2	54856407	54856407	+	Silent	SNP	G	G	A	rs146810411	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003128.2	+1	reviewed	p.S712	0.000	40	0%	31	19.4%	11	72.7%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54872459	54872459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003128.2	+1	reviewed	p.E1455K	1.000	132	0%	81	18.5%	51	0%	benign(0.024)	tolerated(0.55)	neutral(0.008)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54874274	54874274	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003128.2	+1	reviewed	p.Q1625*	1.000	138	0%	50	20%	41	2.4%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54876950	54876950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003128.2	+1	reviewed	p.L1801I	1.000	170	0%	100	18%	79	10.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54880912	54880912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003128.2	+1	reviewed	p.R1915H	1.000	48	0%	52	23.1%	63	68.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54895655	54895655	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003128.2	+1	reviewed	p.D2348	1.000	58	0%	50	16%	92	6.5%	-	-	-	NULL
EML6	400954	genome.wustl.edu	37	2	55074654	55074654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039753.2	+1	validated	p.A361T	1.000	115	0%	46	26.1%	0	-	probably_damaging(0.996)	tolerated(0.59)	neutral(0.466)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_WD40 repeat-like
EML6	400954	genome.wustl.edu	37	2	55143932	55143932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039753.2	+1	validated	p.L1179M	0.999	168	0%	63	22.2%	0	-	probably_damaging(0.983)	tolerated(0.06)	deleterious(0.752)	superfamily_WD40 repeat-like
MTIF2	4528	genome.wustl.edu	37	2	55471199	55471199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005369.1	-1	reviewed	p.S426Y	1.000	268	0%	214	22.9%	32	40.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_GTP_EFTU_D2,superfamily_Translat_factor
CCDC88A	55704	genome.wustl.edu	37	2	55561946	55561946	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135597.1	-1	validated	p.E671*	1.000	102	0%	103	24.3%	1	0%	-	-	-	NULL
SMEK2	57223	genome.wustl.edu	37	2	55825883	55825883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122964.1	-1	validated	p.I197S	1.000	272	0%	164	26.2%	15	40%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_DUF625,superfamily_ARM repeat
SMEK2	57223	genome.wustl.edu	37	2	55826136	55826136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122964.1	-1	validated	p.L113I	1.000	429	0%	344	18.6%	13	46.1%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
PNPT1	87178	genome.wustl.edu	37	2	55883311	55883311	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033109.3	-1	validated	p.F466V	1.000	370	0%	438	22.6%	20	40%	benign(0.106)	-	-	HMMPfam_RNase_PH,superfamily_Ribosomal_S5_D2-typ_fold
EFEMP1	2202	genome.wustl.edu	37	2	56103765	56103765	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039348.1	-1	reviewed	p.N291	1.000	137	0%	41	14.6%	4	0%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
EFEMP1	2202	genome.wustl.edu	37	2	56149572	56149572	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039348.1	-1	reviewed	p.L2V	1.000	347	0%	373	21.4%	1	0%	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
KIAA1841	84542	genome.wustl.edu	37	2	61304145	61304145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001129993.1	+1	validated	p.K174N	1.000	256	0%	148	20.3%	0	-	probably_damaging(0.983)	tolerated(0.24)	neutral(0.466)	NULL
KIAA1841	84542	genome.wustl.edu	37	2	61308619	61308619	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001129993.1	+1	validated	p.S235T	1.000	159	0%	199	11.1%	4	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
USP34	9736	genome.wustl.edu	37	2	61455834	61455834	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000411912	-1	known	p.A223T	0.962	286	0%	131	26%	14	28.5%	-	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61512020	61512020	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014709.3	-1	validated	p.L1608	1.000	124	0%	76	32.9%	3	66.6%	-	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61541783	61541783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014709.3	-1	validated	p.S1160I	1.000	502	0%	262	18.7%	0	-	possibly_damaging(0.81)	-	-	NULL
XPO1	7514	genome.wustl.edu	37	2	61709578	61709578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003400.3	-1	reviewed	p.N970S	1.000	512	0%	336	18.2%	114	45.6%	probably_damaging(0.954)	deleterious(0.02)	deleterious(0.780)	HMMPfam_CRM1_C,superfamily_ARM-type_fold
EHBP1	23301	genome.wustl.edu	37	2	63220713	63220713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015252.3	+1	reviewed	p.R999C	1.000	266	0%	48	25%	13	53.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OTX1	5013	genome.wustl.edu	37	2	63283434	63283434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014562.2	+1	reviewed	p.R350W	0.998	91	0%	132	16.7%	3	100%	unknown(0)	deleterious(0)	-	NULL
WDPCP	51057	genome.wustl.edu	37	2	63631448	63631448	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015910.4	-1	validated	p.A390	0.999	157	0%	44	25%	2	50%	-	-	-	NULL
AFTPH	54812	genome.wustl.edu	37	2	64780403	64780403	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203437.2	+1	validated	p.R599*	1.000	163	0.6%	134	20.1%	19	15.7%	-	-	-	NULL
AFTPH	54812	genome.wustl.edu	37	2	64796285	64796285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203437.2	+1	validated	p.Y716C	1.000	290	0%	89	21.3%	20	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SERTAD2	9792	genome.wustl.edu	37	2	64863587	64863587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014755.2	-1	validated	p.D140G	0.973	108	0%	128	10.9%	5	20%	benign(0.418)	deleterious(0.04)	deleterious(0.484)	NULL
SLC1A4	6509	genome.wustl.edu	37	2	65237843	65237843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003038.3	+1	validated	p.R249H	1.000	438	0.2%	169	27.2%	12	0%	unknown(0)	deleterious(0.04)	-	HMMPfam_SDF
CEP68	23177	genome.wustl.edu	37	2	65298676	65298676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015147.2	+1	validated	p.A149D	0.786	148	0%	118	34.7%	3	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ACTR2	10097	genome.wustl.edu	37	2	65473766	65473766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005386.2	+1	reviewed	p.D95N	1.000	410	0%	204	20.1%	62	24.1%	benign(0.028)	tolerated(0.25)	neutral(0.038)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ACTR2	10097	genome.wustl.edu	37	2	65488418	65488418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005386.2	+1	reviewed	p.R263K	1.000	442	0%	230	23.9%	115	28.6%	benign(0.019)	deleterious(0.02)	neutral(0.384)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
SPRED2	200734	genome.wustl.edu	37	2	65540795	65540795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181784.2	-1	validated	p.S366L	1.000	91	0%	87	21.8%	14	14.2%	possibly_damaging(0.915)	tolerated(0.06)	deleterious(0.689)	HMMPfam_Sprouty
ETAA1	54465	genome.wustl.edu	37	2	67626429	67626429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019002.3	+1	validated	p.G118C	1.000	217	0%	260	20.8%	3	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
WDR92	116143	genome.wustl.edu	37	2	68358438	68358438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138458.2	-1	validated	p.L336I	0.995	301	0%	83	18.1%	15	13.3%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
PNO1	56902	genome.wustl.edu	37	2	68389771	68389771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020143.2	+1	provisional	p.R199Q	0.999	214	0%	169	33.7%	41	51.2%	possibly_damaging(0.881)	deleterious(0)	deleterious(0.788)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
PLEK	5341	genome.wustl.edu	37	2	68607979	68607979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002664.2	+1	validated	p.K108T	1.000	226	0%	52	32.7%	8	0%	possibly_damaging(0.89)	tolerated(0.13)	deleterious(0.603)	NULL
APLF	200558	genome.wustl.edu	37	2	68794511	68794511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173545.2	+1	validated	p.T442M	0.000	225	0%	49	14.3%	6	33.3%	benign(0.083)	tolerated(0.16)	neutral(0.066)	HMMPfam_zf-CCHH
ARHGAP25	9938	genome.wustl.edu	37	2	68962346	68962346	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007231.2	+1	validated	p.L5	0.994	517	0%	201	19.9%	4	0%	-	-	-	NULL
ARHGAP25	9938	genome.wustl.edu	37	2	69034378	69034378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000497259	+1	known	p.G6S	0.000	236	0%	82	12.2%	0	-	unknown(0)	-	-	NULL
GKN1	56287	genome.wustl.edu	37	2	69206014	69206014	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019617.3	+1	reviewed	p.A86	0.249	168	0%	99	25.3%	0	-	-	-	-	HMMPfam_BRICHOS
GFPT1	2673	genome.wustl.edu	37	2	69553340	69553340	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002056.2	-1	reviewed	p.K676T	1.000	360	0%	213	13.6%	93	23.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53697
GFPT1	2673	genome.wustl.edu	37	2	69586450	69586450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002056.2	-1	reviewed	p.V120I	1.000	250	0.4%	91	22%	27	37%	possibly_damaging(0.86)	tolerated(0.23)	neutral(0.374)	HMMPfam_GATase_2,superfamily_SSF56235
AAK1	22848	genome.wustl.edu	37	2	69769735	69769735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014911.3	-1	reviewed	p.L152I	1.000	258	0%	66	12.1%	1	0%	probably_damaging(0.993)	tolerated(0.13)	deleterious(0.703)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C2orf42	54980	genome.wustl.edu	37	2	70408540	70408540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017880.1	-1	predicted	p.C193Y	1.000	237	0%	110	35.5%	6	83.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
TIA1	7072	genome.wustl.edu	37	2	70463300	70463300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022173.2	-1	reviewed	p.G12S	1.000	249	0%	199	21.6%	17	29.4%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
PCYOX1	51449	genome.wustl.edu	37	2	70504479	70504479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016297.3	+1	validated	p.M491I	1.000	113	0%	80	26.3%	24	33.3%	possibly_damaging(0.452)	tolerated(0.35)	neutral(0.168)	HMMPfam_Prenylcys_lyase
MPHOSPH10	10199	genome.wustl.edu	37	2	71375179	71375179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005791.1	+1	reviewed	p.E536D	1.000	348	0%	221	15.8%	30	56.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Mpp10
ZNF638	27332	genome.wustl.edu	37	2	71654038	71654038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014972.1	+1	reviewed	p.L1680S	1.000	161	0%	122	14.8%	57	28%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DYSF	8291	genome.wustl.edu	37	2	71797059	71797059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130987.1	+1	reviewed	p.D992N	0.998	121	0%	117	23.1%	1	0%	possibly_damaging(0.728)	tolerated(0.07)	deleterious(0.584)	HMMSmart_DysFN
DYSF	8291	genome.wustl.edu	37	2	71838661	71838661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130987.1	+1	reviewed	p.V1376M	0.965	49	0%	41	24.4%	2	0%	possibly_damaging(0.7)	tolerated(0.12)	deleterious(0.512)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
DYSF	8291	genome.wustl.edu	37	2	71896784	71896784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130987.1	+1	reviewed	p.R1898C	1.000	336	0%	183	18.6%	15	6.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_C2,superfamily_C2_CaLB
CYP26B1	56603	genome.wustl.edu	37	2	72359466	72359466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019885.2	-1	reviewed	p.V477I	1.000	74	0%	55	29.1%	1	0%	possibly_damaging(0.948)	tolerated(0.72)	neutral(0.393)	superfamily_Cytochrome_P450
CYP26B1	56603	genome.wustl.edu	37	2	72362546	72362546	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019885.2	-1	reviewed	p.V144	0.990	33	0%	60	21.7%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP26B1	56603	genome.wustl.edu	37	2	72371240	72371240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019885.2	-1	reviewed	p.R103C	1.000	39	0%	62	27.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
SFXN5	94097	genome.wustl.edu	37	2	73249692	73249692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144579.2	-1	validated	p.P97L	1.000	171	0%	82	18.3%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Mtc
SFXN5	94097	genome.wustl.edu	37	2	73285676	73285676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144579.2	-1	validated	p.R51H	1.000	279	0%	146	20.5%	2	100%	benign(0.356)	deleterious(0.02)	deleterious(0.496)	HMMPfam_Mtc
RAB11FIP5	26056	genome.wustl.edu	37	2	73315539	73315539	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015470.2	-1	validated	p.Q403*	0.998	32	0%	46	26.1%	5	20%	-	-	-	NULL
RAB11FIP5	26056	genome.wustl.edu	37	2	73316229	73316229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015470.2	-1	validated	p.A216T	0.999	316	0%	233	26.2%	6	0%	benign(0.034)	tolerated(0.57)	neutral(0.008)	NULL
CCT7	10574	genome.wustl.edu	37	2	73479870	73479870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006429.3	+1	reviewed	p.A505T	1.000	110	0%	87	20.7%	801	38.3%	benign(0.392)	tolerated(0.13)	neutral(0.378)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
FBXO41	150726	genome.wustl.edu	37	2	73486395	73486395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080410.2	-1	validated	p.V888I	1.000	186	0%	212	17.5%	1	0%	possibly_damaging(0.68)	tolerated(0.31)	neutral(0.270)	superfamily_RNI-like
EGR4	1961	genome.wustl.edu	37	2	73518765	73518765	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001965.3	-1	validated	p.T427	1.000	66	0%	59	44.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ALMS1	7840	genome.wustl.edu	37	2	73675997	73675997	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015120.4	+1	reviewed	p.S780	0.002	88	0%	29	13.8%	0	-	-	-	-	NULL
ALMS1	7840	genome.wustl.edu	37	2	73677067	73677067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015120.4	+1	reviewed	p.T1137I	0.000	155	0%	39	10.3%	0	-	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73677977	73677977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015120.4	+1	reviewed	p.Q1440H	0.005	182	0%	49	22.4%	1	100%	probably_damaging(0.992)	tolerated(0.12)	deleterious(0.708)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73718347	73718347	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015120.4	+1	reviewed	p.L3086	0.986	212	0%	176	23.3%	3	66.6%	-	-	-	NULL
ALMS1	7840	genome.wustl.edu	37	2	73799771	73799771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015120.4	+1	reviewed	p.E3588D	0.025	129	0%	47	14.9%	7	14.2%	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	NULL
NAT8	9027	genome.wustl.edu	37	2	73868277	73868277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003960.3	-1	reviewed	p.T160I	0.998	133	0%	82	26.8%	1	100%	possibly_damaging(0.848)	tolerated(0.06)	deleterious(0.648)	HMMPfam_Acetyltransf_1,superfamily_Acyl_CoA_acyltransferase
TPRKB	51002	genome.wustl.edu	37	2	73961663	73961663	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016058.2	-1	validated	p.E12*	0.995	356	0%	170	15.9%	88	37.5%	-	-	-	NULL
DUSP11	8446	genome.wustl.edu	37	2	74002127	74002127	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003584.2	-1	reviewed	p.L121	0.980	363	0%	326	12.9%	17	17.6%	-	-	-	HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
TET3	200424	genome.wustl.edu	37	2	74327611	74327611	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144993.1	+1	provisional	p.S1097	0.571	139	0%	156	22.4%	2	100%	-	-	-	NULL
TET3	200424	genome.wustl.edu	37	2	74328434	74328434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144993.1	+1	provisional	p.R1372W	0.910	31	0%	44	18.2%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
SLC4A5	57835	genome.wustl.edu	37	2	74481817	74481817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021196.3	-1	reviewed	p.L348M	0.945	275	0%	298	22.1%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
SLC4A5	57835	genome.wustl.edu	37	2	74489356	74489356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021196.3	-1	reviewed	p.R240H	0.999	57	0%	41	26.8%	0	-	possibly_damaging(0.909)	tolerated(0.31)	neutral(0.389)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
DCTN1	1639	genome.wustl.edu	37	2	74589839	74589839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004082.3	-1	reviewed	p.A1183T	0.992	110	0%	78	26.9%	205	40.4%	benign(0.31)	tolerated(0.34)	neutral(0.119)	NULL
DCTN1	1639	genome.wustl.edu	37	2	74590120	74590120	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004082.3	-1	reviewed	e29+1	1.000	361	0%	182	23.1%	4	100%	-	-	-	-
DCTN1	1639	genome.wustl.edu	37	2	74597122	74597122	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004082.3	-1	reviewed	p.V454	1.000	367	0%	266	23.3%	53	47.1%	-	-	-	NULL
DCTN1	1639	genome.wustl.edu	37	2	74597618	74597618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004082.3	-1	reviewed	p.A368T	1.000	188	0%	142	19.7%	26	38.4%	possibly_damaging(0.909)	tolerated(0.67)	neutral(0.364)	superfamily_Spectrin repeat
DCTN1	1639	genome.wustl.edu	37	2	74604825	74604825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004082.3	-1	reviewed	p.T103I	1.000	547	0%	499	19.2%	33	27.2%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	superfamily_Cap-Gly domain
RTKN	6242	genome.wustl.edu	37	2	74653404	74653404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001015055.1	-1	reviewed	p.G553D	0.972	76	0%	98	19.4%	93	38.7%	benign(0.086)	tolerated(0.2)	neutral(0.056)	NULL
RTKN	6242	genome.wustl.edu	37	2	74659788	74659788	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001015055.1	-1	reviewed	p.T39	0.765	35	0%	60	25%	37	43.2%	-	-	-	HMMSmart_SM00742
DQX1	165545	genome.wustl.edu	37	2	74746802	74746802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133637.2	-1	validated	p.R563W	0.907	417	0%	408	18.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AUP1	550	genome.wustl.edu	37	2	74754243	74754243	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000412627	-1	known	p.F361	1.000	94	0%	94	29.8%	26	42.3%	-	-	-	NULL
AUP1	550	genome.wustl.edu	37	2	74756061	74756061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181575.3	-1	reviewed	p.P114H	1.000	78	0%	98	17.3%	256	32.8%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_PlsC
C2orf65	130951	genome.wustl.edu	37	2	74803653	74803653	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138804.3	-1	predicted	p.G288*	1.000	270	0%	104	15.4%	3	0%	-	-	-	NULL
HK2	3099	genome.wustl.edu	37	2	75109363	75109363	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000189.4	+1	reviewed	p.D612	0.420	78	0%	81	29.6%	15	26.6%	-	-	-	HMMPfam_Hexokinase_1,PatternScan_HEXOKINASES,superfamily_SSF53067
FAM176A	84141	genome.wustl.edu	37	2	75720435	75720435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135032.1	-1	validated	p.R129H	1.000	18	0%	24	37.5%	41	29.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
MRPL19	9801	genome.wustl.edu	37	2	75879719	75879719	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014763.3	+1	reviewed	p.C137	1.000	305	0%	286	22%	47	59.5%	-	-	-	NULL
GCFC2	6936	genome.wustl.edu	37	2	75916214	75916214	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003203.4	-1	validated	p.C493G	1.000	247	0%	132	25.8%	6	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_GCFC
GCFC2	6936	genome.wustl.edu	37	2	75919198	75919198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003203.4	-1	validated	p.S350Y	1.000	452	0%	198	19.2%	10	0%	possibly_damaging(0.8)	deleterious(0.04)	deleterious(0.650)	HMMPfam_GCFC
GCFC2	6936	genome.wustl.edu	37	2	75921548	75921548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003203.4	-1	validated	p.T280I	0.990	323	0.6%	185	21.1%	2	0%	probably_damaging(0.958)	tolerated(0.08)	deleterious(0.702)	HMMPfam_GCFC
LRRTM4	80059	genome.wustl.edu	37	2	77745641	77745641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134745.1	-1	validated	p.A452S	1.000	219	0%	42	26.2%	0	-	benign(0.003)	tolerated(0.2)	neutral(0.049)	NULL
LRRTM1	347730	genome.wustl.edu	37	2	80530073	80530073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178839.4	-1	validated	p.R291H	1.000	87	0%	104	12.5%	15	0%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	superfamily_SSF52058
CTNNA2	1496	genome.wustl.edu	37	2	80646641	80646641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004389.3	+1	validated	p.L402P	1.000	356	0%	95	18.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
CTNNA2	1496	genome.wustl.edu	37	2	80808840	80808840	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004389.3	+1	validated	p.E635*	1.000	187	0%	61	24.6%	0	-	-	-	-	HMMPfam_Vinculin
SUCLG1	8802	genome.wustl.edu	37	2	84658704	84658704	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003849.3	-1	reviewed	p.G251	0.996	404	0%	146	13.7%	180	24.4%	-	-	-	HMMPfam_Ligase_CoA,superfamily_CoA_ligase
DNAH6	1768	genome.wustl.edu	37	2	84775492	84775492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001370.1	+1	validated	p.T423A	0.998	395	0%	167	21.6%	1	0%	possibly_damaging(0.88)	tolerated(0.35)	neutral(0.364)	NULL
DNAH6	1768	genome.wustl.edu	37	2	84811292	84811292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001370.1	+1	validated	p.S800I	0.450	396	0%	294	19.7%	0	-	benign(0.074)	tolerated(0.39)	neutral(0.021)	NULL
DNAH6	1768	genome.wustl.edu	37	2	84851696	84851696	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001370.1	+1	validated	p.G1435	1.000	311	0.3%	76	19.7%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH6	1768	genome.wustl.edu	37	2	85012821	85012821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001370.1	+1	validated	p.L3681I	1.000	180	0%	81	22.2%	3	33.3%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_Dynein_heavy
C2orf89	129293	genome.wustl.edu	37	2	85097573	85097573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080824.1	-1	predicted	p.A149T	0.995	163	0.6%	109	11%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TCF7L1	83439	genome.wustl.edu	37	2	85536467	85536467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031283.1	+1	provisional	p.S550F	1.000	25	0%	24	16.7%	17	29.4%	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	NULL
RETSAT	54884	genome.wustl.edu	37	2	85576596	85576596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017750.3	-1	validated	p.T303N	0.999	181	0%	123	20.3%	17	23.5%	possibly_damaging(0.81)	deleterious(0.01)	deleterious(0.711)	superfamily_FAD/NAD(P)-binding domain
MAT2A	4144	genome.wustl.edu	37	2	85768278	85768278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005911.4	+1	validated	p.A55D	1.000	316	0%	494	13.2%	87	29.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_S-AdoMet_synt_N,superfamily_S-adenosylmethionine synthetase
GGCX	2677	genome.wustl.edu	37	2	85777153	85777153	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000821.4	-1	reviewed	p.P727	0.939	178	0%	156	23.1%	15	40%	-	-	-	NULL
VAMP8	8673	genome.wustl.edu	37	2	85808722	85808722	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003761.3	+1	validated	p.S62	0.144	473	0%	510	23.1%	587	31.5%	-	-	-	HMMPfam_Synaptobrevin
RNF181	51255	genome.wustl.edu	37	2	85823694	85823694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016494.3	+1	validated	p.D47N	1.000	239	0%	267	23.2%	372	38.7%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	NULL
RNF181	51255	genome.wustl.edu	37	2	85824144	85824144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000456023	+1	known	p.R78K	0.000	436	0%	429	13.3%	12	8.3%	unknown(0)	tolerated(0.29)	-	NULL
TMEM150A	129303	genome.wustl.edu	37	2	85826209	85826209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031738.2	-1	validated	p.A269V	1.000	66	0%	69	18.8%	20	55%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
TMEM150A	129303	genome.wustl.edu	37	2	85828166	85828166	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031738.2	-1	validated	p.L60	1.000	77	0%	114	24.6%	23	56.5%	-	-	-	HMMPfam_Frag1
POLR1A	25885	genome.wustl.edu	37	2	86317035	86317035	+	Missense_Mutation	SNP	G	G	A	rs187487275	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000409024	-1	known	p.P32L	0.620	426	0%	208	17.3%	4	25%	unknown(0)	-	-	NULL
PTCD3	55037	genome.wustl.edu	37	2	86360517	86360517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017952.5	+1	validated	p.D501Y	1.000	657	0.3%	222	25.7%	31	32.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IMMT	10989	genome.wustl.edu	37	2	86389120	86389120	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000419070	-1	known	p.C146*	0.991	208	0.5%	90	22.2%	54	22.2%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Mitofilin
IMMT	10989	genome.wustl.edu	37	2	86397897	86397897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006839.2	-1	validated	p.E210D	0.953	433	0%	193	27.5%	44	43.1%	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_Mitofilin
KDM3A	55818	genome.wustl.edu	37	2	86693925	86693925	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018433.5	+1	reviewed	p.R480*	0.097	89	0%	42	14.3%	4	0%	-	-	-	NULL
KDM3A	55818	genome.wustl.edu	37	2	86711135	86711135	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018433.5	+1	reviewed	p.H983P	0.998	332	0%	115	13.9%	12	16.6%	possibly_damaging(0.811)	deleterious(0.04)	deleterious(0.654)	superfamily_Clavaminate synthase-like
RNF103	7844	genome.wustl.edu	37	2	86831124	86831124	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005667.2	-1	reviewed	p.L634	0.997	521	0.2%	254	28%	39	38.4%	-	-	-	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
RNF103	7844	genome.wustl.edu	37	2	86832346	86832346	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005667.2	-1	reviewed	p.E226D	0.993	233	0%	143	23.8%	14	57.1%	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
KRCC1	51315	genome.wustl.edu	37	2	88327756	88327756	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016618.1	-1	provisional	p.D109	0.604	341	0%	173	23.7%	41	39%	-	-	-	NULL
SMYD1	150572	genome.wustl.edu	37	2	88405917	88405917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198274.2	+1	provisional	p.R352Q	1.000	242	0%	128	21.9%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
EIF2AK3	9451	genome.wustl.edu	37	2	88882968	88882968	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004836.5	-1	reviewed	p.K581N	0.841	623	0%	134	20.9%	5	40%	possibly_damaging(0.923)	tolerated(0.46)	neutral(0.385)	superfamily_Protein kinase-like (PK-like)
IGKV3-11	28914	genome.wustl.edu	37	2	89327145	89327145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000483158	-1	known	p.L13I	0.604	613	0.2%	332	10.5%	412	0%	benign(0.041)	tolerated(0.15)	neutral(0.243)	NULL
TEKT4	150483	genome.wustl.edu	37	2	95540702	95540702	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144705.2	+1	provisional	p.L299	0.993	70	0%	61	19.7%	1	0%	-	-	-	HMMPfam_Tektin
MRPS5	64969	genome.wustl.edu	37	2	95773964	95773964	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031902.3	-1	reviewed	p.W198*	1.000	493	0%	355	23.7%	56	1.7%	-	-	-	NULL
ZNF514	84874	genome.wustl.edu	37	2	95815619	95815619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032788.1	-1	provisional	p.C204Y	0.075	236	0%	208	15.4%	1	0%	benign(0)	tolerated(1)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF514	84874	genome.wustl.edu	37	2	95815713	95815713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032788.1	-1	provisional	p.L173F	0.000	230	0%	196	25.5%	5	80%	benign(0)	tolerated(0.69)	neutral(0.002)	NULL
LOC344065	344065	genome.wustl.edu	37	2	95880756	95880756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_292895.7	+1	model	p.R341Q	1.000	97	0%	76	26.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TRIM43	129868	genome.wustl.edu	37	2	96262004	96262004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138800.1	+1	provisional	p.P188T	0.002	653	0%	323	21.1%	0	-	possibly_damaging(0.437)	tolerated(0.56)	neutral(0.149)	NULL
GPAT2	150763	genome.wustl.edu	37	2	96690588	96690588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207328.2	-1	validated	p.S454N	0.996	68	0%	66	13.6%	3	0%	benign(0.212)	deleterious(0.03)	neutral(0.385)	NULL
SNRNP200	23020	genome.wustl.edu	37	2	96943290	96943290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014014.3	-1	reviewed	p.R1973H	1.000	150	0%	106	20.8%	246	44.7%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_Sec63,HMMSmart_SM00611
SNRNP200	23020	genome.wustl.edu	37	2	96956439	96956439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014014.3	-1	reviewed	p.A846S	1.000	327	0%	138	18.8%	39	38.4%	benign(0.02)	tolerated(0.05)	neutral(0.346)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
SNRNP200	23020	genome.wustl.edu	37	2	96959180	96959180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014014.3	-1	reviewed	p.R637Q	1.000	133	0%	64	23.4%	29	34.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
NCAPH	23397	genome.wustl.edu	37	2	97019071	97019071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015341.3	+1	reviewed	p.R313H	1.000	322	0%	184	14.7%	5	0%	probably_damaging(0.984)	tolerated(0.16)	deleterious(0.490)	HMMPfam_Barren
NCAPH	23397	genome.wustl.edu	37	2	97019135	97019135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015341.3	+1	reviewed	p.E334D	1.000	373	0%	161	23%	10	0%	probably_damaging(0.996)	tolerated(0.46)	deleterious(0.474)	HMMPfam_Barren
NCAPH	23397	genome.wustl.edu	37	2	97020046	97020046	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015341.3	+1	reviewed	p.N376	0.074	178	0%	128	18.8%	7	71.4%	-	-	-	HMMPfam_Barren
ARID5A	10865	genome.wustl.edu	37	2	97217534	97217534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_212481.1	+1	validated	p.K423N	0.667	54	0%	54	22.2%	46	21.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FER1L5	90342	genome.wustl.edu	37	2	97335882	97335882	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113382.1	+1	provisional	p.G458	0.324	452	0%	172	16.9%	0	-	-	-	-	NULL
LMAN2L	81562	genome.wustl.edu	37	2	97377498	97377498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142292.1	-1	validated	p.D238Y	1.000	120	0%	48	25%	20	55%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl
LMAN2L	81562	genome.wustl.edu	37	2	97405695	97405695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142292.1	-1	validated	p.L28P	1.000	86	0%	58	12.1%	3	100%	benign(0.213)	deleterious(0.01)	neutral(0.427)	NULL
CNNM4	26504	genome.wustl.edu	37	2	97462764	97462764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020184.3	+1	reviewed	p.A473V	1.000	74	0%	89	25.8%	4	25%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_CBS
CNNM3	26505	genome.wustl.edu	37	2	97494792	97494792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017623.4	+1	validated	p.Q660H	0.998	129	0%	136	22.1%	20	45%	possibly_damaging(0.691)	deleterious(0.02)	deleterious(0.631)	NULL
SEMA4C	54910	genome.wustl.edu	37	2	97529704	97529704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017789.4	-1	validated	p.G430E	0.989	52	0%	67	28.4%	29	51.7%	possibly_damaging(0.768)	deleterious(0.01)	deleterious(0.691)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SEMA4C	54910	genome.wustl.edu	37	2	97530525	97530525	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017789.4	-1	validated	p.Y293	1.000	58	0%	84	23.8%	20	40%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SEMA4C	54910	genome.wustl.edu	37	2	97530615	97530615	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017789.4	-1	validated	p.G263	0.006	45	0%	57	17.5%	23	30.4%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
FAM178B	51252	genome.wustl.edu	37	2	97544229	97544229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122646.2	-1	validated	p.A561V	0.998	49	0%	77	28.6%	2	0%	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
ANKRD36B	57730	genome.wustl.edu	37	2	98195400	98195400	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000258459	-1	known	p.E222*	0.461	344	0%	191	16.8%	1	0%	-	-	-	superfamily_Ankyrin repeat
ZAP70	7535	genome.wustl.edu	37	2	98354267	98354267	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001079.3	+1	reviewed	p.C510	1.000	85	0%	107	16.8%	51	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TMEM131	23505	genome.wustl.edu	37	2	98413430	98413430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015348.1	-1	validated	p.D964Y	1.000	376	0%	268	23.9%	10	10%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
TMEM131	23505	genome.wustl.edu	37	2	98413866	98413866	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015348.1	-1	validated	p.P944	0.016	279	0%	250	20.4%	9	77.7%	-	-	-	NULL
TMEM131	23505	genome.wustl.edu	37	2	98422097	98422097	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015348.1	-1	validated	p.R709*	1.000	272	0%	233	15.9%	3	33.3%	-	-	-	NULL
TMEM131	23505	genome.wustl.edu	37	2	98430736	98430736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015348.1	-1	validated	p.D470N	1.000	256	0%	176	21%	7	14.2%	benign(0.168)	tolerated(1)	neutral(0.015)	NULL
VWA3B	200403	genome.wustl.edu	37	2	98828478	98828478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144992.4	+1	provisional	p.G608V	1.000	207	0%	118	24.6%	5	80%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
CNGA3	1261	genome.wustl.edu	37	2	99012748	99012748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001298.2	+1	reviewed	p.P372L	0.998	64	0%	34	26.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
CNGA3	1261	genome.wustl.edu	37	2	99013139	99013139	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001298.2	+1	reviewed	p.V502	1.000	152	0%	74	16.2%	0	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
INPP4A	3631	genome.wustl.edu	37	2	99136599	99136599	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134224.1	+1	reviewed	p.L30	1.000	28	0%	21	33.3%	4	25%	-	-	-	NULL
INPP4A	3631	genome.wustl.edu	37	2	99198049	99198049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001566.2	+1	reviewed	p.R899W	1.000	261	0.4%	299	20.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MRPL30	51263	genome.wustl.edu	37	2	99811387	99811387	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000409145	+1	known	p.*102	0.022	110	0%	65	21.5%	0	-	-	-	-	NULL
LYG2	254773	genome.wustl.edu	37	2	99858877	99858877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175735.3	-1	reviewed	p.V197I	0.001	207	0%	83	24.1%	0	-	possibly_damaging(0.882)	deleterious(0.03)	deleterious(0.709)	superfamily_SSF53955
EIF5B	9669	genome.wustl.edu	37	2	99993089	99993089	+	Missense_Mutation	SNP	G	G	A	rs149537328	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015904.3	+1	reviewed	p.R611Q	1.000	420	0%	235	25.1%	73	35.6%	benign(0.04)	tolerated(0.28)	neutral(0.034)	NULL
EIF5B	9669	genome.wustl.edu	37	2	100006751	100006751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015904.3	+1	reviewed	p.A825T	1.000	421	0%	273	20.9%	59	42.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
REV1	51455	genome.wustl.edu	37	2	100055196	100055196	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016316.2	-1	reviewed	p.H360	1.000	302	0.3%	118	12.7%	9	22.2%	-	-	-	NULL
CHST10	9486	genome.wustl.edu	37	2	101009888	101009888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004854.3	-1	validated	p.A297D	1.000	342	0%	290	19.3%	5	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Sulfotransfer_2
LOC100288057	100288057	genome.wustl.edu	37	2	101014497	101014497	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342241.1	+1	model	p.E304*	1.000	328	0%	208	22.1%	2	0%	-	-	-	NULL
PDCL3	79031	genome.wustl.edu	37	2	101183040	101183040	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024065.4	+1	validated	p.E28*	1.000	154	0%	164	23.8%	37	18.9%	-	-	-	HMMPfam_Phosducin,superfamily_Thiordxn-like_fd
NPAS2	4862	genome.wustl.edu	37	2	101591324	101591324	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002518.3	+1	reviewed	p.S400	0.000	98	0%	89	23.6%	1	100%	-	-	-	NULL
RFX8	731220	genome.wustl.edu	37	2	102014128	102014128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145664.1	-1	validated	p.P435H	0.988	736	0%	552	22.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MAP4K4	9448	genome.wustl.edu	37	2	102504264	102504264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145686.2	+1	reviewed	p.A1202T	1.000	492	0%	207	20.8%	87	24.1%	unknown(0)	deleterious(0.04)	-	HMMPfam_CNH,HMMSmart_SM00036
IL1R2	7850	genome.wustl.edu	37	2	102626214	102626214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004633.3	+1	reviewed	p.M86I	0.000	132	0%	66	27.3%	11	54.5%	benign(0.001)	tolerated(0.88)	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
IL1RL2	8808	genome.wustl.edu	37	2	102842396	102842396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003854.2	+1	reviewed	p.A344T	0.000	445	0%	260	15.8%	2	100%	benign(0.418)	tolerated(1)	neutral(0.136)	NULL
IL1RL2	8808	genome.wustl.edu	37	2	102849540	102849540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003854.2	+1	reviewed	p.G418V	1.000	323	0%	206	10.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
IL18R1	8809	genome.wustl.edu	37	2	102984394	102984394	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003855.2	+1	reviewed	p.W56*	0.150	411	0%	237	21.1%	0	-	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
SLC9A2	6549	genome.wustl.edu	37	2	103321059	103321059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003048.3	+1	validated	p.K634N	1.000	234	0%	176	23.9%	0	-	probably_damaging(0.975)	tolerated(0.39)	neutral(0.433)	NULL
TMEM182	130827	genome.wustl.edu	37	2	103431357	103431357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144632.3	+1	validated	p.G207V	0.998	463	0.6%	227	27.3%	4	75%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GPR45	11250	genome.wustl.edu	37	2	105859405	105859405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007227.3	+1	reviewed	p.V364M	1.000	51	0%	73	19.2%	0	-	probably_damaging(0.957)	deleterious(0.03)	deleterious(0.765)	NULL
TGFBRAP1	9392	genome.wustl.edu	37	2	105889460	105889460	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142621.1	-1	validated	p.Y608	0.998	66	0%	69	18.8%	7	42.8%	-	-	-	NULL
TGFBRAP1	9392	genome.wustl.edu	37	2	105924376	105924376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142621.1	-1	validated	p.P128H	0.999	59	0%	63	23.8%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C2orf49	79074	genome.wustl.edu	37	2	105956175	105956175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024093.1	+1	provisional	p.E79K	0.998	350	0%	296	24%	19	36.8%	possibly_damaging(0.646)	tolerated(0.62)	neutral(0.231)	NULL
UXS1	80146	genome.wustl.edu	37	2	106761713	106761713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025076.3	-1	validated	p.E130D	1.000	142	0%	72	26.4%	23	39.1%	benign(0.002)	tolerated(0.22)	neutral(0.042)	HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains
RGPD3	653489	genome.wustl.edu	37	2	107040421	107040421	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144013.1	-1	validated	p.Y1334*	1.000	321	0%	98	10.2%	4	0%	-	-	-	superfamily_SSF50729
SLC5A7	60482	genome.wustl.edu	37	2	108604648	108604648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021815.2	+1	provisional	p.V13M	0.987	310	0%	421	20.4%	0	-	benign(0.011)	deleterious(0.03)	neutral(0.365)	NULL
SLC5A7	60482	genome.wustl.edu	37	2	108604723	108604723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021815.2	+1	provisional	p.R38C	1.000	221	0%	319	14.7%	0	-	possibly_damaging(0.904)	deleterious(0.05)	deleterious(0.704)	NULL
SLC5A7	60482	genome.wustl.edu	37	2	108622637	108622637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021815.2	+1	provisional	p.G292R	1.000	98	0%	92	22.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SSF
SULT1C4	27233	genome.wustl.edu	37	2	109002649	109002649	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006588.2	+1	reviewed	p.N206I	1.000	114	0%	91	22%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
GCC2	9648	genome.wustl.edu	37	2	109099550	109099550	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181453.3	+1	reviewed	p.E1126D	0.990	264	0%	100	22%	5	40%	possibly_damaging(0.672)	-	-	NULL
CCDC138	165055	genome.wustl.edu	37	2	109492608	109492608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144978.1	+1	provisional	p.T633A	0.965	301	0%	119	24.4%	11	36.3%	benign(0.005)	tolerated(0.39)	neutral(0.016)	NULL
SH3RF3	344558	genome.wustl.edu	37	2	110065767	110065767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000309415	+1	known	p.P657L	0.689	122	0%	66	10.6%	4	75%	benign(0.059)	tolerated(0.07)	neutral(0.323)	NULL
SH3RF3	344558	genome.wustl.edu	37	2	110259198	110259198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000309415	+1	known	p.R867W	0.997	53	0%	50	30%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
SOWAHC	65124	genome.wustl.edu	37	2	110373589	110373589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023016.3	+1	validated	p.P508H	0.002	58	0%	112	21.4%	2	50%	benign(0.312)	tolerated(0.13)	neutral(0.350)	NULL
NPHP1	4867	genome.wustl.edu	37	2	110922126	110922126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000272.3	-1	reviewed	p.I304V	0.000	193	0%	70	12.9%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
BUB1	699	genome.wustl.edu	37	2	111414656	111414656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004336.3	-1	reviewed	p.T552I	1.000	486	0%	159	22%	23	43.4%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112541937	112541937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022662.2	-1	validated	p.A1653V	1.000	414	0%	285	17.9%	5	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
FBLN7	129804	genome.wustl.edu	37	2	112917274	112917274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153214.2	+1	validated	p.L33I	1.000	40	0%	51	27.5%	0	-	benign(0.081)	tolerated(0.06)	neutral(0.329)	NULL
ZC3H6	376940	genome.wustl.edu	37	2	113082183	113082183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198581.2	+1	validated	p.D599N	1.000	111	0%	59	23.7%	0	-	possibly_damaging(0.767)	deleterious(0)	deleterious(0.729)	NULL
ZC3H6	376940	genome.wustl.edu	37	2	113088835	113088835	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198581.2	+1	validated	p.R780	1.000	157	0%	92	30.4%	1	100%	-	-	-	NULL
RGPD8	727851	genome.wustl.edu	37	2	113147667	113147667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000302558	-1	known	p.R952M	0.005	1014	0%	366	27%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
TTL	150465	genome.wustl.edu	37	2	113251761	113251761	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153712.4	+1	validated	p.W93*	1.000	105	0%	109	23.9%	5	40%	-	-	-	HMMPfam_TTL
TTL	150465	genome.wustl.edu	37	2	113260562	113260562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153712.4	+1	validated	p.P227T	1.000	367	0%	291	14.4%	3	33.3%	possibly_damaging(0.829)	tolerated(0.12)	deleterious(0.575)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
POLR1B	84172	genome.wustl.edu	37	2	113304604	113304604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019014.4	+1	validated	p.E65K	1.000	315	0%	305	23.6%	5	20%	probably_damaging(0.979)	tolerated(0.08)	deleterious(0.722)	HMMPfam_RNA_pol_Rpb2_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR1B	84172	genome.wustl.edu	37	2	113332502	113332502	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019014.4	+1	validated	p.C868	1.000	289	0%	96	30.2%	16	62.5%	-	-	-	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
IL1B	3553	genome.wustl.edu	37	2	113590270	113590270	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000576.2	-1	reviewed	p.L145	0.841	488	0%	361	18.6%	8	0%	-	-	-	HMMPfam_IL1,HMMSmart_IL1,superfamily_Cytok_IL1_like
PAX8	7849	genome.wustl.edu	37	2	114002147	114002147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003466.3	-1	reviewed	p.K82N	1.000	145	0%	103	20.4%	191	44.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like
RABL2A	11159	genome.wustl.edu	37	2	114391739	114391739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007082.3	+1	reviewed	p.Q49H	1.000	392	0%	388	17.8%	13	15.3%	probably_damaging(0.982)	tolerated(0.29)	neutral(0.456)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC645529	645529	genome.wustl.edu	37	2	114425539	114425539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001716670.2	-1	model	p.S195R	1.000	109	0%	95	21.1%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
SLC35F5	80255	genome.wustl.edu	37	2	114483076	114483076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025181.2	-1	provisional	p.G377C	1.000	271	0%	124	25%	30	6.6%	possibly_damaging(0.869)	tolerated(0.07)	deleterious(0.656)	NULL
SLC35F5	80255	genome.wustl.edu	37	2	114508022	114508022	+	Missense_Mutation	SNP	G	G	A	rs184692931	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025181.2	-1	provisional	p.R133C	1.000	200	0%	221	22.2%	15	73.3%	benign(0.042)	deleterious(0.01)	neutral(0.408)	superfamily_Multidrug resistance efflux transporter EmrE
DPP10	57628	genome.wustl.edu	37	2	116497362	116497362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020868.3	+1	validated	p.E249K	1.000	318	0%	65	24.6%	0	-	probably_damaging(0.954)	tolerated(0.83)	neutral(0.398)	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
DPP10	57628	genome.wustl.edu	37	2	116598326	116598326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020868.3	+1	validated	p.T728I	1.000	410	0%	368	19.8%	0	-	possibly_damaging(0.911)	deleterious(0.01)	deleterious(0.768)	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
INSIG2	51141	genome.wustl.edu	37	2	118854204	118854204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016133.2	+1	reviewed	p.Q24H	0.999	369	0.3%	241	24.9%	5	20%	benign(0)	deleterious(0.05)	neutral(0.345)	NULL
INSIG2	51141	genome.wustl.edu	37	2	118864368	118864368	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016133.2	+1	reviewed	p.I142S	1.000	694	0%	246	24%	19	26.3%	benign(0.071)	deleterious(0.01)	neutral(0.411)	HMMPfam_INSIG
C2orf76	130355	genome.wustl.edu	37	2	120097437	120097437	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017927.2	-1	predicted	p.Q33H	1.000	300	0%	174	13.8%	12	8.3%	benign(0.28)	tolerated(0.17)	neutral(0.145)	HMMPfam_DUF2340
SCTR	6344	genome.wustl.edu	37	2	120204400	120204400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002980.2	-1	reviewed	p.A359T	0.998	190	0.5%	100	19%	1	0%	benign(0.155)	deleterious(0.02)	neutral(0.397)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
ENSG00000163075	0	genome.wustl.edu	37	2	120404582	120404582	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000443972	+1	known	p.S317Y	0.000	275	0%	229	10.9%	1	0%	-	-	-	NULL
PTPN4	5775	genome.wustl.edu	37	2	120690015	120690015	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002830.2	+1	reviewed	p.P362	0.816	168	0%	108	23.1%	1	100%	-	-	-	HMMPfam_FA,superfamily_SSF50729
RALB	5899	genome.wustl.edu	37	2	121043570	121043570	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002881.2	+1	reviewed	p.R79*	0.997	325	0%	136	22.8%	21	4.7%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CLASP1	23332	genome.wustl.edu	37	2	122120748	122120748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015282.2	-1	validated	p.E1402D	1.000	316	0.3%	340	20.6%	8	25%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_ARM repeat
CLASP1	23332	genome.wustl.edu	37	2	122159131	122159131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015282.2	-1	validated	p.L952I	1.000	275	0%	113	18.6%	7	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
CNTNAP5	129684	genome.wustl.edu	37	2	125284881	125284881	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130773.2	+1	reviewed	p.T498	1.000	439	0%	130	20.8%	0	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
CNTNAP5	129684	genome.wustl.edu	37	2	125521304	125521304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130773.2	+1	reviewed	p.V763I	1.000	393	0%	97	10.3%	0	-	benign(0.043)	tolerated(0.25)	neutral(0.040)	superfamily_ConA_like_lec_gl
CNTNAP5	129684	genome.wustl.edu	37	2	125521656	125521656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130773.2	+1	reviewed	p.T821N	1.000	470	0%	128	16.4%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
CNTNAP5	129684	genome.wustl.edu	37	2	125669091	125669091	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130773.2	+1	reviewed	p.R1234*	0.924	334	0.3%	48	27.1%	0	-	-	-	-	NULL
BIN1	274	genome.wustl.edu	37	2	127827579	127827579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139343.1	-1	reviewed	p.D135N	1.000	117	0%	122	18.9%	135	37.7%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_BAR,HMMSmart_SM00721
ERCC3	2071	genome.wustl.edu	37	2	128038130	128038130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000122.1	-1	reviewed	p.D474Y	1.000	118	0%	51	27.5%	25	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ERCC3	2071	genome.wustl.edu	37	2	128044391	128044391	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000122.1	-1	reviewed	p.Y410	1.000	137	0%	89	21.3%	35	28.5%	-	-	-	HMMPfam_ResIII,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ERCC3	2071	genome.wustl.edu	37	2	128051107	128051107	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000122.1	-1	reviewed	p.T72	0.944	119	0%	154	24%	20	40%	-	-	-	NULL
MAP3K2	10746	genome.wustl.edu	37	2	128096605	128096605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006609.3	-1	reviewed	p.S9L	1.000	361	0%	194	23.2%	3	66.6%	benign(0.072)	tolerated(0.12)	neutral(0.266)	NULL
MYO7B	4648	genome.wustl.edu	37	2	128321787	128321787	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080527.1	+1	provisional	p.G26	0.945	223	0%	104	11.5%	0	-	-	-	-	NULL
MYO7B	4648	genome.wustl.edu	37	2	128390929	128390929	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080527.1	+1	provisional	p.D1808	1.000	56	0%	63	14.3%	0	-	-	-	-	HMMSmart_SM00295
MYO7B	4648	genome.wustl.edu	37	2	128394135	128394135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080527.1	+1	provisional	p.S2021P	0.671	124	0%	142	22.5%	0	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	NULL
WDR33	55339	genome.wustl.edu	37	2	128466385	128466385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018383.3	-1	reviewed	p.R1216L	1.000	175	0%	214	24.3%	39	58.9%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
WDR33	55339	genome.wustl.edu	37	2	128467397	128467397	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018383.3	-1	reviewed	p.G1114	0.970	63	0%	72	15.3%	15	33.3%	-	-	-	NULL
WDR33	55339	genome.wustl.edu	37	2	128471170	128471170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018383.3	-1	reviewed	p.R1099C	1.000	69	0%	59	28.8%	24	54.1%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
WDR33	55339	genome.wustl.edu	37	2	128477378	128477378	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018383.3	-1	reviewed	p.Q741*	1.000	86	0%	67	17.9%	27	7.4%	-	-	-	HMMPfam_Collagen
SAP130	79595	genome.wustl.edu	37	2	128699597	128699597	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024545.3	-1	validated	p.R1044*	1.000	565	0%	202	17.8%	29	24.1%	-	-	-	NULL
SAP130	79595	genome.wustl.edu	37	2	128712587	128712587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024545.3	-1	validated	p.P790S	1.000	420	0%	163	17.8%	17	52.9%	unknown(0)	deleterious(0.03)	-	NULL
SAP130	79595	genome.wustl.edu	37	2	128747416	128747416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024545.3	-1	validated	p.A527V	1.000	201	0%	118	19.5%	15	20%	possibly_damaging(0.903)	deleterious(0.03)	deleterious(0.722)	NULL
UGGT1	56886	genome.wustl.edu	37	2	128935439	128935439	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020120.3	+1	validated	p.L1220M	0.994	694	0%	236	20.3%	17	29.4%	possibly_damaging(0.934)	deleterious(0.01)	deleterious(0.786)	NULL
HS6ST1	9394	genome.wustl.edu	37	2	129026165	129026165	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004807.2	-1	reviewed	p.P269	0.994	70	0%	64	9.4%	41	43.9%	-	-	-	HMMPfam_HS6ST
RAB6C	84084	genome.wustl.edu	37	2	130738182	130738182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032144.2	+1	validated	p.Q165R	1.000	1135	0%	1183	16.9%	1	0%	possibly_damaging(0.679)	tolerated(0.11)	deleterious(0.514)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
POTEF	728378	genome.wustl.edu	37	2	130832969	130832969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099771.2	-1	validated	p.K692N	0.002	380	0%	256	20.3%	0	-	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	NULL
POTEF	728378	genome.wustl.edu	37	2	130859740	130859740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099771.2	-1	validated	p.K380N	0.013	898	0%	445	15.5%	0	-	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
POTEF	728378	genome.wustl.edu	37	2	130878082	130878082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099771.2	-1	validated	p.V3I	0.033	328	0%	445	16.4%	0	-	benign(0.01)	deleterious(0.01)	neutral(0.406)	NULL
SMPD4	55627	genome.wustl.edu	37	2	130910182	130910182	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000439886	-1	known	p.S724Y	0.996	58	0%	31	22.6%	80	45%	-	-	-	NULL
TUBA3E	112714	genome.wustl.edu	37	2	130951988	130951988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207312.2	-1	validated	p.G143S	1.000	242	0%	269	11.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin_FtsZ
PTPN18	26469	genome.wustl.edu	37	2	131117066	131117066	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014369.3	+1	reviewed	e4+1	1.000	264	0%	336	23.2%	0	-	-	-	-	-
LOC653269	653269	genome.wustl.edu	37	2	131221193	131221193	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_928585.2	-1	model	p.A808	0.999	93	0%	89	16.9%	455	0.2%	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,superfamily_Actin-like ATPase domain
GPR148	344561	genome.wustl.edu	37	2	131487605	131487605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207364.2	+1	validated	p.S294Y	0.001	64	0%	98	12.2%	0	-	benign(0.082)	tolerated(0.08)	neutral(0.306)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM123C	205147	genome.wustl.edu	37	2	131520582	131520582	+	Missense_Mutation	SNP	G	G	A	rs190739558	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105193.1	+1	validated	p.V313M	0.835	26	0%	28	28.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_WTX
FAM168B	130074	genome.wustl.edu	37	2	131812989	131812989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009993.2	-1	validated	p.A111S	1.000	319	0%	214	19.6%	34	29.4%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	NULL
POTEE	445582	genome.wustl.edu	37	2	132020988	132020988	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083538.1	+1	validated	p.E654*	0.198	172	0%	129	18.6%	0	-	-	-	-	NULL
TUBA3D	113457	genome.wustl.edu	37	2	132237698	132237698	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080386.2	+1	validated	p.G144	1.000	225	0%	275	18.2%	1	100%	-	-	-	HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin nucleotide-binding domain-like
LOC100289293	100289293	genome.wustl.edu	37	2	132724289	132724289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342261.1	-1	model	p.P18H	0.030	53	0%	75	25.3%	0	-	-	-	-	NULL
ENSG00000202174	0	genome.wustl.edu	37	2	133010761	133010761	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000365304	-1	novel	NULL	1.000	26	0%	40	25%	0	-	-	-	-	-
GPR39	2863	genome.wustl.edu	37	2	133175068	133175068	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001508.2	+1	validated	p.Q151	0.998	113	0%	114	19.3%	11	63.6%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NCKAP5	344148	genome.wustl.edu	37	2	133538789	133538789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207363.2	-1	validated	p.A1629T	1.000	377	0%	187	11.2%	0	-	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	NULL
NCKAP5	344148	genome.wustl.edu	37	2	133542951	133542951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207363.2	-1	validated	p.A478V	0.940	122	0%	87	18.4%	0	-	benign(0.017)	deleterious(0)	neutral(0.445)	NULL
NCKAP5	344148	genome.wustl.edu	37	2	133543089	133543089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207363.2	-1	validated	p.S432L	1.000	272	0%	162	17.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MGAT5	4249	genome.wustl.edu	37	2	135102552	135102552	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002410.3	+1	validated	p.D343	1.000	394	0%	92	21.7%	5	60%	-	-	-	NULL
MGAT5	4249	genome.wustl.edu	37	2	135206232	135206232	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002410.3	+1	validated	p.T680	0.827	139	0%	84	10.7%	10	40%	-	-	-	NULL
CCNT2	905	genome.wustl.edu	37	2	135711069	135711069	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_058241.1	+1	reviewed	p.H348	1.000	301	0%	180	23.9%	12	33.3%	-	-	-	NULL
CCNT2	905	genome.wustl.edu	37	2	135712145	135712145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_058241.1	+1	reviewed	p.S707N	1.000	274	0%	135	14.8%	8	25%	possibly_damaging(0.711)	deleterious(0.02)	deleterious(0.640)	NULL
YSK4	80122	genome.wustl.edu	37	2	135738884	135738884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025052.3	-1	validated	p.V1143I	1.000	289	0%	196	18.9%	0	-	benign(0.32)	deleterious(0.05)	neutral(0.446)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RAB3GAP1	22930	genome.wustl.edu	37	2	135893168	135893168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012233.2	+1	reviewed	p.R530H	1.000	179	0%	87	28.7%	16	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RAB3GAP1	22930	genome.wustl.edu	37	2	135908029	135908029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012233.2	+1	reviewed	p.A672T	1.000	107	0%	49	16.3%	35	28.5%	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	NULL
R3HDM1	23518	genome.wustl.edu	37	2	136473140	136473140	+	Silent	SNP	C	C	T	rs115242070	byFrequency;by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015361.2	+1	provisional	p.S884	0.879	448	0.2%	349	22.9%	18	61.1%	-	-	-	NULL
LCT	3938	genome.wustl.edu	37	2	136562531	136562531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002299.2	-1	reviewed	p.V1424M	0.994	146	0%	81	21%	0	-	benign(0.234)	deleterious(0.03)	neutral(0.388)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
LCT	3938	genome.wustl.edu	37	2	136575291	136575291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002299.2	-1	reviewed	p.L443I	1.000	23	0%	24	29.2%	0	-	benign(0.353)	tolerated(0.31)	neutral(0.139)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
LCT	3938	genome.wustl.edu	37	2	136581489	136581489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002299.2	-1	reviewed	p.L297F	0.271	546	0%	315	20.6%	0	-	benign(0.004)	deleterious(0)	neutral(0.445)	superfamily_Glyco_hydro_cat
MCM6	4175	genome.wustl.edu	37	2	136614298	136614298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005915.4	-1	reviewed	p.E542D	1.000	326	0%	116	19%	49	0%	possibly_damaging(0.505)	deleterious(0.02)	deleterious(0.552)	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
DARS	1615	genome.wustl.edu	37	2	136678117	136678117	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001349.2	-1	validated	p.L289	1.000	435	0%	145	15.2%	113	30%	-	-	-	HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases
LOC100131316	100131316	genome.wustl.edu	37	2	136742884	136742884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001717835.2	+1	model	p.P119H	0.000	20	0.000	9	0.444	0	-	-	-	-	NULL
CXCR4	7852	genome.wustl.edu	37	2	136872637	136872637	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008540.1	-1	reviewed	p.T291	0.021	262	0%	252	21%	51	13.7%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
THSD7B	80731	genome.wustl.edu	37	2	137852566	137852566	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080427.1	+1	provisional	p.L327	0.885	283	0%	80	25%	1	0%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
THSD7B	80731	genome.wustl.edu	37	2	138434154	138434154	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080427.1	+1	provisional	p.Y1571	1.000	410	0%	276	24.6%	1	0%	-	-	-	NULL
LRP1B	53353	genome.wustl.edu	37	2	141128815	141128815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018557.2	-1	validated	p.S3603I	1.000	102	0%	35	14.3%	0	-	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
LRP1B	53353	genome.wustl.edu	37	2	141135779	141135779	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018557.2	-1	validated	p.G3536	1.000	379	0%	96	24%	0	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP1B	53353	genome.wustl.edu	37	2	141245223	141245223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018557.2	-1	validated	p.R3069H	1.000	257	0%	126	19.8%	0	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141607802	141607802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018557.2	-1	validated	p.P1603H	1.000	473	0%	185	27.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141625722	141625722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018557.2	-1	validated	p.P1427L	1.000	183	0%	84	26.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	142012130	142012130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018557.2	-1	validated	p.D142N	0.879	687	0%	182	20.9%	0	-	possibly_damaging(0.888)	tolerated(0.56)	neutral(0.354)	HMMSmart_EGF,PatternScan_EGF_2,superfamily_SSF57196
KYNU	8942	genome.wustl.edu	37	2	143798196	143798196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003937.2	+1	reviewed	p.V414A	0.290	118	0%	43	34.9%	53	47.1%	benign(0.164)	deleterious(0.04)	neutral(0.364)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
MBD5	55777	genome.wustl.edu	37	2	149243369	149243369	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000416015	+1	known	p.R941H	0.982	199	0%	100	23%	4	0%	-	-	-	NULL
MBD5	55777	genome.wustl.edu	37	2	149247398	149247398	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018328.4	+1	reviewed	p.L1166	0.970	193	0.5%	146	28.8%	7	28.5%	-	-	-	NULL
EPC2	26122	genome.wustl.edu	37	2	149528735	149528735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015630.3	+1	validated	p.T500I	1.000	150	0%	66	24.2%	7	71.4%	probably_damaging(0.997)	deleterious(0.05)	deleterious(0.811)	NULL
KIF5C	3800	genome.wustl.edu	37	2	149866663	149866663	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000435030	+1	known	p.N855	0.910	50	0%	31	16.1%	0	-	-	-	-	NULL
RIF1	55183	genome.wustl.edu	37	2	152276748	152276748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018151.4	+1	reviewed	p.R183M	1.000	342	0%	214	20.6%	1	0%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	superfamily_ARM repeat
RIF1	55183	genome.wustl.edu	37	2	152302974	152302974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018151.4	+1	reviewed	p.E710G	1.000	307	0%	283	19.4%	1	100%	possibly_damaging(0.832)	deleterious(0.01)	deleterious(0.723)	superfamily_ARM repeat
NEB	4703	genome.wustl.edu	37	2	152346553	152346553	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004543.4	-1	reviewed	p.R6590*	1.000	956	0%	298	18.8%	1	0%	-	-	-	superfamily_SH3-domain
NEB	4703	genome.wustl.edu	37	2	152350689	152350689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004543.4	-1	reviewed	p.E6333K	1.000	689	0%	230	21.3%	0	-	probably_damaging(0.982)	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152374876	152374876	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004543.4	-1	reviewed	p.L5885	1.000	778	0.1%	194	22.7%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152393702	152393702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004543.4	-1	reviewed	p.A5350T	1.000	264	0%	66	21.2%	0	-	possibly_damaging(0.625)	tolerated(0.25)	neutral(0.255)	HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152447932	152447932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000427231	-1	known	p.T246I	0.891	1149	0%	231	13%	0	-	unknown(0)	-	-	NULL
NEB	4703	genome.wustl.edu	37	2	152484106	152484106	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004543.4	-1	reviewed	p.H3115	1.000	363	0%	131	27.5%	0	-	-	-	-	HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152495895	152495895	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000397342	-1	known	p.L1692V	0.089	571	0%	334	14.7%	0	-	possibly_damaging(0.793)	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152499702	152499702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004543.4	-1	reviewed	p.M2708V	0.999	403	0%	130	30%	0	-	benign(0.001)	tolerated(0.35)	neutral(0.021)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152521924	152521924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004543.4	-1	reviewed	p.E1721K	0.967	707	0%	300	23.7%	0	-	possibly_damaging(0.673)	tolerated(0.25)	neutral(0.276)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152536330	152536330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004543.4	-1	reviewed	p.A1054T	0.975	281	0%	149	27.5%	0	-	benign(0)	tolerated(0.6)	neutral(0.004)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152537332	152537332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004543.4	-1	reviewed	p.R985H	1.000	543	0%	259	23.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152543981	152543981	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004543.4	-1	reviewed	p.D863	0.774	638	0.2%	276	15.9%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152579900	152579900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004543.4	-1	reviewed	p.S238I	1.000	301	0%	138	23.2%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Nebulin,HMMSmart_SM00227
STAM2	10254	genome.wustl.edu	37	2	152982828	152982828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005843.4	-1	reviewed	p.L364S	1.000	194	0%	69	17.4%	13	23%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STAM2	10254	genome.wustl.edu	37	2	152982844	152982844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005843.4	-1	reviewed	p.E359K	1.000	182	0%	71	22.5%	16	31.2%	benign(0.004)	tolerated(0.22)	neutral(0.042)	NULL
FMNL2	114793	genome.wustl.edu	37	2	153494188	153494188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052905.3	+1	reviewed	p.K982N	1.000	563	0.4%	216	19%	18	0%	possibly_damaging(0.88)	tolerated(0.09)	deleterious(0.639)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
PRPF40A	55660	genome.wustl.edu	37	2	153519200	153519200	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017892.3	-1	validated	p.F747V	1.000	191	0%	96	18.8%	75	48%	benign(0.429)	tolerated(1)	neutral(0.140)	HMMPfam_FF,HMMSmart_SM00441,superfamily_FF domain
GALNT13	114805	genome.wustl.edu	37	2	155115621	155115621	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052917.2	+1	validated	p.W315*	1.000	464	0%	216	21.3%	0	-	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
GALNT13	114805	genome.wustl.edu	37	2	155252578	155252578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052917.2	+1	validated	p.S411Y	1.000	307	0%	288	16.7%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_Nucleotide-diphospho-sugar transferases
KCNJ3	3760	genome.wustl.edu	37	2	155555690	155555690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002239.2	+1	reviewed	p.L135I	1.000	144	0%	148	22.3%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_IRK,superfamily_SSF81324
NR4A2	4929	genome.wustl.edu	37	2	157184464	157184464	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006186.3	-1	reviewed	p.Q353*	1.000	93	0%	151	23.8%	3	0%	-	-	-	superfamily_Nuclear receptor ligand-binding domain
GPD2	2820	genome.wustl.edu	37	2	157407203	157407203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000408.4	+1	reviewed	p.A306S	0.000	233	0%	56	14.3%	4	25%	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain
CYTIP	9595	genome.wustl.edu	37	2	158283897	158283897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004288.4	-1	reviewed	p.R171I	0.962	295	0.7%	162	29%	27	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	superfamily_PDZ
CYTIP	9595	genome.wustl.edu	37	2	158290933	158290933	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004288.4	-1	reviewed	p.K76	0.998	276	0%	185	11.9%	25	0%	-	-	-	superfamily_PDZ
ACVR1C	130399	genome.wustl.edu	37	2	158412762	158412762	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145259.2	-1	validated	p.A129	0.519	350	0%	300	26.7%	0	-	-	-	-	NULL
CCDC148	130940	genome.wustl.edu	37	2	159077162	159077162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138803.3	-1	validated	p.R439C	1.000	690	0%	351	19.9%	6	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TANC1	85461	genome.wustl.edu	37	2	160019807	160019807	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033394.2	+1	validated	p.S232R	1.000	127	0%	43	14%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TANC1	85461	genome.wustl.edu	37	2	160028639	160028639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033394.2	+1	validated	p.D453E	0.985	318	0%	101	19.8%	4	50%	benign(0.164)	tolerated(0.43)	neutral(0.028)	NULL
TANC1	85461	genome.wustl.edu	37	2	160035500	160035500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033394.2	+1	validated	p.A779D	1.000	86	0%	44	25%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TANC1	85461	genome.wustl.edu	37	2	160076249	160076249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033394.2	+1	validated	p.S1183R	1.000	213	0%	104	21.2%	3	33.3%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
WDSUB1	151525	genome.wustl.edu	37	2	160136331	160136331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128212.1	-1	validated	p.S175N	1.000	212	0%	244	21.7%	6	66.6%	benign(0.001)	tolerated(0.43)	neutral(0.013)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
BAZ2B	29994	genome.wustl.edu	37	2	160289462	160289462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013450.2	-1	validated	p.S569I	1.000	530	0%	283	19.8%	2	100%	possibly_damaging(0.77)	deleterious(0.01)	deleterious(0.692)	NULL
LY75	4065	genome.wustl.edu	37	2	160755550	160755550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002349.2	-1	validated	p.V39I	0.764	133	0%	125	23.2%	5	0%	benign(0.005)	tolerated(0.64)	neutral(0.003)	HMMSmart_SM00458,superfamily_Ricin B-like lectins
PLA2R1	22925	genome.wustl.edu	37	2	160873152	160873152	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007366.3	-1	validated	p.L508	0.663	237	0%	107	24.3%	0	-	-	-	-	NULL
PLA2R1	22925	genome.wustl.edu	37	2	160879250	160879250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007366.3	-1	validated	p.Q407R	0.863	379	0%	170	17.6%	0	-	possibly_damaging(0.681)	tolerated(0.49)	neutral(0.254)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
ITGB6	3694	genome.wustl.edu	37	2	161030548	161030548	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000888.3	-1	provisional	p.I232M	0.998	331	0%	140	25.7%	1	100%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like
RBMS1	5937	genome.wustl.edu	37	2	161138785	161138785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000392753	-1	known	p.R278W	1.000	472	0.2%	246	22.4%	3	0%	probably_damaging(0.982)	tolerated(0.16)	deleterious(0.486)	NULL
RBMS1	5937	genome.wustl.edu	37	2	161159874	161159874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016836.3	-1	reviewed	p.S176Y	1.000	351	0%	67	29.9%	18	27.7%	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PSMD14	10213	genome.wustl.edu	37	2	162242049	162242049	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005805.4	+1	validated	p.S179	1.000	251	0%	36	19.4%	220	40.4%	-	-	-	NULL
SLC4A10	57282	genome.wustl.edu	37	2	162711558	162711558	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022058.3	+1	reviewed	p.H165	1.000	341	0%	296	23.3%	0	-	-	-	-	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
DPP4	1803	genome.wustl.edu	37	2	162902047	162902047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001935.3	-1	reviewed	p.V121M	0.998	287	0%	89	19.1%	21	52.3%	benign(0.006)	tolerated(0.12)	neutral(0.261)	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
IFIH1	64135	genome.wustl.edu	37	2	163130406	163130406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022168.2	-1	reviewed	p.L785M	1.000	415	0.5%	253	14.6%	100	29%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
IFIH1	64135	genome.wustl.edu	37	2	163134170	163134170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022168.2	-1	reviewed	p.C600Y	1.000	485	0.2%	211	26.5%	68	47%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	superfamily_P-loop containing nucleoside triphosphate hydrolases
KCNH7	90134	genome.wustl.edu	37	2	163280026	163280026	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033272.2	-1	reviewed	p.I658M	1.000	359	0%	85	25.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KCNH7	90134	genome.wustl.edu	37	2	163393434	163393434	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033272.2	-1	reviewed	e3+1	1.000	423	0%	162	17.9%	0	-	-	-	-	-
FIGN	55137	genome.wustl.edu	37	2	164466900	164466900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018086.2	-1	validated	p.P481H	1.000	431	0%	144	20.1%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_SSF52540
COBLL1	22837	genome.wustl.edu	37	2	165551071	165551071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014900.3	-1	validated	p.A982D	0.000	200	0%	88	25%	7	57.1%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
COBLL1	22837	genome.wustl.edu	37	2	165551336	165551336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014900.3	-1	validated	p.R894W	0.018	114	0%	60	16.7%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
COBLL1	22837	genome.wustl.edu	37	2	165552067	165552067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014900.3	-1	validated	p.S650N	0.536	528	0%	249	26.1%	3	0%	benign(0.273)	tolerated(0.12)	neutral(0.290)	NULL
COBLL1	22837	genome.wustl.edu	37	2	165557165	165557165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014900.3	-1	validated	p.D482N	0.002	365	0.3%	168	28%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SLC38A11	151258	genome.wustl.edu	37	2	165802190	165802190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173512.1	-1	provisional	p.D37Y	0.998	275	0%	163	22.1%	0	-	benign(0.023)	tolerated(1)	neutral(0.001)	NULL
SCN3A	6328	genome.wustl.edu	37	2	165970393	165970393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006922.3	-1	reviewed	p.S1201I	1.000	292	0%	166	20.5%	0	-	benign(0.008)	tolerated(0.32)	neutral(0.024)	HMMPfam_Na_trans_assoc,superfamily_SSF81324
SCN3A	6328	genome.wustl.edu	37	2	165986551	165986551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006922.3	-1	reviewed	p.C941R	1.000	602	0%	204	16.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN2A	6326	genome.wustl.edu	37	2	166243300	166243300	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040142.1	+1	reviewed	p.V1532	1.000	397	0%	112	15.2%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
TTC21B	79809	genome.wustl.edu	37	2	166767906	166767906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024753.3	-1	validated	p.L798F	1.000	438	0.2%	238	23.9%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00028,superfamily_TPR-like
TTC21B	79809	genome.wustl.edu	37	2	166771815	166771815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024753.3	-1	validated	p.Q678H	0.576	246	0%	119	24.4%	5	60%	benign(0.062)	deleterious(0.01)	neutral(0.410)	HMMSmart_SM00028,superfamily_TPR-like
SCN1A	6323	genome.wustl.edu	37	2	166900388	166900388	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006920.4	-1	reviewed	p.R612*	0.993	319	0%	105	27.6%	0	-	-	-	-	NULL
SCN9A	6335	genome.wustl.edu	37	2	167055444	167055444	+	Missense_Mutation	SNP	C	C	T	rs180949263	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002977.3	-1	reviewed	p.R1891H	0.985	365	0%	377	25.7%	0	-	benign(0.016)	deleterious(0.01)	neutral(0.406)	HMMPfam_IQ,HMMSmart_SM00015
SCN9A	6335	genome.wustl.edu	37	2	167159638	167159638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002977.3	-1	reviewed	p.S288N	0.000	454	0%	290	21%	0	-	benign(0)	tolerated(0.58)	neutral(0.005)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN9A	6335	genome.wustl.edu	37	2	167160759	167160759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002977.3	-1	reviewed	p.S226Y	1.000	508	0%	299	24.4%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167262938	167262938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002976.2	-1	validated	p.N1401D	1.000	312	0%	82	23.2%	0	-	probably_damaging(0.986)	tolerated(0.14)	deleterious(0.684)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167334105	167334105	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002976.2	-1	validated	p.E34	0.849	259	0%	161	22.4%	0	-	-	-	-	NULL
XIRP2	129446	genome.wustl.edu	37	2	167992435	167992435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152381.4	+1	validated	p.R142Q	1.000	187	0%	42	23.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168099097	168099097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152381.4	+1	validated	p.E399K	0.901	143	0%	78	19.2%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168101750	168101750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152381.4	+1	validated	p.S1283Y	1.000	347	0%	146	22.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Xin
XIRP2	129446	genome.wustl.edu	37	2	168103747	168103747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152381.4	+1	validated	p.A1949T	0.001	60	0%	35	17.1%	0	-	benign(0.024)	tolerated(0.11)	neutral(0.273)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168104633	168104633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152381.4	+1	validated	p.T2244N	0.572	141	0%	68	20.6%	0	-	possibly_damaging(0.84)	tolerated(0.06)	deleterious(0.644)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168104686	168104686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152381.4	+1	validated	p.G2262C	0.998	124	0%	56	21.4%	0	-	benign(0.063)	deleterious(0.01)	neutral(0.410)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168105285	168105285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152381.4	+1	validated	p.K2461N	0.006	218	0%	100	21%	0	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168107388	168107388	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152381.4	+1	validated	p.K3162N	0.007	155	0%	55	21.8%	0	-	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
B3GALT1	8708	genome.wustl.edu	37	2	168725599	168725599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020981.2	+1	reviewed	p.A17V	1.000	294	0%	226	10.2%	0	-	benign(0.273)	deleterious(0)	deleterious(0.474)	NULL
B3GALT1	8708	genome.wustl.edu	37	2	168725848	168725848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020981.2	+1	reviewed	p.T100M	1.000	120	0%	107	23.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Galactosyl_T
CERS6	253782	genome.wustl.edu	37	2	169551484	169551484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203463.1	+1	validated	p.L178I	0.999	623	0%	176	11.4%	10	40%	benign(0.002)	tolerated(0.32)	neutral(0.024)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC
CERS6	253782	genome.wustl.edu	37	2	169622254	169622254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203463.1	+1	validated	p.G333D	1.000	291	0%	213	20.2%	9	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
NOSTRIN	115677	genome.wustl.edu	37	2	169721470	169721470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039724.3	+1	validated	p.T504I	0.000	494	0%	108	22.2%	15	33.3%	possibly_damaging(0.694)	deleterious(0.01)	deleterious(0.655)	NULL
G6PC2	57818	genome.wustl.edu	37	2	169763278	169763278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021176.2	+1	reviewed	p.G182E	1.000	489	0%	375	22.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
ABCB11	8647	genome.wustl.edu	37	2	169825858	169825858	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003742.2	-1	reviewed	e15+2	0.997	346	0%	83	27.7%	0	-	-	-	-	-
ABCB11	8647	genome.wustl.edu	37	2	169853231	169853231	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003742.2	-1	reviewed	p.L131	0.996	235	0%	46	28.3%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
LRP2	4036	genome.wustl.edu	37	2	170026249	170026249	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004525.2	-1	reviewed	p.S3820	0.000	315	0%	92	12%	0	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170038805	170038805	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004525.2	-1	reviewed	p.R3290	0.000	190	0.5%	82	29.3%	0	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170062956	170062956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004525.2	-1	reviewed	p.D2425G	1.000	242	0%	82	24.4%	0	-	possibly_damaging(0.88)	tolerated(0.08)	deleterious(0.643)	HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170094720	170094720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004525.2	-1	reviewed	p.E1463K	0.412	244	0%	180	25.6%	0	-	benign(0.023)	tolerated(0.34)	neutral(0.024)	HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170136004	170136004	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004525.2	-1	reviewed	p.I481	0.999	238	0%	57	22.8%	0	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_Grow_fac_recept,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170150687	170150687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004525.2	-1	reviewed	p.C208Y	1.000	242	0%	68	10.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
FASTKD1	79675	genome.wustl.edu	37	2	170394636	170394636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024622.3	-1	validated	p.R654Q	0.301	222	0%	92	21.7%	9	22.2%	benign(0.003)	tolerated(0.31)	neutral(0.027)	NULL
FASTKD1	79675	genome.wustl.edu	37	2	170413713	170413713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024622.3	-1	validated	p.S356P	0.870	373	0%	234	14.5%	7	28.5%	probably_damaging(0.958)	tolerated(0.15)	deleterious(0.643)	NULL
PPIG	9360	genome.wustl.edu	37	2	170493298	170493298	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004792.2	+1	validated	p.D510E	0.306	150	0%	62	19.4%	44	43.1%	benign(0.018)	tolerated(0.69)	neutral(0.003)	NULL
PHOSPHO2	493911	genome.wustl.edu	37	2	170557699	170557699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008489.2	+1	provisional	p.P73H	1.000	309	0%	235	25.1%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Put_Phosphatase,superfamily_HAD-like
METTL5	29081	genome.wustl.edu	37	2	170671995	170671995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014168.2	-1	provisional	p.I178S	0.885	651	0%	678	25.7%	79	21.5%	benign(0.026)	deleterious(0)	neutral(0.446)	superfamily_SSF53335
UBR3	130507	genome.wustl.edu	37	2	170753073	170753073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172070.3	+1	validated	p.K431N	1.000	257	0%	131	26.7%	1	0%	benign(0.378)	tolerated(0.44)	neutral(0.133)	NULL
UBR3	130507	genome.wustl.edu	37	2	170783470	170783470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172070.3	+1	validated	p.R776H	1.000	387	0%	160	28.1%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
UBR3	130507	genome.wustl.edu	37	2	170843265	170843265	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172070.3	+1	validated	p.R1249*	0.931	256	0%	125	32%	3	0%	-	-	-	NULL
MYO3B	140469	genome.wustl.edu	37	2	171092515	171092515	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000442690	+1	known	p.A206T	1.000	413	0%	201	25.4%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TLK1	9874	genome.wustl.edu	37	2	171911678	171911678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012290.4	-1	validated	p.R185Q	1.000	70	0%	41	17.1%	20	35%	benign(0.014)	tolerated(0.79)	neutral(0.002)	NULL
DCAF17	80067	genome.wustl.edu	37	2	172291690	172291690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025000.3	+1	reviewed	p.V75A	1.000	368	0%	516	22.9%	2	0%	benign(0.046)	tolerated(0.12)	neutral(0.263)	NULL
DCAF17	80067	genome.wustl.edu	37	2	172330446	172330446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025000.3	+1	reviewed	p.A351D	1.000	394	0%	96	14.6%	1	0%	probably_damaging(0.953)	tolerated(1)	neutral(0.397)	NULL
HAT1	8520	genome.wustl.edu	37	2	172841247	172841247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003642.3	+1	reviewed	p.K325N	1.000	205	0%	146	19.9%	78	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_Acyl_CoA_acyltransferase
RAPGEF4	11069	genome.wustl.edu	37	2	173830364	173830364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007023.3	+1	validated	p.A258V	1.000	320	0%	139	16.5%	2	50%	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
ZAK	51776	genome.wustl.edu	37	2	174047603	174047603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016653.2	+1	reviewed	p.L90P	1.000	226	0%	92	23.9%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
CDCA7	83879	genome.wustl.edu	37	2	174223472	174223472	+	Missense_Mutation	SNP	G	G	T	rs12989017		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031942.4	+1	reviewed	p.K18N	1.000	313	0%	275	21.8%	9	44.4%	possibly_damaging(0.701)	deleterious(0.04)	deleterious(0.601)	NULL
CDCA7	83879	genome.wustl.edu	37	2	174232002	174232002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031942.4	+1	reviewed	p.A437V	1.000	491	0.4%	352	21.6%	82	41.4%	probably_damaging(0.981)	tolerated(0.19)	deleterious(0.475)	HMMPfam_zf-4CXXC_R1
SP3	6670	genome.wustl.edu	37	2	174820238	174820238	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000416195	-1	known	p.P291L	1.000	287	0%	243	23.5%	23	21.7%	-	-	-	NULL
OLA1	29789	genome.wustl.edu	37	2	174946749	174946749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013341.3	-1	validated	p.A258T	1.000	256	0%	108	26.9%	139	46.7%	benign(0.057)	tolerated(0.12)	neutral(0.264)	superfamily_P-loop containing nucleoside triphosphate hydrolases
GPR155	151556	genome.wustl.edu	37	2	175300998	175300998	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033045.2	-1	validated	p.N820T	0.999	307	0%	117	20.5%	2	50%	probably_damaging(0.965)	deleterious(0.04)	deleterious(0.756)	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
GPR155	151556	genome.wustl.edu	37	2	175337775	175337775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033045.2	-1	validated	p.L260I	1.000	125	0%	128	22.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Mem_trans
ATF2	1386	genome.wustl.edu	37	2	175976325	175976325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001880.2	-1	reviewed	p.P267S	1.000	211	0%	259	20.5%	16	31.2%	benign(0.048)	tolerated(0.28)	neutral(0.035)	NULL
KIAA1715	80856	genome.wustl.edu	37	2	176812241	176812241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030650.1	-1	validated	p.L225I	1.000	272	0%	85	14.1%	4	25%	benign(0.003)	tolerated(0.42)	neutral(0.014)	NULL
EVX2	344191	genome.wustl.edu	37	2	176945500	176945500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080458.1	-1	reviewed	p.A256S	1.000	35	0%	26	34.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Homeodomain_like
HOXD9	3235	genome.wustl.edu	37	2	176988888	176988888	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014213.3	+1	reviewed	p.C348	1.000	113	0%	119	24.4%	25	76%	-	-	-	superfamily_Homeodomain-like
HOXD1	3231	genome.wustl.edu	37	2	177054803	177054803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024501.1	+1	reviewed	p.S307F	0.912	114	0.9%	140	23.6%	0	-	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	NULL
NFE2L2	4780	genome.wustl.edu	37	2	178097915	178097915	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000423513	-1	known	p.Y139*	0.000	202	0%	92	21.7%	0	-	-	-	-	NULL
TTC30A	92104	genome.wustl.edu	37	2	178482528	178482528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152275.3	-1	validated	p.R301M	0.394	150	0%	155	13.5%	4	0%	benign(0.051)	deleterious(0.01)	neutral(0.409)	superfamily_SSF48452
TTC30A	92104	genome.wustl.edu	37	2	178483167	178483167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152275.3	-1	validated	p.A88V	1.000	67	0%	58	13.8%	3	0%	benign(0.408)	deleterious(0.01)	deleterious(0.538)	superfamily_SSF48452
PDE11A	50940	genome.wustl.edu	37	2	178936806	178936806	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016953.3	-1	reviewed	p.E120V	1.000	90	1.1%	108	25.9%	0	-	possibly_damaging(0.83)	deleterious(0.01)	deleterious(0.721)	NULL
RBM45	129831	genome.wustl.edu	37	2	178988953	178988953	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152945.2	+1	provisional	p.E390*	1.000	112	0%	84	22.6%	11	0%	-	-	-	NULL
OSBPL6	114880	genome.wustl.edu	37	2	179213950	179213950	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145739.1	+1	reviewed	e11-1	1.000	421	0%	239	20.9%	0	-	-	-	-	-
OSBPL6	114880	genome.wustl.edu	37	2	179247992	179247992	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145739.1	+1	reviewed	p.P625	0.403	133	0%	37	18.9%	0	-	-	-	-	HMMPfam_Oxysterol_BP
OSBPL6	114880	genome.wustl.edu	37	2	179255832	179255832	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145739.1	+1	reviewed	p.V782	0.942	544	0%	218	24.3%	2	0%	-	-	-	HMMPfam_Oxysterol_BP
OSBPL6	114880	genome.wustl.edu	37	2	179257142	179257142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145739.1	+1	reviewed	p.S821Y	1.000	342	0%	152	21.1%	0	-	probably_damaging(0.981)	deleterious(0.03)	deleterious(0.790)	HMMPfam_Oxysterol_BP
DFNB59	494513	genome.wustl.edu	37	2	179325829	179325829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042702.3	+1	reviewed	p.R296Q	1.000	683	0.1%	515	18.8%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLEKHA3	65977	genome.wustl.edu	37	2	179365840	179365840	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019091.3	+1	validated	p.R238*	0.999	279	0%	104	26.9%	16	6.2%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179395519	179395519	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.E32705*	0.997	686	0%	311	19.6%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179396725	179396725	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.E32303*	1.000	434	0%	161	16.1%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179398595	179398595	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133378.4	-1	reviewed	p.T31681I	0.699	213	0%	97	26.8%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179403871	179403871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.G30361C	1.000	463	0%	95	23.2%	2	50%	probably_damaging(1)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179417781	179417781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.T27379K	1.000	228	0%	34	17.6%	0	-	benign(0.34)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179418252	179418252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.P27257H	1.000	177	0%	37	32.4%	0	-	probably_damaging(0.999)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179418773	179418773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.R27119C	1.000	475	0%	112	28.6%	0	-	probably_damaging(0.999)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179421682	179421682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.L26830S	1.000	213	0%	27	14.8%	0	-	probably_damaging(0.999)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179432595	179432595	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133378.4	-1	reviewed	p.P23520H	0.999	256	0.4%	49	22.4%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179438668	179438668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.S21494I	1.000	297	0%	65	15.4%	0	-	benign(0.19)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179439040	179439040	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133378.4	-1	reviewed	p.Q21372*	0.994	222	0%	50	18%	0	-	probably_damaging(0.993)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179441768	179441768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.R20528S	1.000	242	0%	62	21%	0	-	benign(0.059)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179445100	179445100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.L19766M	1.000	550	0%	83	22.9%	4	0%	probably_damaging(0.964)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179464463	179464463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.P16152H	1.000	428	0.2%	98	23.5%	0	-	benign(0.127)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179471822	179471822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.R15268H	1.000	373	0.3%	107	25.2%	0	-	possibly_damaging(0.535)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179477786	179477786	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.P13986	0.979	197	0%	65	24.6%	2	50%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179482120	179482120	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.R13330*	0.874	405	0%	73	19.2%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179485304	179485304	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.E12747V	1.000	319	0%	57	19.3%	0	-	benign(0.099)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179487478	179487478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.F12376L	0.997	301	0%	79	20.3%	0	-	benign(0.014)	-	-	HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179501150	179501150	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.T11200	0.990	92	1.1%	25	28%	1	0%	-	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179577700	179577700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.P7774S	1.000	125	0%	63	22.2%	0	-	unknown(0)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179579917	179579917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.L7422F	1.000	510	0%	210	21%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179590504	179590504	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.K5605Q	0.394	398	0%	94	23.4%	0	-	unknown(0)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179593263	179593263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.G5220R	1.000	226	0%	95	24.2%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179594204	179594204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356127	-1	known	p.P4983S	1.000	274	0%	90	30%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179611853	179611853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133379.3	-1	reviewed	p.L5092M	0.000	224	0%	82	26.8%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TTN	7273	genome.wustl.edu	37	2	179616052	179616052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133379.3	-1	reviewed	p.S3692N	0.998	342	0%	85	16.5%	0	-	benign(0.001)	tolerated(0.86)	neutral(0.001)	NULL
TTN	7273	genome.wustl.edu	37	2	179621008	179621008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000342175	-1	known	p.C3561Y	1.000	271	0%	56	17.9%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409
TTN	7273	genome.wustl.edu	37	2	179629357	179629357	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133379.3	-1	reviewed	p.T3295	0.156	162	0%	38	18.4%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179640597	179640597	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133379.3	-1	reviewed	p.R1998	0.908	179	0%	75	17.3%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179643819	179643819	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133379.3	-1	reviewed	p.R1330	0.998	250	0.4%	79	15.2%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179644161	179644161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133379.3	-1	reviewed	p.R1253K	1.000	99	0%	34	14.7%	0	-	benign(0.014)	-	-	NULL
CCDC141	285025	genome.wustl.edu	37	2	179721095	179721095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173648.2	-1	provisional	p.K343N	1.000	303	0.3%	84	14.3%	0	-	probably_damaging(1)	tolerated(0.44)	deleterious(0.512)	NULL
CCDC141	285025	genome.wustl.edu	37	2	179732779	179732779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173648.2	-1	provisional	p.D275N	0.915	177	0%	44	27.3%	0	-	possibly_damaging(0.767)	tolerated(0.17)	neutral(0.343)	NULL
SESTD1	91404	genome.wustl.edu	37	2	180041186	180041186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178123.4	-1	validated	p.V82I	1.000	556	0%	153	19.6%	9	44.4%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
LOC100131482	100131482	genome.wustl.edu	37	2	180679214	180679214	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001722616.1	+1	model	p.C79	0.999	227	0%	179	19%	0	-	-	-	-	HMMPfam_DIM1,superfamily_Thioredoxin-like
LOC100131482	100131482	genome.wustl.edu	37	2	180679334	180679334	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001722616.1	+1	model	p.D119	0.928	185	0%	116	23.3%	0	-	-	-	-	HMMPfam_DIM1,superfamily_Thioredoxin-like
SSFA2	6744	genome.wustl.edu	37	2	182780192	182780192	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130445.1	+1	validated	p.Q609*	0.002	194	0%	113	26.5%	16	25%	-	-	-	NULL
DNAJC10	54431	genome.wustl.edu	37	2	183621144	183621144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018981.1	+1	provisional	p.P586Q	1.000	290	0%	57	17.5%	62	48.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
NCKAP1	10787	genome.wustl.edu	37	2	183792846	183792846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_205842.1	-1	validated	p.A1066V	1.000	485	0%	141	20.6%	123	42.2%	benign(0.002)	tolerated(0.25)	neutral(0.037)	HMMPfam_Nckap1
ZNF804A	91752	genome.wustl.edu	37	2	185803687	185803687	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194250.1	+1	provisional	p.P1188	0.987	798	0%	245	23.7%	1	0%	-	-	-	NULL
FSIP2	401024	genome.wustl.edu	37	2	186670445	186670445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000424728	+1	known	p.R5471I	0.001	170	0%	63	22.2%	0	-	benign(0.014)	deleterious(0.02)	neutral(0.384)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186671119	186671119	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000424728	+1	known	p.E5696*	0.537	192	0%	50	24%	0	-	-	-	-	NULL
FSIP2	401024	genome.wustl.edu	37	2	186678687	186678687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000424728	+1	known	p.A6748D	0.004	87	0%	34	14.7%	1	100%	possibly_damaging(0.847)	deleterious(0.01)	deleterious(0.731)	NULL
ZSWIM2	151112	genome.wustl.edu	37	2	187694534	187694534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182521.2	-1	validated	p.A339T	0.997	528	0%	105	27.6%	0	-	benign(0.377)	tolerated(0.07)	neutral(0.440)	superfamily_SSF57850
ZSWIM2	151112	genome.wustl.edu	37	2	187709485	187709485	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182521.2	-1	validated	e3-1	0.994	138	0%	254	24.4%	0	-	-	-	-	-
CALCRL	10203	genome.wustl.edu	37	2	188245237	188245237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005795.4	-1	validated	p.T122I	1.000	365	0%	474	18.8%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HRM,HMMSmart_HormR,superfamily_SSF111418
COL3A1	1281	genome.wustl.edu	37	2	189851864	189851864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000090.3	+1	reviewed	p.A176D	1.000	375	0%	151	9.9%	77	0%	unknown(0)	tolerated(0.16)	-	HMMPfam_Collagen
SLC40A1	30061	genome.wustl.edu	37	2	190437680	190437680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014585.5	-1	reviewed	p.Q93H	1.000	140	0%	123	27.6%	21	28.5%	benign(0.005)	tolerated(0.28)	neutral(0.032)	superfamily_MFS general substrate transporter
ASNSD1	54529	genome.wustl.edu	37	2	190531388	190531388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019048.2	+1	validated	p.G177V	1.000	119	0%	159	22%	12	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
HIBCH	26275	genome.wustl.edu	37	2	191152361	191152361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014362.3	-1	reviewed	p.S130F	0.083	220	0%	73	15.1%	22	40.9%	possibly_damaging(0.592)	tolerated(0.33)	neutral(0.228)	HMMPfam_ECH,superfamily_ClpP/crotonase
INPP1	3628	genome.wustl.edu	37	2	191236105	191236105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128928.1	+1	reviewed	p.A393T	0.000	110	0%	49	16.3%	46	43.4%	benign(0.002)	tolerated(0.05)	neutral(0.345)	superfamily_Carbohydrate phosphatase
NAB1	4664	genome.wustl.edu	37	2	191535133	191535133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005966.3	+1	validated	p.A301T	0.998	224	0%	112	16.1%	18	27.7%	benign(0.228)	deleterious(0)	neutral(0.467)	HMMPfam_NCD2
GLS	2744	genome.wustl.edu	37	2	191765337	191765337	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014905.3	+1	validated	p.K218T	1.000	410	0%	303	20.8%	8	12.5%	benign(0.148)	deleterious(0.01)	neutral(0.419)	NULL
STAT1	6772	genome.wustl.edu	37	2	191864408	191864408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007315.3	-1	reviewed	p.S162I	0.253	432	0.2%	259	10.8%	198	23.2%	benign(0.006)	tolerated(0.41)	neutral(0.015)	HMMPfam_STAT_alpha,superfamily_STAT
MYO1B	4430	genome.wustl.edu	37	2	192255197	192255197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130158.1	+1	validated	p.P654L	1.000	103	0%	65	24.6%	22	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC39A10	57181	genome.wustl.edu	37	2	196545462	196545462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127257.1	+1	validated	p.K232N	0.997	162	0%	83	24.1%	5	40%	benign(0.075)	deleterious(0.04)	neutral(0.354)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196651847	196651847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018897.2	-1	validated	p.V3589I	0.984	272	0%	92	26.1%	2	0%	possibly_damaging(0.466)	tolerated(0.26)	neutral(0.187)	HMMPfam_Dynein_heavy
DNAH7	56171	genome.wustl.edu	37	2	196729053	196729053	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018897.2	-1	validated	p.R2442	0.996	466	0.2%	157	31.8%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196737053	196737053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018897.2	-1	validated	p.R2185H	1.000	312	0%	177	22.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196749455	196749455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018897.2	-1	validated	p.L1873I	0.998	285	0%	186	28%	0	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196822029	196822029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018897.2	-1	validated	p.A1012T	0.322	273	0%	86	16.3%	0	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_DHC_N2
DNAH7	56171	genome.wustl.edu	37	2	196825276	196825276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018897.2	-1	validated	p.P867S	0.992	181	0%	80	21.2%	0	-	benign(0.355)	tolerated(0.72)	neutral(0.114)	HMMPfam_DHC_N2
DNAH7	56171	genome.wustl.edu	37	2	196851821	196851821	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018897.2	-1	validated	p.M575L	0.996	325	0%	170	22.4%	0	-	benign(0.001)	tolerated(0.91)	-	NULL
DNAH7	56171	genome.wustl.edu	37	2	196852954	196852954	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018897.2	-1	validated	e13-1	0.994	183	0%	113	20.4%	0	-	-	-	-	-
DNAH7	56171	genome.wustl.edu	37	2	196883958	196883958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018897.2	-1	validated	p.D269N	1.000	196	0%	73	27.4%	0	-	benign(0.051)	tolerated(0.5)	neutral(0.013)	NULL
HECW2	57520	genome.wustl.edu	37	2	197080599	197080599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020760.1	-1	provisional	p.A1533T	0.980	208	0%	156	11.5%	1	0%	possibly_damaging(0.822)	tolerated(0.3)	neutral(0.340)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HECW2	57520	genome.wustl.edu	37	2	197184200	197184200	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020760.1	-1	provisional	p.F472V	0.897	109	0%	123	23.6%	0	-	benign(0.007)	deleterious(0.05)	neutral(0.345)	NULL
HECW2	57520	genome.wustl.edu	37	2	197194347	197194347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020760.1	-1	provisional	p.A175S	1.000	279	0%	107	15%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
GTF3C3	9330	genome.wustl.edu	37	2	197636590	197636590	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012086.2	-1	provisional	p.Q714H	1.000	336	0%	216	11.6%	48	31.2%	probably_damaging(0.978)	tolerated(0.08)	deleterious(0.720)	superfamily_TPR-like
GTF3C3	9330	genome.wustl.edu	37	2	197664242	197664242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012086.2	-1	provisional	p.E32K	1.000	310	0%	321	24.3%	9	33.3%	unknown(0)	-	-	NULL
ANKRD44	91526	genome.wustl.edu	37	2	197986077	197986077	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153697.1	-1	provisional	p.N270	0.938	286	0.3%	105	22.9%	3	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
COQ10B	80219	genome.wustl.edu	37	2	198324757	198324757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025147.3	+1	provisional	p.A69V	1.000	378	0%	410	21.7%	19	31.5%	benign(0.043)	deleterious(0.02)	neutral(0.386)	NULL
RFTN2	130132	genome.wustl.edu	37	2	198436872	198436872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144629.2	-1	validated	p.R456W	0.000	388	0.3%	122	20.5%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
PLCL1	5334	genome.wustl.edu	37	2	198949322	198949322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006226.3	+1	validated	p.E263K	1.000	133	0%	45	28.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_efhand_like,superfamily_SSF47473
PLCL1	5334	genome.wustl.edu	37	2	198950679	198950679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006226.3	+1	validated	p.T715M	0.999	604	0.2%	172	20.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
SATB2	23314	genome.wustl.edu	37	2	200173629	200173629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015265.3	-1	reviewed	p.R532C	1.000	116	0.9%	76	18.4%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUT
AOX1	316	genome.wustl.edu	37	2	201470281	201470281	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001159.3	+1	reviewed	p.G279	0.000	231	0%	93	17.2%	0	-	-	-	-	HMMPfam_FAD_binding_5,superfamily_FAD-binding domain
AOX1	316	genome.wustl.edu	37	2	201505881	201505881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001159.3	+1	reviewed	p.G877S	1.000	312	0%	94	22.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ald_Xan_dh_C2,superfamily_Molybdenum cofactor-binding domain
BZW1	9689	genome.wustl.edu	37	2	201681964	201681964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014670.2	+1	validated	p.G180R	1.000	251	0%	248	25%	16	6.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BZW1	9689	genome.wustl.edu	37	2	201682715	201682715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014670.2	+1	validated	p.A186D	1.000	292	0%	260	13.5%	16	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ARM-type_fold
FAM126B	285172	genome.wustl.edu	37	2	201873697	201873697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173822.3	-1	validated	p.R177W	1.000	273	0%	87	27.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Hyccin
CFLAR	8837	genome.wustl.edu	37	2	202025292	202025292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127183.1	+1	validated	p.V311I	0.986	205	0%	193	21.2%	22	27.2%	benign(0.011)	tolerated(1)	neutral(0.001)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CASP8	841	genome.wustl.edu	37	2	202134318	202134318	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001228.4	+1	reviewed	p.L131	0.000	358	0%	93	14%	0	-	-	-	-	HMMSmart_DED,superfamily_DEATH_like
CASP8	841	genome.wustl.edu	37	2	202141596	202141596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080125.1	+1	reviewed	p.C295Y	1.000	256	0%	133	14.3%	23	52.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CASP8	841	genome.wustl.edu	37	2	202149672	202149672	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080125.1	+1	reviewed	p.C371*	1.000	185	0%	113	23.9%	43	9.3%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_HIS,superfamily_Caspase-like
ALS2CR11	151254	genome.wustl.edu	37	2	202358118	202358118	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000439140	-1	known	p.S982	0.000	63	0%	60	20%	0	-	-	-	-	NULL
TMEM237	65062	genome.wustl.edu	37	2	202496841	202496841	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001044385.1	-1	validated	p.Q162	0.460	281	0%	209	14.4%	17	23.5%	-	-	-	NULL
MPP4	58538	genome.wustl.edu	37	2	202554962	202554962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033066.2	-1	reviewed	p.V81G	0.003	373	0%	102	20.6%	0	-	benign(0.042)	tolerated(0.34)	neutral(0.025)	HMMSmart_SM00569
ALS2	57679	genome.wustl.edu	37	2	202593836	202593836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020919.3	-1	reviewed	p.R884M	1.000	339	0%	185	24.3%	5	60%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	superfamily_DBL homology domain (DH-domain)
CDK15	65061	genome.wustl.edu	37	2	202677249	202677249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139158.1	+1	provisional	p.A87T	0.654	336	0%	153	17.6%	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
BMPR2	659	genome.wustl.edu	37	2	203395663	203395663	+	Missense_Mutation	SNP	G	G	A	rs75601858		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001204.6	+1	reviewed	p.A372T	1.000	124	0%	149	32.9%	10	40%	probably_damaging(0.997)	tolerated(0.39)	deleterious(0.482)	superfamily_Kinase_like,HMMPfam_Pkinase
BMPR2	659	genome.wustl.edu	37	2	203420178	203420178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001204.6	+1	reviewed	p.R597Q	1.000	344	0.3%	175	21.1%	16	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WDR12	55759	genome.wustl.edu	37	2	203749014	203749014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018256.3	-1	reviewed	p.V299M	1.000	210	0%	188	20.7%	65	50.7%	benign(0.372)	tolerated(0.07)	neutral(0.438)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ALS2CR8	79800	genome.wustl.edu	37	2	203826149	203826149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001104586.1	+1	validated	p.G278W	1.000	142	0%	76	17.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NBEAL1	65065	genome.wustl.edu	37	2	203990703	203990703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114132.1	+1	validated	p.L929I	0.998	346	0%	121	28.9%	0	-	possibly_damaging(0.569)	tolerated(0.5)	neutral(0.205)	NULL
NBEAL1	65065	genome.wustl.edu	37	2	204000624	204000624	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114132.1	+1	validated	p.T1317	0.027	194	0%	81	30.9%	0	-	-	-	-	NULL
NBEAL1	65065	genome.wustl.edu	37	2	204002960	204002960	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114132.1	+1	validated	p.N1518	1.000	323	0%	94	26.6%	0	-	-	-	-	NULL
CYP20A1	57404	genome.wustl.edu	37	2	204103794	204103794	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177538.2	+1	reviewed	p.D3	1.000	78	0%	49	16.3%	13	38.4%	-	-	-	NULL
RAPH1	65059	genome.wustl.edu	37	2	204304582	204304582	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213589.1	-1	validated	p.W1111G	1.000	278	0.4%	152	24.3%	1	0%	benign(0.021)	tolerated(0.22)	neutral(0.043)	NULL
NRP2	8828	genome.wustl.edu	37	2	206548029	206548029	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201266.1	+1	reviewed	p.P5	0.997	363	0%	540	13.5%	14	21.4%	-	-	-	NULL
NRP2	8828	genome.wustl.edu	37	2	206590775	206590775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201266.1	+1	reviewed	p.P320L	1.000	279	0%	121	15.7%	14	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,superfamily_Galactose-binding domain-like
NRP2	8828	genome.wustl.edu	37	2	206659485	206659485	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201266.1	+1	reviewed	p.Y833*	0.134	72	0%	36	22.2%	15	26.6%	-	-	-	NULL
INO80D	54891	genome.wustl.edu	37	2	206869499	206869499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017759.4	-1	validated	p.L893F	1.000	543	0.2%	206	16.5%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GPR1	2825	genome.wustl.edu	37	2	207040930	207040930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098199.1	-1	validated	p.L348M	0.001	214	0%	127	22%	0	-	benign(0.267)	tolerated(0.18)	neutral(0.084)	NULL
GPR1	2825	genome.wustl.edu	37	2	207041014	207041014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098199.1	-1	validated	p.A320T	0.769	242	0%	134	20.9%	0	-	benign(0.004)	tolerated(0.23)	neutral(0.042)	superfamily_Family A G protein-coupled receptor-like
GPR1	2825	genome.wustl.edu	37	2	207041126	207041126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098199.1	-1	validated	p.M282I	0.005	315	0%	169	23.1%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZDBF2	57683	genome.wustl.edu	37	2	207176105	207176105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020923.1	+1	validated	p.A2285T	0.000	113	0%	43	20.9%	2	0%	possibly_damaging(0.482)	-	-	NULL
ADAM23	8745	genome.wustl.edu	37	2	207437908	207437908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003812.2	+1	reviewed	p.D576Y	1.000	494	0%	330	13.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)
DYTN	391475	genome.wustl.edu	37	2	207583003	207583003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001093730.1	-1	provisional	p.M1V	0.994	398	0%	141	16.3%	0	-	possibly_damaging(0.643)	deleterious(0.05)	deleterious(0.571)	NULL
MDH1B	130752	genome.wustl.edu	37	2	207615717	207615717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039845.1	-1	validated	p.E331D	0.893	421	0%	151	13.9%	0	-	benign(0)	tolerated(1)	-	superfamily_LDH C-terminal domain-like
FASTKD2	22868	genome.wustl.edu	37	2	207638989	207638989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136193.1	+1	reviewed	p.R432Q	1.000	449	0%	236	17.4%	18	44.4%	benign(0.267)	tolerated(0.25)	neutral(0.065)	NULL
KLF7	8609	genome.wustl.edu	37	2	207989096	207989096	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003709.2	-1	provisional	p.T45	0.202	92	0%	113	18.6%	1	100%	-	-	-	NULL
CREB1	1385	genome.wustl.edu	37	2	208432219	208432219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134442.3	+1	reviewed	p.Q112H	1.000	266	0%	136	22.1%	8	62.5%	possibly_damaging(0.921)	tolerated(0.09)	deleterious(0.667)	NULL
PLEKHM3	389072	genome.wustl.edu	37	2	208693097	208693097	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080475.2	-1	validated	p.D744	0.983	119	0%	62	17.7%	1	0%	-	-	-	NULL
PLEKHM3	389072	genome.wustl.edu	37	2	208841380	208841380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080475.2	-1	validated	p.C514Y	1.000	120	0%	78	23.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CRYGD	1421	genome.wustl.edu	37	2	208986454	208986454	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006891.3	-1	reviewed	p.D156	1.000	108	0%	169	27.2%	0	-	-	-	-	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
CRYGC	1420	genome.wustl.edu	37	2	208994239	208994239	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020989.3	-1	reviewed	p.R60*	0.897	57	0%	67	23.9%	0	-	-	-	-	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
CRYGB	1419	genome.wustl.edu	37	2	209010732	209010732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005210.3	-1	validated	p.F6L	1.000	200	0.5%	87	21.8%	0	-	benign(0.036)	tolerated(0.07)	neutral(0.321)	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
IDH1	3417	genome.wustl.edu	37	2	209113170	209113170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005896.2	-1	reviewed	p.I113V	1.000	370	0%	282	23.8%	54	44.4%	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
PIKFYVE	200576	genome.wustl.edu	37	2	209168981	209168981	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015040.3	+1	reviewed	p.D469	1.000	300	0.3%	91	19.8%	1	0%	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
PIKFYVE	200576	genome.wustl.edu	37	2	209218653	209218653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015040.3	+1	reviewed	p.R1959Q	1.000	327	0%	365	18.6%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
PTH2R	5746	genome.wustl.edu	37	2	209292960	209292960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005048.2	+1	reviewed	p.Q37R	1.000	354	0%	185	18.4%	1	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF111418
PTH2R	5746	genome.wustl.edu	37	2	209353778	209353778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005048.2	+1	reviewed	p.G373E	0.999	457	0%	270	21.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2,superfamily_SSF81321
UNC80	285175	genome.wustl.edu	37	2	210685075	210685075	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032504.1	+1	validated	p.I668S	1.000	544	0%	235	23%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
UNC80	285175	genome.wustl.edu	37	2	210685095	210685095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032504.1	+1	validated	p.V675M	1.000	589	0.2%	265	14.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UNC80	285175	genome.wustl.edu	37	2	210685340	210685340	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032504.1	+1	validated	p.D756	0.946	145	0%	71	15.5%	0	-	-	-	-	NULL
UNC80	285175	genome.wustl.edu	37	2	210696313	210696313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032504.1	+1	validated	p.L925M	1.000	195	0%	63	15.9%	0	-	probably_damaging(0.996)	tolerated(0.44)	deleterious(0.474)	NULL
UNC80	285175	genome.wustl.edu	37	2	210699684	210699684	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032504.1	+1	validated	p.P997	0.989	257	0.8%	96	16.7%	0	-	-	-	-	NULL
UNC80	285175	genome.wustl.edu	37	2	210777370	210777370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032504.1	+1	validated	p.M1557I	1.000	154	0%	64	12.5%	0	-	possibly_damaging(0.444)	tolerated(0.6)	neutral(0.149)	NULL
UNC80	285175	genome.wustl.edu	37	2	210791579	210791579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032504.1	+1	validated	p.T1826I	1.000	328	0%	68	14.7%	0	-	probably_damaging(0.995)	tolerated(0.11)	deleterious(0.729)	NULL
ACADL	33	genome.wustl.edu	37	2	211074977	211074977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001608.3	-1	reviewed	p.Q182H	0.997	439	0%	204	21.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_M,superfamily_AcylCoA_dehyd_NM
CPS1	1373	genome.wustl.edu	37	2	211457661	211457661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122633.1	+1	reviewed	p.P388Q	1.000	289	0%	64	23.4%	0	-	possibly_damaging(0.712)	deleterious(0.02)	deleterious(0.641)	HMMPfam_GATase,superfamily_Class I glutamine amidotransferase-like
CPS1	1373	genome.wustl.edu	37	2	211459300	211459300	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122633.1	+1	reviewed	p.P417	0.154	442	0.2%	109	22%	0	-	-	-	-	NULL
CPS1	1373	genome.wustl.edu	37	2	211476963	211476963	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122633.1	+1	reviewed	p.D844E	1.000	219	0%	74	10.8%	1	100%	benign(0.003)	tolerated(0.09)	neutral(0.296)	superfamily_Carbamoyl phosphate synthetase large subunit connection domain
ERBB4	2066	genome.wustl.edu	37	2	212248376	212248376	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005235.2	-1	reviewed	p.P1297	0.659	189	0%	74	21.6%	3	66.6%	-	-	-	NULL
ERBB4	2066	genome.wustl.edu	37	2	212248468	212248468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005235.2	-1	reviewed	p.F1267L	1.000	348	0%	112	26.8%	1	0%	benign(0.009)	tolerated(0.39)	neutral(0.017)	NULL
ERBB4	2066	genome.wustl.edu	37	2	212285279	212285279	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005235.2	-1	reviewed	p.L1008V	0.986	306	0%	260	23.5%	1	100%	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	superfamily_Protein kinase-like (PK-like)
IKZF2	22807	genome.wustl.edu	37	2	214012440	214012440	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016260.2	-1	reviewed	p.M44R	1.000	642	0%	552	25.4%	0	-	benign(0.016)	tolerated(0.64)	neutral(0.004)	NULL
SPAG16	79582	genome.wustl.edu	37	2	214794745	214794745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024532.3	+1	validated	p.G426C	0.998	300	0%	103	12.6%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SPAG16	79582	genome.wustl.edu	37	2	214794788	214794788	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024532.3	+1	validated	p.W440*	1.000	300	0%	116	21.6%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SPAG16	79582	genome.wustl.edu	37	2	214878729	214878729	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024532.3	+1	validated	p.E485	0.999	364	0%	95	15.8%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
VWC2L	402117	genome.wustl.edu	37	2	215279089	215279089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080500.2	+1	provisional	p.G58S	1.000	260	0%	115	16.5%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMSmart_SM00214
VWC2L	402117	genome.wustl.edu	37	2	215301354	215301354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080500.2	+1	provisional	p.P131H	1.000	234	0%	69	26.1%	0	-	probably_damaging(0.986)	tolerated(0.15)	deleterious(0.675)	HMMSmart_SM00214
LOC100128203	100128203	genome.wustl.edu	37	2	215562666	215562666	+	Missense_Mutation	SNP	G	G	A	rs139472386	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001717729.1	+1	model	p.A125T	1.000	224	0%	95	18.9%	0	-	-	-	-	HMMPfam_Endosulfine
BARD1	580	genome.wustl.edu	37	2	215645882	215645882	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000465.2	-1	reviewed	p.L239R	0.031	71	0%	22	22.7%	0	-	possibly_damaging(0.826)	tolerated(0.41)	neutral(0.329)	NULL
BARD1	580	genome.wustl.edu	37	2	215646030	215646030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000465.2	-1	reviewed	p.D190Y	0.000	207	0%	88	13.6%	1	0%	possibly_damaging(0.711)	deleterious(0.04)	deleterious(0.606)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215797413	215797413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173076.2	-1	reviewed	p.S2578N	0.958	340	0%	73	23.3%	0	-	benign(0.256)	tolerated(0.11)	neutral(0.298)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215818666	215818666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173076.2	-1	reviewed	p.G2187S	0.999	342	0%	110	29.1%	0	-	possibly_damaging(0.505)	deleterious(0.02)	deleterious(0.552)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215854283	215854283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173076.2	-1	reviewed	p.Q1229H	0.997	338	0.3%	131	18.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215882815	215882815	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173076.2	-1	reviewed	p.E567*	1.000	462	0%	349	22.9%	0	-	-	-	-	NULL
ABCA12	26154	genome.wustl.edu	37	2	215910561	215910561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173076.2	-1	reviewed	p.S291I	1.000	289	0%	79	19%	0	-	possibly_damaging(0.852)	deleterious(0.04)	deleterious(0.676)	NULL
FN1	2335	genome.wustl.edu	37	2	216245579	216245579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_212482.1	-1	reviewed	p.H1797Y	1.000	90	0%	29	17.2%	6	0%	possibly_damaging(0.916)	tolerated(0.93)	neutral(0.367)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216249676	216249676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_212482.1	-1	reviewed	p.E1546K	1.000	161	0%	58	31%	18	0%	benign(0.002)	tolerated(0.26)	neutral(0.034)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216251566	216251566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_212482.1	-1	reviewed	p.E1486D	0.997	249	0%	81	9.9%	15	0%	possibly_damaging(0.457)	tolerated(0.12)	neutral(0.410)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PECR	55825	genome.wustl.edu	37	2	216908627	216908627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018441.5	-1	validated	p.D276Y	1.000	118	0%	41	17.1%	48	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MARCH4	57574	genome.wustl.edu	37	2	217148316	217148316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020814.2	-1	validated	p.S218N	1.000	122	0%	57	17.5%	0	-	probably_damaging(0.998)	tolerated(0.22)	deleterious(0.516)	NULL
IGFBP2	3485	genome.wustl.edu	37	2	217525359	217525359	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000597.2	+1	validated	p.G174	0.000	59	1.7%	75	25.3%	130	25.3%	-	-	-	NULL
TNS1	7145	genome.wustl.edu	37	2	218762543	218762543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022648.4	-1	reviewed	p.S49Y	1.000	146	0%	139	13.7%	4	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF52799
RUFY4	285180	genome.wustl.edu	37	2	218940234	218940234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198483.3	+1	validated	p.S167N	0.000	75	0%	57	10.5%	2	0%	benign(0.009)	tolerated(0.97)	neutral(0.001)	NULL
CXCR2	3579	genome.wustl.edu	37	2	218999671	218999671	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001557.3	+1	reviewed	p.Y49	0.000	269	0%	147	22.4%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
CXCR2	3579	genome.wustl.edu	37	2	218999760	218999760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001557.3	+1	reviewed	p.G79D	0.000	222	0%	130	23.8%	0	-	benign(0.177)	tolerated(0.44)	neutral(0.029)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TMBIM1	64114	genome.wustl.edu	37	2	219143801	219143801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022152.4	-1	validated	p.A128T	0.000	241	0%	199	19.1%	130	36.9%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_UPF0005
PNKD	25953	genome.wustl.edu	37	2	219206335	219206335	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015488.4	+1	reviewed	p.I201	1.000	19	0%	30	20%	35	17.1%	-	-	-	HMMPfam_Lactamase_B,superfamily_Metallo-hydrolase/oxidoreductase
SLC11A1	6556	genome.wustl.edu	37	2	219259751	219259751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000578.3	+1	reviewed	p.S549F	0.005	69	0%	99	11.1%	8	0%	possibly_damaging(0.791)	deleterious(0)	deleterious(0.741)	NULL
USP37	57695	genome.wustl.edu	37	2	219339438	219339438	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020935.2	-1	validated	p.T738	0.174	256	0%	155	25.2%	3	33.3%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP37	57695	genome.wustl.edu	37	2	219341664	219341664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020935.2	-1	validated	p.L648I	0.998	244	0%	178	23.6%	1	100%	benign(0.001)	tolerated(0.84)	neutral(0.001)	HMMPfam_UCH,superfamily_Cysteine proteinases
PLCD4	84812	genome.wustl.edu	37	2	219483489	219483489	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032726.2	+1	provisional	p.V123	1.000	53	0%	55	18.2%	1	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ZNF142	7701	genome.wustl.edu	37	2	219510921	219510921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105537.1	-1	validated	p.H475R	1.000	430	0%	280	13.6%	8	12.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TTLL4	9654	genome.wustl.edu	37	2	219605270	219605270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014640.4	+1	validated	p.A542T	0.004	225	0%	56	16.1%	5	40%	benign(0.029)	deleterious(0.02)	neutral(0.385)	NULL
TTLL4	9654	genome.wustl.edu	37	2	219618988	219618988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014640.4	+1	validated	p.S1159N	0.998	172	0%	65	26.2%	34	50%	possibly_damaging(0.774)	deleterious(0)	deleterious(0.733)	NULL
PRKAG3	53632	genome.wustl.edu	37	2	219693291	219693291	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017431.2	-1	reviewed	p.N222	0.822	275	0%	161	12.4%	0	-	-	-	-	HMMPfam_CBS,HMMSmart_SM00116,superfamily_CBS-domain
CCDC108	255101	genome.wustl.edu	37	2	219869090	219869090	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194302.2	-1	provisional	p.E1713	0.986	491	0%	455	22.9%	0	-	-	-	-	NULL
CCDC108	255101	genome.wustl.edu	37	2	219887049	219887049	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194302.2	-1	provisional	p.T941	0.420	96	0%	66	24.2%	0	-	-	-	-	superfamily_PapD-like
CCDC108	255101	genome.wustl.edu	37	2	219892705	219892705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194302.2	-1	provisional	p.Q626H	0.429	25	0%	26	26.9%	1	0%	benign(0.012)	tolerated(0.21)	neutral(0.044)	NULL
SLC23A3	151295	genome.wustl.edu	37	2	220026702	220026702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144890.1	-1	validated	p.A596S	0.450	126	0.8%	146	27.4%	0	-	unknown(0)	tolerated(0.23)	-	NULL
CNPPD1	27013	genome.wustl.edu	37	2	220039517	220039517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015680.4	-1	validated	p.G165S	1.000	143	0%	178	28.1%	89	47.1%	benign(0)	tolerated(0.73)	neutral(0.002)	HMMPfam_Cyclin
ZFAND2B	130617	genome.wustl.edu	37	2	220072682	220072682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138802.1	+1	provisional	p.S119I	1.000	68	0%	103	24.3%	38	31.5%	benign(0.017)	tolerated(0.06)	neutral(0.323)	HMMPfam_zf-AN1,HMMSmart_SM00154
ZFAND2B	130617	genome.wustl.edu	37	2	220072755	220072755	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138802.1	+1	provisional	p.R143	0.830	85	0%	88	23.9%	50	24%	-	-	-	NULL
ATG9A	79065	genome.wustl.edu	37	2	220087087	220087087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077198.1	-1	validated	p.R645M	1.000	19	0%	23	26.1%	57	43.8%	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
GLB1L	79411	genome.wustl.edu	37	2	220101934	220101934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024506.3	-1	provisional	p.D609Y	0.879	499	0.4%	424	17.7%	9	33.3%	possibly_damaging(0.898)	tolerated(0.07)	deleterious(0.673)	NULL
GLB1L	79411	genome.wustl.edu	37	2	220107604	220107604	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000440853	-1	known	p.G25V	0.964	248	0%	264	14.8%	2	0%	-	-	-	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases
STK16	8576	genome.wustl.edu	37	2	220111907	220111907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008910.2	+1	validated	p.W127R	0.004	251	0%	176	18.2%	70	32.8%	benign(0)	tolerated(0.78)	neutral(0.001)	superfamily_Kinase_like,HMMPfam_Pkinase
STK16	8576	genome.wustl.edu	37	2	220111954	220111954	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008910.2	+1	validated	p.K142	1.000	179	0%	149	22.8%	57	52.6%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
STK16	8576	genome.wustl.edu	37	2	220112194	220112194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008910.2	+1	validated	p.D166E	1.000	254	0%	260	18.5%	64	35.9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Kinase_like,HMMPfam_Pkinase
TUBA4A	7277	genome.wustl.edu	37	2	220115298	220115298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006000.1	-1	reviewed	p.V375M	1.000	159	0.6%	112	12.5%	152	32.2%	benign(0.186)	deleterious(0.02)	neutral(0.401)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
TUBA4A	7277	genome.wustl.edu	37	2	220116310	220116310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006000.1	-1	reviewed	p.V118L	1.000	397	0%	405	22.2%	63	38%	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
TUBA4A	7277	genome.wustl.edu	37	2	220116737	220116737	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006000.1	-1	reviewed	p.T73	0.952	328	0%	323	24.1%	58	44.8%	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
DNPEP	23549	genome.wustl.edu	37	2	220251417	220251417	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000429013	-1	known	p.R113W	0.996	64	0%	114	15.8%	111	29.7%	-	-	-	HMMPfam_Peptidase_M18,superfamily_Zn-dependent exopeptidases
SPEG	10290	genome.wustl.edu	37	2	220329178	220329178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005876.4	+1	validated	p.R910H	1.000	112	0%	70	32.9%	0	-	probably_damaging(0.988)	tolerated(0.06)	deleterious(0.760)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SPEG	10290	genome.wustl.edu	37	2	220341621	220341621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005876.4	+1	validated	p.D1493Y	1.000	141	0%	151	29.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SPEG	10290	genome.wustl.edu	37	2	220354243	220354243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005876.4	+1	validated	p.L2835F	0.997	51	0%	71	19.7%	1	0%	probably_damaging(0.962)	tolerated(0.28)	neutral(0.436)	NULL
GMPPA	29926	genome.wustl.edu	37	2	220370416	220370416	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000443704	+1	known	e9-1	0.889	207	0%	214	24.8%	3	0%	-	-	-	-
OBSL1	23363	genome.wustl.edu	37	2	220428201	220428201	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015311.2	-1	reviewed	p.F852	0.001	122	0%	134	28.4%	130	56.9%	-	-	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
INHA	3623	genome.wustl.edu	37	2	220439555	220439555	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002191.2	+1	reviewed	p.G136	0.973	29	0%	27	22.2%	3	100%	-	-	-	NULL
STK11IP	114790	genome.wustl.edu	37	2	220470445	220470445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000456909	+1	known	p.R245Q	0.036	179	0.6%	146	26.7%	12	33.3%	benign(0)	tolerated(0.31)	neutral(0.027)	superfamily_Outer arm dynein light chain 1
STK11IP	114790	genome.wustl.edu	37	2	220473425	220473425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000456909	+1	known	p.R575H	0.115	64	0%	58	19%	12	41.6%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
STK11IP	114790	genome.wustl.edu	37	2	220479901	220479901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000456909	+1	known	p.E985D	0.014	58	0%	62	16.1%	21	28.5%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	NULL
STK11IP	114790	genome.wustl.edu	37	2	220480023	220480023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000456909	+1	known	p.R1026H	0.857	44	0%	41	19.5%	19	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
SLC4A3	6508	genome.wustl.edu	37	2	220501536	220501536	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201574.2	+1	validated	p.E852	1.000	325	0%	240	26.7%	1	0%	-	-	-	HMMPfam_HCO3_cotransp
SLC4A3	6508	genome.wustl.edu	37	2	220505562	220505562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201574.2	+1	validated	p.A1194T	0.940	81	0%	82	20.7%	2	50%	benign(0.012)	tolerated(0.1)	neutral(0.287)	NULL
SGPP2	130367	genome.wustl.edu	37	2	223423493	223423493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152386.2	+1	provisional	p.R359M	0.673	213	0%	137	10.2%	58	36.2%	benign(0.261)	tolerated(0.1)	neutral(0.314)	NULL
ACSL3	2181	genome.wustl.edu	37	2	223783863	223783863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004457.3	+1	reviewed	p.G250S	1.000	178	0%	76	23.7%	15	53.3%	benign(0.008)	tolerated(0.22)	neutral(0.042)	HMMPfam_AMP-binding,superfamily_SSF56801
ACSL3	2181	genome.wustl.edu	37	2	223791824	223791824	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000463992	+1	known	NULL	0.998	346	0%	165	24.2%	26	38.4%	benign(0.059)	deleterious(0.02)	neutral(0.387)	-
SCG2	7857	genome.wustl.edu	37	2	224463027	224463027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003469.3	-1	reviewed	p.R325M	0.910	135	0%	106	26.4%	0	-	possibly_damaging(0.509)	deleterious(0.01)	deleterious(0.576)	HMMPfam_Granin
SCG2	7857	genome.wustl.edu	37	2	224463695	224463695	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003469.3	-1	reviewed	p.R102	0.867	468	0%	335	17.9%	0	-	-	-	-	HMMPfam_Granin
WDFY1	57590	genome.wustl.edu	37	2	224770671	224770671	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020830.3	-1	reviewed	p.T109	0.992	606	0%	246	17.5%	22	36.3%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
MRPL44	65080	genome.wustl.edu	37	2	224828559	224828559	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022915.3	+1	reviewed	p.L245	1.000	187	0%	247	27.1%	48	39.5%	-	-	-	superfamily_SSF54768
SERPINE2	5270	genome.wustl.edu	37	2	224849514	224849514	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136530.1	-1	validated	p.W292*	1.000	290	0%	93	18.3%	143	0%	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINE2	5270	genome.wustl.edu	37	2	224856586	224856586	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136530.1	-1	validated	p.F219V	0.985	248	0%	93	18.3%	151	93.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINE2	5270	genome.wustl.edu	37	2	224866620	224866620	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136530.1	-1	validated	p.T12P	1.000	196	0%	126	21.4%	21	0%	possibly_damaging(0.45)	-	-	NULL
FAM124B	79843	genome.wustl.edu	37	2	225266340	225266340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122779.1	-1	validated	p.S49I	0.705	73	0%	29	31%	0	-	probably_damaging(0.983)	tolerated(0.12)	deleterious(0.690)	NULL
DOCK10	55619	genome.wustl.edu	37	2	225664958	225664958	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000409802	-1	known	p.R198C	0.360	383	0.3%	82	17.1%	4	25%	-	-	-	NULL
DOCK10	55619	genome.wustl.edu	37	2	225688256	225688256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014689.2	-1	validated	p.T1049A	1.000	519	0%	241	24.5%	2	0%	benign(0.303)	tolerated(0.13)	neutral(0.347)	NULL
DOCK10	55619	genome.wustl.edu	37	2	225717835	225717835	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014689.2	-1	validated	p.C631	1.000	217	0%	111	22.5%	0	-	-	-	-	NULL
DOCK10	55619	genome.wustl.edu	37	2	225721591	225721591	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014689.2	-1	validated	p.V598	0.978	353	0%	230	24.3%	1	0%	-	-	-	NULL
DOCK10	55619	genome.wustl.edu	37	2	225739030	225739030	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014689.2	-1	validated	p.R352*	1.000	315	0%	148	16.2%	0	-	-	-	-	NULL
NYAP2	57624	genome.wustl.edu	37	2	226273745	226273745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020864.1	+1	validated	p.R50I	1.000	258	0%	53	22.6%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
NYAP2	57624	genome.wustl.edu	37	2	226447662	226447662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020864.1	+1	validated	p.P510L	1.000	11	0%	13	30.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IRS1	3667	genome.wustl.edu	37	2	227662757	227662757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005544.2	-1	reviewed	p.P233L	1.000	88	0%	106	33%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729
RHBDD1	84236	genome.wustl.edu	37	2	227731981	227731981	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032276.3	+1	validated	p.P171	0.979	884	0.1%	364	21.7%	7	28.5%	-	-	-	HMMPfam_Rhomboid
RHBDD1	84236	genome.wustl.edu	37	2	227771531	227771531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032276.3	+1	validated	p.A197T	1.000	383	0%	141	17.7%	13	23%	probably_damaging(0.969)	deleterious(0.02)	deleterious(0.794)	HMMPfam_Rhomboid
COL4A4	1286	genome.wustl.edu	37	2	227917120	227917120	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000092.4	-1	reviewed	p.G957*	0.996	278	0%	161	21.7%	0	-	-	-	-	HMMPfam_Collagen
COL4A4	1286	genome.wustl.edu	37	2	227924316	227924316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000092.4	-1	reviewed	p.P730S	1.000	72	0%	99	26.3%	0	-	probably_damaging(0.988)	tolerated(0.07)	deleterious(0.756)	NULL
COL4A3	1285	genome.wustl.edu	37	2	228118831	228118831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000091.3	+1	reviewed	p.L257I	0.967	295	0%	84	20.2%	1	100%	probably_damaging(0.982)	tolerated(0.5)	neutral(0.436)	NULL
COL4A3	1285	genome.wustl.edu	37	2	228162516	228162516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000091.3	+1	reviewed	p.G1231D	0.981	59	0%	44	27.3%	0	-	unknown(0)	tolerated(0.13)	-	HMMPfam_Collagen
MFF	56947	genome.wustl.edu	37	2	228205057	228205057	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000436791	+1	known	p.C122*	1.000	278	0%	120	24.2%	88	48.8%	possibly_damaging(0.909)	deleterious(0.02)	deleterious(0.745)	HMMPfam_DUF800
C2orf83	56918	genome.wustl.edu	37	2	228476324	228476324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020161.3	-1	validated	p.K80R	0.164	208	0%	270	15.9%	0	-	benign(0.004)	-	-	NULL
SLC19A3	80704	genome.wustl.edu	37	2	228560794	228560794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025243.3	-1	reviewed	p.A328V	0.999	131	0%	57	15.8%	4	0%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_Folate_carrier,superfamily_MFS_gen_substrate_transporter
PID1	55022	genome.wustl.edu	37	2	229890744	229890744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017933.4	-1	validated	p.W117C	1.000	104	0%	41	24.4%	1	100%	possibly_damaging(0.688)	deleterious(0)	deleterious(0.691)	NULL
TRIP12	9320	genome.wustl.edu	37	2	230632326	230632326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004238.1	-1	provisional	p.R1975C	1.000	340	0%	176	13.1%	195	17.9%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
TRIP12	9320	genome.wustl.edu	37	2	230633360	230633360	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004238.1	-1	provisional	p.V1918	1.000	355	0%	197	20.3%	118	29.6%	-	-	-	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
FBXO36	130888	genome.wustl.edu	37	2	230841054	230841054	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174899.4	+1	validated	p.S65*	0.001	212	0%	93	16.1%	5	20%	-	-	-	NULL
SP110	3431	genome.wustl.edu	37	2	231033860	231033860	+	Missense_Mutation	SNP	C	C	T	rs181058279	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080424.2	-1	reviewed	p.G708S	0.000	252	0%	107	25.2%	8	12.5%	benign(0)	tolerated(0.93)	-	NULL
SP110	3431	genome.wustl.edu	37	2	231037655	231037655	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080424.2	-1	reviewed	p.C537	0.866	135	0%	76	14.5%	3	66.6%	-	-	-	HMMSmart_SM00249,superfamily_SAND domain-like,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
SP140	11262	genome.wustl.edu	37	2	231174668	231174668	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007237.4	+1	validated	p.C696	0.128	604	0%	591	21.8%	11	18.1%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
SP100	6672	genome.wustl.edu	37	2	231307780	231307780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080391.1	+1	validated	p.R79H	0.921	300	0%	154	26%	57	28%	benign(0.015)	deleterious(0)	neutral(0.445)	HMMPfam_Sp100
SP100	6672	genome.wustl.edu	37	2	231367802	231367802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080391.1	+1	validated	p.P581L	0.000	380	0%	115	20%	15	26.6%	probably_damaging(0.998)	tolerated(0.24)	deleterious(0.512)	NULL
SP100	6672	genome.wustl.edu	37	2	231380328	231380328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003113.3	+1	validated	p.E871D	0.998	182	0%	46	19.6%	15	40%	unknown(0)	tolerated(0.25)	-	NULL
CAB39	51719	genome.wustl.edu	37	2	231683287	231683287	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130849.1	+1	validated	p.N298	1.000	316	0%	206	24.3%	43	34.8%	-	-	-	HMMPfam_Mo25,superfamily_ARM repeat
GPR55	9290	genome.wustl.edu	37	2	231775145	231775145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005683.3	-1	validated	p.S178N	0.034	150	0.7%	78	19.2%	0	-	possibly_damaging(0.88)	tolerated(0.23)	neutral(0.385)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NCL	4691	genome.wustl.edu	37	2	232324978	232324978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005381.2	-1	reviewed	p.L309I	0.716	291	0%	255	20.4%	476	44.1%	benign(0.038)	tolerated(0.07)	neutral(0.321)	HMMSmart_RRM,superfamily_SSF54928
C2orf57	165100	genome.wustl.edu	37	2	232457684	232457684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152614.2	+1	validated	p.L8M	0.000	67	0%	54	14.8%	0	-	benign(0.038)	-	-	NULL
ALPPL2	251	genome.wustl.edu	37	2	233272711	233272711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031313.2	+1	reviewed	p.S211Y	0.786	41	0%	33	21.2%	2326	51.4%	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core
ECEL1	9427	genome.wustl.edu	37	2	233347298	233347298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004826.2	-1	validated	p.A569V	1.000	59	0%	78	16.7%	3	0%	possibly_damaging(0.8)	tolerated(0.84)	neutral(0.301)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
CHRND	1144	genome.wustl.edu	37	2	233391346	233391346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000751.1	+1	reviewed	p.V54I	0.001	30	0%	54	18.5%	0	-	benign(0.024)	tolerated(0.17)	neutral(0.060)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
CHRNG	1146	genome.wustl.edu	37	2	233407995	233407995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005199.4	+1	reviewed	p.Q272H	1.000	111	0%	150	18.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
KCNJ13	3769	genome.wustl.edu	37	2	233635851	233635851	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000444142	-1	known	p.L42M	1.000	457	0%	120	10.8%	0	-	-	-	-	HMMPfam_IRK,superfamily_Voltage-gated potassium channels
GIGYF2	26058	genome.wustl.edu	37	2	233675969	233675969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001103147.1	+1	reviewed	p.Q659H	0.999	278	0%	173	29.5%	14	28.5%	probably_damaging(0.976)	tolerated(0.23)	neutral(0.459)	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233697630	233697630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001103147.1	+1	reviewed	p.R886W	1.000	72	0%	47	14.9%	19	15.7%	unknown(0)	deleterious(0)	-	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233710595	233710595	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001103147.1	+1	reviewed	p.D1174	1.000	270	0%	192	20.3%	21	23.8%	-	-	-	NULL
NGEF	25791	genome.wustl.edu	37	2	233757668	233757668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019850.2	-1	validated	p.S361Y	0.672	216	0%	184	22.8%	3	33.3%	benign(0.244)	deleterious(0.03)	neutral(0.389)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
NGEF	25791	genome.wustl.edu	37	2	233834931	233834931	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019850.2	-1	validated	p.E126*	0.000	447	0%	210	18.1%	0	-	-	-	-	NULL
INPP5D	3635	genome.wustl.edu	37	2	234056167	234056167	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000359570	+1	known	p.D319	0.995	169	0%	89	20.2%	4	0%	-	-	-	NULL
INPP5D	3635	genome.wustl.edu	37	2	234098544	234098544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000359570	+1	known	p.L803I	1.000	482	0.2%	337	20.8%	12	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ATG16L1	55054	genome.wustl.edu	37	2	234201051	234201051	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030803.6	+1	validated	p.C533	0.985	427	0%	240	18.8%	28	46.4%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
SAG	6295	genome.wustl.edu	37	2	234238164	234238164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000541.4	+1	reviewed	p.P225H	1.000	281	0%	134	17.2%	0	-	possibly_damaging(0.558)	tolerated(0.06)	deleterious(0.513)	HMMPfam_Arrestin_C,superfamily_Ig_E-set
DGKD	8527	genome.wustl.edu	37	2	234371341	234371341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152879.2	+1	reviewed	p.R1049H	1.000	122	0%	119	22.7%	4	50%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
USP40	55230	genome.wustl.edu	37	2	234421267	234421267	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018218.2	-1	validated	p.A806	0.992	176	0%	90	13.3%	7	42.8%	-	-	-	NULL
USP40	55230	genome.wustl.edu	37	2	234434130	234434130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018218.2	-1	validated	p.L613I	0.939	519	0%	152	17.8%	7	28.5%	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	NULL
USP40	55230	genome.wustl.edu	37	2	234434150	234434150	+	Missense_Mutation	SNP	C	C	T	rs190323051	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018218.2	-1	validated	p.G606E	1.000	557	0%	168	17.3%	6	33.3%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	NULL
USP40	55230	genome.wustl.edu	37	2	234457783	234457783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000435959	-1	known	p.L310S	1.000	131	0%	73	20.5%	1	0%	unknown(0)	-	-	NULL
UGT1A5	54579	genome.wustl.edu	37	2	234621873	234621873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019078.1	+1	reviewed	p.T79M	0.000	246	0%	203	24.1%	0	-	possibly_damaging(0.505)	deleterious(0.03)	deleterious(0.533)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A3	54659	genome.wustl.edu	37	2	234638466	234638466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019093.2	+1	reviewed	p.A232T	0.180	802	0%	680	24.3%	0	-	possibly_damaging(0.736)	tolerated(0.09)	deleterious(0.566)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
DNAJB3	414061	genome.wustl.edu	37	2	234652268	234652268	+	Missense_Mutation	SNP	C	C	T	rs146398257	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001394.3	-1	validated	p.V99I	0.998	44	0%	55	23.6%	0	-	-	-	-	superfamily_DnaJ_N
UGT1A1	54658	genome.wustl.edu	37	2	234669401	234669401	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000463.2	+1	reviewed	p.C156	0.988	196	0%	211	17.1%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SPP2	6694	genome.wustl.edu	37	2	234969049	234969049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006944.2	+1	reviewed	p.A124T	0.000	76	1.3%	30	13.3%	0	-	benign(0.395)	tolerated(0.25)	neutral(0.164)	HMMPfam_Spp-24,superfamily_Cystatin/monellin
SPP2	6694	genome.wustl.edu	37	2	234975182	234975182	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006944.2	+1	reviewed	p.I150M	0.999	570	0%	349	18.3%	0	-	benign(0.006)	tolerated(0.42)	neutral(0.014)	HMMPfam_Spp-24
SH3BP4	23677	genome.wustl.edu	37	2	235949682	235949682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014521.2	+1	reviewed	p.G90D	0.989	237	0%	207	27.1%	17	47%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
SH3BP4	23677	genome.wustl.edu	37	2	235950712	235950712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014521.2	+1	reviewed	p.S433R	0.881	42	0%	34	20.6%	17	47%	possibly_damaging(0.846)	tolerated(0.13)	deleterious(0.578)	NULL
SH3BP4	23677	genome.wustl.edu	37	2	235951030	235951030	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014521.2	+1	reviewed	p.V539	0.700	142	0%	123	22%	22	31.8%	-	-	-	NULL
ASB18	401036	genome.wustl.edu	37	2	237103676	237103676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_212556.2	-1	provisional	p.L414I	0.491	218	0%	139	23.7%	0	-	possibly_damaging(0.608)	tolerated(0.14)	neutral(0.460)	NULL
CXCR7	57007	genome.wustl.edu	37	2	237489807	237489807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020311.2	+1	reviewed	p.F233L	1.000	73	0%	62	19.4%	56	33.9%	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
COPS8	10920	genome.wustl.edu	37	2	237998506	237998506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006710.4	+1	reviewed	p.A67V	1.000	138	0%	144	26.4%	46	41.3%	possibly_damaging(0.907)	deleterious(0.02)	deleterious(0.744)	HMMPfam_PCI_Csn8
COL6A3	1293	genome.wustl.edu	37	2	238253360	238253360	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004369.3	-1	reviewed	p.I2434S	0.999	113	0.9%	62	27.4%	11	0%	probably_damaging(0.999)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A3	1293	genome.wustl.edu	37	2	238277659	238277659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004369.3	-1	reviewed	p.D1483N	0.011	177	0%	127	19.7%	4	0%	unknown(0)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A3	1293	genome.wustl.edu	37	2	238303483	238303483	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004369.3	-1	reviewed	p.G152	0.663	217	0%	74	28.4%	1	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
MLPH	79083	genome.wustl.edu	37	2	238449154	238449154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024101.5	+1	reviewed	p.P423H	0.000	84	0%	58	25.9%	35	51.4%	possibly_damaging(0.653)	tolerated(0.09)	deleterious(0.526)	NULL
LRRFIP1	9208	genome.wustl.edu	37	2	238601158	238601158	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001137552.1	+1	validated	p.Q20	0.572	19	0%	18	27.8%	7	28.5%	-	-	-	NULL
LRRFIP1	9208	genome.wustl.edu	37	2	238671370	238671370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001137552.1	+1	validated	p.E338D	0.008	218	0%	119	19.3%	40	40%	possibly_damaging(0.797)	tolerated(0.52)	neutral(0.308)	HMMPfam_DUF2051
ESPNL	339768	genome.wustl.edu	37	2	239040287	239040287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194312.2	+1	validated	p.N978D	1.000	23	0%	17	23.5%	3	33.3%	benign(0.144)	deleterious(0.01)	neutral(0.418)	NULL
ILKAP	80895	genome.wustl.edu	37	2	239082232	239082232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030768.2	-1	reviewed	p.R300H	1.000	134	0%	123	22.8%	93	35.4%	possibly_damaging(0.539)	tolerated(0.2)	neutral(0.231)	HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C
ILKAP	80895	genome.wustl.edu	37	2	239090710	239090710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030768.2	-1	reviewed	p.V278I	1.000	745	0%	372	23.9%	82	41.4%	probably_damaging(0.982)	tolerated(0.11)	deleterious(0.698)	HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C
PER2	8864	genome.wustl.edu	37	2	239161713	239161713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022817.2	-1	reviewed	p.R984H	0.998	71	0%	70	25.7%	5	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PER2	8864	genome.wustl.edu	37	2	239170966	239170966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022817.2	-1	reviewed	p.Q391H	1.000	161	0%	131	19.1%	4	25%	unknown(0)	tolerated(0.06)	-	HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain)
PER2	8864	genome.wustl.edu	37	2	239177590	239177590	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022817.2	-1	reviewed	p.E266	1.000	277	0%	188	20.2%	3	33.3%	-	-	-	NULL
TRAF3IP1	26146	genome.wustl.edu	37	2	239237349	239237349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015650.3	+1	validated	p.R126L	1.000	261	0%	202	18.8%	15	60%	benign(0.08)	deleterious(0.02)	neutral(0.389)	HMMPfam_MIP-T3
TRAF3IP1	26146	genome.wustl.edu	37	2	239237683	239237683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015650.3	+1	validated	p.K205N	0.760	359	0%	283	17.7%	16	43.7%	benign(0.348)	deleterious(0.03)	deleterious(0.474)	HMMPfam_MIP-T3
TRAF3IP1	26146	genome.wustl.edu	37	2	239264687	239264687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015650.3	+1	validated	p.E552G	1.000	196	0%	172	25.6%	23	52.1%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_MIP-T3
ASB1	51665	genome.wustl.edu	37	2	239353086	239353086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040445.1	+1	reviewed	p.A200T	0.999	28	0%	54	22.2%	26	38.4%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ASB1	51665	genome.wustl.edu	37	2	239353216	239353216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040445.1	+1	reviewed	p.V243A	0.998	88	0%	84	19%	23	47.8%	probably_damaging(0.999)	tolerated(0.56)	deleterious(0.497)	HMMPfam_Ank,superfamily_ANK
HDAC4	9759	genome.wustl.edu	37	2	239976475	239976475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006037.3	-1	reviewed	p.R1015C	0.982	278	0%	380	19.7%	3	33.3%	benign(0.004)	tolerated(0.06)	neutral(0.323)	superfamily_Arginase/deacetylase
HDAC4	9759	genome.wustl.edu	37	2	240005917	240005917	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006037.3	-1	reviewed	p.S817	0.673	55	0%	56	25%	3	0%	-	-	-	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
NDUFA10	4705	genome.wustl.edu	37	2	240954217	240954217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004544.3	-1	reviewed	p.L203P	1.000	230	0%	207	22.7%	146	33.5%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_dNK,superfamily_SSF52540
NDUFA10	4705	genome.wustl.edu	37	2	240960685	240960685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004544.3	-1	reviewed	p.R130H	1.000	194	0%	230	11.7%	99	15.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_SSF52540
OR6B3	150681	genome.wustl.edu	37	2	240984525	240984525	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173351.1	-1	provisional	p.L322R	0.000	49	0%	76	27.6%	0	-	benign(0.23)	deleterious(0)	neutral(0.468)	superfamily_SSF81321
OR6B3	150681	genome.wustl.edu	37	2	240985226	240985226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173351.1	-1	provisional	p.Q88H	0.017	248	0%	198	14.6%	0	-	benign(0.011)	tolerated(0.14)	neutral(0.250)	HMMPfam_7tm_1,superfamily_SSF81321
GPC1	2817	genome.wustl.edu	37	2	241404337	241404337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002081.2	+1	reviewed	p.R360L	0.001	31	0%	25	32%	46	28.2%	benign(0.403)	tolerated(0.47)	neutral(0.141)	HMMPfam_Glypican
RNPEPL1	57140	genome.wustl.edu	37	2	241517197	241517197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018226.3	+1	provisional	p.T458M	0.000	19	0%	18	22.2%	143	39.1%	benign(0.085)	deleterious(0.03)	neutral(0.370)	NULL
CAPN10	11132	genome.wustl.edu	37	2	241531372	241531372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023083.2	+1	reviewed	p.L165M	0.842	58	0%	56	26.8%	16	25%	unknown(0)	deleterious(0)	-	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
CAPN10	11132	genome.wustl.edu	37	2	241531519	241531519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000270361	+1	known	p.P210L	0.908	21	0%	24	41.7%	6	50%	unknown(0)	deleterious(0)	-	HMMSmart_CysPc
CAPN10	11132	genome.wustl.edu	37	2	241533435	241533435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000270361	+1	known	p.A264T	0.632	52	0%	60	25%	4	25%	unknown(0)	-	-	NULL
AQP12B	653437	genome.wustl.edu	37	2	241621970	241621970	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102467.1	-1	validated	p.T95	0.005	74	0%	65	16.9%	0	-	-	-	-	superfamily_MIP
KIF1A	547	genome.wustl.edu	37	2	241660404	241660404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004321.4	-1	reviewed	p.G1498R	0.314	60	0%	53	26.4%	5	40%	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
KIF1A	547	genome.wustl.edu	37	2	241660425	241660425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004321.4	-1	reviewed	p.D1491N	1.000	63	0%	68	27.9%	4	50%	possibly_damaging(0.888)	tolerated(0.18)	neutral(0.403)	NULL
KIF1A	547	genome.wustl.edu	37	2	241661268	241661268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004321.4	-1	reviewed	p.E1466K	1.000	132	0%	114	19.3%	8	37.5%	benign(0.028)	tolerated(0.43)	neutral(0.015)	NULL
KIF1A	547	genome.wustl.edu	37	2	241679550	241679550	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004321.4	-1	reviewed	p.R1175*	1.000	71	0%	64	20.3%	3	66.6%	-	-	-	NULL
KIF1A	547	genome.wustl.edu	37	2	241684863	241684863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004321.4	-1	reviewed	p.G1048D	1.000	218	0%	159	21.4%	3	66.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
AGXT	189	genome.wustl.edu	37	2	241810793	241810793	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000030.2	+1	reviewed	p.L151	0.997	52	0%	41	14.6%	0	-	-	-	-	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
AGXT	189	genome.wustl.edu	37	2	241816983	241816983	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000030.2	+1	reviewed	p.R292	0.196	27	0%	18	38.9%	0	-	-	-	-	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
MTERFD2	130916	genome.wustl.edu	37	2	242035461	242035461	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182501.3	-1	validated	p.D366	0.086	1025	0%	798	25.2%	46	52.1%	-	-	-	NULL
MTERFD2	130916	genome.wustl.edu	37	2	242038945	242038945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182501.3	-1	validated	p.S129L	0.740	168	0%	199	23.1%	10	30%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_mTERF
PASK	23178	genome.wustl.edu	37	2	242051780	242051780	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015148.2	-1	validated	p.I1136	0.012	149	0%	144	25.7%	11	100%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HDLBP	3069	genome.wustl.edu	37	2	242174616	242174616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005336.3	-1	validated	p.G1022C	1.000	84	0%	73	19.2%	359	38.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
HDLBP	3069	genome.wustl.edu	37	2	242196045	242196045	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000373292	-1	known	p.P87S	1.000	487	0%	292	18.8%	90	34.4%	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
FARP2	9855	genome.wustl.edu	37	2	242422884	242422884	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014808.2	+1	validated	p.F756Y	1.000	209	0%	93	18.3%	7	14.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
D2HGDH	728294	genome.wustl.edu	37	2	242695407	242695407	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000445308	+1	known	p.T227M	0.677	12	0%	19	31.6%	44	36.3%	-	-	-	HMMPfam_FAD-oxidase_C,superfamily_FAD-linked oxidases C-terminal domain
PDCD1	5133	genome.wustl.edu	37	2	242794865	242794865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005018.2	-1	reviewed	p.R115H	0.398	59	0%	48	20.8%	13	0%	probably_damaging(0.981)	tolerated(0.06)	deleterious(0.748)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
LOC728323	728323	genome.wustl.edu	37	2	243056893	243056893	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_024437.1	+1	validated	NULL	1.000	121	0%	69	11.6%	0	-	-	-	-	-
CHL1	10752	genome.wustl.edu	37	3	369897	369897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006614.2	+1	reviewed	p.R82Q	0.996	394	0%	213	45.5%	0	-	benign(0.235)	deleterious(0)	neutral(0.468)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
CHL1	10752	genome.wustl.edu	37	3	383756	383756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006614.2	+1	reviewed	p.V224F	1.000	165	0%	103	18.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,superfamily_Immunoglobulin
CNTN6	27255	genome.wustl.edu	37	3	1189744	1189744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014461.2	+1	reviewed	p.A18T	0.945	449	0%	232	15.9%	0	-	benign(0.327)	tolerated(0.06)	neutral(0.425)	NULL
CNTN6	27255	genome.wustl.edu	37	3	1369156	1369156	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014461.2	+1	reviewed	p.E367*	0.999	332	0%	50	16%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CNTN6	27255	genome.wustl.edu	37	3	1424985	1424985	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014461.2	+1	reviewed	p.L804	0.951	361	0%	233	19.7%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CNTN4	152330	genome.wustl.edu	37	3	2787346	2787346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175607.1	+1	reviewed	p.T108I	1.000	305	0%	165	10.3%	0	-	possibly_damaging(0.886)	tolerated(0.06)	deleterious(0.669)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CNTN4	152330	genome.wustl.edu	37	3	2942455	2942455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175607.1	+1	reviewed	p.P343S	1.000	322	0.3%	209	21.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CNTN4	152330	genome.wustl.edu	37	3	3078983	3078983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175607.1	+1	reviewed	p.P688H	1.000	141	0%	39	10.3%	0	-	possibly_damaging(0.586)	deleterious(0)	deleterious(0.647)	superfamily_Fibronectin type III
CNTN4	152330	genome.wustl.edu	37	3	3081795	3081795	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175607.1	+1	reviewed	p.I746	0.986	290	0%	91	18.7%	2	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CNTN4	152330	genome.wustl.edu	37	3	3081828	3081828	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175607.1	+1	reviewed	p.A757	1.000	260	0.4%	69	14.5%	3	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TRNT1	51095	genome.wustl.edu	37	3	3189343	3189343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182916.2	+1	validated	p.D338Y	0.943	126	0%	134	18.7%	10	20%	possibly_damaging(0.785)	deleterious(0.02)	deleterious(0.677)	superfamily_Poly A polymerase C-terminal region-like
SUMF1	285362	genome.wustl.edu	37	3	4494673	4494673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182760.3	-1	reviewed	p.D111Y	1.000	213	0%	167	22.8%	18	44.4%	possibly_damaging(0.721)	deleterious(0)	deleterious(0.706)	HMMPfam_DUF323
ITPR1	3708	genome.wustl.edu	37	3	4726861	4726861	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099952.2	+1	reviewed	p.L1216	1.000	102	0%	45	11.1%	1	0%	-	-	-	HMMPfam_RYDR_ITPR
GRM7	2917	genome.wustl.edu	37	3	6903450	6903450	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181874.2	+1	reviewed	p.A125	1.000	101	0%	126	27%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
GRM7	2917	genome.wustl.edu	37	3	7620310	7620310	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181874.2	+1	reviewed	p.R573*	1.000	216	0.5%	109	22.9%	0	-	-	-	-	NULL
LMCD1	29995	genome.wustl.edu	37	3	8590323	8590323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014583.2	+1	reviewed	p.R153C	1.000	76	0%	37	18.9%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PET
OXTR	5021	genome.wustl.edu	37	3	8794732	8794732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000916.3	-1	reviewed	p.N367K	1.000	62	0%	46	28.3%	0	-	unknown(0)	tolerated(0.38)	-	superfamily_Family A G protein-coupled receptor-like
SRGAP3	9901	genome.wustl.edu	37	3	9166519	9166519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014850.2	-1	validated	p.Q50H	1.000	97	0%	117	24.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_FCH,HMMSmart_SM00055
SETD5	55209	genome.wustl.edu	37	3	9486910	9486910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080517.1	+1	provisional	p.E456K	0.978	429	0%	164	20.1%	5	20%	benign(0.025)	tolerated(0.16)	neutral(0.060)	NULL
SETD5	55209	genome.wustl.edu	37	3	9517666	9517666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080517.1	+1	provisional	p.A1407V	1.000	104	0%	48	29.2%	40	25%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
MTMR14	64419	genome.wustl.edu	37	3	9730665	9730665	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077525.2	+1	reviewed	p.S444	0.250	46	0%	70	21.4%	68	38.2%	-	-	-	NULL
BRPF1	7862	genome.wustl.edu	37	3	9780979	9780979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003694.1	+1	reviewed	p.A299V	1.000	102	0%	76	28.9%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD
BRPF1	7862	genome.wustl.edu	37	3	9781215	9781215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003694.1	+1	reviewed	p.P378S	1.000	74	0%	62	22.6%	11	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BRPF1	7862	genome.wustl.edu	37	3	9788073	9788073	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003694.1	+1	reviewed	p.E1138	1.000	190	0%	216	26.9%	23	17.3%	-	-	-	HMMPfam_PWWP,HMMSmart_PWWP,superfamily_SSF63748
CAMK1	8536	genome.wustl.edu	37	3	9803388	9803388	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000421120	-1	known	p.R8*	0.434	242	0%	200	25%	44	36.3%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TTLL3	26140	genome.wustl.edu	37	3	9860507	9860507	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000310252	+1	known	p.G100*	1.000	263	0%	164	22%	3	66.6%	benign(0.032)	tolerated(1)	neutral(0.002)	NULL
JAGN1	84522	genome.wustl.edu	37	3	9934963	9934963	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032492.3	+1	validated	p.L152	0.991	441	0.2%	294	18.4%	120	36.6%	-	-	-	HMMPfam_DUF1352
IL17RC	84818	genome.wustl.edu	37	3	9959183	9959183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153461.2	+1	reviewed	p.V62I	0.828	193	0%	252	19.4%	0	-	benign(0.003)	tolerated(0.1)	neutral(0.286)	NULL
FANCD2	2177	genome.wustl.edu	37	3	10134990	10134990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033084.3	+1	reviewed	p.L1291M	1.000	839	0%	389	22.1%	20	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FANCD2	2177	genome.wustl.edu	37	3	10142924	10142924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018115.1	+1	reviewed	p.E1445A	0.929	587	0%	457	17.1%	27	22.2%	possibly_damaging(0.875)	-	-	NULL
C3orf24	115795	genome.wustl.edu	37	3	10146027	10146027	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173472.1	-1	validated	p.Q144	1.000	288	0%	272	21%	0	-	-	-	-	NULL
IRAK2	3656	genome.wustl.edu	37	3	10268100	10268100	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001570.3	+1	reviewed	p.R419*	0.582	280	0%	265	21.5%	1	0%	-	-	-	superfamily_Kinase_like
SLC6A1	6529	genome.wustl.edu	37	3	11059079	11059079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003042.3	+1	validated	p.A61V	1.000	98	0%	109	14.7%	0	-	probably_damaging(0.966)	tolerated(0.86)	neutral(0.408)	HMMPfam_SNF
SLC6A1	6529	genome.wustl.edu	37	3	11061987	11061987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003042.3	+1	validated	p.S187N	1.000	142	0%	124	26.6%	0	-	benign(0.005)	deleterious(0.02)	neutral(0.383)	HMMPfam_SNF
TSEN2	80746	genome.wustl.edu	37	3	12533698	12533698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145392.1	+1	reviewed	p.L85M	0.976	313	0%	220	21.4%	9	33.3%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	NULL
RAF1	5894	genome.wustl.edu	37	3	12650274	12650274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002880.3	-1	reviewed	p.R191I	1.000	276	0%	203	26.6%	42	50%	benign(0.286)	tolerated(0.19)	neutral(0.138)	NULL
CAND2	23066	genome.wustl.edu	37	3	12854863	12854863	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012298.2	+1	validated	p.E235*	1.000	658	0%	487	21.6%	1	0%	-	-	-	superfamily_ARM-type_fold
IQSEC1	9922	genome.wustl.edu	37	3	12956624	12956624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014869.4	-1	validated	p.L738M	0.998	99	0%	84	21.4%	2	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_PH domain-like
NUP210	23225	genome.wustl.edu	37	3	13363788	13363788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024923.2	-1	reviewed	p.T1607I	0.972	194	0%	108	16.7%	63	33.3%	benign(0.159)	deleterious(0.02)	neutral(0.397)	NULL
FBLN2	2199	genome.wustl.edu	37	3	13659623	13659623	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004019.1	+1	reviewed	p.E593*	0.857	42	0%	42	16.7%	14	7.1%	-	-	-	NULL
FBLN2	2199	genome.wustl.edu	37	3	13663337	13663337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004019.1	+1	reviewed	p.L740M	0.905	180	0%	163	13.5%	1	0%	probably_damaging(0.961)	tolerated(0.13)	deleterious(0.657)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBLN2	2199	genome.wustl.edu	37	3	13679275	13679275	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004019.1	+1	reviewed	p.A1184	1.000	50	0%	57	22.8%	27	0%	-	-	-	NULL
TMEM43	79188	genome.wustl.edu	37	3	14180710	14180710	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024334.2	+1	reviewed	p.S305T	0.935	156	0.6%	100	29%	39	56.4%	benign(0)	tolerated(0.6)	neutral(0.004)	HMMPfam_DUF1625
TMEM43	79188	genome.wustl.edu	37	3	14180779	14180779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024334.2	+1	reviewed	p.R328W	0.932	148	0%	119	26.1%	48	41.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DUF1625
LSM3	27258	genome.wustl.edu	37	3	14239590	14239590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000306024	+1	known	p.V95I	0.817	459	0%	193	24.4%	259	38.2%	possibly_damaging(0.532)	tolerated(0.81)	neutral(0.180)	HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins
GRIP2	80852	genome.wustl.edu	37	3	14537957	14537957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080423.1	-1	provisional	p.L1029M	1.000	57	0%	62	16.1%	0	-	-	-	-	superfamily_PDZ domain-like
GRIP2	80852	genome.wustl.edu	37	3	14545152	14545152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080423.1	-1	provisional	p.E965D	1.000	32	0%	47	25.5%	0	-	-	-	-	NULL
GRIP2	80852	genome.wustl.edu	37	3	14558622	14558622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080423.1	-1	provisional	p.R517Q	0.984	579	0%	369	22.5%	1	0%	-	-	-	NULL
C3orf19	51244	genome.wustl.edu	37	3	14712430	14712430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016474.4	+1	validated	p.R378K	0.996	63	0%	38	36.8%	14	21.4%	benign(0.08)	tolerated(0.54)	neutral(0.013)	NULL
C3orf20	84077	genome.wustl.edu	37	3	14725751	14725751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032137.4	+1	validated	p.G163C	0.970	346	0%	223	24.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FGD5	152273	genome.wustl.edu	37	3	14862067	14862067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152536.3	+1	validated	p.V497I	1.000	53	0%	59	23.7%	4	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
FGD5	152273	genome.wustl.edu	37	3	14863053	14863053	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000457774	+1	known	p.L39F	1.000	60	0%	99	19.2%	1	0%	-	-	-	NULL
FGD5	152273	genome.wustl.edu	37	3	14958761	14958761	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152536.3	+1	validated	p.N1137	0.897	150	0%	125	16%	7	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
MRPS25	64432	genome.wustl.edu	37	3	15093974	15093974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022497.3	-1	reviewed	p.A166T	0.000	197	0%	142	23.2%	54	20.3%	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
MRPS25	64432	genome.wustl.edu	37	3	15094928	15094928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022497.3	-1	reviewed	p.K96N	0.712	446	0%	447	20.1%	49	55.1%	benign(0.011)	tolerated(0.17)	neutral(0.059)	NULL
MRPS25	64432	genome.wustl.edu	37	3	15100934	15100934	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022497.3	-1	reviewed	p.W61*	1.000	287	0.3%	305	23.3%	45	24.4%	-	-	-	HMMPfam_L51_S25_CI-B8
ZFYVE20	64145	genome.wustl.edu	37	3	15115883	15115883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022340.2	-1	validated	p.K587N	0.000	237	0%	154	22.7%	9	22.2%	benign(0.026)	tolerated(0.06)	neutral(0.324)	NULL
CAPN7	23473	genome.wustl.edu	37	3	15262445	15262445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014296.2	+1	reviewed	p.A199T	0.998	193	0%	96	22.9%	15	40%	benign(0.007)	tolerated(0.43)	neutral(0.013)	NULL
CAPN7	23473	genome.wustl.edu	37	3	15274172	15274172	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000415565	+1	known	p.Q131*	0.743	237	0%	115	17.4%	15	66.6%	-	-	-	HMMSmart_SM00230,superfamily_Cysteine proteinases
METTL6	131965	genome.wustl.edu	37	3	15467851	15467851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152396.2	-1	validated	p.F56L	1.000	456	0%	415	13.5%	15	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
HACL1	26061	genome.wustl.edu	37	3	15624437	15624437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012260.2	-1	validated	p.T205M	0.000	188	0.5%	93	20.4%	13	23%	benign(0)	tolerated(0.05)	neutral(0.345)	HMMPfam_TPP_enzyme_M,superfamily_SSF52467
BTD	686	genome.wustl.edu	37	3	15642991	15642991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000417015	+1	known	p.S27I	0.000	91	0%	114	21.1%	14	35.7%	unknown(0)	-	-	NULL
BTD	686	genome.wustl.edu	37	3	15677129	15677129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000060.2	+1	reviewed	p.E81D	0.136	205	0%	75	20%	15	40%	benign(0.009)	tolerated(0.16)	neutral(0.060)	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase
BTD	686	genome.wustl.edu	37	3	15686740	15686740	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000060.2	+1	reviewed	p.A459	0.998	272	0%	101	9.9%	13	38.4%	-	-	-	NULL
ANKRD28	23243	genome.wustl.edu	37	3	15721007	15721007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015199.2	-1	provisional	p.A788D	1.000	359	0.3%	117	29.1%	17	41.1%	benign(0.006)	tolerated(0.08)	neutral(0.300)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD28	23243	genome.wustl.edu	37	3	15755111	15755111	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015199.2	-1	provisional	p.T341	0.427	235	0%	45	26.7%	8	25%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
GALNTL2	117248	genome.wustl.edu	37	3	16216835	16216835	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_054110.4	+1	validated	p.L59	1.000	216	0%	179	19%	0	-	-	-	-	NULL
GALNTL2	117248	genome.wustl.edu	37	3	16216907	16216907	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_054110.4	+1	validated	p.G83	0.984	133	0%	129	15.5%	0	-	-	-	-	NULL
DPH3	285381	genome.wustl.edu	37	3	16302333	16302333	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206831.2	-1	reviewed	p.Q63*	1.000	411	0%	260	15.8%	32	18.7%	-	-	-	NULL
RFTN1	23180	genome.wustl.edu	37	3	16419458	16419458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015150.1	-1	validated	p.A198V	0.001	197	0%	115	20.9%	16	18.7%	benign(0.001)	tolerated(0.6)	neutral(0.004)	NULL
PLCL2	23228	genome.wustl.edu	37	3	17052197	17052197	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000419842	+1	known	p.P71H	1.000	274	0%	67	17.9%	4	0%	-	-	-	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
PLCL2	23228	genome.wustl.edu	37	3	17056367	17056367	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000419842	+1	known	p.R612Q	0.021	416	0%	105	31.4%	7	57.1%	-	-	-	NULL
TBC1D5	9779	genome.wustl.edu	37	3	17226642	17226642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134381.1	-1	validated	p.A626V	1.000	243	0%	55	10.9%	7	0%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	NULL
TBC1D5	9779	genome.wustl.edu	37	3	17550098	17550098	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134381.1	-1	validated	e1-1	0.241	183	0%	83	26.5%	0	-	-	-	-	-
KCNH8	131096	genome.wustl.edu	37	3	19492884	19492884	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144633.2	+1	reviewed	p.L605	1.000	161	0%	61	23%	0	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
EFHB	151651	genome.wustl.edu	37	3	19924193	19924193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144715.3	-1	validated	p.R726Q	0.998	277	0%	105	21.9%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	superfamily_EF-hand
EFHB	151651	genome.wustl.edu	37	3	19940338	19940338	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144715.3	-1	validated	e8-1	1.000	348	0%	160	13.1%	0	-	-	-	-	-
RAB5A	5868	genome.wustl.edu	37	3	19992491	19992491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004162.4	+1	validated	p.S34L	1.000	337	0%	355	23.9%	30	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
KAT2B	8850	genome.wustl.edu	37	3	20153107	20153107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003884.4	+1	reviewed	p.V291M	1.000	241	0%	91	22%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PCAF_N
ZNF385D	79750	genome.wustl.edu	37	3	21552505	21552505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024697.2	-1	validated	p.A96V	1.000	499	0%	128	19.5%	0	-	benign(0.062)	deleterious(0.02)	neutral(0.387)	HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2
RPL15	6138	genome.wustl.edu	37	3	23959375	23959375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002948.2	+1	reviewed	p.E9K	1.000	98	0%	77	19.5%	753	6.9%	benign(0.185)	deleterious(0.01)	neutral(0.423)	HMMPfam_Ribosomal_L15e,superfamily_Ribosomal proteins L23 and L15e
RPL15	6138	genome.wustl.edu	37	3	23959935	23959935	+	Nonsense_Mutation	SNP	C	C	A	rs192491916	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002948.2	+1	reviewed	p.Y59*	0.978	483	0%	345	21.2%	685	7.7%	-	-	-	HMMPfam_Ribosomal_L15e,PatternScan_RIBOSOMAL_L15E,superfamily_Ribosomal proteins L23 and L15e
THRB	7068	genome.wustl.edu	37	3	24169179	24169179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000461.4	-1	reviewed	p.V319M	1.000	170	0%	55	21.8%	0	-	benign(0.008)	tolerated(0.11)	neutral(0.272)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
TOP2B	7155	genome.wustl.edu	37	3	25656949	25656949	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001068.2	-1	reviewed	p.E1155D	1.000	81	0%	62	19.4%	67	40.2%	benign(0.002)	tolerated(1)	-	HMMPfam_DNA_topoisoIV,HMMSmart_TOP4c,superfamily_Topo_IIA_cen
NGLY1	55768	genome.wustl.edu	37	3	25770676	25770676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018297.3	-1	reviewed	p.G520D	1.000	478	0%	166	16.3%	37	35.1%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMSmart_SM00613
OXSM	54995	genome.wustl.edu	37	3	25831628	25831628	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_026937.1	+1	reviewed	NULL	0.000	7	0.000	15	0.400	4	75%	-	-	-	-
OXSM	54995	genome.wustl.edu	37	3	25833439	25833439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017897.2	+1	reviewed	p.D310N	1.000	107	0%	87	19.5%	22	4.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ketoacyl-synt_C,superfamily_Thiolase-like
LRRC3B	116135	genome.wustl.edu	37	3	26751178	26751178	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052953.2	+1	provisional	p.D5	1.000	426	0%	116	26.7%	1	100%	-	-	-	NULL
NEK10	152110	genome.wustl.edu	37	3	27157454	27157454	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000396636	-1	known	p.G1149	1.000	216	0%	95	17.9%	2	0%	-	-	-	NULL
NEK10	152110	genome.wustl.edu	37	3	27173423	27173423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000396636	-1	known	p.S1067F	1.000	373	0%	147	17.7%	0	-	probably_damaging(0.995)	tolerated(0.2)	deleterious(0.507)	NULL
NEK10	152110	genome.wustl.edu	37	3	27297814	27297814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199347.2	-1	validated	p.S688F	1.000	416	0%	174	17.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SLC4A7	9497	genome.wustl.edu	37	3	27450933	27450933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003615.3	-1	validated	p.A610T	1.000	206	0%	92	29.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCO3_cotransp
SLC4A7	9497	genome.wustl.edu	37	3	27473161	27473161	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003615.3	-1	validated	e7-1	1.000	117	0%	46	15.2%	0	-	-	-	-	-
SLC4A7	9497	genome.wustl.edu	37	3	27478949	27478949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003615.3	-1	validated	p.D111Y	1.000	666	0%	245	20%	0	-	possibly_damaging(0.908)	deleterious(0.05)	deleterious(0.707)	superfamily_Phoshotransferase/anion transport protein
RBMS3	27303	genome.wustl.edu	37	3	29476239	29476239	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003793.2	+1	reviewed	p.S27	1.000	330	0%	116	19%	0	-	-	-	-	superfamily_RNA-binding domain RBD
TGFBR2	7048	genome.wustl.edu	37	3	30713602	30713602	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001024847.2	+1	reviewed	p.T334	0.009	123	0%	59	20.3%	25	24%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZNF860	344787	genome.wustl.edu	37	3	32030839	32030839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001137674.1	+1	provisional	p.E90K	0.781	399	0%	269	20.4%	0	-	benign(0.114)	tolerated(0.43)	neutral(0.022)	NULL
CCR4	1233	genome.wustl.edu	37	3	32995018	32995018	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005508.4	+1	reviewed	p.K35T	0.575	570	0%	192	20.3%	0	-	benign(0.302)	deleterious(0.02)	deleterious(0.477)	superfamily_Family A G protein-coupled receptor-like
GLB1	2720	genome.wustl.edu	37	3	33038809	33038809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000404.2	-1	reviewed	p.L588I	1.000	57	0%	24	29.2%	115	42.6%	possibly_damaging(0.929)	deleterious(0.04)	deleterious(0.725)	NULL
SUSD5	26032	genome.wustl.edu	37	3	33195474	33195474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015551.1	-1	validated	p.S217Y	0.996	103	0%	57	24.6%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
FBXL2	25827	genome.wustl.edu	37	3	33414830	33414830	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012157.3	+1	reviewed	p.S146	1.000	356	0%	130	20%	5	60%	-	-	-	superfamily_SSF52047
FBXL2	25827	genome.wustl.edu	37	3	33420200	33420200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012157.3	+1	reviewed	p.Q306H	1.000	432	0.2%	165	23.6%	9	33.3%	benign(0.003)	tolerated(0.87)	neutral(0.001)	superfamily_SSF52047
UBP1	7342	genome.wustl.edu	37	3	33451062	33451062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128161.1	-1	validated	p.R196Q	1.000	287	0%	90	27.8%	22	45.4%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_CP2
UBP1	7342	genome.wustl.edu	37	3	33453093	33453093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128161.1	-1	validated	p.R179C	1.000	378	0%	138	19.6%	28	46.4%	benign(0.02)	tolerated(0.16)	neutral(0.060)	HMMPfam_CP2
CLASP2	23122	genome.wustl.edu	37	3	33557525	33557525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015097.1	-1	validated	p.P1367H	1.000	485	0.4%	201	21.9%	11	9%	benign(0.024)	deleterious(0)	neutral(0.446)	superfamily_ARM repeat
CLASP2	23122	genome.wustl.edu	37	3	33586203	33586203	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000480385	-1	known	p.W158*	1.000	338	0%	191	10.5%	8	12.5%	possibly_damaging(0.49)	tolerated(0.06)	deleterious(0.486)	NULL
CLASP2	23122	genome.wustl.edu	37	3	33602406	33602406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015097.1	-1	validated	p.L942I	1.000	506	0.2%	319	19.7%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
CLASP2	23122	genome.wustl.edu	37	3	33614671	33614671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015097.1	-1	validated	p.S877Y	1.000	425	0%	395	24.3%	4	50%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	superfamily_ARM repeat
CLASP2	23122	genome.wustl.edu	37	3	33648900	33648900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015097.1	-1	validated	p.A501D	1.000	267	0%	128	22.7%	1	0%	benign(0.406)	tolerated(0.09)	neutral(0.427)	superfamily_ARM repeat
CLASP2	23122	genome.wustl.edu	37	3	33650119	33650119	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015097.1	-1	validated	e14-1	1.000	193	0%	71	22.5%	0	-	-	-	-	-
ARPP21	10777	genome.wustl.edu	37	3	35763197	35763197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016300.4	+1	validated	p.D366Y	1.000	61	0%	31	35.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36874840	36874840	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014831.2	-1	provisional	p.E1484	0.005	36	0%	30	23.3%	5	0%	-	-	-	NULL
MLH1	4292	genome.wustl.edu	37	3	37090094	37090094	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000249.3	+1	reviewed	p.A661	1.000	291	0%	77	18.2%	68	39.7%	-	-	-	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37323500	37323500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002078.4	+1	reviewed	p.V72M	0.000	164	0%	241	19.9%	1	0%	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37323542	37323542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002078.4	+1	reviewed	p.R86W	1.000	221	0.5%	279	26.5%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37368527	37368527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002078.4	+1	reviewed	p.A1717V	0.000	123	0%	40	22.5%	17	29.4%	benign(0.001)	tolerated(0.33)	neutral(0.024)	NULL
ITGA9	3680	genome.wustl.edu	37	3	37544778	37544778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002207.2	+1	reviewed	p.N241S	0.997	483	0%	181	11.6%	0	-	benign(0)	tolerated(0.54)	neutral(0.007)	superfamily_SSF69318
ITGA9	3680	genome.wustl.edu	37	3	37791984	37791984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002207.2	+1	reviewed	p.G822E	0.899	325	0%	246	22.8%	1	0%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
CTDSPL	10217	genome.wustl.edu	37	3	37988590	37988590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008392.1	+1	validated	p.S41I	1.000	72	0%	61	11.5%	6	0%	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	NULL
DLEC1	9940	genome.wustl.edu	37	3	38138686	38138686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007337.2	+1	reviewed	p.S785N	1.000	141	0%	90	23.3%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
DLEC1	9940	genome.wustl.edu	37	3	38139319	38139319	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007337.2	+1	reviewed	p.R884	0.008	83	0%	42	26.2%	1	100%	-	-	-	NULL
DLEC1	9940	genome.wustl.edu	37	3	38156533	38156533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007337.2	+1	reviewed	p.S1282Y	1.000	122	0.8%	121	20.7%	0	-	benign(0.114)	deleterious(0.02)	neutral(0.392)	NULL
DLEC1	9940	genome.wustl.edu	37	3	38163144	38163144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007337.2	+1	reviewed	p.A1631V	0.694	86	0%	48	20.8%	3	33.3%	benign(0.014)	tolerated(0.68)	neutral(0.003)	NULL
ACAA1	30	genome.wustl.edu	37	3	38164585	38164585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001607.3	-1	reviewed	p.G410R	0.997	97	1%	83	14.5%	68	17.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Thiolase_C,PatternScan_THIOLASE_3,superfamily_Thiolase-like
OXSR1	9943	genome.wustl.edu	37	3	38271862	38271862	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005109.2	+1	reviewed	p.E298*	1.000	105	1%	51	21.6%	5	0%	-	-	-	superfamily_Kinase_like
OXSR1	9943	genome.wustl.edu	37	3	38278368	38278368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005109.2	+1	reviewed	p.K330N	1.000	427	0%	104	29.8%	7	0%	possibly_damaging(0.697)	deleterious(0)	deleterious(0.695)	NULL
SLC22A14	9389	genome.wustl.edu	37	3	38354513	38354513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004803.3	+1	validated	p.W323L	1.000	152	0%	228	25.4%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A14	9389	genome.wustl.edu	37	3	38355250	38355250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004803.3	+1	validated	p.S399I	0.000	132	0%	157	21.7%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
XYLB	9942	genome.wustl.edu	37	3	38454498	38454498	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005108.3	+1	reviewed	p.P535	0.000	184	1.1%	101	19.8%	1	0%	-	-	-	NULL
EXOG	9941	genome.wustl.edu	37	3	38537967	38537967	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005107.3	+1	reviewed	p.Q37*	0.145	57	0%	60	23.3%	3	66.6%	-	-	-	NULL
EXOG	9941	genome.wustl.edu	37	3	38565745	38565745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005107.3	+1	reviewed	p.K333N	0.973	141	0%	132	22.7%	3	33.3%	possibly_damaging(0.904)	deleterious(0.02)	deleterious(0.742)	NULL
SCN5A	6331	genome.wustl.edu	37	3	38622738	38622738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099404.1	-1	reviewed	p.R971H	1.000	43	0%	61	37.7%	0	-	benign(0.003)	tolerated(0.18)	neutral(0.056)	HMMPfam_Na_trans_assoc
SCN5A	6331	genome.wustl.edu	37	3	38627376	38627376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099404.1	-1	reviewed	p.Y865H	1.000	287	0%	217	10.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN5A	6331	genome.wustl.edu	37	3	38674544	38674544	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099404.1	-1	reviewed	p.P85	0.997	99	0%	72	19.4%	0	-	-	-	-	NULL
SCN10A	6336	genome.wustl.edu	37	3	38738860	38738860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006514.2	-1	validated	p.L1951M	0.001	249	0%	69	33.3%	0	-	benign(0.01)	tolerated(0.11)	neutral(0.272)	NULL
SCN10A	6336	genome.wustl.edu	37	3	38755545	38755545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006514.2	-1	validated	p.K1236N	0.649	206	0%	89	21.3%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN10A	6336	genome.wustl.edu	37	3	38798274	38798274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006514.2	-1	validated	p.A394D	1.000	374	0%	145	32.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN10A	6336	genome.wustl.edu	37	3	38830528	38830528	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006514.2	-1	validated	e3-1	0.999	353	0%	98	23.5%	0	-	-	-	-	-
SCN11A	11280	genome.wustl.edu	37	3	38888478	38888478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014139.2	-1	validated	p.G1695S	1.000	351	0%	95	43.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SCN11A	11280	genome.wustl.edu	37	3	38946722	38946722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014139.2	-1	validated	p.A522S	0.996	378	0%	135	17%	1	0%	benign(0.127)	tolerated(0.22)	neutral(0.053)	NULL
TTC21A	199223	genome.wustl.edu	37	3	39170391	39170391	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105513.2	+1	validated	p.L630	1.000	93	0%	72	15.3%	2	0%	-	-	-	superfamily_TPR-like
TTC21A	199223	genome.wustl.edu	37	3	39172228	39172228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105513.2	+1	validated	p.G794R	0.863	248	0%	140	14.3%	0	-	probably_damaging(0.995)	tolerated(0.46)	deleterious(0.470)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
CSRNP1	64651	genome.wustl.edu	37	3	39185730	39185730	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033027.3	-1	reviewed	p.E226	1.000	60	0%	66	10.6%	17	41.1%	-	-	-	NULL
XIRP1	165904	genome.wustl.edu	37	3	39227818	39227818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194293.2	-1	provisional	p.T1040M	0.000	56	0%	66	25.8%	0	-	benign(0.036)	tolerated(0.23)	neutral(0.044)	NULL
CCR8	1237	genome.wustl.edu	37	3	39374407	39374407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005201.3	+1	reviewed	p.K195N	0.428	366	0%	50	22%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF619	285267	genome.wustl.edu	37	3	40529299	40529299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145082.2	+1	validated	p.C473Y	1.000	295	0%	195	21.5%	1	100%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF620	253639	genome.wustl.edu	37	3	40558067	40558067	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175888.2	+1	validated	p.R328*	0.841	254	0%	171	22.8%	3	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF620	253639	genome.wustl.edu	37	3	40558110	40558110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175888.2	+1	validated	p.G342V	0.997	262	0%	187	23.5%	4	25%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF620	253639	genome.wustl.edu	37	3	40558252	40558252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175888.2	+1	validated	p.E389D	1.000	288	0%	198	20.7%	3	66.6%	possibly_damaging(0.745)	deleterious(0.03)	deleterious(0.638)	superfamily_C2H2 and C2HC zinc fingers
ZNF621	285268	genome.wustl.edu	37	3	40574507	40574507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098414.1	+1	validated	p.R416C	0.000	388	0%	275	22.5%	7	85.7%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266924	41266924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098209.1	+1	reviewed	p.V199I	1.000	270	0%	88	17%	152	44.7%	benign(0.001)	tolerated(0.41)	neutral(0.015)	HMMSmart_SM00185,superfamily_ARM repeat
CTNNB1	1499	genome.wustl.edu	37	3	41267193	41267193	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098209.1	+1	reviewed	p.L259	0.886	200	0%	85	24.7%	141	44.6%	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
VIPR1	7433	genome.wustl.edu	37	3	42569501	42569501	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004624.3	+1	validated	p.R174	1.000	165	0%	168	20.8%	1	100%	-	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
SEC22C	9117	genome.wustl.edu	37	3	42605155	42605155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032970.2	-1	reviewed	p.A69V	1.000	117	0%	47	19.1%	31	32.2%	unknown(0)	-	-	superfamily_SNARE-like
NKTR	4820	genome.wustl.edu	37	3	42679071	42679071	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005385.3	+1	reviewed	p.P625	0.989	138	0%	65	27.7%	5	60%	-	-	-	NULL
ZBTB47	92999	genome.wustl.edu	37	3	42705300	42705300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145166.3	+1	validated	p.E207D	1.000	230	0%	216	22.7%	9	22.2%	possibly_damaging(0.741)	deleterious(0)	deleterious(0.716)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
KBTBD5	131377	genome.wustl.edu	37	3	42727964	42727964	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152393.2	+1	validated	p.K285T	0.329	137	0%	143	18.2%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
LOC100287203	100287203	genome.wustl.edu	37	3	42730228	42730228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342329.1	-1	model	p.T123A	0.000	106	0%	128	20.3%	0	-	-	-	-	NULL
HHATL	57467	genome.wustl.edu	37	3	42741285	42741285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020707.3	-1	validated	p.V47M	0.988	45	2.2%	41	36.6%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
CCDC13	152206	genome.wustl.edu	37	3	42775102	42775102	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144719.3	-1	validated	e10-1	0.992	92	0%	53	18.9%	0	-	-	-	-	-
CCDC13	152206	genome.wustl.edu	37	3	42799748	42799748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144719.3	-1	validated	p.M30I	1.000	725	0.3%	483	21.9%	1	100%	possibly_damaging(0.891)	deleterious(0)	deleterious(0.795)	NULL
CYP8B1	1582	genome.wustl.edu	37	3	42916587	42916587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004391.2	-1	reviewed	p.S241Y	0.972	12	0%	20	30%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	superfamily_Cytochrome P450
CYP8B1	1582	genome.wustl.edu	37	3	42916813	42916813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004391.2	-1	reviewed	p.E166K	0.990	87	0%	65	30.8%	0	-	possibly_damaging(0.919)	tolerated(0.19)	neutral(0.419)	superfamily_Cytochrome P450
ZNF662	389114	genome.wustl.edu	37	3	42950329	42950329	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134656.1	+1	validated	p.R87*	0.917	266	0%	342	12.6%	0	-	-	-	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF662	389114	genome.wustl.edu	37	3	42956072	42956072	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134656.1	+1	validated	p.S195R	0.760	296	0%	248	10.5%	0	-	benign(0.303)	tolerated(0.53)	neutral(0.102)	NULL
ZNF662	389114	genome.wustl.edu	37	3	42956792	42956792	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134656.1	+1	validated	p.R435	0.320	121	0%	114	27.2%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000240747	0	genome.wustl.edu	37	3	42982844	42982844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000383748	+1	known	p.V55L	0.959	120	0%	59	20.3%	1	0%	possibly_damaging(0.916)	deleterious(0)	deleterious(0.811)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
SNRK	54861	genome.wustl.edu	37	3	43389740	43389740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001100594.1	+1	validated	p.K663N	0.288	96	0%	91	22%	4	50%	benign(0.026)	deleterious(0)	neutral(0.446)	NULL
ANO10	55129	genome.wustl.edu	37	3	43591297	43591297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018075.3	-1	validated	p.C571Y	1.000	314	0%	144	22.2%	30	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF590
C3orf77	375337	genome.wustl.edu	37	3	44286130	44286130	+	Missense_Mutation	SNP	C	C	A	rs192970448	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145030.1	+1	validated	p.A711D	0.436	115	0%	139	12.9%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_PAZ
ZNF445	353274	genome.wustl.edu	37	3	44488954	44488954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181489.5	-1	validated	p.P737S	0.000	244	0%	138	23.9%	2	100%	probably_damaging(1)	tolerated(0.88)	deleterious(0.500)	superfamily_SSF57667
ZNF445	353274	genome.wustl.edu	37	3	44489142	44489142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181489.5	-1	validated	p.A674D	0.000	182	0%	88	15.9%	4	0%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
ZNF445	353274	genome.wustl.edu	37	3	44496683	44496683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181489.5	-1	validated	p.P120H	0.647	159	0%	93	32.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SCAN,HMMSmart_SCAN
ZNF197	10168	genome.wustl.edu	37	3	44670818	44670818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006991.3	+1	reviewed	p.E58K	1.000	109	0.9%	121	30.6%	1	0%	possibly_damaging(0.866)	deleterious(0.02)	deleterious(0.719)	HMMPfam_SCAN,HMMSmart_SM00431
ZNF197	10168	genome.wustl.edu	37	3	44673681	44673681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006991.3	+1	reviewed	p.Q212R	1.000	448	0%	282	16.3%	6	16.6%	benign(0.34)	tolerated(0.89)	neutral(0.107)	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF197	10168	genome.wustl.edu	37	3	44684352	44684352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006991.3	+1	reviewed	p.R577Q	0.881	132	0%	99	22.2%	0	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF197	10168	genome.wustl.edu	37	3	44685661	44685661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006991.3	+1	reviewed	p.F1013L	0.007	176	0%	145	23.4%	3	33.3%	benign(0.189)	tolerated(1)	neutral(0.018)	NULL
ZNF502	91392	genome.wustl.edu	37	3	44763712	44763712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134440.1	+1	validated	p.C468Y	1.000	348	0%	197	18.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
KIF15	56992	genome.wustl.edu	37	3	44827903	44827903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020242.2	+1	validated	p.S159N	1.000	366	0%	185	22.7%	1	100%	possibly_damaging(0.714)	tolerated(0.42)	neutral(0.272)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF15	56992	genome.wustl.edu	37	3	44852418	44852418	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020242.2	+1	validated	p.G684	0.000	282	0%	180	17.8%	8	62.5%	-	-	-	NULL
TGM4	7047	genome.wustl.edu	37	3	44943341	44943341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003241.3	+1	validated	p.D297N	0.977	241	0%	174	12.1%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_Transglut_core,HMMSmart_TGc,superfamily_SSF54001
TGM4	7047	genome.wustl.edu	37	3	44948451	44948451	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003241.3	+1	validated	p.C362*	1.000	125	0%	99	26.3%	0	-	-	-	-	superfamily_SSF54001
TGM4	7047	genome.wustl.edu	37	3	44951829	44951829	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003241.3	+1	validated	p.D525	0.001	131	0%	79	17.7%	0	-	-	-	-	superfamily_Transglut_C
CLEC3B	7123	genome.wustl.edu	37	3	45077068	45077068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003278.2	+1	validated	p.Q87H	0.052	47	0%	58	19%	5	0%	benign(0.392)	tolerated(0.12)	neutral(0.386)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
CDCP1	64866	genome.wustl.edu	37	3	45127154	45127154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022842.3	-1	reviewed	p.Q829H	0.001	321	0%	118	22.9%	33	60.6%	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
CDCP1	64866	genome.wustl.edu	37	3	45159961	45159961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022842.3	-1	reviewed	p.T79A	0.015	379	0%	120	15.8%	9	33.3%	benign(0.059)	tolerated(0.5)	neutral(0.014)	NULL
SLC6A20	54716	genome.wustl.edu	37	3	45804534	45804534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020208.3	-1	reviewed	p.G445D	0.999	116	0%	69	24.6%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF
CCR9	10803	genome.wustl.edu	37	3	45943297	45943297	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031200.1	+1	reviewed	p.S339	0.997	240	0%	141	14.9%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
FYCO1	79443	genome.wustl.edu	37	3	46000898	46000898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024513.2	-1	validated	p.R1192W	1.000	56	0%	37	27%	16	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger
FYCO1	79443	genome.wustl.edu	37	3	46008045	46008045	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024513.2	-1	validated	p.A927	0.233	43	0%	46	17.4%	4	25%	-	-	-	NULL
FYCO1	79443	genome.wustl.edu	37	3	46009535	46009535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024513.2	-1	validated	p.L431M	0.002	139	0%	139	25.9%	2	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
FYCO1	79443	genome.wustl.edu	37	3	46011226	46011226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024513.2	-1	validated	p.L191M	0.068	71	0%	65	13.8%	9	44.4%	benign(0.001)	tolerated(0.53)	neutral(0.007)	NULL
XCR1	2829	genome.wustl.edu	37	3	46063199	46063199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001024644.1	-1	reviewed	p.A81T	0.998	364	0%	415	19.3%	0	-	benign(0.024)	tolerated(0.4)	neutral(0.017)	HMMPfam_7tm_1,superfamily_SSF81321
CCR5	1234	genome.wustl.edu	37	3	46414972	46414972	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000579.3	+1	reviewed	p.F193	0.013	91	0%	41	22%	7	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LTF	4057	genome.wustl.edu	37	3	46497290	46497290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002343.2	-1	reviewed	p.E165D	0.825	82	0%	79	29.1%	2	50%	benign(0.137)	deleterious(0.01)	neutral(0.417)	HMMPfam_Transferrin,HMMSmart_TR_FER,superfamily_SSF53850
ALS2CL	259173	genome.wustl.edu	37	3	46717115	46717115	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_147129.2	-1	validated	p.E750*	0.875	71	0%	57	14%	6	16.6%	-	-	-	superfamily_VPS9 domain (Pfam 02204)
TMIE	259236	genome.wustl.edu	37	3	46750731	46750731	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_147196.2	+1	reviewed	p.V109	1.000	134	0%	161	24.2%	1	0%	-	-	-	NULL
PRSS45	377047	genome.wustl.edu	37	3	46785497	46785497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199183.2	-1	validated	p.V83F	0.008	171	0%	153	23.5%	0	-	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
NBEAL2	23218	genome.wustl.edu	37	3	47040917	47040917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015175.1	+1	validated	p.V1219A	0.000	67	1.5%	76	23.7%	11	27.2%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
SETD2	29072	genome.wustl.edu	37	3	47058711	47058711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014159.6	-1	reviewed	p.Y2523H	1.000	634	0%	430	14.2%	55	9%	benign(0.051)	tolerated(0.19)	neutral(0.053)	HMMPfam_SRI_2
SETD2	29072	genome.wustl.edu	37	3	47161746	47161746	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014159.6	-1	reviewed	p.W1460*	1.000	339	0%	143	21%	4	0%	-	-	-	NULL
SETD2	29072	genome.wustl.edu	37	3	47161835	47161835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014159.6	-1	reviewed	p.V1431I	0.003	548	0%	291	23.4%	3	0%	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
KIF9	64147	genome.wustl.edu	37	3	47282434	47282434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134878.1	-1	validated	p.R594Q	1.000	330	0%	216	22.7%	1	0%	probably_damaging(0.969)	tolerated(0.43)	neutral(0.425)	NULL
SCAP	22937	genome.wustl.edu	37	3	47455570	47455570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012235.2	-1	reviewed	p.S1205I	1.000	166	0%	174	24.1%	204	45%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMSmart_SM00320,superfamily_WD40 repeat-like
SCAP	22937	genome.wustl.edu	37	3	47464015	47464015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012235.2	-1	reviewed	p.E388K	1.000	102	0%	104	23.1%	49	30.6%	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	superfamily_Multidrug efflux transporter AcrB transmembrane domain
C3orf75	54859	genome.wustl.edu	37	3	47552637	47552637	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031703.2	-1	validated	e2+1	1.000	355	0%	281	20.3%	0	-	-	-	-	-
DHX30	22907	genome.wustl.edu	37	3	47887679	47887679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138615.2	+1	reviewed	p.A373T	0.994	47	0%	42	31%	41	34.1%	benign(0.008)	tolerated(0.35)	neutral(0.021)	NULL
MAP4	4134	genome.wustl.edu	37	3	47951098	47951098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030884.3	-1	reviewed	p.H212Y	0.000	256	0%	143	18.9%	0	-	possibly_damaging(0.448)	deleterious(0.01)	deleterious(0.552)	NULL
PLXNB1	5364	genome.wustl.edu	37	3	48450803	48450803	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130082.1	-1	validated	p.A2007	0.021	110	0%	99	21.2%	70	24.2%	-	-	-	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNB1	5364	genome.wustl.edu	37	3	48450873	48450873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130082.1	-1	validated	p.R1984K	1.000	112	0%	99	16.2%	54	64.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNB1	5364	genome.wustl.edu	37	3	48456749	48456749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130082.1	-1	validated	p.R1268C	0.998	64	0%	69	14.5%	30	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
PLXNB1	5364	genome.wustl.edu	37	3	48463083	48463083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130082.1	-1	validated	p.E551D	1.000	73	0%	120	20%	10	30%	benign(0.122)	tolerated(0.06)	neutral(0.333)	NULL
ATRIP	84126	genome.wustl.edu	37	3	48501728	48501728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130384.1	+1	reviewed	p.F425L	0.898	125	0%	71	28.2%	14	42.8%	possibly_damaging(0.808)	tolerated(0.29)	neutral(0.333)	NULL
PFKFB4	5210	genome.wustl.edu	37	3	48563004	48563004	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004567.2	-1	provisional	p.K362N	0.999	70	0%	55	10.9%	4	0%	benign(0.085)	tolerated(0.12)	neutral(0.267)	HMMPfam_PGAM,superfamily_SSF53254
COL7A1	1294	genome.wustl.edu	37	3	48611138	48611138	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000094.3	-1	reviewed	p.G2186	0.989	85	0%	87	17.2%	5	0%	-	-	-	HMMPfam_Collagen
COL7A1	1294	genome.wustl.edu	37	3	48618768	48618768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000094.3	-1	reviewed	p.D1608E	0.400	78	0%	44	25%	3	0%	possibly_damaging(0.825)	tolerated(1)	neutral(0.312)	HMMPfam_Collagen
COL7A1	1294	genome.wustl.edu	37	3	48629243	48629243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000094.3	-1	reviewed	p.P457Q	0.702	95	0%	80	13.8%	1	0%	unknown(0)	tolerated(0.09)	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CELSR3	1951	genome.wustl.edu	37	3	48689953	48689953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001407.2	-1	reviewed	p.L1890M	1.000	83	0%	102	23.5%	0	-	possibly_damaging(0.952)	tolerated(0.06)	deleterious(0.718)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CELSR3	1951	genome.wustl.edu	37	3	48696694	48696694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001407.2	-1	reviewed	p.T1125M	1.000	256	0.8%	244	25%	0	-	probably_damaging(0.997)	tolerated(0.11)	deleterious(0.738)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CELSR3	1951	genome.wustl.edu	37	3	48697908	48697908	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001407.2	-1	reviewed	p.E720	0.998	66	0%	83	24.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
NCKIPSD	51517	genome.wustl.edu	37	3	48712149	48712149	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000413374	-1	known	p.C125*	0.989	270	0%	219	25.1%	62	37%	-	-	-	NULL
PRKAR2A	5576	genome.wustl.edu	37	3	48845102	48845102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004157.2	-1	reviewed	p.R93I	1.000	363	0%	297	21.2%	2	50%	possibly_damaging(0.865)	deleterious(0.01)	deleterious(0.741)	superfamily_cNMP_binding
ARIH2	10425	genome.wustl.edu	37	3	48965219	48965219	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006321.2	+1	provisional	p.H76	1.000	204	0%	160	17.5%	25	44%	-	-	-	NULL
P4HTM	54681	genome.wustl.edu	37	3	49042505	49042505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177938.2	+1	reviewed	p.P367S	0.000	76	0%	85	25.9%	7	57.1%	benign(0.133)	tolerated(0.8)	neutral(0.011)	HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc
WDR6	11180	genome.wustl.edu	37	3	49049955	49049955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018031.3	+1	reviewed	p.R360C	0.909	159	0%	117	16.2%	25	32%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_WD40 repeat-like
WDR6	11180	genome.wustl.edu	37	3	49052386	49052386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018031.3	+1	reviewed	p.V1041M	0.000	227	0%	214	23.8%	100	28%	benign(0.032)	tolerated(0.12)	neutral(0.262)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DALRD3	55152	genome.wustl.edu	37	3	49053774	49053774	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009996.1	-1	validated	e9-1	0.997	130	0%	111	11.7%	4	50%	-	-	-	-
QRICH1	54870	genome.wustl.edu	37	3	49095223	49095223	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000479449	-1	known	NULL	1.000	581	0%	352	11.9%	30	23.3%	-	-	-	-
USP19	10869	genome.wustl.edu	37	3	49153577	49153577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006677.1	-1	provisional	p.E357D	0.997	77	0%	85	12.9%	16	68.7%	benign(0)	tolerated(0.43)	neutral(0.013)	superfamily_HSP20-like chaperones,HMMPfam_DUF1872
LAMB2	3913	genome.wustl.edu	37	3	49159693	49159693	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002292.3	-1	reviewed	p.R1562*	0.996	56	0%	66	24.2%	125	4%	-	-	-	NULL
LAMB2	3913	genome.wustl.edu	37	3	49166175	49166175	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002292.3	-1	reviewed	p.Q603	0.003	81	0%	76	23.7%	19	57.8%	-	-	-	NULL
LAMB2	3913	genome.wustl.edu	37	3	49167361	49167361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002292.3	-1	reviewed	p.R439H	1.000	139	0%	99	19.2%	17	0%	probably_damaging(0.996)	tolerated(0.53)	deleterious(0.469)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_SSF57196
LAMB2	3913	genome.wustl.edu	37	3	49168459	49168459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002292.3	-1	reviewed	p.R280H	1.000	199	0.5%	155	26.5%	12	83.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_N,HMMSmart_LamNT
CCDC71	64925	genome.wustl.edu	37	3	49200894	49200894	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022903.3	-1	validated	p.R250*	0.000	189	0%	284	26.8%	26	23%	-	-	-	NULL
KLHDC8B	200942	genome.wustl.edu	37	3	49212320	49212320	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173546.1	+1	provisional	p.G229	1.000	67	0%	90	23.3%	25	40%	-	-	-	HMMPfam_Kelch_1,superfamily_Gal_oxid_central
LOC646498	646498	genome.wustl.edu	37	3	49215384	49215384	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080528.2	-1	validated	p.L100	0.097	38	0%	66	24.2%	0	-	-	-	-	NULL
LOC646498	646498	genome.wustl.edu	37	3	49215425	49215425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080528.2	-1	validated	p.R87W	0.342	18	0%	32	34.4%	0	-	-	-	-	NULL
CCDC36	339834	genome.wustl.edu	37	3	49292916	49292916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135197.1	+1	validated	p.R209I	0.000	426	0%	179	20.1%	0	-	possibly_damaging(0.861)	tolerated(0.13)	deleterious(0.586)	NULL
USP4	7375	genome.wustl.edu	37	3	49354742	49354742	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000415188	-1	known	p.E289*	1.000	20	0%	14	28.6%	0	-	-	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49662521	49662521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003458.3	+1	reviewed	p.R113M	0.996	91	0%	41	17.1%	0	-	possibly_damaging(0.612)	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49680455	49680455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003458.3	+1	reviewed	p.A463V	0.869	38	0%	28	17.9%	0	-	benign(0.025)	-	-	HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF
BSN	8927	genome.wustl.edu	37	3	49691615	49691615	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003458.3	+1	reviewed	p.T1542	0.003	131	0%	121	22.3%	0	-	-	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49694790	49694790	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003458.3	+1	reviewed	p.R2601*	0.984	42	0%	38	34.2%	0	-	-	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49698268	49698268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003458.3	+1	reviewed	p.R2997H	1.000	22	0%	29	20.7%	0	-	unknown(0)	-	-	NULL
APEH	327	genome.wustl.edu	37	3	49714448	49714448	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001640.3	+1	reviewed	p.Q330	0.998	168	0%	143	23.8%	146	46.5%	-	-	-	superfamily_Peptidase_S9A_N
MST1	4485	genome.wustl.edu	37	3	49721809	49721809	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020998.3	-1	reviewed	p.G652*	1.000	111	0%	85	18.8%	27	40.7%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
RNF123	63891	genome.wustl.edu	37	3	49742510	49742510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022064.2	+1	reviewed	p.L685I	1.000	41	0%	32	37.5%	5	0%	probably_damaging(0.971)	tolerated(0.37)	neutral(0.432)	NULL
AMIGO3	386724	genome.wustl.edu	37	3	49756356	49756356	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198722.2	-1	validated	p.S181	0.722	32	0%	33	24.2%	8	25%	-	-	-	superfamily_SSF52058
RNF123	63891	genome.wustl.edu	37	3	49758004	49758004	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022064.2	+1	reviewed	p.C1187*	1.000	38	0%	64	31.2%	61	14.7%	-	-	-	NULL
CDHR4	389118	genome.wustl.edu	37	3	49828881	49828881	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000487666	-1	known	p.G131*	0.998	127	0%	135	24.4%	0	-	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	NULL
CDHR4	389118	genome.wustl.edu	37	3	49832787	49832787	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007540.2	-1	provisional	p.T291	0.000	66	0%	79	21.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDHR4	389118	genome.wustl.edu	37	3	49836713	49836713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007540.2	-1	provisional	p.S69R	0.050	566	0%	476	20.6%	0	-	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	NULL
MST1R	4486	genome.wustl.edu	37	3	49940483	49940483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002447.2	-1	validated	p.T187N	0.212	19	0%	25	20%	14	35.7%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
MON1A	84315	genome.wustl.edu	37	3	49947637	49947637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032355.3	-1	validated	p.T529A	1.000	61	0%	46	32.6%	26	57.6%	benign(0.075)	tolerated(0.81)	neutral(0.005)	HMMPfam_Mon1
RBM6	10180	genome.wustl.edu	37	3	50005863	50005863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005777.2	+1	validated	p.E335D	1.000	109	0%	80	13.8%	12	25%	benign(0.414)	tolerated(0.61)	neutral(0.138)	NULL
RBM6	10180	genome.wustl.edu	37	3	50095878	50095878	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005777.2	+1	validated	p.V671	1.000	264	0%	103	22.3%	45	31.1%	-	-	-	superfamily_SSF54928
GNAT1	2779	genome.wustl.edu	37	3	50230829	50230829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000172.3	+1	reviewed	p.S94Y	0.998	69	0%	83	16.9%	0	-	benign(0.109)	deleterious(0)	neutral(0.453)	HMMPfam_G-alpha,superfamily_Transducn_insert,superfamily_SSF52540
SLC38A3	10991	genome.wustl.edu	37	3	50252887	50252887	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006841.4	+1	validated	p.V123	0.994	201	0%	192	19.3%	0	-	-	-	-	HMMPfam_Aa_trans
IFRD2	7866	genome.wustl.edu	37	3	50328001	50328001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006764.4	-1	validated	p.E120D	0.994	222	0%	266	16.9%	51	21.5%	unknown(0)	deleterious(0)	-	HMMPfam_IFRD
RASSF1	11186	genome.wustl.edu	37	3	50368035	50368035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170714.1	-1	reviewed	p.L338M	0.998	129	0%	134	18.7%	41	12.1%	benign(0.03)	tolerated(0.22)	neutral(0.044)	NULL
RASSF1	11186	genome.wustl.edu	37	3	50369104	50369104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170714.1	-1	reviewed	p.V220M	0.993	56	0%	72	15.3%	48	25%	possibly_damaging(0.604)	-	-	HMMPfam_RA,HMMSmart_SM00314
CACNA2D2	9254	genome.wustl.edu	37	3	50402108	50402108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005505.1	-1	reviewed	p.R1143C	0.020	28	0%	33	30.3%	0	-	unknown(0)	deleterious(0)	-	NULL
CACNA2D2	9254	genome.wustl.edu	37	3	50413440	50413440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005505.1	-1	reviewed	p.T576N	1.000	165	0%	190	25.8%	0	-	probably_damaging(0.965)	tolerated(0.09)	deleterious(0.704)	NULL
DOCK3	1795	genome.wustl.edu	37	3	50971505	50971505	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004947.3	+1	validated	p.Y104	1.000	564	0.2%	449	20%	1	0%	-	-	-	NULL
VPRBP	9730	genome.wustl.edu	37	3	51457713	51457713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014703.2	-1	validated	p.R851H	1.000	262	0%	115	20%	17	41.1%	probably_damaging(0.987)	tolerated(0.07)	deleterious(0.756)	NULL
VPRBP	9730	genome.wustl.edu	37	3	51457860	51457860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014703.2	-1	validated	p.R802Q	1.000	463	0.2%	166	30.1%	15	53.3%	probably_damaging(0.976)	tolerated(0.14)	deleterious(0.667)	HMMSmart_SM00667,HMMPfam_LisH
VPRBP	9730	genome.wustl.edu	37	3	51464969	51464969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014703.2	-1	validated	p.Q514H	1.000	109	0%	46	32.6%	7	42.8%	possibly_damaging(0.913)	tolerated(0.09)	deleterious(0.661)	superfamily_ARM repeat
VPRBP	9730	genome.wustl.edu	37	3	51475897	51475897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014703.2	-1	validated	p.R177Q	1.000	54	0%	25	24%	3	0%	benign(0.001)	tolerated(0.53)	neutral(0.007)	superfamily_ARM repeat
RAD54L2	23132	genome.wustl.edu	37	3	51671348	51671348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015106.2	+1	validated	p.C504Y	1.000	166	0%	49	12.2%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD54L2	23132	genome.wustl.edu	37	3	51697213	51697213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015106.2	+1	validated	p.P1394L	0.999	401	0.2%	332	25%	3	0%	possibly_damaging(0.887)	deleterious(0.01)	deleterious(0.752)	NULL
TEX264	51368	genome.wustl.edu	37	3	51733496	51733496	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001129884.1	+1	validated	p.A185	0.997	191	0%	193	11.9%	236	23.3%	-	-	-	NULL
GRM2	2912	genome.wustl.edu	37	3	51746633	51746633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000839.3	+1	reviewed	p.L199I	1.000	256	0%	275	22.5%	0	-	probably_damaging(0.966)	tolerated(0.19)	neutral(0.457)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRM2	2912	genome.wustl.edu	37	3	51749765	51749765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000839.3	+1	reviewed	p.R659H	1.000	113	0%	93	20.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_3
GRM2	2912	genome.wustl.edu	37	3	51752122	51752122	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000839.3	+1	reviewed	p.S871	0.923	194	0.5%	199	22.6%	0	-	-	-	-	NULL
IQCF1	132141	genome.wustl.edu	37	3	51937031	51937031	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152397.2	-1	validated	p.H26	0.000	726	0%	359	19.8%	1	100%	-	-	-	NULL
RRP9	9136	genome.wustl.edu	37	3	51969265	51969265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004704.3	-1	provisional	p.D328N	1.000	77	0%	55	20%	80	75%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
RRP9	9136	genome.wustl.edu	37	3	51969628	51969628	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004704.3	-1	provisional	p.E272	1.000	330	0%	295	24.4%	61	1.6%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
RRP9	9136	genome.wustl.edu	37	3	51971581	51971581	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004704.3	-1	provisional	p.Q124*	1.000	282	0%	214	24.8%	52	1.9%	-	-	-	superfamily_WD40 repeat-like
PARP3	10039	genome.wustl.edu	37	3	51978570	51978570	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003931.2	+1	reviewed	p.D166	0.000	180	0%	143	9.8%	32	34.3%	-	-	-	NULL
PARP3	10039	genome.wustl.edu	37	3	51978832	51978832	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003931.2	+1	reviewed	p.V187	0.004	51	0%	69	24.6%	29	55.1%	-	-	-	NULL
ABHD14A	25864	genome.wustl.edu	37	3	52014987	52014987	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015407.4	+1	validated	p.Q257*	0.000	325	0%	296	20.6%	51	27.4%	-	-	-	superfamily_SSF53474
RPL29	6159	genome.wustl.edu	37	3	52028040	52028040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000992.2	-1	reviewed	p.A69T	0.052	107	0%	113	24.8%	1872	41.5%	benign(0.006)	tolerated(0.19)	neutral(0.050)	NULL
ALAS1	211	genome.wustl.edu	37	3	52242102	52242102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000688.4	+1	validated	p.A390V	0.999	214	0.9%	157	28.7%	102	40.1%	possibly_damaging(0.842)	deleterious(0.01)	deleterious(0.728)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
TWF2	11344	genome.wustl.edu	37	3	52263754	52263754	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007284.3	-1	reviewed	p.R269*	1.000	97	0%	125	12.8%	122	0%	-	-	-	HMMPfam_Cofilin_ADF,HMMSmart_ADF,superfamily_SSF55753
WDR82	80335	genome.wustl.edu	37	3	52301021	52301021	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025222.3	-1	validated	p.Y91*	1.000	550	0%	361	28.8%	20	15%	-	-	-	superfamily_WD40 repeat-like
GLYCTK	132158	genome.wustl.edu	37	3	52326740	52326740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145262.3	+1	reviewed	p.E390D	0.416	53	0%	43	25.6%	8	50%	benign(0.137)	tolerated(0.32)	neutral(0.036)	superfamily_GckA/TtuD-like
DNAH1	25981	genome.wustl.edu	37	3	52398658	52398658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015512.4	+1	validated	p.H1750R	1.000	139	0%	132	22.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH1	25981	genome.wustl.edu	37	3	52404527	52404527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015512.4	+1	validated	p.R2098H	0.140	125	0%	203	12.3%	0	-	benign(0.007)	tolerated(0.18)	neutral(0.056)	NULL
DNAH1	25981	genome.wustl.edu	37	3	52404740	52404740	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015512.4	+1	validated	p.L2142	0.000	204	0%	185	25.4%	2	0%	-	-	-	NULL
DNAH1	25981	genome.wustl.edu	37	3	52404784	52404784	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015512.4	+1	validated	p.E2156	1.000	166	0%	182	25.8%	1	0%	-	-	-	NULL
DNAH1	25981	genome.wustl.edu	37	3	52409255	52409255	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015512.4	+1	validated	e44-1	1.000	56	0%	85	15.3%	0	-	-	-	-	-
DNAH1	25981	genome.wustl.edu	37	3	52426627	52426627	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015512.4	+1	validated	p.S3400	1.000	91	0%	73	21.9%	1	100%	-	-	-	NULL
DNAH1	25981	genome.wustl.edu	37	3	52429443	52429443	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015512.4	+1	validated	p.F3696	1.000	137	0%	96	18.8%	4	25%	-	-	-	HMMPfam_Dynein_heavy
DNAH1	25981	genome.wustl.edu	37	3	52432119	52432119	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015512.4	+1	validated	p.A4010	0.073	183	0.5%	180	23.9%	7	57.1%	-	-	-	HMMPfam_Dynein_heavy
BAP1	8314	genome.wustl.edu	37	3	52436618	52436618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004656.2	-1	reviewed	p.G686C	1.000	350	0.3%	338	26.3%	66	31.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BAP1	8314	genome.wustl.edu	37	3	52436834	52436834	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000469613	-1	known	p.R48H	0.862	333	0%	304	19.7%	58	39.6%	-	-	-	NULL
BAP1	8314	genome.wustl.edu	37	3	52438524	52438524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004656.2	-1	reviewed	p.D399N	1.000	224	0.4%	209	20.1%	32	37.5%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
BAP1	8314	genome.wustl.edu	37	3	52442616	52442616	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004656.2	-1	reviewed	p.V43	0.950	124	0%	115	22.6%	23	21.7%	-	-	-	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases
TNNC1	7134	genome.wustl.edu	37	3	52485815	52485815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003280.2	-1	reviewed	p.D88N	1.000	258	0%	265	20.4%	56	48.2%	benign(0.011)	tolerated(0.06)	neutral(0.323)	superfamily_EF-hand
NISCH	11188	genome.wustl.edu	37	3	52521557	52521557	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007184.3	+1	validated	p.A683	0.003	40	0%	54	31.5%	19	21%	-	-	-	NULL
NISCH	11188	genome.wustl.edu	37	3	52526123	52526123	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007184.3	+1	validated	p.I1380	1.000	34	0%	22	36.4%	55	34.5%	-	-	-	NULL
STAB1	23166	genome.wustl.edu	37	3	52542295	52542295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015136.2	+1	reviewed	p.G719S	0.991	218	0%	262	22.1%	5	0%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
STAB1	23166	genome.wustl.edu	37	3	52548195	52548195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015136.2	+1	reviewed	p.R1171H	0.000	76	0%	107	19.6%	5	0%	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
STAB1	23166	genome.wustl.edu	37	3	52551929	52551929	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015136.2	+1	reviewed	p.C1557	1.000	19	0%	37	27%	15	0%	-	-	-	superfamily_FAS1 domain,HMMSmart_SM00181
STAB1	23166	genome.wustl.edu	37	3	52553388	52553388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015136.2	+1	reviewed	p.H1715Y	0.189	102	0%	127	26%	10	0%	possibly_damaging(0.925)	tolerated(0.29)	neutral(0.403)	superfamily_FAS1 domain
STAB1	23166	genome.wustl.edu	37	3	52555008	52555008	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015136.2	+1	reviewed	p.G1965	0.825	31	0%	48	20.8%	22	0%	-	-	-	NULL
NT5DC2	64943	genome.wustl.edu	37	3	52562059	52562059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134231.1	-1	validated	p.L268F	1.000	70	0%	94	19.1%	78	24.3%	benign(0.011)	tolerated(0.73)	neutral(0.002)	HMMPfam_5_nucleotid
NT5DC2	64943	genome.wustl.edu	37	3	52563178	52563178	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000489316	-1	known	p.R67*	0.139	411	0%	469	14.3%	48	25%	-	-	-	NULL
NT5DC2	64943	genome.wustl.edu	37	3	52563250	52563250	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000489316	-1	known	p.R43*	0.127	540	0.2%	593	21.2%	50	46%	-	-	-	NULL
NT5DC2	64943	genome.wustl.edu	37	3	52563283	52563283	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000498608	-1	known	p.A44V	1.000	455	0.2%	498	22.5%	37	35.1%	-	-	-	NULL
PBRM1	55193	genome.wustl.edu	37	3	52610695	52610695	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018165.4	-1	validated	p.R1153*	0.999	435	0%	210	27.6%	3	0%	-	-	-	HMMPfam_BAH,HMMSmart_BAH
GNL3	26354	genome.wustl.edu	37	3	52726986	52726986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014366.4	+1	validated	p.R323Q	1.000	262	0%	254	21.3%	139	51%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MMR_HSR1
ITIH1	3697	genome.wustl.edu	37	3	52818383	52818383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002215.2	+1	reviewed	p.L433M	1.000	150	0%	117	23.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ITIH1	3697	genome.wustl.edu	37	3	52818481	52818481	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002215.2	+1	reviewed	p.T465	0.470	167	0%	121	20.7%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ITIH3	3699	genome.wustl.edu	37	3	52828871	52828871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002217.3	+1	validated	p.A18T	0.624	170	0%	164	12.8%	0	-	benign(0.139)	tolerated(0.15)	neutral(0.253)	NULL
ITIH3	3699	genome.wustl.edu	37	3	52836787	52836787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002217.3	+1	validated	p.W558C	1.000	148	0%	103	25.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRKCD	5580	genome.wustl.edu	37	3	53212455	53212455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006254.3	+1	reviewed	p.R6H	1.000	27	0%	37	16.2%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2_CaLB
PRKCD	5580	genome.wustl.edu	37	3	53220661	53220661	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006254.3	+1	reviewed	p.D434	1.000	138	0%	114	26.3%	59	23.7%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PRKCD	5580	genome.wustl.edu	37	3	53220690	53220690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006254.3	+1	reviewed	p.R444H	1.000	103	0%	85	15.3%	81	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TKT	7086	genome.wustl.edu	37	3	53259944	53259944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001064.2	-1	validated	p.G567D	1.000	80	0%	69	29%	870	44.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like
ENSG00000113811	0	genome.wustl.edu	37	3	53922449	53922449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000488746	-1	known	p.F27L	0.982	483	0%	709	21.2%	79	26.5%	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	NULL
CACNA2D3	55799	genome.wustl.edu	37	3	54354486	54354486	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018398.2	+1	reviewed	p.E74	0.998	280	0%	87	17.2%	0	-	-	-	-	NULL
CACNA2D3	55799	genome.wustl.edu	37	3	54798290	54798290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018398.2	+1	reviewed	p.V431A	1.000	195	0%	54	25.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
CACNA2D3	55799	genome.wustl.edu	37	3	55018673	55018673	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018398.2	+1	reviewed	p.I865	0.998	364	0%	127	15.7%	0	-	-	-	-	NULL
WNT5A	7474	genome.wustl.edu	37	3	55514868	55514868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003392.3	-1	reviewed	p.A29S	1.000	210	0%	287	24.4%	7	71.4%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
ERC2	26059	genome.wustl.edu	37	3	56114944	56114944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015576.1	-1	validated	p.Q514H	0.993	659	0%	156	20.5%	0	-	possibly_damaging(0.609)	deleterious(0.05)	deleterious(0.556)	superfamily_Prefoldin,HMMPfam_Cast
FAM208A	23272	genome.wustl.edu	37	3	56661679	56661679	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001112736.1	-1	validated	p.E1321*	1.000	295	0%	116	19.8%	12	25%	-	-	-	NULL
ARHGEF3	50650	genome.wustl.edu	37	3	56763323	56763323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128615.1	-1	reviewed	p.S551N	1.000	326	0%	229	24.9%	42	47.6%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
IL17RD	54756	genome.wustl.edu	37	3	57148844	57148844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017563.3	-1	validated	p.N62K	1.000	185	0%	77	22.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ASB14	142686	genome.wustl.edu	37	3	57312486	57312486	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142733.2	-1	reviewed	p.C286W	0.989	259	0%	72	26.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
DNAH12	201625	genome.wustl.edu	37	3	57407351	57407351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178504.4	-1	validated	p.R1800Q	0.996	279	0%	177	24.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
DNAH12	201625	genome.wustl.edu	37	3	57445347	57445347	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178504.4	-1	validated	p.I945N	1.000	290	0%	176	13.6%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_DHC_N2
PDE12	201626	genome.wustl.edu	37	3	57542566	57542566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177966.5	+1	validated	p.K154E	1.000	38	0%	38	21.1%	7	57.1%	benign(0.008)	tolerated(0.83)	neutral(0.001)	NULL
SLMAP	7871	genome.wustl.edu	37	3	57857370	57857370	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007159.2	+1	validated	p.L381	1.000	427	0%	203	29.1%	5	40%	-	-	-	NULL
SLMAP	7871	genome.wustl.edu	37	3	57882279	57882279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007159.2	+1	validated	p.L434M	1.000	242	0.4%	101	10.9%	25	0%	probably_damaging(0.982)	deleterious(0.04)	deleterious(0.775)	NULL
FLNB	2317	genome.wustl.edu	37	3	58090816	58090816	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001457.3	+1	reviewed	p.E540D	1.000	316	0%	134	22.4%	1	0%	possibly_damaging(0.599)	deleterious(0.04)	deleterious(0.556)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
FLNB	2317	genome.wustl.edu	37	3	58090931	58090931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001457.3	+1	reviewed	p.V579M	1.000	325	0%	141	29.1%	2	0%	possibly_damaging(0.912)	deleterious(0.03)	deleterious(0.728)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
FLNB	2317	genome.wustl.edu	37	3	58109014	58109014	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001457.3	+1	reviewed	p.Y1107*	1.000	144	0%	110	24.5%	7	0%	-	-	-	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
FLNB	2317	genome.wustl.edu	37	3	58109227	58109227	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001457.3	+1	reviewed	p.A1178	0.002	28	0%	36	25%	5	20%	-	-	-	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
FLNB	2317	genome.wustl.edu	37	3	58132548	58132548	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001457.3	+1	reviewed	p.G1852	0.978	144	0%	122	27.9%	10	90%	-	-	-	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
FLNB	2317	genome.wustl.edu	37	3	58140635	58140635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001457.3	+1	reviewed	p.S2251Y	1.000	260	0%	145	21.4%	16	0%	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
ABHD6	57406	genome.wustl.edu	37	3	58260422	58260422	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020676.5	+1	validated	p.R187	0.940	105	0%	68	11.8%	2	100%	-	-	-	HMMPfam_Abhydrolase_1,superfamily_SSF53474
PXK	54899	genome.wustl.edu	37	3	58383350	58383350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017771.3	+1	provisional	p.V335I	1.000	140	0%	81	17.3%	19	52.6%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_Protein kinase-like (PK-like)
PDHB	5162	genome.wustl.edu	37	3	58413801	58413801	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000925.3	-1	reviewed	p.K347T	1.000	274	0%	274	18.2%	203	35.9%	benign(0.021)	tolerated(0.21)	neutral(0.045)	HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like
ACOX2	8309	genome.wustl.edu	37	3	58519214	58519214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003500.3	-1	reviewed	p.H181Y	0.986	425	0%	319	22.3%	0	-	possibly_damaging(0.801)	deleterious(0)	deleterious(0.746)	HMMPfam_Acyl-CoA_dh_M,superfamily_AcylCoA_dehyd_NM
C3orf67	200844	genome.wustl.edu	37	3	58852360	58852360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198463.2	-1	validated	p.T272I	0.000	404	0%	382	18.8%	0	-	benign(0.261)	deleterious(0.02)	neutral(0.410)	NULL
FHIT	2272	genome.wustl.edu	37	3	59999787	59999787	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002012.2	-1	reviewed	p.V65	0.000	156	0%	71	21.1%	20	40%	-	-	-	HMMPfam_HIT,superfamily_HIT-like
PTPRG	5793	genome.wustl.edu	37	3	62177317	62177317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002841.3	+1	reviewed	p.D403G	1.000	259	0%	148	31.1%	6	33.3%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRG	5793	genome.wustl.edu	37	3	62268469	62268469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002841.3	+1	reviewed	p.S1327N	1.000	361	0%	79	21.5%	15	40%	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
CADPS	8618	genome.wustl.edu	37	3	62385182	62385182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003716.3	-1	reviewed	p.R1321C	1.000	297	0.3%	121	14%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CADPS	8618	genome.wustl.edu	37	3	62631473	62631473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003716.3	-1	reviewed	p.R417C	1.000	487	0%	111	27.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_C2
ATXN7	6314	genome.wustl.edu	37	3	63975998	63975998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128149.2	+1	reviewed	p.S503Y	1.000	230	0%	197	20.3%	1	0%	possibly_damaging(0.906)	tolerated(0.34)	neutral(0.383)	NULL
ADAMTS9	56999	genome.wustl.edu	37	3	64589764	64589764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182920.1	-1	reviewed	p.C1194Y	1.000	285	0%	91	15.4%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
TMF1	7110	genome.wustl.edu	37	3	69096604	69096604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007114.2	-1	validated	p.N418D	0.032	244	0%	202	11.4%	6	33.3%	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
UBA3	9039	genome.wustl.edu	37	3	69112215	69112215	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003968.3	-1	reviewed	p.E204A	1.000	208	0%	167	25.1%	38	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ThiF,superfamily_Activating enzymes of the ubiquitin-like proteins
LMOD3	56203	genome.wustl.edu	37	3	69168712	69168712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198271.3	-1	validated	p.N265S	1.000	496	0%	147	15.6%	0	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_Tropomodulin,superfamily_RNI-like
FRMD4B	23150	genome.wustl.edu	37	3	69221074	69221074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015123.1	-1	validated	p.L1015M	0.057	738	0.1%	246	26.4%	19	47.3%	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
FRMD4B	23150	genome.wustl.edu	37	3	69242999	69242999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015123.1	-1	validated	p.S505I	1.000	524	0%	449	12%	4	0%	possibly_damaging(0.926)	deleterious(0.02)	deleterious(0.758)	NULL
FOXP1	27086	genome.wustl.edu	37	3	71026848	71026848	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032682.4	-1	reviewed	p.F458L	1.000	590	0%	440	15.9%	17	29.4%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
GXYLT2	727936	genome.wustl.edu	37	3	73016845	73016845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080393.1	+1	provisional	p.R375I	0.763	293	0%	126	21.4%	1	0%	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	superfamily_SSF53448
GXYLT2	727936	genome.wustl.edu	37	3	73024212	73024212	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080393.1	+1	provisional	p.R412*	1.000	397	0%	208	25.5%	2	0%	-	-	-	NULL
PDZRN3	23024	genome.wustl.edu	37	3	73432936	73432936	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000416926	-1	known	p.R647*	1.000	33	0%	33	24.2%	4	0%	-	-	-	NULL
CNTN3	5067	genome.wustl.edu	37	3	74334530	74334530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020872.1	-1	validated	p.T877M	0.945	161	0%	49	22.4%	0	-	probably_damaging(0.968)	deleterious(0.02)	deleterious(0.793)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CNTN3	5067	genome.wustl.edu	37	3	74411082	74411082	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020872.1	-1	validated	p.S441	0.000	194	0%	97	15.5%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ROBO2	6092	genome.wustl.edu	37	3	77607110	77607110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002942.3	+1	reviewed	p.P416H	1.000	132	0%	36	13.9%	1	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_Immunoglobulin
ROBO2	6092	genome.wustl.edu	37	3	77651546	77651546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002942.3	+1	reviewed	p.D1014N	1.000	314	0%	312	24%	1	100%	possibly_damaging(0.894)	deleterious(0.01)	deleterious(0.758)	NULL
ROBO1	6091	genome.wustl.edu	37	3	78685208	78685208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002941.3	-1	reviewed	p.L1030M	1.000	199	0%	75	20%	4	0%	possibly_damaging(0.598)	deleterious(0.02)	deleterious(0.590)	NULL
ROBO1	6091	genome.wustl.edu	37	3	78717178	78717178	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002941.3	-1	reviewed	p.W607*	1.000	229	0%	112	13.4%	3	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CADM2	253559	genome.wustl.edu	37	3	85851295	85851295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153184.3	+1	validated	p.L56I	1.000	168	0%	46	32.6%	0	-	probably_damaging(0.999)	tolerated(0.69)	deleterious(0.492)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
CHMP2B	25978	genome.wustl.edu	37	3	87302614	87302614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014043.3	+1	reviewed	p.I162T	1.000	335	0%	136	20.6%	38	44.7%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_Snf7
CHMP2B	25978	genome.wustl.edu	37	3	87302638	87302638	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014043.3	+1	reviewed	p.I170S	1.000	281	0%	125	20.8%	45	42.2%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Snf7
HTR1F	3355	genome.wustl.edu	37	3	88040117	88040117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000866.3	+1	validated	p.A73V	1.000	299	0%	134	31.3%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_SSF81321
CRYBG3	131544	genome.wustl.edu	37	3	97596706	97596706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153605.2	+1	validated	p.S275Y	1.000	245	0%	85	21.2%	0	-	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
CRYBG3	131544	genome.wustl.edu	37	3	97611749	97611749	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153605.2	+1	validated	p.F548V	0.997	180	0.6%	39	35.9%	2	0%	possibly_damaging(0.83)	tolerated(0.63)	neutral(0.319)	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
CRYBG3	131544	genome.wustl.edu	37	3	97660077	97660077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153605.2	+1	validated	p.S916Y	0.983	247	0%	61	27.9%	5	40%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
MINA	84864	genome.wustl.edu	37	3	97686297	97686297	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042533.1	-1	validated	p.S47	0.010	224	0%	290	15.2%	3	0%	-	-	-	superfamily_Clavaminate synthase-like
GABRR3	200959	genome.wustl.edu	37	3	97705699	97705699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000329044	-1	known	p.S183L	0.000	323	0%	227	18.5%	0	-	benign(0.01)	tolerated(0.31)	neutral(0.028)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRR3	200959	genome.wustl.edu	37	3	97720517	97720517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000329044	-1	known	p.M55I	1.000	329	0%	99	24.2%	0	-	benign(0.325)	tolerated(0.41)	neutral(0.117)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
OR5H1	26341	genome.wustl.edu	37	3	97851644	97851644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005338.1	+1	provisional	p.Y35H	0.684	456	0%	114	20.2%	0	-	possibly_damaging(0.565)	deleterious(0)	deleterious(0.637)	superfamily_SSF81321
OR5H6	79295	genome.wustl.edu	37	3	97983146	97983146	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005479.1	+1	provisional	p.C6*	0.000	305	0%	93	12.9%	0	-	-	-	-	NULL
OR5K3	403277	genome.wustl.edu	37	3	98109720	98109720	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005516.1	+1	provisional	p.S71A	0.964	594	0%	177	11.9%	0	-	benign(0.325)	tolerated(0.62)	neutral(0.106)	HMMPfam_7tm_1,superfamily_SSF81321
OR5K3	403277	genome.wustl.edu	37	3	98110278	98110278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005516.1	+1	provisional	p.Y257H	0.165	473	0%	207	20.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,superfamily_SSF81321
GPR15	2838	genome.wustl.edu	37	3	98251440	98251440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005290.1	+1	provisional	p.A188V	0.085	324	0%	310	21.6%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ST3GAL6	10402	genome.wustl.edu	37	3	98506993	98506993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006100.2	+1	provisional	p.T182M	0.010	362	0%	125	18.4%	10	30%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Glyco_transf_29
COL8A1	1295	genome.wustl.edu	37	3	99514827	99514827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001850.3	+1	reviewed	p.K694N	1.000	56	0%	55	23.6%	0	-	possibly_damaging(0.869)	deleterious(0)	deleterious(0.782)	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
FILIP1L	11259	genome.wustl.edu	37	3	99569425	99569425	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182909.2	-1	validated	p.N365	0.003	571	0%	225	19.6%	3	0%	-	-	-	superfamily_Prefoldin,HMMPfam_CortBP2
C3orf26	84319	genome.wustl.edu	37	3	99891190	99891190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032359.3	+1	validated	p.R204C	1.000	380	0%	108	16.7%	70	30%	probably_damaging(0.973)	tolerated(0.05)	deleterious(0.760)	superfamily_SSF52540
GPR128	84873	genome.wustl.edu	37	3	100364806	100364806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032787.2	+1	validated	p.G322S	1.000	352	0.3%	160	18.1%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
TFG	10342	genome.wustl.edu	37	3	100432650	100432650	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007565.1	+1	validated	p.Q41*	1.000	189	0%	217	18%	37	16.2%	-	-	-	HMMPfam_PB1,HMMSmart_PB1,superfamily_SSF54277
ABI3BP	25890	genome.wustl.edu	37	3	100593706	100593706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015429.3	-1	validated	p.D304Y	0.950	546	0%	236	18.6%	3	0%	possibly_damaging(0.843)	deleterious(0.01)	deleterious(0.729)	NULL
ABI3BP	25890	genome.wustl.edu	37	3	100595401	100595401	+	Missense_Mutation	SNP	C	C	A	rs75841780	byCluster;by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015429.3	-1	validated	p.A241S	0.729	499	0%	228	21.1%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
IMPG2	50939	genome.wustl.edu	37	3	100949961	100949961	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016247.2	-1	validated	p.R1088*	1.000	278	0%	142	31.7%	0	-	-	-	-	superfamily_EGF/Laminin
IMPG2	50939	genome.wustl.edu	37	3	101038554	101038554	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016247.2	-1	validated	p.E70*	0.204	385	0%	80	32.5%	0	-	-	-	-	NULL
IMPG2	50939	genome.wustl.edu	37	3	101038604	101038604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016247.2	-1	validated	p.S53L	0.001	290	0%	75	20%	0	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
SENP7	57337	genome.wustl.edu	37	3	101085535	101085535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020654.3	-1	validated	p.P353S	0.001	437	0%	170	18.8%	2	0%	benign(0.039)	tolerated(0.16)	neutral(0.061)	NULL
RG9MTD1	54931	genome.wustl.edu	37	3	101284463	101284463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017819.2	+1	provisional	p.D280Y	0.998	214	0%	213	25.4%	39	53.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_tRNA_m1G_MT
ZBTB11	27107	genome.wustl.edu	37	3	101378635	101378635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014415.3	-1	validated	p.A680T	1.000	412	0%	181	21%	5	20%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
NFKBIZ	64332	genome.wustl.edu	37	3	101576173	101576173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031419.2	+1	reviewed	p.S658I	1.000	190	0%	141	22.7%	7	42.8%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ZPLD1	131368	genome.wustl.edu	37	3	102175202	102175202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175056.1	+1	provisional	p.N181D	1.000	308	0%	186	21.5%	0	-	probably_damaging(0.985)	deleterious(0.04)	deleterious(0.781)	HMMPfam_Zona_pellucida,HMMSmart_ZP
ALCAM	214	genome.wustl.edu	37	3	105238967	105238967	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001627.2	+1	validated	p.R44*	0.976	393	0%	478	11.7%	4	25%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,superfamily_Immunoglobulin
CBLB	868	genome.wustl.edu	37	3	105377828	105377828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170662.3	-1	validated	p.R979C	0.970	254	0%	87	11.5%	40	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CD47	961	genome.wustl.edu	37	3	107776416	107776416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001777.3	-1	reviewed	p.A262V	0.978	187	0%	107	18.7%	412	47.5%	benign(0.001)	deleterious(0.05)	neutral(0.345)	HMMPfam_CD47
IFT57	55081	genome.wustl.edu	37	3	107910387	107910387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018010.3	-1	validated	p.T253M	1.000	357	0%	143	26.6%	156	46.7%	benign(0.094)	deleterious(0.02)	neutral(0.390)	HMMPfam_IFT57
IFT57	55081	genome.wustl.edu	37	3	107938277	107938277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018010.3	-1	validated	p.L119I	1.000	278	0%	294	23.8%	97	44.3%	possibly_damaging(0.939)	tolerated(0.18)	neutral(0.441)	HMMPfam_IFT57
MYH15	22989	genome.wustl.edu	37	3	108158702	108158702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014981.1	-1	validated	p.R1006I	1.000	336	0.3%	116	14.7%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_Prefoldin
MYH15	22989	genome.wustl.edu	37	3	108211437	108211437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014981.1	-1	validated	p.L281I	0.961	324	0.3%	142	22.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA1524	57650	genome.wustl.edu	37	3	108298165	108298165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020890.2	-1	validated	p.L261F	1.000	187	0%	137	16.1%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
KIAA1524	57650	genome.wustl.edu	37	3	108300983	108300983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020890.2	-1	validated	p.E142K	1.000	137	0%	201	21.9%	1	0%	unknown(0)	-	-	superfamily_ARM repeat
DZIP3	9666	genome.wustl.edu	37	3	108326951	108326951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014648.3	+1	validated	p.E16D	0.411	372	0.3%	131	18.3%	3	66.6%	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	NULL
DZIP3	9666	genome.wustl.edu	37	3	108363063	108363063	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014648.3	+1	validated	p.H398	1.000	128	0%	54	13%	3	0%	-	-	-	NULL
MORC1	27136	genome.wustl.edu	37	3	108688527	108688527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014429.3	-1	reviewed	p.C865R	0.999	336	0%	126	12.7%	0	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	NULL
MORC1	27136	genome.wustl.edu	37	3	108723664	108723664	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014429.3	-1	reviewed	p.Q695	0.000	185	0%	166	25.9%	0	-	-	-	-	NULL
PVRL3	25945	genome.wustl.edu	37	3	110845070	110845070	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000486596	+1	known	p.Q220*	1.000	206	0%	229	24%	7	42.8%	-	-	-	superfamily_Immunoglobulin
CD96	10225	genome.wustl.edu	37	3	111356968	111356968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198196.2	+1	reviewed	p.P493H	0.014	374	0%	97	22.7%	8	0%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111658363	111658363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134438.1	+1	validated	p.D724E	1.000	276	0%	72	15.3%	1	0%	possibly_damaging(0.772)	tolerated(0.06)	deleterious(0.609)	NULL
ABHD10	55347	genome.wustl.edu	37	3	111710295	111710295	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018394.2	+1	validated	p.N216	0.000	294	0%	169	13%	20	10%	-	-	-	HMMPfam_Abhydrolase_1,superfamily_SSF53474
TMPRSS7	344805	genome.wustl.edu	37	3	111800034	111800034	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_026734.1	+1	validated	NULL	0.001	60	0%	52	32.7%	0	-	-	-	-	-
C3orf52	79669	genome.wustl.edu	37	3	111835675	111835675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000431717	+1	known	p.L195I	0.000	127	0%	45	15.6%	3	0%	unknown(0)	-	-	NULL
CD200	4345	genome.wustl.edu	37	3	112063945	112063945	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004196.2	+1	reviewed	p.T102	0.876	165	0%	85	20%	25	48%	-	-	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
ATG3	64422	genome.wustl.edu	37	3	112267473	112267473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022488.3	-1	provisional	p.R84W	0.995	396	0%	310	16.8%	137	44.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Autophagy_N
CCDC80	151887	genome.wustl.edu	37	3	112356969	112356969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199511.1	-1	validated	p.G595D	0.846	558	0%	476	21.8%	10	0%	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
CD200R1	131450	genome.wustl.edu	37	3	112648105	112648105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138806.3	-1	reviewed	p.G151V	0.484	497	0%	182	22%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Immunoglobulin
CD200R1	131450	genome.wustl.edu	37	3	112648327	112648327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138806.3	-1	reviewed	p.A77V	0.000	217	0%	85	31.8%	1	0%	benign(0.288)	tolerated(0.07)	neutral(0.407)	superfamily_Immunoglobulin
BOC	91653	genome.wustl.edu	37	3	112968673	112968673	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033254.2	+1	validated	p.A8	0.000	162	0%	79	19%	10	40%	-	-	-	NULL
WDR52	55779	genome.wustl.edu	37	3	113092331	113092331	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018338.3	-1	validated	p.Q791*	0.110	324	0%	93	19.4%	0	-	-	-	-	superfamily_WD40_like
WDR52	55779	genome.wustl.edu	37	3	113122860	113122860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018338.3	-1	validated	p.L337I	0.956	287	0%	156	22.4%	0	-	benign(0.144)	tolerated(0.08)	neutral(0.312)	superfamily_WD40_like
SPICE1	152185	genome.wustl.edu	37	3	113184522	113184522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144718.3	-1	validated	p.R422K	0.997	325	0%	264	21.2%	7	71.4%	possibly_damaging(0.942)	tolerated(0.39)	neutral(0.403)	NULL
SPICE1	152185	genome.wustl.edu	37	3	113187024	113187024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144718.3	-1	validated	p.V373M	1.000	185	0%	129	15.5%	10	40%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
SIDT1	54847	genome.wustl.edu	37	3	113323806	113323806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017699.2	+1	validated	p.V463I	1.000	160	0%	93	12.9%	0	-	probably_damaging(0.958)	tolerated(0.17)	neutral(0.461)	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113379008	113379008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009899.2	-1	validated	p.Q507H	1.000	224	0%	72	25%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113383224	113383224	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009899.2	-1	validated	p.K64N	0.947	533	0%	213	23%	1	0%	possibly_damaging(0.722)	deleterious(0.01)	deleterious(0.667)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
ATP6V1A	523	genome.wustl.edu	37	3	113517264	113517264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001690.2	+1	reviewed	p.L489M	1.000	229	0%	74	12.2%	32	21.8%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_ATP-synt_ab_C,superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase
GRAMD1C	54762	genome.wustl.edu	37	3	113563360	113563360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017577.4	+1	validated	p.E13G	0.019	313	0%	477	24.5%	0	-	possibly_damaging(0.586)	deleterious(0.02)	deleterious(0.585)	NULL
ZDHHC23	254887	genome.wustl.edu	37	3	113673126	113673126	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173570.3	+1	validated	p.K247	0.000	152	0%	154	27.9%	3	33.3%	-	-	-	NULL
KIAA1407	57577	genome.wustl.edu	37	3	113761601	113761601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020817.1	-1	predicted	p.V122I	0.000	328	0%	146	21.9%	3	66.6%	benign(0)	tolerated(0.87)	neutral(0.001)	NULL
TIGIT	201633	genome.wustl.edu	37	3	114018495	114018495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173799.3	+1	validated	p.A148V	0.000	127	0.8%	70	20%	19	0%	benign(0.195)	tolerated(0.59)	neutral(0.023)	NULL
ZBTB20	26137	genome.wustl.edu	37	3	114070277	114070277	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015642.4	-1	validated	p.P143	0.130	46	0%	34	20.6%	0	-	-	-	-	NULL
LSAMP	4045	genome.wustl.edu	37	3	116163854	116163854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002338.3	-1	reviewed	p.R9W	0.999	85	0%	68	23.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119102050	119102050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020754.2	+1	reviewed	p.A220V	0.065	266	0%	104	16.3%	0	-	benign(0.036)	deleterious(0)	neutral(0.447)	superfamily_GTPase activation domain GAP
ARHGAP31	57514	genome.wustl.edu	37	3	119133307	119133307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020754.2	+1	reviewed	p.S844I	0.001	81	0%	29	13.8%	3	0%	benign(0.242)	deleterious(0)	deleterious(0.469)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119134618	119134618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020754.2	+1	reviewed	p.C1281Y	0.001	123	0%	49	14.3%	3	0%	benign(0.006)	deleterious(0.02)	neutral(0.383)	NULL
TMEM39A	55254	genome.wustl.edu	37	3	119150946	119150946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018266.1	-1	provisional	p.S450Y	1.000	246	0%	46	30.4%	32	25%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Tmp39
C3orf15	89876	genome.wustl.edu	37	3	119426373	119426373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033364.3	+1	validated	p.K108N	0.001	166	0%	121	20.7%	0	-	possibly_damaging(0.901)	-	-	NULL
NR1I2	8856	genome.wustl.edu	37	3	119531658	119531658	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022002.2	+1	reviewed	p.L254	1.000	157	0%	177	23.2%	0	-	-	-	-	superfamily_Str_ncl_receptor
STXBP5L	9515	genome.wustl.edu	37	3	121137342	121137342	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014980.2	+1	validated	p.L1153	1.000	142	0%	49	14.3%	0	-	-	-	-	NULL
POLQ	10721	genome.wustl.edu	37	3	121195392	121195392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199420.3	-1	validated	p.A2134T	1.000	234	0%	73	9.6%	4	0%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_DNA_pol_A,superfamily_DNA/RNA polymerases
POLQ	10721	genome.wustl.edu	37	3	121208621	121208621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199420.3	-1	validated	p.D1053N	0.000	76	0%	43	18.6%	0	-	benign(0.235)	deleterious(0.04)	neutral(0.372)	NULL
HCLS1	3059	genome.wustl.edu	37	3	121353130	121353130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005335.4	-1	validated	p.P276H	0.008	131	0.8%	75	33.3%	133	3%	benign(0.001)	tolerated(0.36)	neutral(0.020)	NULL
HCLS1	3059	genome.wustl.edu	37	3	121355281	121355281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000412597	-1	known	p.R189K	1.000	256	0%	189	25.4%	130	0.7%	unknown(0)	-	-	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121409831	121409831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004487.3	-1	validated	p.A2789T	0.000	358	0%	427	26.9%	33	45.4%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121412694	121412694	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004487.3	-1	validated	p.S2221R	1.000	570	0%	544	24.3%	16	25%	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121414324	121414324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004487.3	-1	validated	p.K1677N	0.984	1049	0.2%	839	21.5%	6	66.6%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121414685	121414685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004487.3	-1	validated	p.R1557M	0.846	464	0%	366	22.7%	9	44.4%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121415754	121415754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004487.3	-1	validated	p.L1201I	1.000	581	0%	448	21%	9	44.4%	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	superfamily_Prefoldin
GOLGB1	2804	genome.wustl.edu	37	3	121415986	121415986	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000489400	-1	known	p.R994K	0.999	513	0%	415	18.8%	4	25%	-	-	-	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121416964	121416964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004487.3	-1	validated	p.Q797H	1.000	575	0%	350	19.7%	4	50%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
IQCB1	9657	genome.wustl.edu	37	3	121489385	121489385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001023570.2	-1	reviewed	p.P535H	1.000	365	0%	154	26%	47	46.8%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
SLC15A2	6565	genome.wustl.edu	37	3	121643826	121643826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021082.3	+1	validated	p.P357L	1.000	808	0%	378	18.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PTR2,superfamily_MFS_gen_substrate_transporter
CASR	846	genome.wustl.edu	37	3	121980577	121980577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000388.3	+1	reviewed	p.E232G	1.000	211	0%	106	20.8%	0	-	possibly_damaging(0.861)	tolerated(0.28)	neutral(0.365)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
CASR	846	genome.wustl.edu	37	3	122002903	122002903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000388.3	+1	reviewed	p.R701L	0.996	94	0%	83	24.1%	0	-	possibly_damaging(0.853)	tolerated(0.21)	neutral(0.372)	HMMPfam_7tm_3
CASR	846	genome.wustl.edu	37	3	122003737	122003737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000388.3	+1	reviewed	p.F979S	0.999	107	0%	167	21%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
CCDC58	131076	genome.wustl.edu	37	3	122090589	122090589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017928.2	-1	validated	p.T37M	1.000	404	0%	222	22.5%	57	24.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cid2
FAM162A	26355	genome.wustl.edu	37	3	122128697	122128697	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000440333	+1	known	p.A149G	0.109	137	0%	56	33.9%	214	46.7%	benign(0)	tolerated(0.92)	-	NULL
PARP9	83666	genome.wustl.edu	37	3	122274678	122274678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031458.2	-1	validated	p.L149M	1.000	300	0.3%	201	22.4%	40	35%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like
DTX3L	151636	genome.wustl.edu	37	3	122287506	122287506	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138287.3	+1	validated	p.E190	0.000	252	0%	252	19.8%	13	61.5%	-	-	-	NULL
PARP14	54625	genome.wustl.edu	37	3	122418387	122418387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017554.2	+1	validated	p.P329L	0.001	236	0%	132	19.7%	8	25%	benign(0.023)	tolerated(0.51)	neutral(0.010)	NULL
PARP14	54625	genome.wustl.edu	37	3	122447361	122447361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017554.2	+1	validated	p.D1775Y	0.999	284	0%	242	26.4%	85	50.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PARP,superfamily_ADP-ribosylation
DIRC2	84925	genome.wustl.edu	37	3	122575187	122575187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032839.2	+1	reviewed	p.V326F	1.000	1073	0%	696	24.3%	30	43.3%	possibly_damaging(0.867)	deleterious(0.02)	deleterious(0.720)	superfamily_MFS general substrate transporter
PDIA5	10954	genome.wustl.edu	37	3	122843131	122843131	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000316218	+1	known	p.F238	1.000	262	0.4%	170	29.4%	31	35.4%	-	-	-	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
PDIA5	10954	genome.wustl.edu	37	3	122849426	122849426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000316218	+1	known	p.K291N	1.000	189	0%	114	28.1%	24	41.6%	benign(0.431)	tolerated(0.13)	neutral(0.393)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
SEC22A	26984	genome.wustl.edu	37	3	122943992	122943992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012430.4	+1	reviewed	p.R130M	1.000	215	0%	114	26.3%	7	14.2%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
ADCY5	111	genome.wustl.edu	37	3	123044184	123044184	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183357.1	-1	validated	p.K691	1.000	137	0%	87	29.9%	1	0%	-	-	-	HMMPfam_DUF1053
KALRN	8997	genome.wustl.edu	37	3	124103695	124103695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001024660.3	+1	reviewed	p.T590A	1.000	57	0%	59	22%	1	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
KALRN	8997	genome.wustl.edu	37	3	124352735	124352735	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001024660.3	+1	reviewed	p.E1834*	1.000	315	0%	104	28.8%	1	0%	-	-	-	NULL
UMPS	7372	genome.wustl.edu	37	3	124456473	124456473	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000373.3	+1	reviewed	p.E123	0.990	295	0%	242	19.4%	36	50%	-	-	-	HMMPfam_Pribosyltran,superfamily_PRTase-like
MUC13	56667	genome.wustl.edu	37	3	124646763	124646763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033049.2	-1	validated	p.A43S	0.000	449	0%	157	22.9%	0	-	benign(0.001)	tolerated(0.77)	neutral(0.001)	NULL
HEG1	57493	genome.wustl.edu	37	3	124696757	124696757	+	Missense_Mutation	SNP	G	G	A	rs186214189	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020733.1	-1	validated	p.A1256V	0.985	83	0%	26	30.8%	0	-	probably_damaging(0.979)	tolerated(0.96)	neutral(0.422)	NULL
HEG1	57493	genome.wustl.edu	37	3	124731685	124731685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020733.1	-1	validated	p.G913E	0.000	418	0%	271	22.9%	0	-	benign(0.026)	tolerated(0.12)	neutral(0.262)	NULL
HEG1	57493	genome.wustl.edu	37	3	124732330	124732330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020733.1	-1	validated	p.S698Y	0.019	554	0%	364	21.2%	1	0%	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	NULL
ZNF148	7707	genome.wustl.edu	37	3	124952107	124952107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021964.2	-1	validated	p.A488V	0.999	253	0%	75	32%	5	40%	possibly_damaging(0.894)	deleterious(0.01)	deleterious(0.758)	NULL
SNX4	8723	genome.wustl.edu	37	3	125170262	125170262	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003794.2	-1	reviewed	p.E398*	1.000	324	0%	190	18.4%	27	3.7%	-	-	-	NULL
SNX4	8723	genome.wustl.edu	37	3	125208287	125208287	+	Silent	SNP	C	C	T	rs73862103	byCluster;by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003794.2	-1	reviewed	p.A206	1.000	398	0%	360	20%	17	5.8%	-	-	-	NULL
SLC41A3	54946	genome.wustl.edu	37	3	125725258	125725258	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008485.1	-1	validated	p.S506T	0.070	119	0%	93	22.6%	29	48.2%	benign(0.382)	deleterious(0)	deleterious(0.567)	NULL
SLC41A3	54946	genome.wustl.edu	37	3	125734401	125734401	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008485.1	-1	validated	p.I302	1.000	368	0%	197	15.7%	50	40%	-	-	-	NULL
SLC41A3	54946	genome.wustl.edu	37	3	125775267	125775267	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008487.1	-1	validated	p.V43	0.003	146	0%	86	18.6%	0	-	-	-	-	NULL
ALDH1L1	10840	genome.wustl.edu	37	3	125855629	125855629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012190.2	-1	reviewed	p.T441I	1.000	255	0%	138	21%	0	-	probably_damaging(0.991)	tolerated(0.27)	deleterious(0.478)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
CCDC37	348807	genome.wustl.edu	37	3	126126042	126126042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182628.2	+1	validated	p.S26I	0.007	288	0%	237	10.5%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
CCDC37	348807	genome.wustl.edu	37	3	126138607	126138607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182628.2	+1	validated	p.E287K	0.268	84	0%	82	18.3%	2	50%	benign(0.02)	tolerated(0.46)	neutral(0.013)	NULL
UROC1	131669	genome.wustl.edu	37	3	126208141	126208141	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144639.2	-1	reviewed	p.Y562	0.077	167	0%	135	23%	0	-	-	-	-	HMMPfam_Urocanase,superfamily_Urocanase
UROC1	131669	genome.wustl.edu	37	3	126211274	126211274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144639.2	-1	reviewed	p.C532Y	0.005	85	0%	85	28.2%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_Urocanase,superfamily_Urocanase
UROC1	131669	genome.wustl.edu	37	3	126222857	126222857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144639.2	-1	reviewed	p.R295C	1.000	91	0%	105	25.7%	0	-	possibly_damaging(0.938)	deleterious(0.01)	deleterious(0.789)	HMMPfam_Urocanase,superfamily_Urocanase
UROC1	131669	genome.wustl.edu	37	3	126236474	126236474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144639.2	-1	reviewed	p.P30H	0.990	24	0%	33	30.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLXNA1	5361	genome.wustl.edu	37	3	126708351	126708351	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032242.3	+1	validated	p.A282	0.140	34	0%	42	16.7%	4	50%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
PLXNA1	5361	genome.wustl.edu	37	3	126710272	126710272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032242.3	+1	validated	p.P391S	1.000	23	0%	40	20%	5	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
PLXNA1	5361	genome.wustl.edu	37	3	126710345	126710345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032242.3	+1	validated	p.A415V	1.000	17	0%	37	24.3%	1	100%	benign(0.033)	deleterious(0.04)	neutral(0.350)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
PLXNA1	5361	genome.wustl.edu	37	3	126741655	126741655	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032242.3	+1	validated	p.F1429	1.000	199	0%	240	22.9%	13	46.1%	-	-	-	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNA1	5361	genome.wustl.edu	37	3	126747903	126747903	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032242.3	+1	validated	p.N1556	0.991	126	0%	121	34.7%	19	57.8%	-	-	-	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNA1	5361	genome.wustl.edu	37	3	126748852	126748852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032242.3	+1	validated	p.D1646G	1.000	72	0%	44	11.4%	41	41.4%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
C3orf56	285311	genome.wustl.edu	37	3	126915582	126915582	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000398112	+1	known	p.F18	0.000	56	0%	63	23.8%	0	-	-	-	-	NULL
PODXL2	50512	genome.wustl.edu	37	3	127379340	127379340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015720.2	+1	validated	p.H157Y	0.827	198	0.5%	120	31.7%	29	68.9%	unknown(0)	deleterious(0)	-	NULL
KBTBD12	166348	genome.wustl.edu	37	3	127642395	127642395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207335.2	+1	validated	p.S164I	1.000	141	0%	64	21.9%	0	-	possibly_damaging(0.929)	tolerated(0.13)	deleterious(0.629)	HMMPfam_BACK
RUVBL1	8607	genome.wustl.edu	37	3	127806666	127806666	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000478892	-1	known	p.N145K	0.001	300	0%	211	17.5%	69	100%	unknown(0)	tolerated(0.65)	-	HMMPfam_TIP49,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAJB8	165721	genome.wustl.edu	37	3	128181671	128181671	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153330.2	-1	validated	p.E140*	0.285	73	0%	72	12.5%	0	-	-	-	-	NULL
RAB7A	7879	genome.wustl.edu	37	3	128532244	128532244	+	Silent	SNP	G	G	A	rs61748098		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004637.5	+1	reviewed	p.S201	0.074	177	0%	66	15.2%	391	36.5%	-	-	-	HMMSmart_SM00176
ACAD9	28976	genome.wustl.edu	37	3	128603565	128603565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014049.4	+1	reviewed	p.V74M	0.041	286	0%	315	21.3%	11	45.4%	benign(0.127)	tolerated(0.06)	neutral(0.333)	HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM
ACAD9	28976	genome.wustl.edu	37	3	128627872	128627872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014049.4	+1	reviewed	p.R472Q	0.180	44	0%	55	20%	51	37.2%	probably_damaging(0.987)	tolerated(0.37)	neutral(0.456)	NULL
RAB43	339122	genome.wustl.edu	37	3	128810091	128810091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198490.1	-1	validated	p.A163T	0.995	85	0%	97	20.6%	21	38%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CNBP	7555	genome.wustl.edu	37	3	128889344	128889344	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127192.1	-1	reviewed	p.G164	1.000	239	0%	151	28.5%	291	3.7%	-	-	-	HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_Retrovirus zinc finger-like domains
C3orf37	56941	genome.wustl.edu	37	3	129017317	129017317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001006109.1	+1	validated	p.L192M	0.569	277	0%	128	25%	107	31.7%	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	HMMPfam_DUF159
C3orf37	56941	genome.wustl.edu	37	3	129023554	129023554	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001006109.1	+1	validated	p.Q317	0.972	284	0%	218	20.2%	100	35%	-	-	-	NULL
C3orf25	90288	genome.wustl.edu	37	3	129137290	129137290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000326085	-1	known	p.K163R	0.004	107	0%	52	17.3%	0	-	possibly_damaging(0.707)	tolerated(0.29)	neutral(0.284)	NULL
LOC100288961	100288961	genome.wustl.edu	37	3	129140492	129140492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342397.1	+1	model	p.L80M	0.000	305	0%	187	14.4%	0	-	possibly_damaging(0.519)	tolerated(0.12)	neutral(0.435)	NULL
IFT122	55764	genome.wustl.edu	37	3	129226560	129226560	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052985.2	+1	reviewed	p.L999fs	0.999	-	-	-	-	-	-	-	-	-	NULL
IFT122	55764	genome.wustl.edu	37	3	129236313	129236313	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052985.2	+1	reviewed	p.D1140	1.000	172	0%	169	24.3%	24	62.5%	-	-	-	NULL
PLXND1	23129	genome.wustl.edu	37	3	129285412	129285412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015103.2	-1	validated	p.S1383R	0.897	124	0%	164	28.7%	38	15.7%	benign(0.01)	tolerated(0.23)	neutral(0.042)	HMMPfam_Plexin_cytopl
PLXND1	23129	genome.wustl.edu	37	3	129294312	129294312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015103.2	-1	validated	p.V844F	1.000	41	0%	43	11.6%	14	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
ALG1L2	644974	genome.wustl.edu	37	3	129812003	129812003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136152.1	+1	validated	p.G105C	1.000	338	0%	370	15.7%	0	-	-	-	-	HMMPfam_Glycos_transf_1
COL6A6	131873	genome.wustl.edu	37	3	130284398	130284398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102608.1	+1	provisional	p.R408W	0.408	131	0%	120	24.2%	0	-	probably_damaging(1)	-	-	superfamily_vWA-like
COL6A6	131873	genome.wustl.edu	37	3	130300513	130300513	+	Missense_Mutation	SNP	G	G	A	rs141159632	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102608.1	+1	provisional	p.R1219H	0.992	357	0%	140	11.4%	0	-	benign(0.007)	-	-	HMMSmart_SM00327,superfamily_vWA-like
COL6A6	131873	genome.wustl.edu	37	3	130368383	130368383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102608.1	+1	provisional	p.P1904S	0.999	65	0%	39	28.2%	0	-	possibly_damaging(0.643)	-	-	HMMSmart_SM00327,superfamily_vWA-like
COL6A6	131873	genome.wustl.edu	37	3	130394106	130394106	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102608.1	+1	provisional	p.F2219	0.921	306	0%	85	16.5%	0	-	-	-	-	NULL
PIK3R4	30849	genome.wustl.edu	37	3	130452904	130452904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014602.2	-1	validated	p.G313V	1.000	53	0%	45	13.3%	7	57.1%	possibly_damaging(0.909)	deleterious(0)	deleterious(0.806)	superfamily_ARM-type_fold
PIK3R4	30849	genome.wustl.edu	37	3	130463488	130463488	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014602.2	-1	validated	p.R192M	1.000	472	0%	239	25.1%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
ATP2C1	27032	genome.wustl.edu	37	3	130686224	130686224	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000504612	+1	known	p.G377E	0.998	315	0%	116	17.2%	29	24.1%	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ATP2C1	27032	genome.wustl.edu	37	3	130716497	130716497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001486.1	+1	reviewed	p.R764H	1.000	482	0%	165	21.2%	55	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
ASTE1	28990	genome.wustl.edu	37	3	130733028	130733028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014065.2	-1	validated	p.T638I	0.000	143	0%	90	17.8%	16	37.5%	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
LOC100289095	100289095	genome.wustl.edu	37	3	131245423	131245423	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342398.1	+1	model	p.L41	0.462	79	0%	66	12.1%	7	0%	-	-	-	NULL
LOC100289095	100289095	genome.wustl.edu	37	3	131245503	131245503	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342398.1	+1	model	p.Q67H	0.275	144	0%	119	15.1%	2	0%	-	-	-	NULL
ACPP	55	genome.wustl.edu	37	3	132086623	132086623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134194.1	+1	reviewed	p.R405H	0.289	692	0%	360	23.1%	2	50%	benign(0.003)	deleterious(0.03)	neutral(0.364)	NULL
DNAJC13	23317	genome.wustl.edu	37	3	132218072	132218072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015268.3	+1	validated	p.P1420L	1.000	296	0%	59	33.9%	7	28.5%	benign(0.221)	tolerated(0.14)	neutral(0.272)	superfamily_ARM repeat
DNAJC13	23317	genome.wustl.edu	37	3	132235294	132235294	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015268.3	+1	validated	p.Y1838	1.000	506	0%	117	23.9%	20	45%	-	-	-	superfamily_ARM repeat
DNAJC13	23317	genome.wustl.edu	37	3	132241775	132241775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015268.3	+1	validated	p.P1926H	1.000	132	0%	40	27.5%	19	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
CCRL1	51554	genome.wustl.edu	37	3	132319920	132319920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016557.2	+1	reviewed	p.L227F	0.981	139	0%	58	22.4%	7	57.1%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_7tm_1,superfamily_SSF81321
CCRL1	51554	genome.wustl.edu	37	3	132320115	132320115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016557.2	+1	reviewed	p.A292T	0.999	379	0%	120	19.2%	12	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
UBA5	79876	genome.wustl.edu	37	3	132390941	132390941	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024818.3	+1	reviewed	p.L244	1.000	277	0%	127	23.6%	24	37.5%	-	-	-	superfamily_MoeB
NPHP3	27031	genome.wustl.edu	37	3	132400931	132400931	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000512094	-1	known	p.*88R	1.000	312	0%	142	23.2%	6	50%	-	-	-	NULL
NPHP3	27031	genome.wustl.edu	37	3	132405172	132405172	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153240.3	-1	reviewed	p.K1087	1.000	303	0%	158	22.2%	8	37.5%	-	-	-	superfamily_TPR-like
TMEM108	66000	genome.wustl.edu	37	3	133099057	133099057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136469.1	+1	validated	p.P168S	0.425	19	0%	35	28.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TOPBP1	11073	genome.wustl.edu	37	3	133368630	133368630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007027.3	-1	reviewed	p.A416V	0.011	259	0%	154	26%	5	40%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
SRPRB	58477	genome.wustl.edu	37	3	133538578	133538578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021203.3	+1	reviewed	p.D262Y	1.000	138	0%	90	24.4%	103	32%	possibly_damaging(0.617)	deleterious(0.04)	deleterious(0.564)	superfamily_P-loop containing nucleoside triphosphate hydrolases
KY	339855	genome.wustl.edu	37	3	134343959	134343959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178554.4	-1	validated	p.S140Y	0.997	231	0%	105	28.6%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
EPHB1	2047	genome.wustl.edu	37	3	134670764	134670764	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004441.4	+1	reviewed	p.C225	1.000	268	0%	68	20.6%	0	-	-	-	-	NULL
EPHB1	2047	genome.wustl.edu	37	3	134911645	134911645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004441.4	+1	reviewed	p.A704T	0.998	376	0%	109	20.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
EPHB1	2047	genome.wustl.edu	37	3	134967276	134967276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004441.4	+1	reviewed	p.A872V	0.995	100	0%	23	26.1%	1	0%	benign(0.028)	tolerated(0.12)	neutral(0.262)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PPP2R3A	5523	genome.wustl.edu	37	3	135721536	135721536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002718.3	+1	reviewed	p.T399N	0.004	214	0%	72	19.4%	1	0%	benign(0.009)	deleterious(0.02)	neutral(0.384)	NULL
MSL2	55167	genome.wustl.edu	37	3	135870274	135870274	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018133.3	-1	validated	p.C483	1.000	135	0%	71	15.5%	13	30.7%	-	-	-	NULL
STAG1	10274	genome.wustl.edu	37	3	136162174	136162174	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005862.2	-1	reviewed	p.C501G	1.000	531	0%	252	15.5%	8	50%	possibly_damaging(0.736)	tolerated(0.17)	neutral(0.328)	superfamily_ARM-type_fold
STAG1	10274	genome.wustl.edu	37	3	136196168	136196168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005862.2	-1	reviewed	p.S330N	1.000	494	0%	301	22.3%	4	75%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	superfamily_ARM-type_fold
NCK1	4690	genome.wustl.edu	37	3	136665108	136665108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006153.3	+1	reviewed	p.D304Y	1.000	134	0%	58	24.1%	46	43.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
A4GNT	51146	genome.wustl.edu	37	3	137843221	137843221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016161.2	-1	reviewed	p.G303E	0.978	286	0.3%	502	21.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Gb3_synth
A4GNT	51146	genome.wustl.edu	37	3	137843440	137843440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016161.2	-1	reviewed	p.R230M	0.842	256	0%	295	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gb3_synth
NME9	347736	genome.wustl.edu	37	3	138033192	138033192	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000474690	-1	known	p.W78*	0.015	625	0%	299	22.4%	0	-	benign(0.418)	tolerated(0.54)	neutral(0.143)	NULL
ESYT3	83850	genome.wustl.edu	37	3	138191404	138191404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031913.3	+1	validated	p.T647I	0.001	198	0.5%	107	23.4%	0	-	benign(0.001)	tolerated(0.53)	neutral(0.007)	NULL
CEP70	80321	genome.wustl.edu	37	3	138256090	138256090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024491.2	-1	validated	p.R189C	0.478	452	0%	312	18.6%	9	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PRR23A	729627	genome.wustl.edu	37	3	138724917	138724917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134659.1	-1	validated	p.A65V	0.001	12	0.000	9	0.444	0	-	benign(0.328)	deleterious(0.04)	neutral(0.452)	HMMPfam_DUF2476
MRPS22	56945	genome.wustl.edu	37	3	139071620	139071620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020191.2	+1	reviewed	p.Q288H	1.000	494	0%	207	20.3%	117	45.2%	possibly_damaging(0.86)	deleterious(0.03)	deleterious(0.697)	HMMPfam_MRP-S22
COPB2	9276	genome.wustl.edu	37	3	139077108	139077108	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000503326	-1	known	p.*67R	1.000	328	0%	103	25.2%	231	41.1%	-	-	-	NULL
TRIM42	287015	genome.wustl.edu	37	3	140397148	140397148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152616.3	+1	reviewed	p.C26Y	1.000	389	0%	263	17.9%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
TRIM42	287015	genome.wustl.edu	37	3	140401946	140401946	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152616.3	+1	reviewed	p.D328	0.566	245	0%	167	24.6%	0	-	-	-	-	NULL
SLC25A36	55186	genome.wustl.edu	37	3	140692598	140692598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001104647.1	+1	validated	p.R165C	1.000	197	0%	86	16.3%	8	25%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
ZBTB38	253461	genome.wustl.edu	37	3	141162656	141162656	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080412.2	+1	validated	p.R476*	1.000	196	0%	75	25.3%	6	16.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZBTB38	253461	genome.wustl.edu	37	3	141164706	141164706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080412.2	+1	validated	p.G1159D	0.003	171	0%	84	26.2%	5	20%	benign(0.001)	tolerated(0.36)	neutral(0.020)	NULL
RASA2	5922	genome.wustl.edu	37	3	141289844	141289844	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006506.2	+1	reviewed	p.D318	0.994	118	0%	66	21.2%	1	100%	-	-	-	HMMSmart_RasGAP
RASA2	5922	genome.wustl.edu	37	3	141327346	141327346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006506.2	+1	reviewed	p.H678Y	0.999	269	0%	68	27.9%	1	100%	possibly_damaging(0.872)	deleterious(0.02)	deleterious(0.722)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
GK5	256356	genome.wustl.edu	37	3	141884613	141884613	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039547.2	-1	validated	e16-1	1.000	359	0%	339	11.2%	0	-	-	-	-	-
GK5	256356	genome.wustl.edu	37	3	141900339	141900339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039547.2	-1	validated	p.D338Y	1.000	189	0%	111	25.2%	3	66.6%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_FGGY_C,superfamily_Actin-like ATPase domain
XRN1	54464	genome.wustl.edu	37	3	142095330	142095330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019001.3	-1	validated	p.S941Y	1.000	131	0%	97	23.7%	2	50%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
ATR	545	genome.wustl.edu	37	3	142171992	142171992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001184.3	-1	reviewed	p.T2580N	1.000	520	0%	552	20.3%	29	34.4%	unknown(0)	-	-	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
ATR	545	genome.wustl.edu	37	3	142215300	142215300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001184.3	-1	reviewed	p.A1934D	1.000	174	0%	94	19.1%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FAT,superfamily_ARM repeat,superfamily_TPR-like
ATR	545	genome.wustl.edu	37	3	142222256	142222256	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001184.3	-1	reviewed	p.L1746I	1.000	115	0%	74	21.6%	2	50%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	superfamily_ARM repeat,superfamily_TPR-like
ATR	545	genome.wustl.edu	37	3	142268448	142268448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001184.3	-1	reviewed	p.R1015Q	1.000	165	0%	50	16%	1	100%	possibly_damaging(0.946)	tolerated(0.36)	neutral(0.410)	superfamily_ARM repeat
ATR	545	genome.wustl.edu	37	3	142278203	142278203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001184.3	-1	reviewed	p.T541I	0.984	392	0%	300	16.3%	0	-	probably_damaging(0.99)	tolerated(0.48)	neutral(0.452)	superfamily_ARM repeat
PCOLCE2	26577	genome.wustl.edu	37	3	142542389	142542389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013363.3	-1	validated	p.C312R	1.000	239	0%	160	24.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TIMP-like,HMMPfam_NTR,HMMSmart_SM00643
PAQR9	344838	genome.wustl.edu	37	3	142681791	142681791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198504.2	-1	validated	p.L130M	1.000	41	0%	47	31.9%	0	-	possibly_damaging(0.826)	tolerated(0.09)	deleterious(0.610)	HMMPfam_HlyIII
PAQR9	344838	genome.wustl.edu	37	3	142681897	142681897	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198504.2	-1	validated	p.L94	1.000	110	0%	136	12.5%	0	-	-	-	-	HMMPfam_HlyIII
U2SURP	23350	genome.wustl.edu	37	3	142741830	142741830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080415.1	+1	provisional	p.A385V	1.000	194	0%	76	18.4%	19	52.6%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	superfamily_RNA-binding domain RBD
CHST2	9435	genome.wustl.edu	37	3	142840520	142840520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004267.3	+1	validated	p.L288M	1.000	25	0%	25	24%	18	33.3%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC9A9	285195	genome.wustl.edu	37	3	143371135	143371135	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173653.3	-1	reviewed	p.E239	0.996	156	0%	30	23.3%	1	0%	-	-	-	HMMPfam_Na_H_Exchanger
C3orf58	205428	genome.wustl.edu	37	3	143708674	143708674	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173552.3	+1	validated	p.N428	0.971	147	0%	122	15.6%	3	0%	-	-	-	NULL
PLOD2	5352	genome.wustl.edu	37	3	145788560	145788560	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182943.2	-1	reviewed	p.G741*	1.000	237	0%	53	13.2%	2	0%	-	-	-	HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc
PLOD2	5352	genome.wustl.edu	37	3	145796908	145796908	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182943.2	-1	reviewed	p.E499*	1.000	424	0%	154	25.3%	1	0%	-	-	-	NULL
ZIC4	84107	genome.wustl.edu	37	3	147113887	147113887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000383075	-1	known	p.T147I	1.000	71	0%	65	32.3%	0	-	benign(0.053)	tolerated(0.07)	neutral(0.323)	HMMSmart_SM00355
ZIC1	7545	genome.wustl.edu	37	3	147131304	147131304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003412.3	+1	reviewed	p.A437V	1.000	423	0%	383	19.6%	1	0%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
CPB1	1360	genome.wustl.edu	37	3	148545843	148545843	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001871.2	+1	reviewed	p.R42	0.000	354	0%	116	31%	0	-	-	-	-	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
CPA3	1359	genome.wustl.edu	37	3	148603900	148603900	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001870.2	+1	reviewed	p.G334	0.133	384	0%	146	24.7%	2	0%	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
HLTF	6596	genome.wustl.edu	37	3	148778437	148778437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003071.3	-1	reviewed	p.R426S	0.002	429	0%	384	11.5%	4	0%	benign(0.269)	tolerated(0.14)	neutral(0.278)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
HPS3	84343	genome.wustl.edu	37	3	148857833	148857833	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032383.3	+1	reviewed	p.F87C	0.909	186	0%	108	25%	6	66.6%	probably_damaging(0.989)	tolerated(0.06)	deleterious(0.762)	NULL
CP	1356	genome.wustl.edu	37	3	148905969	148905969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000096.3	-1	reviewed	p.F578L	1.000	291	0%	91	20.9%	47	51%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_Cupredoxins
CP	1356	genome.wustl.edu	37	3	148928166	148928166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000096.3	-1	reviewed	p.G132V	1.000	448	0%	205	23.9%	30	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cupredoxins
RNF13	11342	genome.wustl.edu	37	3	149638969	149638969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007282.4	+1	reviewed	p.R219C	1.000	123	0%	53	22.6%	34	14.7%	possibly_damaging(0.541)	tolerated(0.05)	deleterious(0.529)	NULL
TSC22D2	9819	genome.wustl.edu	37	3	150127166	150127166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014779.2	+1	provisional	p.S10N	1.000	41	0%	65	16.9%	7	28.5%	benign(0.119)	deleterious(0)	neutral(0.454)	NULL
EIF2A	83939	genome.wustl.edu	37	3	150290114	150290114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032025.3	+1	validated	p.G394D	1.000	287	0%	117	25.6%	66	42.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_eIF2A
ENSG00000198843	0	genome.wustl.edu	37	3	150340841	150340841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000361622	+1	known	p.S87Y	1.000	341	0%	364	22.3%	74	31%	probably_damaging(0.964)	deleterious(0.02)	deleterious(0.789)	HMMPfam_SelT
FAM194A	131831	genome.wustl.edu	37	3	150421596	150421596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152394.3	-1	validated	p.E30D	0.000	235	0%	218	17%	1	0%	benign(0.071)	tolerated(0.55)	neutral(0.012)	NULL
MED12L	116931	genome.wustl.edu	37	3	150877665	150877665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053002.4	+1	reviewed	p.A295V	1.000	196	0%	131	22.1%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
MED12L	116931	genome.wustl.edu	37	3	150908597	150908597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053002.4	+1	reviewed	p.A616V	0.959	347	0.3%	89	20.2%	0	-	benign(0.311)	tolerated(0.42)	neutral(0.111)	NULL
P2RY14	9934	genome.wustl.edu	37	3	150931158	150931158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001081455.1	-1	reviewed	p.A316D	0.000	411	0%	129	20.9%	2	50%	benign(0.006)	tolerated(0.08)	neutral(0.300)	superfamily_Family A G protein-coupled receptor-like
GPR87	53836	genome.wustl.edu	37	3	151012351	151012351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023915.3	-1	validated	p.A228V	1.000	227	0%	58	15.5%	0	-	benign(0.008)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
IGSF10	285313	genome.wustl.edu	37	3	151154992	151154992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178822.4	-1	validated	p.H2453Y	1.000	274	0%	173	31.2%	0	-	probably_damaging(0.993)	tolerated(0.21)	deleterious(0.494)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
MBNL1	4154	genome.wustl.edu	37	3	152177110	152177110	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207293.1	+1	validated	p.Q387	1.000	199	0%	133	22.6%	20	25%	-	-	-	NULL
C3orf79	152118	genome.wustl.edu	37	3	153202406	153202406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001101337.1	+1	provisional	p.W21R	0.001	378	0.3%	130	12.3%	0	-	unknown(0)	-	-	NULL
GPR149	344758	genome.wustl.edu	37	3	154138928	154138928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001038705.1	-1	provisional	p.S508Y	0.099	412	0%	298	13.8%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
GPR149	344758	genome.wustl.edu	37	3	154147337	154147337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001038705.1	-1	provisional	p.T23M	1.000	157	0%	212	18.9%	0	-	probably_damaging(0.997)	tolerated(0.21)	deleterious(0.510)	NULL
PLCH1	23007	genome.wustl.edu	37	3	155232616	155232616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130960.1	-1	validated	p.L498M	0.406	358	0%	232	12.9%	4	25%	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	superfamily_PLC-like phosphodiesterases
KCNAB1	7881	genome.wustl.edu	37	3	155861167	155861167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003471.3	+1	reviewed	p.S67L	0.101	81	0%	41	22%	0	-	benign(0.253)	deleterious(0.02)	neutral(0.409)	NULL
KCNAB1	7881	genome.wustl.edu	37	3	156249236	156249236	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172160.2	+1	reviewed	p.L374	1.000	302	0%	103	28.2%	0	-	-	-	-	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
LEKR1	389170	genome.wustl.edu	37	3	156710979	156710979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004316.2	+1	validated	p.R37I	0.862	243	0%	121	23.1%	0	-	probably_damaging(0.959)	deleterious(0.04)	deleterious(0.752)	NULL
LEKR1	389170	genome.wustl.edu	37	3	156763153	156763153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004316.2	+1	validated	p.R261C	1.000	231	0%	48	10.4%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PTX3	5806	genome.wustl.edu	37	3	157154762	157154762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002852.3	+1	validated	p.A14T	0.004	502	0%	659	18.7%	2	50%	benign(0.026)	tolerated(0.18)	neutral(0.057)	NULL
C3orf55	152078	genome.wustl.edu	37	3	157318170	157318170	+	Nonstop_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130001.1	+1	validated	p.*134Y	0.004	209	0%	53	13.2%	1	100%	-	-	-	NULL
SHOX2	6474	genome.wustl.edu	37	3	157818085	157818085	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006884.3	-1	reviewed	p.R191*	1.000	458	0.2%	734	21.9%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
GFM1	85476	genome.wustl.edu	37	3	158402436	158402436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024996.5	+1	reviewed	p.G630R	1.000	208	0%	91	20.9%	55	25.4%	unknown(0)	-	-	HMMPfam_EFG_IV,superfamily_Ribosomal_S5_D2-typ_fold
MFSD1	64747	genome.wustl.edu	37	3	158541309	158541309	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022736.2	+1	validated	p.Y390*	1.000	655	0%	289	17.6%	55	10.9%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SMC4	10051	genome.wustl.edu	37	3	160141586	160141586	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002800.1	+1	validated	p.G761	0.998	389	0%	252	19.8%	35	42.8%	-	-	-	HMMPfam_SMC_N,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC4	10051	genome.wustl.edu	37	3	160146550	160146550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002800.1	+1	validated	p.A872D	0.000	225	0%	107	24.3%	27	37%	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_SMC_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC4	10051	genome.wustl.edu	37	3	160150250	160150250	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002800.1	+1	validated	p.A1159	0.910	80	0%	79	31.6%	64	45.3%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
KPNA4	3840	genome.wustl.edu	37	3	160227610	160227610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002268.3	-1	reviewed	p.T396I	1.000	562	0%	401	23.7%	34	23.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
ARL14	80117	genome.wustl.edu	37	3	160395467	160395467	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025047.2	+1	validated	p.E111D	0.545	205	0%	100	21%	1	100%	benign(0.095)	tolerated(1)	neutral(0.007)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPM1L	151742	genome.wustl.edu	37	3	160679678	160679678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139245.2	+1	provisional	p.T185N	1.000	217	0%	172	18%	0	-	benign(0.011)	tolerated(0.4)	neutral(0.017)	HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
B3GALNT1	8706	genome.wustl.edu	37	3	160803869	160803869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001038628.1	-1	reviewed	p.S225Y	0.999	69	0%	45	13.3%	12	41.6%	probably_damaging(0.96)	deleterious(0.03)	deleterious(0.768)	HMMPfam_Galactosyl_T
B3GALNT1	8706	genome.wustl.edu	37	3	160804137	160804137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001038628.1	-1	reviewed	p.E136K	1.000	262	0%	152	24.3%	11	54.5%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_Galactosyl_T
SI	6476	genome.wustl.edu	37	3	164776849	164776849	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001041.3	-1	reviewed	p.R434*	0.000	366	0%	116	17.2%	0	-	-	-	-	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164785184	164785184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001041.3	-1	reviewed	p.K193N	0.000	291	0%	112	17%	0	-	benign(0.061)	deleterious(0.04)	neutral(0.353)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164906343	164906343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014926.2	-1	validated	p.R759H	0.951	162	0%	128	24.2%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
BCHE	590	genome.wustl.edu	37	3	165491178	165491178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000055.2	-1	reviewed	p.G601S	0.973	401	0.5%	144	29.9%	1	0%	benign(0.002)	tolerated(0.39)	neutral(0.016)	HMMPfam_AChE_tetra
ZBBX	79740	genome.wustl.edu	37	3	167023537	167023537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024687.2	-1	validated	p.A540D	0.011	222	0%	149	24.8%	1	100%	benign(0.004)	tolerated(0.35)	neutral(0.021)	NULL
ZBBX	79740	genome.wustl.edu	37	3	167023551	167023551	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024687.2	-1	validated	p.R535S	0.001	228	0%	155	11.6%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
SERPINI2	5276	genome.wustl.edu	37	3	167167147	167167147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006217.3	-1	reviewed	p.F336L	1.000	307	0%	220	24.5%	1	0%	benign(0.236)	deleterious(0.02)	neutral(0.407)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
MECOM	2122	genome.wustl.edu	37	3	168830627	168830627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000494292	-1	known	p.A842D	1.000	590	0%	279	20.4%	45	46.6%	possibly_damaging(0.906)	tolerated(0.12)	deleterious(0.620)	NULL
LRRC31	79782	genome.wustl.edu	37	3	169579529	169579529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024727.2	-1	validated	p.G83D	0.954	474	0.4%	254	20.1%	0	-	probably_damaging(0.995)	tolerated(0.36)	deleterious(0.478)	NULL
SEC62	7095	genome.wustl.edu	37	3	169694783	169694783	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003262.3	+1	reviewed	p.K65	1.000	228	0%	228	27.2%	35	28.5%	-	-	-	NULL
SEC62	7095	genome.wustl.edu	37	3	169710756	169710756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003262.3	+1	reviewed	p.E369K	1.000	222	0%	69	27.5%	74	31%	possibly_damaging(0.945)	deleterious(0.03)	deleterious(0.754)	NULL
PHC3	80012	genome.wustl.edu	37	3	169889124	169889124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000497658	-1	known	p.F139L	0.084	60	0%	75	13.3%	0	-	benign(0.053)	-	-	NULL
PHC3	80012	genome.wustl.edu	37	3	169896637	169896637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024947.3	-1	validated	p.T35I	0.989	286	0%	354	24.9%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
RPL22L1	200916	genome.wustl.edu	37	3	170585875	170585875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099645.1	-1	validated	p.L51I	1.000	342	0%	326	16.9%	138	39.8%	possibly_damaging(0.773)	deleterious(0)	deleterious(0.732)	HMMPfam_Ribosomal_L22e
PLD1	5337	genome.wustl.edu	37	3	171330197	171330197	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000446289	-1	known	p.A181V	1.000	230	0%	81	18.5%	2	0%	-	-	-	HMMPfam_PLDc,HMMSmart_SM00155,superfamily_Phospholipase D/nuclease
GHSR	2693	genome.wustl.edu	37	3	172166029	172166029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198407.2	-1	reviewed	p.A59T	0.893	17	0%	23	30.4%	0	-	benign(0.001)	tolerated(1)	-	superfamily_Family A G protein-coupled receptor-like
GHSR	2693	genome.wustl.edu	37	3	172166098	172166098	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198407.2	-1	reviewed	p.Q36*	0.012	17	0%	21	33.3%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
NLGN1	22871	genome.wustl.edu	37	3	173996697	173996697	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014932.2	+1	reviewed	p.S302	1.000	211	0%	94	13.8%	0	-	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
NAALADL2	254827	genome.wustl.edu	37	3	174814660	174814660	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207015.2	+1	validated	p.Q42*	1.000	114	0%	64	20.3%	0	-	-	-	-	NULL
TBL1XR1	79718	genome.wustl.edu	37	3	176767841	176767841	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024665.4	-1	reviewed	p.R216	1.000	388	0%	152	26.3%	19	26.3%	-	-	-	HMMSmart_WD40
TBL1XR1	79718	genome.wustl.edu	37	3	176769462	176769462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024665.4	-1	reviewed	p.A86D	1.000	227	0%	108	23.1%	12	41.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ZMAT3	64393	genome.wustl.edu	37	3	178785519	178785519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022470.3	-1	reviewed	p.V8M	0.864	398	0%	408	20.6%	1	0%	benign(0.003)	tolerated(0.28)	neutral(0.032)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178921544	178921544	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006218.2	+1	reviewed	p.T342	0.733	153	0%	139	23%	3	100%	-	-	-	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
KCNMB3	27094	genome.wustl.edu	37	3	178962304	178962304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014407.3	-1	reviewed	p.E146D	1.000	249	0%	129	9.3%	4	25%	possibly_damaging(0.495)	tolerated(0.29)	neutral(0.194)	HMMPfam_CaKB
MFN1	55669	genome.wustl.edu	37	3	179107920	179107920	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033540.2	+1	reviewed	p.L714R	0.039	173	0%	143	21.7%	18	55.5%	possibly_damaging(0.951)	tolerated(0.15)	deleterious(0.635)	HMMPfam_Fzo_mitofusin
GNB4	59345	genome.wustl.edu	37	3	179138686	179138686	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021629.3	-1	reviewed	p.T29	0.021	259	0.4%	71	25.4%	0	-	-	-	-	superfamily_WD40 repeat-like
MRPL47	57129	genome.wustl.edu	37	3	179311580	179311580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020409.2	-1	reviewed	p.R169I	1.000	256	0%	172	24.4%	158	39.8%	probably_damaging(0.996)	tolerated(0.55)	deleterious(0.469)	NULL
CCDC39	339829	genome.wustl.edu	37	3	180361935	180361935	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181426.1	-1	validated	p.E546	1.000	642	0%	368	13%	0	-	-	-	-	NULL
FXR1	8087	genome.wustl.edu	37	3	180671624	180671624	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005087.2	+1	reviewed	p.L292	0.939	766	0%	280	25.7%	75	45.3%	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
FXR1	8087	genome.wustl.edu	37	3	180687964	180687964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005087.2	+1	reviewed	p.S474N	1.000	216	0%	54	14.8%	191	45%	benign(0.007)	tolerated(0.11)	neutral(0.272)	NULL
MCF2L2	23101	genome.wustl.edu	37	3	182948794	182948794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015078.2	-1	validated	p.R625H	0.006	539	0%	201	19.4%	1	0%	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
B3GNT5	84002	genome.wustl.edu	37	3	182987968	182987968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032047.4	+1	reviewed	p.L128M	0.996	204	0%	117	12.8%	4	0%	possibly_damaging(0.882)	tolerated(0.08)	deleterious(0.644)	HMMPfam_Galactosyl_T
MCF2L2	23101	genome.wustl.edu	37	3	182994688	182994688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015078.2	-1	validated	p.A612S	0.000	45	0%	31	19.4%	1	0%	benign(0.273)	tolerated(0.48)	neutral(0.040)	superfamily_DBL homology domain (DH-domain)
KLHL6	89857	genome.wustl.edu	37	3	183273167	183273167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130446.2	-1	validated	p.A92V	1.000	170	0%	104	20.2%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
PARL	55486	genome.wustl.edu	37	3	183580483	183580483	+	Splice_Site	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000421484	-1	known	e4+2	1.000	247	0%	86	19.8%	0	-	-	-	-	-
ABCC5	10057	genome.wustl.edu	37	3	183639177	183639177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005688.2	-1	reviewed	p.D1409N	1.000	142	0%	95	22.1%	6	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC5	10057	genome.wustl.edu	37	3	183643385	183643385	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005688.2	-1	reviewed	p.T1390	0.058	385	0%	238	13%	7	14.2%	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC5	10057	genome.wustl.edu	37	3	183700708	183700708	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005688.2	-1	reviewed	p.L227	0.994	186	0%	57	26.3%	2	50%	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC5	10057	genome.wustl.edu	37	3	183707159	183707159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005688.2	-1	reviewed	p.D48Y	1.000	114	0%	39	23.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HTR3D	200909	genome.wustl.edu	37	3	183754577	183754577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145143.1	+1	reviewed	p.H137Y	0.007	168	0%	95	22.1%	0	-	benign(0.119)	deleterious(0.04)	neutral(0.358)	NULL
HTR3D	200909	genome.wustl.edu	37	3	183755837	183755837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145143.1	+1	reviewed	p.S182N	0.362	172	0%	93	19.4%	0	-	benign(0.068)	tolerated(0.19)	neutral(0.054)	superfamily_Neurotransmitter-gated ion-channel transmembrane pore
HTR3C	170572	genome.wustl.edu	37	3	183774818	183774818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130770.2	+1	reviewed	p.S182Y	0.763	416	0%	207	15.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
EIF2B5	8893	genome.wustl.edu	37	3	183855751	183855751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003907.2	+1	reviewed	p.S191I	1.000	120	0%	108	20.4%	25	20%	benign(0.219)	tolerated(0.05)	neutral(0.367)	superfamily_SSF53448
AP2M1	1173	genome.wustl.edu	37	3	183898471	183898471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000431779	+1	known	p.S154R	0.078	374	0%	451	19.3%	0	-	unknown(0)	deleterious(0.01)	-	NULL
VWA5B2	90113	genome.wustl.edu	37	3	183952114	183952114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138345.1	+1	provisional	p.A250V	1.000	78	0%	120	23.3%	1	100%	probably_damaging(0.99)	tolerated(0.16)	deleterious(0.501)	NULL
VWA5B2	90113	genome.wustl.edu	37	3	183956622	183956622	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138345.1	+1	provisional	p.R721	0.091	26	0%	43	14%	0	-	-	-	-	NULL
ECE2	9718	genome.wustl.edu	37	3	183976235	183976235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032331.3	+1	validated	p.G214S	1.000	83	0%	120	19.2%	90	43.3%	possibly_damaging(0.94)	tolerated(0.11)	deleterious(0.657)	superfamily_SSF53335
PSMD2	5708	genome.wustl.edu	37	3	184020548	184020548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002808.3	+1	reviewed	p.E315D	0.999	345	0%	343	15.7%	107	43.9%	benign(0.001)	tolerated(0.41)	neutral(0.015)	superfamily_ARM-type_fold
EIF4G1	1981	genome.wustl.edu	37	3	184044716	184044716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182917.3	+1	reviewed	p.A1125S	1.000	314	0%	331	24.8%	189	41.2%	probably_damaging(0.987)	tolerated(0.07)	deleterious(0.756)	NULL
CLCN2	1181	genome.wustl.edu	37	3	184071135	184071135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004366.4	-1	reviewed	p.R644H	1.000	58	0%	42	16.7%	7	57.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_CBS
CLCN2	1181	genome.wustl.edu	37	3	184071983	184071983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004366.4	-1	reviewed	p.A543T	1.000	129	0%	82	9.8%	7	71.4%	probably_damaging(0.987)	tolerated(0.06)	deleterious(0.759)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
THPO	7066	genome.wustl.edu	37	3	184090547	184090547	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000452754	-1	known	p.G267*	0.000	613	0.2%	522	23.2%	0	-	-	-	-	NULL
CHRD	8646	genome.wustl.edu	37	3	184102473	184102473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003741.2	+1	reviewed	p.R530H	1.000	28	0%	44	29.5%	5	0%	benign(0.364)	deleterious(0.03)	deleterious(0.480)	NULL
EPHB3	2049	genome.wustl.edu	37	3	184290849	184290849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004443.3	+1	reviewed	p.E247D	1.000	39	0%	59	30.5%	0	-	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	NULL
EPHB3	2049	genome.wustl.edu	37	3	184297350	184297350	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004443.3	+1	reviewed	p.D629	0.839	202	0%	227	25.6%	3	0%	-	-	-	superfamily_Kinase_like
C3orf70	285382	genome.wustl.edu	37	3	184801072	184801072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001025266.1	-1	predicted	p.P159L	1.000	290	0%	109	18.3%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
EHHADH	1962	genome.wustl.edu	37	3	184922307	184922307	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001966.3	-1	reviewed	p.Q269	0.999	141	0%	43	16.3%	4	25%	-	-	-	superfamily_SSF52096
MAP3K13	9175	genome.wustl.edu	37	3	185184657	185184657	+	Nonsense_Mutation	SNP	C	C	T	rs56408536		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004721.3	+1	reviewed	p.R517*	1.000	273	0.4%	70	22.9%	1	0%	-	-	-	NULL
MAP3K13	9175	genome.wustl.edu	37	3	185191357	185191357	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004721.3	+1	reviewed	p.P746	0.006	64	0%	30	16.7%	1	0%	-	-	-	NULL
LIPH	200879	genome.wustl.edu	37	3	185232257	185232257	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000435679	-1	known	p.G23E	0.068	1048	0%	464	10.6%	0	-	-	-	-	NULL
LIPH	200879	genome.wustl.edu	37	3	185241934	185241934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139248.2	-1	reviewed	p.E215K	0.215	430	0%	223	26.5%	0	-	benign(0.002)	tolerated(0.69)	neutral(0.002)	HMMPfam_Lipase,superfamily_SSF53474
TBCCD1	55171	genome.wustl.edu	37	3	186274539	186274539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134415.1	-1	validated	p.A173D	0.093	162	0.6%	121	24%	5	40%	benign(0.118)	tolerated(0.65)	neutral(0.013)	NULL
TBCCD1	55171	genome.wustl.edu	37	3	186276352	186276352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134415.1	-1	validated	p.D116Y	1.000	232	0%	189	20.6%	12	41.6%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
DNAJB11	51726	genome.wustl.edu	37	3	186289925	186289925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016306.4	+1	validated	p.S37Y	1.000	168	0%	303	20.8%	92	33.6%	benign(0.241)	deleterious(0.01)	neutral(0.430)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
HRG	3273	genome.wustl.edu	37	3	186386777	186386777	+	Silent	SNP	G	G	A	rs143118011	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000412.2	+1	reviewed	p.S79	0.008	204	0%	63	20.6%	0	-	-	-	-	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin
ENSG00000200418	0	genome.wustl.edu	37	3	186504132	186504132	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000363548	+1	novel	NULL	0.329	243	0%	236	26.7%	1	0%	-	-	-	-
EIF4A2	1974	genome.wustl.edu	37	3	186504412	186504412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001967.3	+1	validated	p.F250C	1.000	472	0%	437	11.7%	350	26%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
EIF4A2	1974	genome.wustl.edu	37	3	186506991	186506991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001967.3	+1	validated	p.R386H	1.000	399	0%	334	21.3%	590	37.1%	benign(0.222)	deleterious(0.01)	neutral(0.428)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ADIPOQ	9370	genome.wustl.edu	37	3	186570917	186570917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004797.3	+1	reviewed	p.G24W	0.000	151	0%	93	20.4%	0	-	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	NULL
ST6GAL1	6480	genome.wustl.edu	37	3	186760543	186760543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003032.2	+1	reviewed	p.L18I	1.000	312	0%	106	16%	20	50%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
ST6GAL1	6480	genome.wustl.edu	37	3	186760790	186760790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003032.2	+1	reviewed	p.S100I	1.000	121	0%	54	16.7%	12	25%	probably_damaging(0.991)	tolerated(0.5)	neutral(0.454)	NULL
RPL39L	116832	genome.wustl.edu	37	3	186838991	186838991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052969.1	-1	reviewed	p.S33N	1.000	160	0%	56	12.5%	110	46.3%	benign(0)	tolerated(1)	-	HMMPfam_Ribosomal_L39,superfamily_Ribosomal_L39,PatternScan_RIBOSOMAL_L39E
MASP1	5648	genome.wustl.edu	37	3	186944288	186944288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001879.5	-1	reviewed	p.A488T	0.635	213	0%	133	26.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS
BCL6	604	genome.wustl.edu	37	3	187443418	187443418	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130845.1	-1	reviewed	e6-1	1.000	255	0%	278	19.8%	0	-	-	-	-	-
LPP	4026	genome.wustl.edu	37	3	188584083	188584083	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005578.3	+1	reviewed	p.C502	0.979	225	0%	93	26.9%	1	0%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LEPREL1	55214	genome.wustl.edu	37	3	189706776	189706776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018192.3	-1	validated	p.A292V	1.000	156	0%	77	18.2%	12	16.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_TPR-like
CLDN16	10686	genome.wustl.edu	37	3	190106119	190106119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006580.3	+1	reviewed	p.M71L	0.971	671	0%	205	17.6%	2	50%	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
TMEM207	131920	genome.wustl.edu	37	3	190158165	190158165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207316.1	-1	provisional	p.L58M	0.660	42	0%	95	14.7%	0	-	probably_damaging(0.991)	tolerated(0.09)	deleterious(0.740)	NULL
IL1RAP	3556	genome.wustl.edu	37	3	190366168	190366168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002182.3	+1	reviewed	p.R463C	1.000	106	0%	66	18.2%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
LOC647309	647309	genome.wustl.edu	37	3	190573293	190573293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342387.1	-1	model	p.L26I	0.009	344	0%	249	19.7%	1	100%	benign(0.139)	tolerated(0.15)	neutral(0.253)	NULL
ATP13A5	344905	genome.wustl.edu	37	3	193002723	193002723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198505.2	-1	provisional	p.R1069Q	1.000	455	0%	125	27.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81665
ATP13A4	84239	genome.wustl.edu	37	3	193272546	193272546	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032279.2	-1	validated	p.G15*	1.000	354	0%	196	25%	0	-	-	-	-	NULL
OPA1	4976	genome.wustl.edu	37	3	193355014	193355014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130837.2	+1	reviewed	p.L327I	1.000	276	0%	132	11.4%	6	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00053
HES1	3280	genome.wustl.edu	37	3	193855938	193855938	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005524.2	+1	reviewed	p.G253	0.933	18	0%	19	36.8%	82	65.8%	-	-	-	NULL
CPN2	1370	genome.wustl.edu	37	3	194062696	194062696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080513.2	-1	validated	p.L246M	1.000	68	0%	68	10.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_RNI-like
ATP13A3	79572	genome.wustl.edu	37	3	194174446	194174446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024524.3	-1	validated	p.R276K	1.000	491	0%	238	18.5%	3	66.6%	probably_damaging(0.994)	tolerated(0.74)	neutral(0.454)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
ATP13A3	79572	genome.wustl.edu	37	3	194177834	194177834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024524.3	-1	validated	p.M183I	1.000	317	0%	127	16.5%	5	20%	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_Calcium ATPase transmembrane domain M
ACAP2	23527	genome.wustl.edu	37	3	195009960	195009960	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012287.5	-1	validated	p.G688	1.000	293	0%	167	19.2%	6	33.3%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ACAP2	23527	genome.wustl.edu	37	3	195012456	195012456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012287.5	-1	validated	p.A681V	1.000	273	0%	194	18.6%	6	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ACAP2	23527	genome.wustl.edu	37	3	195015468	195015468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012287.5	-1	validated	p.A582V	1.000	185	0%	113	20.4%	3	66.6%	possibly_damaging(0.952)	tolerated(0.31)	neutral(0.423)	NULL
APOD	347	genome.wustl.edu	37	3	195300753	195300753	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001647.3	-1	reviewed	p.N71	0.988	377	0%	189	25.9%	49	0%	-	-	-	superfamily_Lipocalins,HMMPfam_Lipocalin_2
MUC4	4585	genome.wustl.edu	37	3	195487853	195487853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018406.5	-1	reviewed	p.S4789N	0.000	273	0%	304	20.4%	4	100%	unknown(0)	tolerated(0.49)	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195506458	195506458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018406.5	-1	reviewed	p.A3870V	0.016	147	1.4%	131	6.9%	1	0%	probably_damaging(0.959)	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195514970	195514970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018406.5	-1	reviewed	p.A1161S	0.496	390	0%	190	24.7%	1	0%	possibly_damaging(0.748)	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195517635	195517635	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018406.5	-1	reviewed	p.S272	0.000	747	0%	386	22.8%	0	-	-	-	-	NULL
TNK2	10188	genome.wustl.edu	37	3	195593783	195593783	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010938.1	-1	reviewed	p.G1077	0.973	27	0%	55	23.6%	48	14.5%	-	-	-	NULL
TNK2	10188	genome.wustl.edu	37	3	195594305	195594305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010938.1	-1	reviewed	p.T1018N	0.000	39	0%	21	28.6%	4	25%	benign(0.007)	deleterious(0.02)	neutral(0.383)	NULL
TFRC	7037	genome.wustl.edu	37	3	195778840	195778840	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128148.1	-1	validated	p.D752	1.000	272	0%	187	15.5%	42	21.4%	-	-	-	HMMPfam_TFR_dimer,superfamily_Transferrin receptor ectodomain C-terminal domain
TFRC	7037	genome.wustl.edu	37	3	195800807	195800807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128148.1	-1	validated	p.T143I	0.016	205	0%	145	19.3%	24	45.8%	benign(0.009)	deleterious(0.04)	neutral(0.349)	superfamily_Zn-dependent exopeptidases
ZDHHC19	131540	genome.wustl.edu	37	3	195935287	195935287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039617.1	-1	validated	p.L185M	0.002	234	0%	226	22.6%	0	-	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	NULL
UBXN7	26043	genome.wustl.edu	37	3	196083703	196083703	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015562.1	-1	validated	p.H441	0.800	413	0%	174	21.8%	4	75%	-	-	-	HMMPfam_UBX,HMMSmart_SM00166,superfamily_Ubiquitin-like
FBXO45	200933	genome.wustl.edu	37	3	196311117	196311117	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105573.1	+1	validated	p.Y263*	0.998	509	0%	352	16.2%	4	50%	-	-	-	HMMPfam_SPRY,HMMSmart_SPRY
LRRC33	375387	genome.wustl.edu	37	3	196381459	196381459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198565.1	+1	provisional	p.V17M	0.022	237	0%	251	21.9%	3	0%	possibly_damaging(0.437)	tolerated(0.05)	deleterious(0.488)	NULL
LRRC33	375387	genome.wustl.edu	37	3	196387809	196387809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198565.1	+1	provisional	p.D432G	0.999	108	0%	88	17%	14	0%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	superfamily_SSF52058
SENP5	205564	genome.wustl.edu	37	3	196612859	196612859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152699.4	+1	validated	p.Q269H	1.000	87	0%	59	23.7%	1	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SENP5	205564	genome.wustl.edu	37	3	196626836	196626836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152699.4	+1	validated	p.R554I	0.989	255	0%	129	19.4%	6	0%	possibly_damaging(0.78)	deleterious(0.01)	deleterious(0.697)	superfamily_Cysteine proteinases
PIGZ	80235	genome.wustl.edu	37	3	196674559	196674559	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025163.2	-1	reviewed	p.C403	0.042	144	0%	106	23.6%	5	60%	-	-	-	HMMPfam_Glyco_transf_22
PIGZ	80235	genome.wustl.edu	37	3	196674708	196674708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025163.2	-1	reviewed	p.L354M	0.000	148	0%	84	25%	9	33.3%	benign(0.267)	tolerated(0.25)	neutral(0.065)	HMMPfam_Glyco_transf_22
MFI2	4241	genome.wustl.edu	37	3	196743977	196743977	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005929.4	-1	reviewed	p.G299	1.000	24	0%	15	26.7%	6	66.6%	-	-	-	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
KIAA0226	9711	genome.wustl.edu	37	3	197403774	197403774	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000413360	-1	known	p.P838T	1.000	130	0%	139	24.5%	3	0%	-	-	-	NULL
KIAA0226	9711	genome.wustl.edu	37	3	197422755	197422755	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000415452	-1	known	p.A244V	1.000	306	0%	123	29.3%	6	33.3%	-	-	-	NULL
FYTTD1	84248	genome.wustl.edu	37	3	197508703	197508703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032288.6	+1	validated	p.R294W	1.000	117	0%	100	22%	36	41.6%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_FYTT
LMLN	89782	genome.wustl.edu	37	3	197710884	197710884	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136049.2	+1	reviewed	p.L267	1.000	421	0%	284	23.9%	1	100%	-	-	-	"HMMPfam_Peptidase_M8,superfamily_Metalloproteases (""zincins"") catalytic domain"
ZNF721	170960	genome.wustl.edu	37	4	435492	435492	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133474.2	-1	validated	p.Q922*	0.096	268	0%	141	19.9%	5	60%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF721	170960	genome.wustl.edu	37	4	435975	435975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133474.2	-1	validated	p.V761L	0.050	189	0%	99	17.2%	6	16.6%	benign(0.222)	tolerated(0.08)	neutral(0.322)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF721	170960	genome.wustl.edu	37	4	436113	436113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133474.2	-1	validated	p.H715Y	0.478	326	0%	152	20.4%	5	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF721	170960	genome.wustl.edu	37	4	437956	437956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133474.2	-1	validated	p.K100N	0.000	439	0.2%	173	23.1%	0	-	benign(0.021)	tolerated(0.13)	neutral(0.254)	superfamily_C2H2 and C2HC zinc fingers
MFSD7	84179	genome.wustl.edu	37	4	679887	679887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032219.2	-1	provisional	p.A167T	0.540	46	0%	59	23.7%	6	0%	benign(0.395)	tolerated(0.07)	neutral(0.446)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
PCGF3	10336	genome.wustl.edu	37	4	728734	728734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006315.4	+1	reviewed	p.L42M	1.000	67	0%	100	13%	16	50%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box
PCGF3	10336	genome.wustl.edu	37	4	755105	755105	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006315.4	+1	reviewed	p.R167	0.622	96	0%	101	15.8%	22	40.9%	-	-	-	NULL
GAK	2580	genome.wustl.edu	37	4	862438	862438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005255.2	-1	validated	p.A762T	0.874	18	0%	54	27.8%	42	45.2%	probably_damaging(0.992)	tolerated(0.18)	deleterious(0.504)	NULL
GAK	2580	genome.wustl.edu	37	4	884341	884341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005255.2	-1	validated	p.A354T	0.000	23	0%	27	25.9%	8	0%	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
GAK	2580	genome.wustl.edu	37	4	890301	890301	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005255.2	-1	validated	p.E230*	1.000	240	0%	312	20.5%	19	15.7%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
TMEM175	84286	genome.wustl.edu	37	4	945496	945496	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032326.2	+1	provisional	p.L123	1.000	162	0%	259	24.3%	62	29%	-	-	-	HMMPfam_DUF1211
TMEM175	84286	genome.wustl.edu	37	4	949225	949225	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000505148	+1	known	p.P57S	0.993	196	0%	176	10.2%	65	21.5%	-	-	-	NULL
SLC26A1	10861	genome.wustl.edu	37	4	973201	973201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134425.1	-1	reviewed	p.S223Y	0.049	358	0%	483	21.7%	4	25%	possibly_damaging(0.952)	-	-	NULL
FGFRL1	53834	genome.wustl.edu	37	4	1017640	1017640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004356.2	+1	reviewed	p.R157C	1.000	16	0%	12	58.3%	12	58.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_I-set,superfamily_SSF48726
FAM53A	152877	genome.wustl.edu	37	4	1643123	1643123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013622.3	-1	validated	p.R365H	0.003	104	0%	94	17%	4	50%	benign(0.002)	tolerated(0.23)	neutral(0.042)	NULL
TACC3	10460	genome.wustl.edu	37	4	1725498	1725498	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006342.1	+1	reviewed	p.I69S	0.018	157	0%	200	23%	48	37.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TACC3	10460	genome.wustl.edu	37	4	1729758	1729758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006342.1	+1	reviewed	p.S210F	0.000	42	0%	50	38%	57	43.8%	possibly_damaging(0.819)	deleterious(0.04)	deleterious(0.658)	NULL
TACC3	10460	genome.wustl.edu	37	4	1746487	1746487	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006342.1	+1	reviewed	p.A793	0.000	30	0%	25	24%	219	44.2%	-	-	-	HMMPfam_TACC
FGFR3	2261	genome.wustl.edu	37	4	1804671	1804671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000340107	+1	known	p.V321M	1.000	22	0%	24	29.2%	0	-	benign(0.058)	tolerated(0.32)	neutral(0.028)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
FGFR3	2261	genome.wustl.edu	37	4	1807311	1807311	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000142.4	+1	reviewed	p.S520	0.059	70	0%	42	14.3%	2	100%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
FGFR3	2261	genome.wustl.edu	37	4	1808652	1808652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000481110	+1	known	p.V733I	0.037	9	0.000	14	0.357	6	33.3%	unknown(0)	deleterious(0)	-	HMMSmart_SM00220
POLN	353497	genome.wustl.edu	37	4	2181051	2181051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181808.2	-1	validated	p.S388F	0.661	322	0%	239	19.2%	1	0%	possibly_damaging(0.848)	deleterious(0.04)	deleterious(0.674)	superfamily_Ribonuclease H-like
POLN	353497	genome.wustl.edu	37	4	2200274	2200274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181808.2	-1	validated	p.Q295H	0.115	113	0%	44	22.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Ribonuclease H-like
TNIP2	79155	genome.wustl.edu	37	4	2746219	2746219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024309.3	-1	validated	p.K307N	1.000	255	0%	257	18.7%	73	35.6%	possibly_damaging(0.952)	tolerated(0.5)	neutral(0.406)	NULL
ADD1	118	genome.wustl.edu	37	4	2916675	2916675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014189.2	+1	reviewed	p.S588N	1.000	211	0%	157	21%	80	35%	benign(0.084)	tolerated(0.16)	neutral(0.066)	NULL
NOP14	8602	genome.wustl.edu	37	4	2940652	2940652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003703.1	-1	validated	p.A827V	0.954	292	0.3%	462	23.8%	60	41.6%	benign(0.389)	tolerated(0.23)	neutral(0.166)	HMMPfam_Nop14
HTT	3064	genome.wustl.edu	37	4	3107155	3107155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002111.6	+1	reviewed	p.Q200H	1.000	343	0%	277	22.4%	2	50%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	superfamily_ARM repeat
HTT	3064	genome.wustl.edu	37	4	3131704	3131704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002111.6	+1	reviewed	p.Q599H	0.998	149	0.7%	78	33.3%	2	50%	possibly_damaging(0.583)	tolerated(0.07)	deleterious(0.520)	superfamily_ARM repeat
HTT	3064	genome.wustl.edu	37	4	3174100	3174100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002111.6	+1	reviewed	p.M1306I	0.606	448	0%	234	25.6%	1	100%	benign(0.002)	deleterious(0.01)	neutral(0.406)	superfamily_ARM repeat
RGS12	6002	genome.wustl.edu	37	4	3416529	3416529	+	Silent	SNP	C	C	A	rs112156709		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198229.2	+1	reviewed	p.A747	1.000	315	0%	475	22.7%	4	50%	-	-	-	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
RGS12	6002	genome.wustl.edu	37	4	3417745	3417745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198229.2	+1	reviewed	p.C775Y	1.000	199	0%	277	19.1%	7	0%	benign(0.253)	deleterious(0.01)	neutral(0.432)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
RGS12	6002	genome.wustl.edu	37	4	3424132	3424132	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198229.2	+1	reviewed	p.E956	0.039	47	0%	51	35.3%	12	58.3%	-	-	-	NULL
RGS12	6002	genome.wustl.edu	37	4	3424244	3424244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198229.2	+1	reviewed	p.R994W	1.000	42	0%	63	19%	9	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_RBD,HMMSmart_SM00455,superfamily_Ubiquitin-like
RGS12	6002	genome.wustl.edu	37	4	3430417	3430417	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198229.2	+1	reviewed	p.I1182L	1.000	114	0%	170	18.8%	6	50%	benign(0.021)	tolerated(0.57)	neutral(0.007)	NULL
DOK7	285489	genome.wustl.edu	37	4	3487292	3487292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173660.4	+1	reviewed	p.A187T	0.927	38	0%	73	20.5%	39	33.3%	benign(0.164)	deleterious(0)	neutral(0.460)	superfamily_PH domain-like
ZBTB49	166793	genome.wustl.edu	37	4	4317547	4317547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145291.3	+1	validated	p.F491L	1.000	332	0%	191	17.8%	2	50%	benign(0.044)	tolerated(0.61)	neutral(0.007)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZBTB49	166793	genome.wustl.edu	37	4	4322727	4322727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145291.3	+1	validated	p.P661H	0.023	71	0%	55	16.4%	3	0%	benign(0.026)	tolerated(0.8)	neutral(0.002)	NULL
STX18	53407	genome.wustl.edu	37	4	4422604	4422604	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016930.2	-1	validated	p.E300V	1.000	531	0%	381	22%	484	50.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CRMP1	1400	genome.wustl.edu	37	4	5837779	5837779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014809.1	-1	reviewed	p.A496T	0.997	119	0%	115	18.3%	4	0%	benign(0.166)	deleterious(0.01)	neutral(0.421)	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
CRMP1	1400	genome.wustl.edu	37	4	5837811	5837811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014809.1	-1	reviewed	p.A485V	1.000	108	0%	83	26.5%	7	14.2%	benign(0)	tolerated(0.67)	neutral(0.003)	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
CRMP1	1400	genome.wustl.edu	37	4	5844832	5844832	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014809.1	-1	reviewed	p.S340	1.000	225	0%	189	16.9%	3	0%	-	-	-	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
CRMP1	1400	genome.wustl.edu	37	4	5853195	5853195	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014809.1	-1	reviewed	p.G274	0.980	278	0.4%	114	21.1%	2	0%	-	-	-	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
JAKMIP1	152789	genome.wustl.edu	37	4	6055751	6055751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144720.3	-1	validated	p.L611R	1.000	453	0.2%	393	16.3%	8	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
JAKMIP1	152789	genome.wustl.edu	37	4	6062165	6062165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099433.1	-1	validated	p.V544I	0.737	246	0%	189	19%	17	0%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
JAKMIP1	152789	genome.wustl.edu	37	4	6081955	6081955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099433.1	-1	validated	p.E396K	1.000	93	0%	45	24.4%	5	0%	probably_damaging(0.99)	tolerated(0.23)	deleterious(0.483)	NULL
WFS1	7466	genome.wustl.edu	37	4	6303100	6303100	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006005.3	+1	reviewed	p.G526	1.000	57	0%	44	11.4%	34	8.8%	-	-	-	NULL
S100P	6286	genome.wustl.edu	37	4	6695679	6695679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005980.2	+1	reviewed	p.A7V	1.000	54	0%	29	27.6%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_S_100,superfamily_SSF47473
TBC1D14	57533	genome.wustl.edu	37	4	6925709	6925709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113361.1	+1	validated	p.P198L	0.631	71	0%	78	21.8%	7	28.5%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
AFAP1	60312	genome.wustl.edu	37	4	7774651	7774651	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134647.1	-1	reviewed	p.E717*	1.000	82	0%	74	24.3%	5	40%	-	-	-	NULL
ABLIM2	84448	genome.wustl.edu	37	4	7986603	7986603	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130083.1	-1	validated	p.P566	0.995	146	0%	175	24.6%	0	-	-	-	-	superfamily_VHP Villin headpiece domain
ABLIM2	84448	genome.wustl.edu	37	4	8037938	8037938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130083.1	-1	validated	p.D329N	1.000	287	0.3%	209	23.4%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SH3TC1	54436	genome.wustl.edu	37	4	8216220	8216220	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018986.3	+1	validated	p.L132	1.000	235	0%	258	24%	2	100%	-	-	-	NULL
SH3TC1	54436	genome.wustl.edu	37	4	8217962	8217962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000382516	+1	known	p.T2M	0.053	127	0%	88	12.5%	4	50%	unknown(0)	-	-	NULL
CPZ	8532	genome.wustl.edu	37	4	8607763	8607763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014447.1	+1	reviewed	p.A253T	0.999	140	0%	177	13.6%	16	0%	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases
LOC100288554	100288554	genome.wustl.edu	37	4	9431280	9431280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342446.1	+1	model	p.C80Y	0.670	753	0%	471	20.4%	0	-	-	-	-	HMMPfam_Defensin_beta,superfamily_Defensin-like
DRD5	1816	genome.wustl.edu	37	4	9783954	9783954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000798.4	+1	reviewed	p.A101T	0.983	79	0%	111	23.4%	0	-	benign(0.036)	tolerated(1)	neutral(0.002)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DRD5	1816	genome.wustl.edu	37	4	9784325	9784325	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000798.4	+1	reviewed	p.T224	0.989	83	1.2%	79	24.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SLC2A9	56606	genome.wustl.edu	37	4	9828145	9828145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020041.2	-1	reviewed	p.P500H	1.000	370	0%	122	13.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
SLC2A9	56606	genome.wustl.edu	37	4	10022921	10022921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020041.2	-1	reviewed	p.G45C	0.000	394	0%	308	23.4%	0	-	benign(0.233)	deleterious(0.01)	neutral(0.429)	superfamily_MFS general substrate transporter
WDR1	9948	genome.wustl.edu	37	4	10090252	10090252	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000443592	-1	known	e4-2	0.000	102	0%	70	20%	0	-	-	-	-	-
WDR1	9948	genome.wustl.edu	37	4	10100688	10100688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017491.3	-1	reviewed	p.A102V	0.999	150	0%	156	17.3%	177	11.8%	benign(0.004)	tolerated(0.1)	neutral(0.286)	HMMSmart_SM00320,superfamily_WD40 repeat-like
BOD1L	259282	genome.wustl.edu	37	4	13582792	13582792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_148894.2	-1	validated	p.P2878S	1.000	338	0%	195	21%	24	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AT_hook,HMMSmart_AT_hook
BOD1L	259282	genome.wustl.edu	37	4	13605777	13605777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_148894.2	-1	validated	p.T916I	1.000	539	0%	375	12.8%	3	0%	benign(0.013)	tolerated(0.07)	neutral(0.320)	superfamily_SSF81995
BOD1L	259282	genome.wustl.edu	37	4	13606217	13606217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_148894.2	-1	validated	p.E769D	0.346	609	0%	435	19.5%	1	100%	benign(0.003)	tolerated(0.82)	neutral(0.001)	superfamily_SSF81995
CPEB2	132864	genome.wustl.edu	37	4	15054200	15054200	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182485.2	+1	reviewed	p.I343S	1.000	282	0%	216	26.4%	1	100%	possibly_damaging(0.827)	deleterious(0)	deleterious(0.758)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
CC2D2A	57545	genome.wustl.edu	37	4	15542572	15542572	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080522.2	+1	reviewed	p.R706*	1.000	194	0%	108	24.1%	0	-	-	-	-	NULL
FBXL5	26234	genome.wustl.edu	37	4	15627271	15627271	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012161.2	-1	reviewed	p.E485A	0.998	415	0%	265	10.2%	81	11.1%	benign(0.117)	tolerated(0.7)	neutral(0.011)	superfamily_RNI-like
FBXL5	26234	genome.wustl.edu	37	4	15640237	15640237	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000513163	-1	known	p.L80F	1.000	362	0%	201	21.9%	20	40%	-	-	-	NULL
BST1	683	genome.wustl.edu	37	4	15707183	15707183	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004334.2	+1	validated	p.L78	1.000	282	0%	404	20.5%	1	0%	-	-	-	HMMPfam_Rib_hydrolayse,superfamily_ADP ribosyl cyclase-like
CD38	952	genome.wustl.edu	37	4	15850217	15850217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001775.2	+1	validated	p.E299K	0.000	428	0%	314	20.7%	91	25.2%	benign(0)	tolerated(0.6)	neutral(0.004)	superfamily_ADP ribosyl cyclase-like
FGFBP2	83888	genome.wustl.edu	37	4	15964249	15964249	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031950.3	-1	reviewed	p.S168	0.000	144	0%	102	25.5%	1	0%	-	-	-	HMMPfam_FGF-BP1
PROM1	8842	genome.wustl.edu	37	4	15987451	15987451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006017.2	-1	reviewed	p.E738K	1.000	280	0%	120	21.7%	63	31.7%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Prominin
PROM1	8842	genome.wustl.edu	37	4	16077489	16077489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006017.2	-1	reviewed	p.C14Y	0.000	150	0%	122	20.5%	13	61.5%	unknown(0)	deleterious(0)	-	HMMPfam_Prominin
TAPT1	202018	genome.wustl.edu	37	4	16188159	16188159	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000513782	-1	known	p.R98*	0.732	309	0%	233	18.9%	3	66.6%	-	-	-	HMMPfam_DUF747
LAP3	51056	genome.wustl.edu	37	4	17609138	17609138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015907.2	+1	validated	p.R496W	0.159	296	0.7%	116	20.7%	450	38.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Peptidase_M17,superfamily_Zn-dependent exopeptidases
DCAF16	54876	genome.wustl.edu	37	4	17805504	17805504	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017741.3	-1	provisional	p.V87	0.990	140	0%	133	30.1%	19	31.5%	-	-	-	NULL
NCAPG	64151	genome.wustl.edu	37	4	17814564	17814564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022346.3	+1	validated	p.V114L	1.000	298	0%	315	21.9%	4	100%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_ARM-type_fold
LCORL	254251	genome.wustl.edu	37	4	17885872	17885872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000382226	-1	known	p.P427L	1.000	323	0%	98	13.3%	1	0%	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
LCORL	254251	genome.wustl.edu	37	4	17886186	17886186	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000382226	-1	known	p.S322	1.000	289	0%	81	27.2%	0	-	-	-	-	NULL
SLIT2	9353	genome.wustl.edu	37	4	20530587	20530587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004787.1	+1	provisional	p.R493Q	1.000	226	0%	147	18.4%	3	100%	probably_damaging(0.994)	tolerated(0.17)	deleterious(0.511)	NULL
SLIT2	9353	genome.wustl.edu	37	4	20550171	20550171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004787.1	+1	provisional	p.Q802H	1.000	250	0%	71	28.2%	4	25%	benign(0.009)	tolerated(0.18)	neutral(0.057)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
GPR125	166647	genome.wustl.edu	37	4	22414948	22414948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145290.2	-1	validated	p.A697S	1.000	247	0%	69	15.9%	6	33.3%	benign(0)	tolerated(0.87)	neutral(0.001)	HMMPfam_GPS,HMMSmart_SM00303
GPR125	166647	genome.wustl.edu	37	4	22444479	22444479	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145290.2	-1	validated	p.P238	0.902	244	0%	100	15%	6	50%	-	-	-	superfamily_L domain-like
DHX15	1665	genome.wustl.edu	37	4	24534618	24534618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001358.2	-1	reviewed	p.A657T	1.000	185	0.5%	138	24.6%	187	36.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CCDC149	91050	genome.wustl.edu	37	4	24878171	24878171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130726.1	-1	validated	p.Y71C	1.000	229	0%	91	23.1%	2	50%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_DUF2353
LGI2	55203	genome.wustl.edu	37	4	25005228	25005228	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018176.3	-1	validated	p.E495*	1.000	270	0%	96	31.2%	2	0%	-	-	-	NULL
LGI2	55203	genome.wustl.edu	37	4	25019660	25019660	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018176.3	-1	validated	p.E202D	0.650	348	0%	202	17.8%	1	0%	benign(0)	tolerated(0.58)	neutral(0.005)	HMMSmart_SM00082,superfamily_L domain-like
SEPSECS	51091	genome.wustl.edu	37	4	25128919	25128919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016955.3	-1	validated	p.L284M	1.000	519	0%	129	23.3%	9	44.4%	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	HMMPfam_SLA_LP_auto_ag,superfamily_PLP-dependent transferases
ZCCHC4	29063	genome.wustl.edu	37	4	25335046	25335046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024936.2	+1	validated	p.G191R	1.000	275	0%	102	28.4%	4	100%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
SLC34A2	10568	genome.wustl.edu	37	4	25669570	25669570	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006424.2	+1	reviewed	p.I198F	0.997	318	0%	213	19.2%	58	43.1%	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	HMMPfam_Na_Pi_cotrans
SEL1L3	23231	genome.wustl.edu	37	4	25783928	25783928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015187.3	-1	validated	p.A798V	0.996	467	0%	142	27.5%	38	23.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like
TBC1D19	55296	genome.wustl.edu	37	4	26668017	26668017	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018317.2	+1	validated	p.Q218	1.000	397	0%	133	12.8%	9	11.1%	-	-	-	NULL
STIM2	57620	genome.wustl.edu	37	4	27000970	27000970	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020860.3	+1	reviewed	e5+1	1.000	176	0%	51	21.6%	0	-	-	-	-	-
ARAP2	116984	genome.wustl.edu	37	4	36069784	36069784	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015230.2	-1	reviewed	p.D1620	0.085	217	0%	77	23.4%	6	16.6%	-	-	-	NULL
ARAP2	116984	genome.wustl.edu	37	4	36168670	36168670	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015230.2	-1	reviewed	e9-1	1.000	184	0%	133	22.6%	0	-	-	-	-	-
ARAP2	116984	genome.wustl.edu	37	4	36214942	36214942	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015230.2	-1	reviewed	e3-1	1.000	158	0%	81	19.8%	0	-	-	-	-	-
ARAP2	116984	genome.wustl.edu	37	4	36230796	36230796	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015230.2	-1	reviewed	p.E105*	0.000	244	0%	146	20.5%	4	25%	-	-	-	NULL
DTHD1	401124	genome.wustl.edu	37	4	36345317	36345317	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136536.3	+1	validated	p.D574	0.979	116	0%	36	19.4%	0	-	-	-	-	HMMPfam_Death,superfamily_DEATH domain
KIAA1239	57495	genome.wustl.edu	37	4	37432305	37432305	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144990.1	+1	validated	p.L157	0.922	332	0%	76	18.4%	0	-	-	-	-	NULL
TBC1D1	23216	genome.wustl.edu	37	4	38138888	38138888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015173.2	+1	validated	p.R1147W	0.324	26	0%	22	40.9%	114	50.8%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
TLR1	7096	genome.wustl.edu	37	4	38798140	38798140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003263.3	-1	reviewed	p.N771K	0.978	286	0%	146	19.9%	22	9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
TLR1	7096	genome.wustl.edu	37	4	38798541	38798541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003263.3	-1	reviewed	p.H638Y	1.000	246	0%	187	24.1%	7	14.2%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
ENSG00000248412	0	genome.wustl.edu	37	4	38828566	38828566	+	RNA	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000508542	+1	novel	NULL	0.000	61	0%	73	16.4%	1	0%	-	-	-	-
TLR6	10333	genome.wustl.edu	37	4	38830588	38830588	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006068.3	-1	validated	p.L169	0.285	97	0%	131	25.2%	0	-	-	-	-	superfamily_SSF52058
FAM114A1	92689	genome.wustl.edu	37	4	38945103	38945103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138389.2	+1	validated	p.Q539H	1.000	194	0%	89	19.1%	9	11.1%	benign(0.013)	tolerated(0.08)	neutral(0.300)	NULL
TMEM156	80008	genome.wustl.edu	37	4	38988018	38988018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024943.1	-1	provisional	p.S254F	0.055	342	0%	76	13.2%	1	0%	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	NULL
TMEM156	80008	genome.wustl.edu	37	4	38990512	38990512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024943.1	-1	provisional	p.R233H	0.652	428	0.2%	188	14.9%	1	0%	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
RFC1	5981	genome.wustl.edu	37	4	39293387	39293387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002913.3	-1	reviewed	p.V1014L	0.224	404	0%	124	20.2%	48	35.4%	benign(0.001)	tolerated(0.4)	neutral(0.016)	HMMPfam_RFC1
RFC1	5981	genome.wustl.edu	37	4	39314460	39314460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002913.3	-1	reviewed	p.R432H	1.000	410	0%	223	26.9%	17	41.1%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT
RFC1	5981	genome.wustl.edu	37	4	39328214	39328214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002913.3	-1	reviewed	p.A204V	1.000	495	0%	228	20.2%	5	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
KLB	152831	genome.wustl.edu	37	4	39436051	39436051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175737.3	+1	validated	p.F349L	0.000	287	0%	128	21.9%	0	-	benign(0)	tolerated(0.85)	neutral(0.001)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
N4BP2	55728	genome.wustl.edu	37	4	40122924	40122924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018177.3	+1	reviewed	p.A1065S	0.998	247	0%	126	24.6%	0	-	benign(0.024)	deleterious(0.04)	neutral(0.350)	NULL
N4BP2	55728	genome.wustl.edu	37	4	40124821	40124821	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018177.3	+1	reviewed	p.E1425*	1.000	529	0%	310	24.2%	1	100%	-	-	-	NULL
N4BP2	55728	genome.wustl.edu	37	4	40146308	40146308	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000513269	+1	known	p.L1307I	1.000	318	0.6%	452	24.6%	4	25%	-	-	-	HMMPfam_DUF1771
CHRNA9	55584	genome.wustl.edu	37	4	40356292	40356292	+	Missense_Mutation	SNP	C	C	T	rs55962300	byCluster;byFrequency	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017581.2	+1	reviewed	p.R399C	0.026	176	0.6%	50	30%	0	-	benign(0.003)	tolerated(0.19)	neutral(0.050)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
RBM47	54502	genome.wustl.edu	37	4	40440443	40440443	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098634.1	-1	validated	p.G156	0.035	21	4.8%	29	17.2%	25	48%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NSUN7	79730	genome.wustl.edu	37	4	40778234	40778234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024677.4	+1	validated	p.D332N	0.999	215	0%	183	18%	13	53.8%	benign(0.157)	tolerated(0.56)	neutral(0.021)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
APBB2	323	genome.wustl.edu	37	4	40818132	40818132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173075.4	-1	reviewed	p.R730C	1.000	655	0%	201	17.4%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LIMCH1	22998	genome.wustl.edu	37	4	41648885	41648885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014988.2	+1	validated	p.S547F	1.000	156	0%	173	10.4%	9	22.2%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
BEND4	389206	genome.wustl.edu	37	4	42127653	42127653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207406.3	-1	validated	p.L365M	0.996	516	0%	356	23.3%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
ATP8A1	10396	genome.wustl.edu	37	4	42415026	42415026	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006095.2	-1	reviewed	p.G1134	0.991	285	0%	137	23.4%	2	0%	-	-	-	NULL
KCTD8	386617	genome.wustl.edu	37	4	44176835	44176835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198353.2	-1	validated	p.S465Y	0.993	282	0%	371	18.6%	0	-	possibly_damaging(0.69)	deleterious(0)	deleterious(0.692)	NULL
GUF1	60558	genome.wustl.edu	37	4	44684423	44684423	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021927.2	+1	validated	p.N194H	1.000	236	0%	305	19.7%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU,superfamily_SSF52540
GUF1	60558	genome.wustl.edu	37	4	44688041	44688041	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021927.2	+1	validated	e7+1	1.000	550	0%	530	20%	0	-	-	-	-	-
GNPDA2	132789	genome.wustl.edu	37	4	44713035	44713035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138335.1	-1	provisional	p.D177Y	1.000	298	0%	116	19%	14	35.7%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_Glucosamine_iso,superfamily_NagB/RpiA/CoA transferase-like
GABRG1	2565	genome.wustl.edu	37	4	46067526	46067526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173536.3	-1	reviewed	p.L133I	0.997	246	0%	169	20.1%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRA2	2555	genome.wustl.edu	37	4	46388147	46388147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000807.2	-1	reviewed	p.R44I	1.000	249	0%	314	19.7%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
COX7B2	170712	genome.wustl.edu	37	4	46736993	46736993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130902.2	-1	validated	p.V73I	0.806	265	0%	155	20.6%	0	-	possibly_damaging(0.653)	tolerated(0.26)	neutral(0.264)	HMMPfam_COX7B,superfamily_SSF81423
COX7B2	170712	genome.wustl.edu	37	4	46737011	46737011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130902.2	-1	validated	p.L67I	0.705	293	0%	185	25.4%	0	-	benign(0.327)	tolerated(0.07)	neutral(0.421)	HMMPfam_COX7B,superfamily_SSF81423
GABRB1	2560	genome.wustl.edu	37	4	47034482	47034482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000812.3	+1	reviewed	p.M74T	1.000	34	0%	50	34%	0	-	benign(0.004)	tolerated(0.22)	neutral(0.042)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
ATP10D	57205	genome.wustl.edu	37	4	47559685	47559685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020453.3	+1	validated	p.R610K	0.088	78	0%	49	16.3%	1	0%	benign(0.024)	tolerated(0.97)	neutral(0.001)	superfamily_HAD-like
CORIN	10699	genome.wustl.edu	37	4	47808953	47808953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006587.2	-1	reviewed	p.V59I	0.000	318	0%	137	22.6%	0	-	possibly_damaging(0.539)	tolerated(1)	neutral(0.182)	NULL
NFXL1	152518	genome.wustl.edu	37	4	47905269	47905269	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152995.4	-1	validated	p.Q196	0.997	290	0%	160	11.3%	4	50%	-	-	-	PatternScan_ZF_PHD_1,superfamily_RING/U-box
CNGA1	1259	genome.wustl.edu	37	4	47939228	47939228	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142564.1	-1	reviewed	p.K497I	1.000	234	0%	82	18.3%	0	-	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	superfamily_cAMP-binding domain-like
NIPAL1	152519	genome.wustl.edu	37	4	48037903	48037903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207330.1	+1	provisional	p.S316F	0.998	424	0%	211	21.3%	0	-	possibly_damaging(0.789)	deleterious(0)	deleterious(0.740)	HMMPfam_DUF803
SLAIN2	57606	genome.wustl.edu	37	4	48381793	48381793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020846.1	+1	validated	p.D264Y	1.000	350	0%	307	20.5%	11	72.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FRYL	285527	genome.wustl.edu	37	4	48507569	48507569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015030.1	-1	validated	p.A2820T	1.000	291	0%	106	17.9%	11	45.4%	possibly_damaging(0.659)	tolerated(0.58)	neutral(0.238)	superfamily_ARM repeat
FRYL	285527	genome.wustl.edu	37	4	48591794	48591794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015030.1	-1	validated	p.Q536H	1.000	379	0%	177	25.4%	0	-	benign(0.208)	tolerated(0.08)	neutral(0.320)	superfamily_ARM repeat
CWH43	80157	genome.wustl.edu	37	4	49005952	49005952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025087.2	+1	validated	p.A335T	1.000	226	0%	101	23.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRC66	339977	genome.wustl.edu	37	4	52861616	52861616	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001024611.1	-1	provisional	p.A524	0.000	89	0%	37	27%	0	-	-	-	-	NULL
SGCB	6443	genome.wustl.edu	37	4	52894953	52894953	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000232.4	-1	reviewed	p.E188	1.000	198	0%	265	22.6%	34	32.3%	-	-	-	HMMPfam_Sarcoglycan_1
USP46	64854	genome.wustl.edu	37	4	53463866	53463866	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022832.3	-1	validated	p.T347	0.121	247	0.4%	127	20.5%	6	83.3%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
SCFD2	152579	genome.wustl.edu	37	4	53773665	53773665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152540.3	-1	validated	p.L601F	1.000	341	0%	131	20.6%	39	38.4%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	superfamily_Sec1/munc18-like (SM) proteins
SCFD2	152579	genome.wustl.edu	37	4	54231781	54231781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152540.3	-1	validated	p.A110T	1.000	80	0%	61	21.3%	15	33.3%	benign(0.167)	tolerated(1)	neutral(0.015)	NULL
LNX1	84708	genome.wustl.edu	37	4	54364894	54364894	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001126328.1	-1	reviewed	p.L298	0.177	183	0%	72	31.9%	1	100%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
LNX1	84708	genome.wustl.edu	37	4	54374223	54374223	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001126328.1	-1	reviewed	p.Y184	1.000	55	0%	14	28.6%	1	0%	-	-	-	NULL
LNX1	84708	genome.wustl.edu	37	4	54439998	54439998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001126328.1	-1	reviewed	p.H58Y	1.000	108	0%	64	18.8%	1	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box
PDGFRA	5156	genome.wustl.edu	37	4	55127488	55127488	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006206.4	+1	reviewed	p.A92	0.006	159	0%	74	23%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
KIT	3815	genome.wustl.edu	37	4	55597513	55597513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000222.2	+1	reviewed	p.Y721H	1.000	277	0%	53	28.3%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
KIT	3815	genome.wustl.edu	37	4	55598117	55598117	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000222.2	+1	reviewed	p.F772V	1.000	162	0%	56	23.2%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
KDR	3791	genome.wustl.edu	37	4	55970834	55970834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002253.2	-1	reviewed	p.V655M	0.985	159	0%	47	23.4%	5	0%	possibly_damaging(0.682)	tolerated(0.22)	neutral(0.285)	HMMSmart_IG,superfamily_SSF48726
NMU	10874	genome.wustl.edu	37	4	56471490	56471490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006681.2	-1	validated	p.Q129H	1.000	236	0%	182	20.3%	7	42.8%	possibly_damaging(0.892)	tolerated(0.1)	deleterious(0.638)	NULL
EXOC1	55763	genome.wustl.edu	37	4	56768532	56768532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001024924.1	+1	reviewed	p.A787D	1.000	278	0%	94	21.3%	36	41.6%	possibly_damaging(0.676)	tolerated(0.11)	deleterious(0.512)	HMMPfam_Sec3
CEP135	9662	genome.wustl.edu	37	4	56884001	56884001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025009.3	+1	validated	p.S997L	0.983	122	0%	38	23.7%	7	42.8%	possibly_damaging(0.659)	tolerated(0.31)	neutral(0.260)	NULL
KIAA1211	57482	genome.wustl.edu	37	4	57182337	57182337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020722.1	+1	validated	p.R890H	0.000	63	0%	54	14.8%	0	-	benign(0.06)	tolerated(0.07)	neutral(0.323)	NULL
KIAA1211	57482	genome.wustl.edu	37	4	57182706	57182706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020722.1	+1	validated	p.R1013H	0.000	45	0%	58	31%	1	0%	probably_damaging(0.988)	tolerated(0.12)	deleterious(0.698)	NULL
PPAT	5471	genome.wustl.edu	37	4	57261558	57261558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002703.3	-1	reviewed	p.A505V	1.000	777	0%	462	20.1%	13	53.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PRTase-like
PPAT	5471	genome.wustl.edu	37	4	57269319	57269319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002703.3	-1	reviewed	p.A183V	1.000	353	0%	234	17.5%	17	29.4%	possibly_damaging(0.439)	deleterious(0)	deleterious(0.588)	HMMPfam_GATase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
SRP72	6731	genome.wustl.edu	37	4	57340281	57340281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006947.3	+1	validated	p.S139Y	1.000	379	0%	291	26.1%	27	48.1%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SSF48452
REST	5978	genome.wustl.edu	37	4	57776812	57776812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005612.3	+1	reviewed	p.T3I	1.000	145	0%	196	35.2%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
REST	5978	genome.wustl.edu	37	4	57785958	57785958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005612.3	+1	reviewed	p.R302C	1.000	261	0%	229	21%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
REST	5978	genome.wustl.edu	37	4	57797317	57797317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005612.3	+1	reviewed	p.L765M	0.002	107	0%	49	24.5%	12	41.6%	possibly_damaging(0.531)	deleterious(0.03)	deleterious(0.543)	NULL
NOA1	84273	genome.wustl.edu	37	4	57834567	57834567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032313.2	-1	provisional	p.R544C	1.000	237	0%	222	21.6%	62	40.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POLR2B	5431	genome.wustl.edu	37	4	57889620	57889620	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000938.1	+1	reviewed	p.L880	1.000	314	0%	85	31.8%	99	45.4%	-	-	-	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR2B	5431	genome.wustl.edu	37	4	57889831	57889831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000938.1	+1	reviewed	p.R924C	1.000	154	0%	44	15.9%	116	43.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR2B	5431	genome.wustl.edu	37	4	57897126	57897126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000938.1	+1	reviewed	p.S1166I	1.000	507	0%	252	17.5%	150	48.6%	benign(0.127)	deleterious(0.02)	neutral(0.394)	HMMPfam_RNA_pol_Rpb2_7,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
LPHN3	23284	genome.wustl.edu	37	4	62542646	62542646	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015236.4	+1	reviewed	p.V124	1.000	417	0%	165	20%	0	-	-	-	-	NULL
LPHN3	23284	genome.wustl.edu	37	4	62935835	62935835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015236.4	+1	reviewed	p.L1207M	1.000	46	0%	29	13.8%	1	0%	benign(0.012)	deleterious(0)	neutral(0.445)	HMMPfam_Latrophilin
EPHA5	2044	genome.wustl.edu	37	4	66242749	66242749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004439.5	-1	reviewed	p.S608Y	1.000	146	0%	50	26%	0	-	possibly_damaging(0.449)	tolerated(1)	neutral(0.147)	NULL
EPHA5	2044	genome.wustl.edu	37	4	66280050	66280050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004439.5	-1	reviewed	p.G547C	1.000	311	0%	70	22.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CENPC1	1060	genome.wustl.edu	37	4	68338349	68338349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001812.2	-1	reviewed	p.L936I	1.000	232	0%	125	20%	17	17.6%	possibly_damaging(0.893)	tolerated(0.1)	deleterious(0.638)	superfamily_RmlC-like cupins,HMMPfam_Cupin_2
STAP1	26228	genome.wustl.edu	37	4	68441106	68441106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012108.2	+1	reviewed	p.V66I	0.902	413	0%	103	21.4%	1	0%	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
UBA6	55236	genome.wustl.edu	37	4	68514815	68514815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018227.5	-1	validated	p.T407A	1.000	219	0%	217	19.8%	5	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Activating enzymes of the ubiquitin-like proteins
TMPRSS11D	9407	genome.wustl.edu	37	4	68691452	68691452	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004262.2	-1	reviewed	p.Q365*	1.000	298	0%	102	21.6%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_SER
TMPRSS11D	9407	genome.wustl.edu	37	4	68719813	68719813	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004262.2	-1	reviewed	p.R74	0.000	264	0%	146	17.1%	0	-	-	-	-	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671
TMPRSS11A	339967	genome.wustl.edu	37	4	68812258	68812258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182606.3	-1	validated	p.L15M	0.350	91	0%	34	20.6%	0	-	possibly_damaging(0.828)	tolerated(0.2)	neutral(0.363)	NULL
TMPRSS11B	132724	genome.wustl.edu	37	4	69100239	69100239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182502.3	-1	validated	p.Q137H	0.009	243	0%	91	17.6%	0	-	benign(0.148)	deleterious(0.01)	neutral(0.419)	HMMPfam_SEA,superfamily_SEA domain
YTHDC1	91746	genome.wustl.edu	37	4	69202853	69202853	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031732.2	-1	validated	p.E259*	1.000	254	0%	139	10.8%	9	0%	-	-	-	NULL
YTHDC1	91746	genome.wustl.edu	37	4	69203096	69203096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031732.2	-1	validated	p.E178K	1.000	495	0%	198	14.1%	33	6%	probably_damaging(0.971)	tolerated(0.13)	deleterious(0.665)	NULL
UGT2B17	7367	genome.wustl.edu	37	4	69433501	69433501	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077.3	-1	reviewed	p.D234	0.108	85	0%	38	63.2%	3	66.6%	-	-	-	HMMPfam_UDPGT,superfamily_SSF53756
UGT2B15	7366	genome.wustl.edu	37	4	69535816	69535816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001076.2	-1	validated	p.R174Q	0.901	333	0%	113	16.8%	0	-	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B11	10720	genome.wustl.edu	37	4	69885701	69885701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000381096	-1	known	p.K134N	0.001	328	0%	85	18.8%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B11	10720	genome.wustl.edu	37	4	70070328	70070328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001073.1	-1	provisional	p.A377V	1.000	380	0%	59	11.9%	1	0%	benign(0.123)	deleterious(0)	neutral(0.455)	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_SSF53756
UGT2B28	54490	genome.wustl.edu	37	4	70148379	70148379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053039.1	+1	provisional	p.K290R	1.000	374	0%	79	20.3%	0	-	benign(0.162)	deleterious(0.05)	neutral(0.360)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B4	7363	genome.wustl.edu	37	4	70361460	70361460	+	Missense_Mutation	SNP	C	C	A	rs41299974	byCluster;by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021139.2	-1	validated	p.K40N	0.047	402	0%	85	14.1%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SULT1E1	6783	genome.wustl.edu	37	4	70715265	70715265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005420.2	-1	reviewed	p.R129Q	1.000	154	0%	96	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
CSN2	1447	genome.wustl.edu	37	4	70823382	70823382	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001891.2	-1	validated	p.Q95	0.000	340	0%	93	21.5%	0	-	-	-	-	NULL
AMBN	258	genome.wustl.edu	37	4	71469597	71469597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016519.4	+1	reviewed	p.A253T	0.993	238	0%	54	22.2%	0	-	benign(0.02)	tolerated(0.23)	neutral(0.043)	HMMPfam_Amelin,HMMSmart_SM00817
AMBN	258	genome.wustl.edu	37	4	71472423	71472423	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016519.4	+1	reviewed	p.D440	0.000	68	0%	27	29.6%	0	-	-	-	-	HMMPfam_Amelin,HMMSmart_SM00817
GRSF1	2926	genome.wustl.edu	37	4	71698864	71698864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002092.3	-1	reviewed	p.R214H	0.997	452	0.4%	341	23.8%	153	45%	benign(0.019)	deleterious(0)	neutral(0.446)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
DCK	1633	genome.wustl.edu	37	4	71888144	71888144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000788.2	+1	reviewed	p.E90K	1.000	299	0%	307	19.5%	26	19.2%	benign(0.001)	tolerated(0.75)	neutral(0.002)	superfamily_SSF52540
NPFFR2	10886	genome.wustl.edu	37	4	72897714	72897714	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004885.2	+1	reviewed	p.R32S	0.014	23	0%	20	30%	0	-	possibly_damaging(0.444)	-	-	NULL
ADAMTS3	9508	genome.wustl.edu	37	4	73184295	73184295	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014243.1	-1	reviewed	p.C493	1.000	180	0%	48	33.3%	0	-	-	-	-	NULL
ADAMTS3	9508	genome.wustl.edu	37	4	73205384	73205384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014243.1	-1	reviewed	p.L230I	0.968	291	0%	67	25.4%	0	-	benign(0.3)	tolerated(0.1)	neutral(0.379)	NULL
ADAMTS3	9508	genome.wustl.edu	37	4	73433118	73433118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014243.1	-1	reviewed	p.A24T	1.000	251	0%	344	21.2%	0	-	benign(0.002)	tolerated(0.23)	neutral(0.042)	HMMPfam_Pep_M12B_propep
ANKRD17	26057	genome.wustl.edu	37	4	73984479	73984479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032217.3	-1	reviewed	p.L1372M	1.000	328	0%	149	21.5%	10	30%	possibly_damaging(0.885)	deleterious(0)	deleterious(0.790)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD17	26057	genome.wustl.edu	37	4	74005789	74005789	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032217.3	-1	reviewed	p.I848	0.536	707	0.3%	361	13.6%	6	16.6%	-	-	-	superfamily_Ankyrin repeat
ANKRD17	26057	genome.wustl.edu	37	4	74010521	74010521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032217.3	-1	reviewed	p.P633L	1.000	264	0.4%	160	25%	5	60%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ALB	213	genome.wustl.edu	37	4	74276041	74276041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000477.5	+1	reviewed	p.R210W	0.021	120	0%	85	22.4%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	superfamily_Serum albumin-like
PF4	5196	genome.wustl.edu	37	4	74847586	74847586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002619.2	-1	validated	p.A29T	0.022	33	0%	39	10.3%	3	0%	possibly_damaging(0.484)	tolerated(0.31)	neutral(0.188)	NULL
CXCL3	2921	genome.wustl.edu	37	4	74904126	74904126	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002090.2	-1	validated	p.A35	0.035	73	0%	98	20.4%	7	14.2%	-	-	-	HMMPfam_IL8,superfamily_Chemokine_IL8
CXCL2	2920	genome.wustl.edu	37	4	74964591	74964591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002089.3	-1	validated	p.Q50R	0.001	138	0%	230	19.1%	7	57.1%	benign(0.003)	tolerated(0.53)	neutral(0.007)	HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines,PatternScan_SMALL_CYTOKINES_CXC
RCHY1	25898	genome.wustl.edu	37	4	76434089	76434089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015436.2	-1	reviewed	p.I89M	0.993	281	0%	267	14.6%	8	37.5%	benign(0.064)	tolerated(0.08)	neutral(0.304)	HMMPfam_zf-CHY
USO1	8615	genome.wustl.edu	37	4	76733490	76733490	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000441296	+1	known	p.Y596*	0.003	182	0%	76	27.6%	55	38.1%	possibly_damaging(0.502)	tolerated(0.22)	neutral(0.210)	HMMPfam_Uso1_p115_C,superfamily_ARM repeat
PPEF2	5470	genome.wustl.edu	37	4	76794279	76794279	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006239.2	-1	reviewed	e11+1	1.000	464	0%	288	25%	0	-	-	-	-	-
NUP54	53371	genome.wustl.edu	37	4	77053839	77053839	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017426.2	-1	reviewed	p.S248	1.000	402	0%	239	27.6%	20	60%	-	-	-	NULL
SCARB2	950	genome.wustl.edu	37	4	77100813	77100813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005506.2	-1	reviewed	p.E157K	0.983	168	0.6%	64	25%	38	26.3%	benign(0.361)	tolerated(0.38)	neutral(0.132)	HMMPfam_CD36
SCARB2	950	genome.wustl.edu	37	4	77134596	77134596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005506.2	-1	reviewed	p.D34G	0.995	93	0%	134	19.4%	27	44.4%	possibly_damaging(0.663)	tolerated(0.28)	neutral(0.266)	HMMPfam_CD36
CCDC158	339965	genome.wustl.edu	37	4	77272192	77272192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042784.1	-1	validated	p.S874F	0.693	324	0%	101	19.8%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
CCDC158	339965	genome.wustl.edu	37	4	77290673	77290673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042784.1	-1	validated	p.R418Q	1.000	168	0%	110	22.7%	0	-	probably_damaging(0.999)	tolerated(0.26)	deleterious(0.524)	NULL
SHROOM3	57619	genome.wustl.edu	37	4	77661744	77661744	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020859.3	+1	validated	p.G806	0.004	62	0%	115	27%	15	33.3%	-	-	-	NULL
SEPT11	55752	genome.wustl.edu	37	4	77940334	77940334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018243.2	+1	validated	p.A235V	1.000	268	0%	86	27.9%	27	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Septin,superfamily_SSF52540
CCNI	10983	genome.wustl.edu	37	4	77969661	77969661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006835.2	-1	reviewed	p.S282F	1.000	318	0%	118	23.7%	278	34.8%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
CCNI	10983	genome.wustl.edu	37	4	77976515	77976515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006835.2	-1	reviewed	p.S160P	1.000	273	0%	121	25.6%	241	27.8%	benign(0.179)	deleterious(0.02)	neutral(0.400)	NULL
CNOT6L	246175	genome.wustl.edu	37	4	78678051	78678051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144571.2	-1	validated	p.R152Q	1.000	508	0%	268	21.6%	10	50%	benign(0.046)	tolerated(0.63)	neutral(0.006)	NULL
MRPL1	65008	genome.wustl.edu	37	4	78804528	78804528	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000502384	+1	known	p.P46S	0.997	265	0%	95	12.6%	48	31.2%	-	-	-	superfamily_Ribosomal protein L1
FRAS1	80144	genome.wustl.edu	37	4	79351537	79351537	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000510944	+1	known	p.A95T	0.780	104	0%	54	31.5%	0	-	-	-	-	NULL
FRAS1	80144	genome.wustl.edu	37	4	79394642	79394642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025074.6	+1	reviewed	p.R2524C	1.000	679	0%	246	28.5%	1	100%	possibly_damaging(0.598)	deleterious(0.03)	deleterious(0.572)	NULL
FRAS1	80144	genome.wustl.edu	37	4	79460550	79460550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025074.6	+1	reviewed	p.P3800T	1.000	341	0%	197	19.3%	6	83.3%	benign(0.196)	deleterious(0.01)	neutral(0.424)	NULL
ANXA3	306	genome.wustl.edu	37	4	79522686	79522686	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005139.2	+1	reviewed	p.P251	0.969	441	0%	124	22.6%	128	57%	-	-	-	superfamily_Annexin
BMP2K	55589	genome.wustl.edu	37	4	79832311	79832311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198892.1	+1	reviewed	p.Q870H	0.003	209	0%	71	22.5%	3	33.3%	unknown(0)	deleterious(0)	-	NULL
PAQR3	152559	genome.wustl.edu	37	4	79856325	79856325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040202.1	-1	validated	p.A100S	1.000	317	0%	323	24.1%	6	66.6%	possibly_damaging(0.555)	tolerated(0.21)	neutral(0.233)	HMMPfam_HlyIII
GK2	2712	genome.wustl.edu	37	4	80328855	80328855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033214.2	-1	validated	p.A167D	0.997	395	0.3%	335	15.8%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_FGGY_N,superfamily_SSF53067
GK2	2712	genome.wustl.edu	37	4	80329176	80329176	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033214.2	-1	validated	p.I60S	1.000	479	0.4%	516	20.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FGGY_N,superfamily_SSF53067
FGF5	2250	genome.wustl.edu	37	4	81196135	81196135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004464.3	+1	reviewed	p.A143V	1.000	334	0%	308	23.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FGF,HMMSmart_SM00442,superfamily_Cytokine
HNRNPD	3184	genome.wustl.edu	37	4	83278594	83278594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031370.2	-1	reviewed	p.E209K	1.000	445	0%	257	20.2%	322	39.7%	possibly_damaging(0.546)	deleterious(0.05)	deleterious(0.531)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ENOPH1	58478	genome.wustl.edu	37	4	83369072	83369072	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021204.3	+1	validated	e2-1	1.000	356	0%	328	22.6%	0	-	-	-	-	-
TMEM150C	441027	genome.wustl.edu	37	4	83425743	83425743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080506.1	-1	provisional	p.G23E	0.998	335	0%	147	11.6%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Frag1
SEC31A	22872	genome.wustl.edu	37	4	83795793	83795793	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077207.1	-1	reviewed	p.I204L	1.000	271	0%	128	13.3%	21	19%	benign(0.259)	deleterious(0.01)	neutral(0.433)	HMMSmart_SM00320,superfamily_WD40 repeat-like
THAP9	79725	genome.wustl.edu	37	4	83826058	83826058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024672.4	+1	validated	p.A84T	0.989	149	0%	193	20.7%	2	50%	probably_damaging(0.977)	deleterious(0.02)	deleterious(0.802)	HMMPfam_THAP,HMMSmart_DM3
THAP9	79725	genome.wustl.edu	37	4	83839996	83839996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024672.4	+1	validated	p.Q877H	0.000	139	0%	58	13.8%	1	0%	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	NULL
COPS4	51138	genome.wustl.edu	37	4	83987686	83987686	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016129.2	+1	reviewed	p.L328V	0.901	163	0%	84	10.7%	72	25%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	"HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain"
PLAC8	51316	genome.wustl.edu	37	4	84015850	84015850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130715.1	-1	validated	p.R113H	0.000	381	0.3%	183	23%	12	16.6%	benign(0.007)	tolerated(0.24)	neutral(0.037)	NULL
COQ2	27235	genome.wustl.edu	37	4	84185391	84185391	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015697.7	-1	reviewed	p.D372	0.000	296	0%	170	17.6%	24	20.8%	-	-	-	NULL
HELQ	113510	genome.wustl.edu	37	4	84348820	84348820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133636.2	-1	validated	p.L858I	0.995	331	0%	117	13.7%	0	-	probably_damaging(0.969)	tolerated(0.08)	deleterious(0.712)	NULL
HELQ	113510	genome.wustl.edu	37	4	84376766	84376766	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133636.2	-1	validated	p.G27	0.000	78	0%	69	18.8%	7	42.8%	-	-	-	NULL
FAM175A	84142	genome.wustl.edu	37	4	84390212	84390212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139076.2	-1	validated	p.G190D	0.987	263	0%	145	22.1%	3	33.3%	probably_damaging(0.982)	tolerated(0.29)	neutral(0.456)	NULL
NKX6-1	4825	genome.wustl.edu	37	4	85416924	85416924	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006168.2	-1	validated	p.I248	0.997	329	0%	410	21%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
WDFY3	23001	genome.wustl.edu	37	4	85609357	85609357	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014991.4	-1	reviewed	p.I3142S	0.988	280	0%	153	11.8%	9	22.2%	possibly_damaging(0.691)	deleterious(0)	deleterious(0.692)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
WDFY3	23001	genome.wustl.edu	37	4	85617254	85617254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014991.4	-1	reviewed	p.A2924T	1.000	186	0%	107	16.8%	11	27.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_WD40 repeat-like
WDFY3	23001	genome.wustl.edu	37	4	85661544	85661544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014991.4	-1	reviewed	p.S2087L	1.000	447	0%	327	28.7%	2	100%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
WDFY3	23001	genome.wustl.edu	37	4	85701277	85701277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014991.4	-1	reviewed	p.R1450I	1.000	191	0%	104	24%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
WDFY3	23001	genome.wustl.edu	37	4	85724513	85724513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014991.4	-1	reviewed	p.I846T	1.000	231	0%	148	29.7%	0	-	benign(0.031)	deleterious(0.01)	neutral(0.407)	superfamily_ARM repeat
ARHGAP24	83478	genome.wustl.edu	37	4	86844806	86844806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001025616.2	+1	validated	p.D92N	1.000	165	0%	75	21.3%	1	0%	benign(0.364)	tolerated(0.52)	neutral(0.124)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARHGAP24	83478	genome.wustl.edu	37	4	86916073	86916073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001025616.2	+1	validated	p.K422N	1.000	159	0.6%	68	19.1%	1	100%	possibly_damaging(0.872)	tolerated(0.27)	neutral(0.373)	NULL
PTPN13	5783	genome.wustl.edu	37	4	87610236	87610236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080685.2	+1	reviewed	p.R147W	0.994	446	0%	230	22.2%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_KIND,superfamily_SSF101690
PTPN13	5783	genome.wustl.edu	37	4	87622510	87622510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080685.2	+1	reviewed	p.D251N	0.999	175	0%	138	15.2%	0	-	benign(0.177)	deleterious(0)	neutral(0.461)	NULL
PTPN13	5783	genome.wustl.edu	37	4	87691042	87691042	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080685.2	+1	reviewed	p.F1542C	1.000	272	0%	124	25.8%	4	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
PTPN13	5783	genome.wustl.edu	37	4	87731132	87731132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080685.2	+1	reviewed	p.L2437I	1.000	243	0%	177	20.3%	31	45.1%	probably_damaging(0.96)	tolerated(0.08)	deleterious(0.703)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
AFF1	4299	genome.wustl.edu	37	4	88055752	88055752	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005935.2	+1	validated	p.Q1139	0.995	270	0%	90	16.7%	12	58.3%	-	-	-	HMMPfam_AF-4
KLHL8	57563	genome.wustl.edu	37	4	88091267	88091267	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020803.3	-1	validated	p.G501*	1.000	231	0%	145	22.1%	2	50%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL8	57563	genome.wustl.edu	37	4	88097982	88097982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020803.3	-1	validated	p.H379Y	1.000	400	0%	243	12.3%	3	0%	probably_damaging(0.998)	tolerated(0.47)	deleterious(0.485)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
DSPP	1834	genome.wustl.edu	37	4	88533912	88533912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014208.3	+1	reviewed	p.S192G	0.001	374	0%	143	10.5%	0	-	possibly_damaging(0.888)	-	-	NULL
DSPP	1834	genome.wustl.edu	37	4	88535069	88535069	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014208.3	+1	reviewed	p.E419*	0.146	532	0%	185	19.5%	0	-	-	-	-	NULL
DSPP	1834	genome.wustl.edu	37	4	88536718	88536718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000432448	+1	known	p.A480V	0.001	553	0%	226	25.7%	0	-	-	-	-	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_CitMHS,HMMPfam_C4dic_mal_tran,HMMPfam_OPT,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1,HMMPfam_DUF2339
DMP1	1758	genome.wustl.edu	37	4	88580374	88580374	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004407.3	+1	reviewed	p.G35	0.008	311	0%	298	22.5%	0	-	-	-	-	HMMPfam_DMP1
DMP1	1758	genome.wustl.edu	37	4	88583147	88583147	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004407.3	+1	reviewed	p.E73*	0.654	251	0%	124	13.7%	0	-	-	-	-	HMMPfam_DMP1
MEPE	56955	genome.wustl.edu	37	4	88767342	88767342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020203.3	+1	validated	p.R441H	0.000	233	0%	107	28%	0	-	benign(0.021)	tolerated(0.88)	neutral(0.001)	NULL
SPP1	6696	genome.wustl.edu	37	4	88902666	88902666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040058.1	+1	validated	p.D86N	0.853	296	0%	155	27.1%	64	9.3%	possibly_damaging(0.921)	tolerated(0.65)	neutral(0.374)	HMMPfam_Osteopontin,HMMSmart_SM00017
ABCG2	9429	genome.wustl.edu	37	4	89036199	89036199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004827.2	-1	reviewed	p.E285K	1.000	384	0%	120	29.2%	12	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
ABCG2	9429	genome.wustl.edu	37	4	89061130	89061130	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004827.2	-1	reviewed	p.V6	0.000	169	0%	88	26.1%	4	0%	-	-	-	NULL
PPM1K	152926	genome.wustl.edu	37	4	89198353	89198353	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152542.3	-1	validated	p.T161	0.991	261	0%	209	20.6%	3	33.3%	-	-	-	HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
HERC6	55008	genome.wustl.edu	37	4	89306693	89306693	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000502870	+1	known	p.P99H	1.000	150	0%	139	23%	4	50%	-	-	-	HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_RCC1/BLIP-II
HERC6	55008	genome.wustl.edu	37	4	89338711	89338711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017912.3	+1	validated	p.M565V	0.002	244	0%	57	17.5%	7	28.5%	benign(0)	tolerated(0.92)	-	NULL
HERC5	51191	genome.wustl.edu	37	4	89383492	89383492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016323.2	+1	reviewed	p.L225M	1.000	145	0%	151	27.2%	12	16.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
HERC5	51191	genome.wustl.edu	37	4	89391791	89391791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016323.2	+1	reviewed	p.P422H	0.999	255	0%	235	12.8%	5	0%	possibly_damaging(0.486)	tolerated(0.14)	neutral(0.411)	NULL
HERC5	51191	genome.wustl.edu	37	4	89407361	89407361	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016323.2	+1	reviewed	p.Y611	0.000	513	0%	249	23.7%	14	14.2%	-	-	-	NULL
HERC3	8916	genome.wustl.edu	37	4	89577183	89577183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014606.1	+1	provisional	p.A356S	1.000	281	0.4%	67	22.4%	4	25%	benign(0.001)	tolerated(0.98)	-	superfamily_RCC1/BLIP-II
FAM13A	10144	genome.wustl.edu	37	4	89668099	89668099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014883.2	-1	validated	p.S817I	1.000	421	0%	191	24.1%	3	33.3%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
TIGD2	166815	genome.wustl.edu	37	4	90034933	90034933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145715.2	+1	reviewed	p.F270V	0.976	201	0%	270	14.4%	9	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_DDE
GPRIN3	285513	genome.wustl.edu	37	4	90169359	90169359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198281.2	-1	validated	p.P635S	0.999	89	0%	65	16.9%	1	0%	benign(0.018)	tolerated(0.48)	neutral(0.011)	NULL
FAM190A	401145	genome.wustl.edu	37	4	91230231	91230231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145065.1	+1	validated	p.D266Y	1.000	268	0%	82	31.7%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMSB4XP8	7117	genome.wustl.edu	37	4	91760087	91760087	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183049.2	-1	validated	p.T34	1.000	69	0%	50	22%	4494	0.1%	-	-	-	HMMPfam_Thymosin,HMMSmart_THY
BMPR1B	658	genome.wustl.edu	37	4	96052423	96052423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001203.2	+1	reviewed	p.T279I	1.000	196	0%	78	19.2%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
BMPR1B	658	genome.wustl.edu	37	4	96052638	96052638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001203.2	+1	reviewed	p.L351M	1.000	183	0%	75	13.3%	4	25%	possibly_damaging(0.949)	tolerated(0.05)	deleterious(0.738)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
UNC5C	8633	genome.wustl.edu	37	4	96104160	96104160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003728.2	-1	reviewed	p.T780I	1.000	422	0%	265	20.8%	0	-	possibly_damaging(0.733)	deleterious(0.01)	deleterious(0.673)	NULL
PDHA2	5161	genome.wustl.edu	37	4	96761938	96761938	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005390.4	+1	validated	p.K213Q	1.000	170	0%	179	21.8%	0	-	possibly_damaging(0.472)	tolerated(0.08)	neutral(0.456)	HMMPfam_E1_dh,superfamily_SSF52518
EIF4E	1977	genome.wustl.edu	37	4	99802209	99802209	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130679.1	-1	validated	p.G239	1.000	447	0%	255	11.8%	61	55.7%	-	-	-	HMMPfam_IF4E,superfamily_Translation initiation factor eIF4e
ADH6	130	genome.wustl.edu	37	4	100137333	100137333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102470.1	-1	reviewed	p.K35N	0.805	122	0%	77	13%	0	-	possibly_damaging(0.452)	tolerated(0.19)	neutral(0.198)	superfamily_GroES_like,HMMPfam_ADH_N
ADH1C	126	genome.wustl.edu	37	4	100266019	100266019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000669.3	-1	reviewed	p.K189N	1.000	247	0%	132	23.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_NAD(P)-binding Rossmann-fold domains
C4orf17	84103	genome.wustl.edu	37	4	100460497	100460497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032149.2	+1	validated	p.T269I	0.000	335	0%	100	16%	0	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
C4orf17	84103	genome.wustl.edu	37	4	100463192	100463192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032149.2	+1	validated	p.V336M	0.000	209	0%	59	22%	0	-	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
EMCN	51705	genome.wustl.edu	37	4	101337095	101337095	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016242.3	-1	validated	p.S237	1.000	129	0%	32	18.8%	6	0%	-	-	-	HMMPfam_Endomucin
EMCN	51705	genome.wustl.edu	37	4	101337108	101337108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016242.3	-1	validated	p.S233Y	0.993	118	0%	29	13.8%	3	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_Endomucin
EMCN	51705	genome.wustl.edu	37	4	101342495	101342495	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016242.3	-1	validated	p.T203R	1.000	345	0%	88	20.5%	4	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Endomucin
SLC39A8	64116	genome.wustl.edu	37	4	103189135	103189135	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135146.1	-1	reviewed	p.H314	1.000	297	0%	120	20%	37	29.7%	-	-	-	HMMPfam_Zip
NFKB1	4790	genome.wustl.edu	37	4	103500070	103500070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003998.3	+1	reviewed	p.L202M	0.014	183	0.5%	73	12.3%	23	17.3%	benign(0)	tolerated(0.1)	neutral(0.286)	superfamily_ANK,superfamily_P53_like_DNA_bnd,HMMPfam_RHD
NFKB1	4790	genome.wustl.edu	37	4	103533675	103533675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003998.3	+1	reviewed	p.T835N	0.350	221	0%	77	15.6%	39	28.2%	possibly_damaging(0.461)	tolerated(0.07)	deleterious(0.470)	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
MANBA	4126	genome.wustl.edu	37	4	103595175	103595175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005908.3	-1	reviewed	p.G338D	1.000	174	0%	167	24%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_2_C,superfamily_Glyco_hydro_cat
SLC9B1	150159	genome.wustl.edu	37	4	103866476	103866476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139173.2	-1	reviewed	p.A176V	0.990	364	0%	100	19%	0	-	possibly_damaging(0.705)	tolerated(0.09)	deleterious(0.550)	HMMPfam_Na_H_Exchanger
SLC9B2	133308	genome.wustl.edu	37	4	103987551	103987551	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178833.4	-1	validated	p.H68	0.000	740	0%	567	15%	1	0%	-	-	-	NULL
CENPE	1062	genome.wustl.edu	37	4	104030046	104030046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001813.2	-1	validated	p.S2642Y	0.071	586	0%	236	21.2%	17	17.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CENPE	1062	genome.wustl.edu	37	4	104061411	104061411	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001813.2	-1	validated	e37+2	0.700	294	0%	334	17.1%	0	-	-	-	-	-
TACR3	6870	genome.wustl.edu	37	4	104577437	104577437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001059.1	-1	reviewed	p.T268A	1.000	211	0%	51	31.4%	0	-	benign(0.01)	tolerated(0.22)	neutral(0.043)	HMMPfam_7tm_1,superfamily_SSF81321
TACR3	6870	genome.wustl.edu	37	4	104640489	104640489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001059.1	-1	reviewed	p.R115H	1.000	163	0%	152	24.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
TET2	54790	genome.wustl.edu	37	4	106156672	106156672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127208.1	+1	validated	p.L525I	0.000	144	0%	76	23.7%	1	100%	benign(0.012)	tolerated(0.3)	neutral(0.029)	NULL
TET2	54790	genome.wustl.edu	37	4	106158144	106158144	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127208.1	+1	validated	p.S1015	0.152	170	0%	60	18.3%	3	33.3%	-	-	-	NULL
GSTCD	79807	genome.wustl.edu	37	4	106759038	106759038	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031720.2	+1	validated	p.S563A	1.000	240	0%	205	23.4%	7	42.8%	possibly_damaging(0.935)	tolerated(0.35)	neutral(0.401)	NULL
NPNT	255743	genome.wustl.edu	37	4	106863529	106863529	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033047.2	+1	validated	p.L277V	0.016	220	0%	45	28.9%	10	40%	benign(0.079)	tolerated(0.3)	neutral(0.034)	NULL
TBCK	93627	genome.wustl.edu	37	4	107169419	107169419	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033115.3	-1	validated	p.T192	0.970	180	0%	126	12.7%	5	0%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
TBCK	93627	genome.wustl.edu	37	4	107183304	107183304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000273980	-1	known	p.G111D	0.999	380	0%	278	25.2%	6	16.6%	benign(0.001)	tolerated(0.71)	neutral(0.002)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
AIMP1	9255	genome.wustl.edu	37	4	107268735	107268735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142416.1	+1	reviewed	p.Q299H	1.000	295	0%	60	21.7%	85	50.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Nucleic acid-binding proteins
PAPSS1	9061	genome.wustl.edu	37	4	108581209	108581209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005443.4	-1	validated	p.A230V	0.995	445	0%	106	12.3%	23	0%	benign(0)	tolerated(0.21)	neutral(0.044)	superfamily_PUA domain-like
PAPSS1	9061	genome.wustl.edu	37	4	108614925	108614925	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005443.4	-1	validated	e3+2	0.998	152	0%	22	27.3%	0	-	-	-	-	-
SGMS2	166929	genome.wustl.edu	37	4	108824398	108824398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136257.1	+1	reviewed	p.D195Y	1.000	337	0.3%	78	25.6%	11	36.3%	possibly_damaging(0.867)	deleterious(0.02)	deleterious(0.720)	NULL
OSTC	58505	genome.wustl.edu	37	4	109576775	109576775	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021227.2	+1	validated	p.E65	1.000	391	0%	228	17.5%	202	22.7%	-	-	-	HMMPfam_DUF2055
AGXT2L1	64850	genome.wustl.edu	37	4	109670610	109670610	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031279.3	-1	validated	p.H237	0.000	342	0%	210	22.9%	0	-	-	-	-	HMMPfam_Aminotran_3,superfamily_PLP-dependent transferases
SEC24B	10427	genome.wustl.edu	37	4	110394200	110394200	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006323.2	+1	reviewed	p.Q306	0.977	346	0%	302	17.2%	13	61.5%	-	-	-	NULL
SEC24B	10427	genome.wustl.edu	37	4	110433113	110433113	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006323.2	+1	reviewed	p.Q593*	1.000	368	0%	426	12%	13	7.6%	-	-	-	superfamily_Zn-finger domain of Sec23/24,superfamily_beta-sandwich domain of Sec23/24
CCDC109B	55013	genome.wustl.edu	37	4	110585478	110585478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017918.4	+1	validated	p.D127N	0.995	612	0%	304	16.1%	32	46.8%	benign(0.194)	deleterious(0.02)	neutral(0.401)	HMMPfam_DUF607
CASP6	839	genome.wustl.edu	37	4	110610710	110610710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001226.3	-1	reviewed	p.R220W	1.000	183	0%	188	15.4%	84	47.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
GAR1	54433	genome.wustl.edu	37	4	110740292	110740292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000503671	+1	known	p.A169S	0.000	183	0%	178	27%	0	-	-	-	-	NULL
LRIT3	345193	genome.wustl.edu	37	4	110791038	110791038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198506.2	+1	validated	p.S333Y	0.004	613	0%	149	22.8%	0	-	possibly_damaging(0.604)	tolerated(1)	neutral(0.209)	NULL
EGF	1950	genome.wustl.edu	37	4	110834591	110834591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001963.4	+1	reviewed	p.A34T	0.000	244	0%	80	23.7%	0	-	benign(0.001)	tolerated(0.56)	neutral(0.006)	NULL
EGF	1950	genome.wustl.edu	37	4	110865006	110865006	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001963.4	+1	reviewed	p.F173C	1.000	624	0%	339	21.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LY,superfamily_SSF63825
EGF	1950	genome.wustl.edu	37	4	110897275	110897275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001963.4	+1	reviewed	p.G646E	1.000	356	0%	105	19%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
ENPEP	2028	genome.wustl.edu	37	4	111409837	111409837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001977.3	+1	validated	p.A262V	1.000	362	0%	196	18.4%	2	0%	benign(0.03)	tolerated(0.18)	neutral(0.058)	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
ENPEP	2028	genome.wustl.edu	37	4	111470692	111470692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001977.3	+1	validated	p.R745H	1.000	399	0%	131	11.5%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENPEP	2028	genome.wustl.edu	37	4	111482586	111482586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001977.3	+1	validated	p.P916T	1.000	400	0.3%	153	30.1%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PITX2	5308	genome.wustl.edu	37	4	111539513	111539513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000325.5	-1	reviewed	p.S248I	1.000	138	0%	193	23.8%	24	37.5%	benign(0.026)	deleterious(0.03)	neutral(0.365)	NULL
PITX2	5308	genome.wustl.edu	37	4	111553537	111553537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153426.1	-1	reviewed	p.S49N	0.983	116	0%	104	25%	2	0%	benign(0.003)	deleterious(0.01)	neutral(0.406)	NULL
TIFA	92610	genome.wustl.edu	37	4	113199269	113199269	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052864.2	-1	validated	p.E102*	0.984	134	0%	89	28.1%	15	13.3%	-	-	-	HMMPfam_FHA,HMMSmart_FHA
ALPK1	80216	genome.wustl.edu	37	4	113356353	113356353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102406.1	+1	validated	p.Q1028H	1.000	207	0%	70	10%	15	6.6%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like)
C4orf21	55345	genome.wustl.edu	37	4	113461229	113461229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000505019	-1	known	p.V1988M	1.000	237	0%	137	30.7%	5	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LARP7	51574	genome.wustl.edu	37	4	113568208	113568208	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000503316	+1	known	NULL	1.000	244	0%	223	16.6%	46	50%	-	-	-	-
ARSJ	79642	genome.wustl.edu	37	4	114899961	114899961	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024590.3	-1	validated	p.P10	0.950	40	0%	59	13.6%	6	50%	-	-	-	NULL
UGT8	7368	genome.wustl.edu	37	4	115544571	115544571	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128174.1	+1	validated	p.E179*	1.000	306	0%	176	17.6%	3	0%	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT8	7368	genome.wustl.edu	37	4	115597395	115597395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128174.1	+1	validated	p.G526D	1.000	211	0%	163	22.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NDST4	64579	genome.wustl.edu	37	4	115856418	115856418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022569.1	-1	provisional	p.E494K	1.000	647	0%	449	20.3%	0	-	benign(0.001)	tolerated(1)	-	NULL
NDST3	9348	genome.wustl.edu	37	4	119026230	119026230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004784.2	+1	reviewed	p.L347M	1.000	256	0%	165	15.2%	0	-	probably_damaging(0.989)	tolerated(0.1)	deleterious(0.726)	NULL
NDST3	9348	genome.wustl.edu	37	4	119036027	119036027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004784.2	+1	reviewed	p.P379H	1.000	469	0%	168	23.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PRSS12	8492	genome.wustl.edu	37	4	119239704	119239704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003619.2	-1	reviewed	p.A327T	1.000	221	0%	90	21.1%	2	0%	possibly_damaging(0.935)	tolerated(0.35)	neutral(0.401)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
SEC24D	9871	genome.wustl.edu	37	4	119652450	119652450	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000419654	-1	known	p.A125	0.006	158	0%	50	28%	0	-	-	-	-	NULL
SEC24D	9871	genome.wustl.edu	37	4	119652613	119652613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014822.2	-1	reviewed	p.S909F	1.000	244	0%	88	21.6%	38	26.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gelsolin,superfamily_C-terminal gelsolin-like domain of Sec23/24
SEC24D	9871	genome.wustl.edu	37	4	119678945	119678945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014822.2	-1	reviewed	p.S451N	1.000	602	0%	162	21.6%	8	12.5%	benign(0)	tolerated(1)	-	HMMPfam_Sec23_trunk,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24
SYNPO2	171024	genome.wustl.edu	37	4	119947837	119947837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133477.2	+1	validated	p.E105K	0.004	176	0%	71	22.5%	1	0%	benign(0.026)	deleterious(0.05)	neutral(0.346)	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119951821	119951821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133477.2	+1	validated	p.A631T	0.002	184	0.5%	83	18.1%	4	0%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119951913	119951913	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000504178	+1	known	p.R613*	0.002	236	0.4%	79	13.9%	1	0%	-	-	-	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119952570	119952570	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000504178	+1	known	p.V832I	1.000	184	0%	70	21.4%	4	0%	-	-	-	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119978645	119978645	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133477.2	+1	validated	p.Y1114*	0.153	228	0%	188	21.8%	2	0%	-	-	-	NULL
MYOZ2	51778	genome.wustl.edu	37	4	120072131	120072131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016599.3	+1	validated	p.R61C	1.000	338	0%	84	15.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Calsarcin
MYOZ2	51778	genome.wustl.edu	37	4	120107206	120107206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016599.3	+1	validated	p.D216N	1.000	308	0%	231	23.8%	0	-	probably_damaging(0.998)	tolerated(0.39)	deleterious(0.490)	HMMPfam_Calsarcin
USP53	54532	genome.wustl.edu	37	4	120214088	120214088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019050.2	+1	validated	p.H982Y	0.002	152	0.7%	158	21.5%	9	22.2%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
PDE5A	8654	genome.wustl.edu	37	4	120425696	120425696	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083.3	-1	reviewed	p.Q776*	1.000	324	0%	70	14.3%	0	-	-	-	-	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
PRDM5	11107	genome.wustl.edu	37	4	121616348	121616348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018699.2	-1	reviewed	p.C604Y	1.000	379	0%	89	27%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PRDM5	11107	genome.wustl.edu	37	4	121702334	121702334	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018699.2	-1	reviewed	p.A469	0.011	315	0%	70	15.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PRDM5	11107	genome.wustl.edu	37	4	121706204	121706204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018699.2	-1	reviewed	p.A411S	1.000	276	0%	65	18.5%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NDNF	79625	genome.wustl.edu	37	4	121958221	121958221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024574.3	-1	validated	p.S302F	1.000	391	0%	108	21.3%	1	0%	possibly_damaging(0.783)	deleterious(0.02)	deleterious(0.676)	HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_DUF2369
TNIP3	79931	genome.wustl.edu	37	4	122059836	122059836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128843.1	-1	validated	p.D297Y	1.000	430	0.2%	134	17.9%	2	0%	possibly_damaging(0.882)	tolerated(0.06)	deleterious(0.667)	NULL
TNIP3	79931	genome.wustl.edu	37	4	122063004	122063004	+	Missense_Mutation	SNP	G	G	T	rs35858395		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000322647	-1	known	p.A283D	0.000	251	0%	70	34.3%	1	0%	-	-	-	NULL
QRFPR	84109	genome.wustl.edu	37	4	122254182	122254182	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198179.2	-1	validated	p.E197	0.972	187	0%	91	25.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
BBS7	55212	genome.wustl.edu	37	4	122780277	122780277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176824.1	-1	reviewed	p.C133Y	1.000	204	0%	136	13.2%	6	16.6%	benign(0.326)	tolerated(0.43)	neutral(0.115)	NULL
BBS7	55212	genome.wustl.edu	37	4	122784427	122784427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176824.1	-1	reviewed	p.I37T	0.996	456	0%	392	10.7%	16	0%	benign(0.007)	deleterious(0.01)	neutral(0.406)	NULL
TRPC3	7222	genome.wustl.edu	37	4	122828636	122828636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130698.1	-1	validated	p.A627T	1.000	126	0%	46	32.6%	0	-	benign(0.217)	tolerated(0.16)	neutral(0.081)	HMMPfam_Ion_trans
TRPC3	7222	genome.wustl.edu	37	4	122831398	122831398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130698.1	-1	validated	p.T568M	0.226	365	0.3%	117	20.5%	0	-	benign(0.008)	deleterious(0.02)	neutral(0.383)	HMMPfam_Ion_trans
TRPC3	7222	genome.wustl.edu	37	4	122833042	122833042	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130698.1	-1	validated	p.V516	0.996	158	0.6%	92	18.5%	0	-	-	-	-	HMMPfam_Ion_trans
KIAA1109	84162	genome.wustl.edu	37	4	123236821	123236821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015312.3	+1	reviewed	p.T3506I	1.000	199	0%	45	11.1%	1	0%	possibly_damaging(0.607)	deleterious(0.03)	deleterious(0.575)	NULL
ADAD1	132612	genome.wustl.edu	37	4	123301256	123301256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139243.3	+1	validated	p.S11L	0.998	122	0%	175	24.6%	0	-	benign(0.167)	deleterious(0)	neutral(0.460)	NULL
BBS12	166379	genome.wustl.edu	37	4	123664339	123664339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152618.2	+1	reviewed	p.R431Q	0.003	124	0%	105	21%	5	60%	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like
SPATA5	166378	genome.wustl.edu	37	4	123855498	123855498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145207.2	+1	validated	p.T251N	1.000	124	0%	105	21%	3	66.6%	possibly_damaging(0.901)	deleterious(0.01)	deleterious(0.762)	NULL
SPATA5	166378	genome.wustl.edu	37	4	124177291	124177291	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145207.2	+1	validated	p.L821	0.987	353	0%	96	16.7%	3	33.3%	-	-	-	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPRY1	10252	genome.wustl.edu	37	4	124322691	124322691	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005841.1	+1	validated	e1-1	1.000	187	0%	217	20.3%	1	0%	-	-	-	-
ANKRD50	57182	genome.wustl.edu	37	4	125591197	125591197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020337.2	-1	validated	p.R1079C	1.000	118	0%	67	22.4%	3	33.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD50	57182	genome.wustl.edu	37	4	125631293	125631293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020337.2	-1	validated	p.G125V	1.000	144	0.7%	221	22.6%	1	100%	benign(0.014)	tolerated(0.19)	neutral(0.050)	NULL
FAT4	79633	genome.wustl.edu	37	4	126240133	126240133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024582.4	+1	validated	p.R856K	1.000	226	0%	189	20.6%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126242264	126242264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024582.4	+1	validated	p.E1566D	1.000	179	0%	135	27.4%	0	-	probably_damaging(0.985)	tolerated(0.09)	deleterious(0.728)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126371652	126371652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024582.4	+1	validated	p.E3161K	1.000	140	0%	67	28.4%	0	-	benign(0.042)	tolerated(1)	neutral(0.003)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126398514	126398514	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000457801	+1	known	p.C4131	0.003	193	0%	103	24.3%	0	-	-	-	-	superfamily_ConA_like_lec_gl
FAT4	79633	genome.wustl.edu	37	4	126412412	126412412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024582.4	+1	validated	p.R4812M	0.999	85	0%	62	24.2%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
INTU	27152	genome.wustl.edu	37	4	128608910	128608910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015693.3	+1	validated	p.A446V	0.002	430	0%	113	20.4%	3	0%	benign(0.077)	tolerated(0.22)	neutral(0.048)	NULL
PLK4	10733	genome.wustl.edu	37	4	128804640	128804640	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014264.3	+1	reviewed	p.E90A	1.000	301	0%	342	11.1%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PLK4	10733	genome.wustl.edu	37	4	128815017	128815017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014264.3	+1	reviewed	p.A848V	0.423	139	0%	66	27.3%	7	0%	benign(0)	tolerated(0.51)	neutral(0.009)	superfamily_Kinase_like,HMMPfam_Sak_Polo
MFSD8	256471	genome.wustl.edu	37	4	128842718	128842718	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152778.2	-1	reviewed	p.S437	0.999	192	0.5%	98	20.4%	10	60%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
MFSD8	256471	genome.wustl.edu	37	4	128863229	128863229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152778.2	-1	reviewed	p.C175Y	1.000	411	0%	159	20.8%	5	0%	possibly_damaging(0.731)	deleterious(0.02)	deleterious(0.650)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
MFSD8	256471	genome.wustl.edu	37	4	128886237	128886237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152778.2	-1	reviewed	p.P18T	0.086	57	0%	100	24%	5	60%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
C4orf29	80167	genome.wustl.edu	37	4	128904141	128904141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039717.1	+1	predicted	p.R11W	1.000	402	0%	200	20%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C4orf29	80167	genome.wustl.edu	37	4	128949986	128949986	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039717.1	+1	predicted	p.C352	1.000	67	0%	38	13.2%	5	60%	-	-	-	HMMPfam_DUF2048,superfamily_alpha/beta-Hydrolases
LARP1B	55132	genome.wustl.edu	37	4	129043185	129043185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018078.2	+1	reviewed	p.P456S	1.000	271	0%	108	18.5%	3	0%	possibly_damaging(0.712)	tolerated(0.15)	deleterious(0.498)	NULL
SCLT1	132320	genome.wustl.edu	37	4	130014223	130014223	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144643.2	-1	validated	e1+2	1.000	340	0%	302	19.2%	0	-	-	-	-	-
PCDH10	57575	genome.wustl.edu	37	4	134071798	134071798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032961.1	+1	reviewed	p.S168F	0.983	23	0%	30	16.7%	0	-	benign(0.122)	tolerated(0.67)	neutral(0.013)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH18	54510	genome.wustl.edu	37	4	138442614	138442614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019035.3	-1	reviewed	p.D993N	0.898	103	0%	46	23.9%	15	0%	benign(0.005)	tolerated(0.15)	neutral(0.241)	NULL
SLC7A11	23657	genome.wustl.edu	37	4	139153522	139153522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014331.3	-1	validated	p.A140D	1.000	160	0%	73	17.8%	1	0%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_AA_permease
ELF2	1998	genome.wustl.edu	37	4	139980708	139980708	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201999.1	-1	validated	p.K392T	1.000	188	0%	128	28.9%	20	50%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	NULL
NAA15	80155	genome.wustl.edu	37	4	140265403	140265403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_057175.3	+1	validated	p.R201W	1.000	350	0%	316	22.5%	11	54.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_TPR-like
NAA15	80155	genome.wustl.edu	37	4	140270622	140270622	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_057175.3	+1	validated	p.L233R	1.000	83	0%	116	10.3%	8	12.5%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMSmart_SM00028,superfamily_TPR-like
RAB33B	83452	genome.wustl.edu	37	4	140375402	140375402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031296.1	+1	provisional	p.A18V	0.000	100	0%	148	18.9%	3	33.3%	unknown(0)	tolerated(0.39)	-	NULL
SETD7	80854	genome.wustl.edu	37	4	140450328	140450328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030648.2	-1	validated	p.T140N	1.000	347	0%	147	19%	3	66.6%	probably_damaging(0.953)	tolerated(0.29)	neutral(0.426)	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
MAML3	55534	genome.wustl.edu	37	4	140646965	140646965	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018717.4	-1	validated	p.R781G	1.000	305	0.3%	215	23.3%	3	33.3%	probably_damaging(1)	tolerated(0.31)	deleterious(0.527)	NULL
CLGN	1047	genome.wustl.edu	37	4	141317276	141317276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130675.1	-1	reviewed	p.P323H	0.498	486	0.2%	294	19.4%	3	0%	possibly_damaging(0.607)	tolerated(0.07)	deleterious(0.529)	HMMPfam_Calreticulin,superfamily_P-domain of calnexin/calreticulin,PatternScan_CALRETICULIN_REPEAT
ELMOD2	255520	genome.wustl.edu	37	4	141456900	141456900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153702.2	+1	validated	p.A62V	0.997	410	0%	344	23.5%	15	26.6%	probably_damaging(0.998)	tolerated(0.4)	deleterious(0.490)	NULL
TBC1D9	23158	genome.wustl.edu	37	4	141590148	141590148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015130.2	-1	validated	p.R504H	1.000	106	0%	116	24.1%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D9	23158	genome.wustl.edu	37	4	141590942	141590942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015130.2	-1	validated	p.S428I	1.000	103	0%	68	23.5%	13	53.8%	benign(0.168)	tolerated(0.17)	neutral(0.074)	NULL
ZNF330	27309	genome.wustl.edu	37	4	142153678	142153678	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014487.4	+1	validated	e8-1	1.000	149	0%	72	23.6%	0	-	-	-	-	-
GAB1	2549	genome.wustl.edu	37	4	144359272	144359272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207123.2	+1	reviewed	p.Q238H	0.998	268	0%	96	16.7%	2	0%	probably_damaging(0.988)	tolerated(0.11)	deleterious(0.709)	NULL
GAB1	2549	genome.wustl.edu	37	4	144361037	144361037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207123.2	+1	reviewed	p.H426Q	1.000	494	0%	178	17.4%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
SMARCA5	8467	genome.wustl.edu	37	4	144459854	144459854	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003601.2	+1	reviewed	p.D536A	1.000	294	0%	143	21%	62	45.1%	benign(0)	deleterious(0.05)	neutral(0.345)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
SMARCA5	8467	genome.wustl.edu	37	4	144467147	144467147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003601.2	+1	reviewed	p.A823T	1.000	196	0%	78	20.5%	73	45.2%	possibly_damaging(0.799)	deleterious(0.02)	deleterious(0.684)	HMMPfam_HAND,superfamily_Nucl_remodel_ATPase_ISWI_HAND,superfamily_SSF52540
SMARCA5	8467	genome.wustl.edu	37	4	144471240	144471240	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003601.2	+1	reviewed	p.R1026*	1.000	278	0%	154	22.7%	155	32.2%	-	-	-	NULL
FREM3	166752	genome.wustl.edu	37	4	144542291	144542291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000329798	-1	known	p.A1893V	0.990	251	0.4%	158	22.2%	0	-	possibly_damaging(0.864)	tolerated(0.07)	deleterious(0.653)	HMMPfam_Calx-beta,HMMSmart_SM00237
FREM3	166752	genome.wustl.edu	37	4	144548800	144548800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000329798	-1	known	p.R1797C	0.994	530	0%	264	19.3%	0	-	benign(0.2)	deleterious(0)	neutral(0.464)	HMMPfam_Calx-beta,HMMSmart_SM00237
FREM3	166752	genome.wustl.edu	37	4	144617398	144617398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000329798	-1	known	p.D1477E	0.988	322	0%	278	20.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
FREM3	166752	genome.wustl.edu	37	4	144617618	144617618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000329798	-1	known	p.T1404N	1.000	354	0%	297	26.3%	0	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	NULL
FREM3	166752	genome.wustl.edu	37	4	144618552	144618552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000329798	-1	known	p.L1093I	0.970	165	0%	140	24.3%	0	-	benign(0.325)	tolerated(0.55)	neutral(0.109)	NULL
ABCE1	6059	genome.wustl.edu	37	4	146029243	146029243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040876.1	+1	reviewed	p.A89V	1.000	353	0%	281	22.1%	37	43.2%	benign(0.002)	tolerated(0.36)	neutral(0.020)	superfamily_P-loop containing nucleoside triphosphate hydrolases
OTUD4	54726	genome.wustl.edu	37	4	146067564	146067564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102653.1	-1	reviewed	p.R361I	1.000	247	0%	117	23.1%	9	55.5%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
MMAA	166785	genome.wustl.edu	37	4	146575237	146575237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172250.2	+1	reviewed	p.A304V	0.983	389	0%	246	24.4%	24	66.6%	benign(0.014)	tolerated(0.1)	neutral(0.287)	HMMPfam_ArgK,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF827	152485	genome.wustl.edu	37	4	146744579	146744579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178835.3	-1	validated	p.A793V	0.414	510	0%	260	20.8%	5	40%	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
ZNF827	152485	genome.wustl.edu	37	4	146806856	146806856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178835.3	-1	validated	p.A574V	1.000	172	0%	76	10.5%	1	100%	benign(0.178)	deleterious(0)	neutral(0.461)	NULL
LSM6	11157	genome.wustl.edu	37	4	147108497	147108497	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007080.2	+1	validated	p.L56	1.000	305	0%	202	11.4%	68	22%	-	-	-	HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins
POU4F2	5458	genome.wustl.edu	37	4	147561858	147561858	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004575.2	+1	validated	p.A376	1.000	47	0%	87	14.9%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
TMEM184C	55751	genome.wustl.edu	37	4	148555323	148555323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018241.2	+1	validated	p.R352Q	1.000	87	0%	36	22.2%	30	36.6%	possibly_damaging(0.901)	deleterious(0.04)	deleterious(0.706)	NULL
PRMT10	90826	genome.wustl.edu	37	4	148575522	148575522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138364.2	-1	provisional	p.S509I	0.984	380	0%	138	19.6%	13	30.7%	benign(0.11)	tolerated(0.11)	neutral(0.280)	NULL
NR3C2	4306	genome.wustl.edu	37	4	149035299	149035299	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000901.4	-1	reviewed	p.Q919*	1.000	381	0%	124	16.1%	1	100%	-	-	-	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
NR3C2	4306	genome.wustl.edu	37	4	149356524	149356524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000901.4	-1	reviewed	p.P497S	0.999	199	0%	125	25.6%	1	100%	benign(0.005)	tolerated(0.3)	neutral(0.029)	NULL
NR3C2	4306	genome.wustl.edu	37	4	149357802	149357802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000901.4	-1	reviewed	p.L71I	1.000	167	0%	169	23.1%	0	-	possibly_damaging(0.853)	deleterious(0.01)	deleterious(0.734)	NULL
LRBA	987	genome.wustl.edu	37	4	151388831	151388831	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000509835	-1	known	p.C911Y	1.000	205	0%	49	18.4%	14	50%	-	-	-	HMMPfam_Beach,superfamily_BEACH domain
SH3D19	152503	genome.wustl.edu	37	4	152069121	152069121	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009555.3	-1	validated	p.L399	1.000	364	0%	206	20.9%	7	28.5%	-	-	-	superfamily_SH3-domain
SH3D19	152503	genome.wustl.edu	37	4	152096028	152096028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009555.3	-1	validated	p.P163H	0.984	268	0%	194	21.1%	4	25%	probably_damaging(0.984)	deleterious(0.04)	deleterious(0.779)	NULL
TIGD4	201798	genome.wustl.edu	37	4	153690845	153690845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145720.2	-1	reviewed	p.S438P	0.000	313	0%	300	23%	1	0%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
FHDC1	85462	genome.wustl.edu	37	4	153896981	153896981	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033393.2	+1	validated	p.G846	0.000	40	0%	41	24.4%	2	100%	-	-	-	NULL
TRIM2	23321	genome.wustl.edu	37	4	154215568	154215568	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015271.3	+1	validated	p.Q239	1.000	408	0%	336	22%	3	66.6%	-	-	-	HMMSmart_SM00502
TRIM2	23321	genome.wustl.edu	37	4	154216885	154216885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015271.3	+1	validated	p.V403M	1.000	107	0%	86	30.2%	8	62.5%	possibly_damaging(0.625)	tolerated(0.25)	neutral(0.255)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
KIAA0922	23240	genome.wustl.edu	37	4	154523428	154523428	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015196.3	+1	validated	p.F796	0.705	390	0%	95	25.3%	6	16.6%	-	-	-	NULL
KIAA0922	23240	genome.wustl.edu	37	4	154557563	154557563	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015196.3	+1	validated	p.T1555	0.952	208	0%	134	20.9%	44	31.8%	-	-	-	NULL
RNF175	285533	genome.wustl.edu	37	4	154636799	154636799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173662.2	-1	validated	p.R216W	0.994	190	0%	128	22.7%	1	0%	benign(0.219)	deleterious(0.04)	neutral(0.370)	superfamily_RING/U-box
DCHS2	54798	genome.wustl.edu	37	4	155219735	155219735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017639.3	-1	validated	p.P1456S	0.895	271	0%	76	21.1%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155241810	155241810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017639.3	-1	validated	p.P1126S	0.029	592	0%	218	23.9%	0	-	probably_damaging(0.955)	tolerated(1)	neutral(0.399)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155243574	155243574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017639.3	-1	validated	p.S907L	0.279	437	0%	200	23%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155254352	155254352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017639.3	-1	validated	p.A504E	0.998	110	0%	93	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155256154	155256154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017639.3	-1	validated	p.A361V	0.999	319	0%	317	25.2%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_Cadherin-like
PLRG1	5356	genome.wustl.edu	37	4	155463411	155463411	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002669.2	-1	provisional	p.G205	1.000	292	0%	149	18.8%	32	43.7%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FGB	2244	genome.wustl.edu	37	4	155491739	155491739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005141.4	+1	reviewed	p.K471N	1.000	349	0%	101	27.7%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FGA	2243	genome.wustl.edu	37	4	155505313	155505313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000508.3	-1	reviewed	p.A855D	0.002	117	0.9%	51	23.5%	0	-	probably_damaging(0.986)	tolerated(0.26)	deleterious(0.469)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FGA	2243	genome.wustl.edu	37	4	155510004	155510004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000508.3	-1	reviewed	p.S102Y	0.986	501	0%	213	12.7%	0	-	possibly_damaging(0.733)	deleterious(0.02)	deleterious(0.651)	HMMPfam_Fib_alpha
NPY2R	4887	genome.wustl.edu	37	4	156135606	156135606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000910.2	+1	provisional	p.A172V	1.000	35	0%	49	20.4%	0	-	benign(0.144)	tolerated(0.4)	neutral(0.029)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NPY2R	4887	genome.wustl.edu	37	4	156136177	156136177	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000910.2	+1	provisional	p.N362	0.996	187	0%	165	16.4%	0	-	-	-	-	NULL
MAP9	79884	genome.wustl.edu	37	4	156274077	156274077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039580.1	-1	validated	p.A559T	0.997	274	0%	176	18.2%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
MAP9	79884	genome.wustl.edu	37	4	156278657	156278657	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039580.1	-1	validated	p.D355	0.935	367	0%	164	20.1%	2	50%	-	-	-	NULL
CTSO	1519	genome.wustl.edu	37	4	156850724	156850724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001334.2	-1	reviewed	p.A270T	1.000	198	0%	66	16.7%	16	43.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
CTSO	1519	genome.wustl.edu	37	4	156863605	156863605	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001334.2	-1	reviewed	p.I83N	0.999	275	0%	169	17.8%	18	33.3%	possibly_damaging(0.585)	tolerated(0.48)	neutral(0.212)	superfamily_SSF54001
GRIA2	2891	genome.wustl.edu	37	4	158282224	158282224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083619.1	+1	reviewed	p.N785S	1.000	423	0%	151	21.2%	0	-	probably_damaging(0.974)	tolerated(0.06)	deleterious(0.738)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
FAM198B	51313	genome.wustl.edu	37	4	159091963	159091963	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031700.2	-1	validated	p.R189*	0.000	66	0%	56	25%	4	0%	-	-	-	NULL
RXFP1	59350	genome.wustl.edu	37	4	159533502	159533502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021634.2	+1	provisional	p.S223Y	1.000	350	0%	182	22.5%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_L domain-like
RXFP1	59350	genome.wustl.edu	37	4	159568147	159568147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021634.2	+1	provisional	p.P517H	1.000	426	0%	206	23.3%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C4orf46	201725	genome.wustl.edu	37	4	159590812	159590812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008393.2	-1	validated	p.R99W	0.950	276	0.7%	299	26.1%	12	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ETFDH	2110	genome.wustl.edu	37	4	159603419	159603419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004453.2	+1	reviewed	p.A83V	1.000	310	0%	175	18.3%	9	22.2%	possibly_damaging(0.821)	deleterious(0)	deleterious(0.755)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
FNIP2	57600	genome.wustl.edu	37	4	159750356	159750356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020840.1	+1	validated	p.K120N	0.995	240	0%	220	16.8%	1	100%	probably_damaging(0.994)	tolerated(0.12)	deleterious(0.713)	NULL
FNIP2	57600	genome.wustl.edu	37	4	159789962	159789962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020840.1	+1	validated	p.A725V	0.001	21	0%	17	29.4%	3	66.6%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
FNIP2	57600	genome.wustl.edu	37	4	159791585	159791585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020840.1	+1	validated	p.K971N	1.000	167	0%	128	17.2%	3	66.6%	probably_damaging(0.971)	deleterious(0.04)	deleterious(0.762)	NULL
RAPGEF2	9693	genome.wustl.edu	37	4	160273838	160273838	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000510253	+1	known	p.A185V	0.986	187	0%	166	21.7%	8	87.5%	-	-	-	NULL
FSTL5	56884	genome.wustl.edu	37	4	162421226	162421226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020116.3	-1	validated	p.P467L	1.000	450	0%	162	21%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	superfamily_Amine_DH_B_like
NAF1	92345	genome.wustl.edu	37	4	164048258	164048258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128931.1	-1	validated	p.I348T	0.002	133	0%	81	13.6%	1	0%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
NAF1	92345	genome.wustl.edu	37	4	164054353	164054353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138386.2	-1	validated	p.S329Y	0.960	680	0%	399	20.3%	21	33.3%	benign(0.377)	deleterious(0.02)	deleterious(0.504)	HMMPfam_NAF1
NPY1R	4886	genome.wustl.edu	37	4	164246499	164246499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000909.4	-1	validated	p.A371T	0.007	328	0%	235	18.7%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
NPY5R	4889	genome.wustl.edu	37	4	164271440	164271440	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006174.2	+1	provisional	p.L5	0.940	138	0.7%	205	21%	0	-	-	-	-	superfamily_SSF81321
TRIM60	166655	genome.wustl.edu	37	4	165962177	165962177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152620.2	+1	reviewed	p.R318Q	0.000	262	0%	250	21.6%	0	-	benign(0.04)	tolerated(0.3)	neutral(0.031)	HMMSmart_PRY
TRIM75	391714	genome.wustl.edu	37	4	165981094	165981094	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000322402	+1	known	p.S265	0.000	83	1.2%	50	32%	0	-	-	-	-	NULL
TMEM192	201931	genome.wustl.edu	37	4	166024249	166024249	+	Splice_Site	SNP	C	C	A	rs112288743	byCluster	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001100389.1	-1	validated	e2-1	1.000	336	0.3%	185	23.8%	0	-	-	-	-	-
CPE	1363	genome.wustl.edu	37	4	166385567	166385567	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001873.2	+1	reviewed	p.G111	1.000	373	0%	108	25%	6	33.3%	-	-	-	HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases
CPE	1363	genome.wustl.edu	37	4	166405592	166405592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001873.2	+1	reviewed	p.S270N	1.000	415	0%	193	11.4%	18	0%	probably_damaging(0.993)	tolerated(0.1)	deleterious(0.736)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
TLL1	7092	genome.wustl.edu	37	4	166910580	166910580	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012464.3	+1	reviewed	p.F73V	1.000	428	0%	215	16.7%	0	-	benign(0.314)	deleterious(0.02)	deleterious(0.481)	NULL
TLL1	7092	genome.wustl.edu	37	4	166963202	166963202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012464.3	+1	reviewed	p.P429S	1.000	467	0%	119	15.1%	0	-	possibly_damaging(0.755)	deleterious(0.05)	deleterious(0.624)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TLL1	7092	genome.wustl.edu	37	4	166996043	166996043	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012464.3	+1	reviewed	p.C734*	1.000	311	0%	54	11.1%	0	-	-	-	-	superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
SPOCK3	50859	genome.wustl.edu	37	4	167658640	167658640	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016950.2	-1	validated	p.R373S	0.999	694	0%	131	12.2%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,superfamily_Thyroglobulin type-1 domain
ANXA10	11199	genome.wustl.edu	37	4	169049272	169049272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007193.3	+1	reviewed	p.P19H	0.958	446	0%	157	17.8%	2	100%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_Annexin
DDX60L	91351	genome.wustl.edu	37	4	169379042	169379042	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012967.1	-1	validated	e5+1	0.958	206	0%	183	24%	0	-	-	-	-	-
DDX60L	91351	genome.wustl.edu	37	4	169392897	169392897	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012967.1	-1	validated	e3+1	1.000	194	0%	116	28.4%	0	-	-	-	-	-
PALLD	23022	genome.wustl.edu	37	4	169432836	169432836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016081.3	+1	reviewed	p.E61K	0.186	70	1.4%	27	25.9%	0	-	possibly_damaging(0.811)	tolerated(0.17)	neutral(0.364)	NULL
PALLD	23022	genome.wustl.edu	37	4	169432957	169432957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016081.3	+1	reviewed	p.P101H	0.000	43	0%	23	30.4%	0	-	possibly_damaging(0.46)	deleterious(0)	deleterious(0.596)	NULL
NEK1	4750	genome.wustl.edu	37	4	170321776	170321776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012224.1	-1	validated	p.E1176K	1.000	298	0%	165	18.8%	12	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NEK1	4750	genome.wustl.edu	37	4	170429434	170429434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012224.1	-1	validated	p.R572C	1.000	475	0%	319	18.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CLCN3	1182	genome.wustl.edu	37	4	170616784	170616784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173872.2	+1	validated	p.A320T	1.000	189	0%	81	13.6%	8	62.5%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_Voltage_CLC,superfamily_Cl-channel_core
CLCN3	1182	genome.wustl.edu	37	4	170625282	170625282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173872.2	+1	validated	p.A566V	1.000	589	0%	212	23.1%	28	46.4%	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_Voltage_CLC,superfamily_Cl-channel_core
AADAT	51166	genome.wustl.edu	37	4	170999712	170999712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016228.3	-1	reviewed	p.P131H	1.000	266	0%	160	24.4%	3	66.6%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
GALNTL6	442117	genome.wustl.edu	37	4	172735833	172735833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001034845.2	+1	validated	p.K34N	1.000	337	0%	492	20.3%	0	-	possibly_damaging(0.888)	deleterious(0.03)	deleterious(0.712)	NULL
SAP30	8819	genome.wustl.edu	37	4	174295169	174295169	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003864.3	+1	reviewed	p.N174T	1.000	350	0%	406	21.2%	58	56.8%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
FBXO8	26269	genome.wustl.edu	37	4	175158594	175158594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012180.2	-1	reviewed	p.N310S	1.000	223	0%	99	16.2%	18	16.6%	probably_damaging(0.987)	tolerated(0.28)	neutral(0.468)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
HPGD	3248	genome.wustl.edu	37	4	175413214	175413214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000860.4	-1	reviewed	p.L232F	1.000	390	0%	244	23.8%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	superfamily_NAD(P)-bd
GLRA3	8001	genome.wustl.edu	37	4	175598318	175598318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006529.2	-1	validated	p.D280N	1.000	231	0%	93	25.8%	0	-	benign(0.422)	tolerated(0.26)	neutral(0.171)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
ADAM29	11086	genome.wustl.edu	37	4	175897402	175897402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130703.1	+1	reviewed	p.K242N	0.000	220	0.5%	56	19.6%	0	-	benign(0.081)	tolerated(0.62)	neutral(0.010)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
GPM6A	2823	genome.wustl.edu	37	4	176573098	176573098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005277.3	-1	validated	p.G143V	1.000	197	0%	88	21.6%	0	-	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	HMMPfam_Myelin_PLP
GPM6A	2823	genome.wustl.edu	37	4	176622762	176622762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005277.3	-1	validated	p.A65V	1.000	165	0%	73	21.9%	0	-	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_Myelin_PLP
SPATA4	132851	genome.wustl.edu	37	4	177113888	177113888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144644.2	-1	provisional	p.R193M	0.814	266	0%	247	19%	1	0%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_DUF1042
ASB5	140458	genome.wustl.edu	37	4	177138038	177138038	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080874.2	-1	reviewed	p.E265*	1.000	544	0%	231	28.6%	0	-	-	-	-	superfamily_Ankyrin repeat
ASB5	140458	genome.wustl.edu	37	4	177146493	177146493	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080874.2	-1	reviewed	e2-1	1.000	184	0%	115	27.8%	0	-	-	-	-	-
NEIL3	55247	genome.wustl.edu	37	4	178260995	178260995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018248.2	+1	validated	p.S229I	1.000	284	0.4%	125	15.2%	5	20%	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	superfamily_S13-like H2TH domain,HMMPfam_H2TH
AGA	175	genome.wustl.edu	37	4	178358577	178358577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000027.3	-1	reviewed	p.R202C	0.000	444	0%	461	20.4%	26	23%	benign(0.016)	tolerated(0.06)	neutral(0.323)	HMMPfam_Asparaginase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
ODZ3	55714	genome.wustl.edu	37	4	183650143	183650143	+	Silent	SNP	C	C	T	rs181078136	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080477.1	+1	provisional	p.P798	0.980	213	0%	96	24%	0	-	-	-	-	superfamily_ConA_like_lec_gl
ODZ3	55714	genome.wustl.edu	37	4	183713427	183713427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080477.1	+1	provisional	p.S1868T	1.000	84	0%	141	22%	0	-	benign(0.002)	tolerated(0.16)	neutral(0.059)	NULL
ODZ3	55714	genome.wustl.edu	37	4	183714417	183714417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080477.1	+1	provisional	p.R2198C	1.000	296	0%	300	23.7%	0	-	benign(0.044)	tolerated(0.11)	neutral(0.274)	NULL
DCTD	1635	genome.wustl.edu	37	4	183836077	183836077	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012732.1	-1	reviewed	p.Y92	0.840	325	0%	336	28%	85	10.5%	-	-	-	HMMPfam_dCMP_cyt_deam_1,superfamily_Cytidine_deaminase-like
LOC391722	391722	genome.wustl.edu	37	4	185220693	185220693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_373042.2	-1	model	p.E241D	1.000	371	0%	170	21.8%	2	0%	-	-	-	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
IRF2	3660	genome.wustl.edu	37	4	185329365	185329365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002199.3	-1	reviewed	p.A159V	1.000	383	0.5%	196	23.5%	34	2.9%	benign(0.1)	tolerated(0.28)	neutral(0.039)	NULL
CASP3	836	genome.wustl.edu	37	4	185550641	185550641	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004346.3	-1	reviewed	p.R207*	1.000	135	0%	63	27%	60	46.6%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
ACSL1	2180	genome.wustl.edu	37	4	185697653	185697653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001995.2	-1	reviewed	p.S247R	0.867	207	0%	85	23.5%	9	44.4%	probably_damaging(0.976)	tolerated(0.08)	deleterious(0.718)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSL1	2180	genome.wustl.edu	37	4	185724543	185724543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001995.2	-1	reviewed	p.F42L	1.000	191	0%	98	23.5%	9	66.6%	possibly_damaging(0.819)	tolerated(0.39)	neutral(0.326)	NULL
SLC25A4	291	genome.wustl.edu	37	4	186066045	186066045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001151.3	+1	reviewed	p.R80H	1.000	321	0%	385	25.7%	68	27.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SLC25A4	291	genome.wustl.edu	37	4	186066328	186066328	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001151.3	+1	reviewed	p.Y174	1.000	100	0%	158	24.1%	82	42.6%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SNX25	83891	genome.wustl.edu	37	4	186231801	186231801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031953.2	+1	validated	p.A228V	1.000	257	0%	109	20.2%	13	30.7%	benign(0.056)	tolerated(0.1)	neutral(0.290)	NULL
SNX25	83891	genome.wustl.edu	37	4	186241934	186241934	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031953.2	+1	validated	p.H300	0.994	440	0%	196	20.4%	6	50%	-	-	-	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
SNX25	83891	genome.wustl.edu	37	4	186260646	186260646	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031953.2	+1	validated	p.A512	0.581	125	0%	63	27%	7	57.1%	-	-	-	HMMPfam_PX,HMMSmart_PX,superfamily_PX
SNX25	83891	genome.wustl.edu	37	4	186263165	186263165	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031953.2	+1	validated	p.Y530*	1.000	363	0%	192	18.8%	11	27.2%	-	-	-	HMMPfam_PX,HMMSmart_PX,superfamily_PX
LRP2BP	55805	genome.wustl.edu	37	4	186294141	186294141	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018409.3	-1	validated	p.R224	0.772	213	0.5%	116	12.9%	1	0%	-	-	-	HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like
LRP2BP	55805	genome.wustl.edu	37	4	186298144	186298144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018409.3	-1	validated	p.K45N	0.770	432	0%	220	20.5%	0	-	possibly_damaging(0.546)	tolerated(0.27)	neutral(0.219)	NULL
UFSP2	55325	genome.wustl.edu	37	4	186336957	186336957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018359.3	-1	validated	p.I133T	1.000	270	0%	180	25%	23	52.1%	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
FAM149A	25854	genome.wustl.edu	37	4	187075773	187075773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001006655.2	+1	validated	p.A122T	1.000	369	0%	414	20%	15	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM149A	25854	genome.wustl.edu	37	4	187088146	187088146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001006655.2	+1	validated	p.R397C	0.005	132	0%	106	22.6%	29	51.7%	benign(0.007)	deleterious(0.02)	neutral(0.383)	NULL
CYP4V2	285440	genome.wustl.edu	37	4	187118184	187118184	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207352.3	+1	reviewed	p.E168	1.000	363	0%	385	20%	5	40%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
KLKB1	3818	genome.wustl.edu	37	4	187179181	187179181	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000892.3	+1	reviewed	p.S578A	1.000	166	0%	92	28.3%	1	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_SER
F11	2160	genome.wustl.edu	37	4	187205291	187205291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000128.3	+1	reviewed	p.S394Y	0.612	188	0%	159	11.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
FAT1	2195	genome.wustl.edu	37	4	187510244	187510244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005245.3	-1	reviewed	p.D4423E	1.000	238	0%	149	22.1%	177	51.9%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
FAT1	2195	genome.wustl.edu	37	4	187517826	187517826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005245.3	-1	reviewed	p.E4290K	1.000	203	0.5%	138	29%	109	40.3%	benign(0.196)	deleterious(0.04)	neutral(0.367)	NULL
FAT1	2195	genome.wustl.edu	37	4	187518042	187518042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005245.3	-1	reviewed	p.D4218Y	1.000	274	0%	166	15.1%	85	25.8%	benign(0.015)	tolerated(0.06)	neutral(0.323)	NULL
FAT1	2195	genome.wustl.edu	37	4	187532735	187532735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005245.3	-1	reviewed	p.V3220I	0.994	126	0%	65	15.4%	18	55.5%	possibly_damaging(0.447)	tolerated(0.48)	neutral(0.157)	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187541018	187541018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005245.3	-1	reviewed	p.P2241H	0.986	219	0%	75	17.3%	3	66.6%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187554940	187554940	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005245.3	-1	reviewed	p.G1407	0.998	415	0%	188	22.9%	1	100%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187557292	187557292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005245.3	-1	reviewed	p.S1357L	0.090	214	0%	109	16.5%	2	50%	benign(0.026)	tolerated(0.35)	neutral(0.022)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187627791	187627791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005245.3	-1	reviewed	p.R1064I	1.000	196	0%	160	29.4%	4	25%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187628079	187628079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005245.3	-1	reviewed	p.D968G	1.000	194	0%	143	29.4%	4	75%	probably_damaging(0.968)	deleterious(0.04)	deleterious(0.759)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187629167	187629167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005245.3	-1	reviewed	p.Q605H	0.997	188	0%	137	23.4%	2	50%	possibly_damaging(0.753)	deleterious(0.02)	deleterious(0.659)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187629862	187629862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005245.3	-1	reviewed	p.A374S	1.000	325	0%	308	23.4%	2	50%	benign(0.022)	deleterious(0)	neutral(0.446)	HMMPfam_Cadherin,superfamily_Cadherin-like
TUBB7P	56604	genome.wustl.edu	37	4	190905636	190905636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020040.3	-1	validated	p.Q43H	1.000	62	0%	56	25%	2	0%	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
PLEKHG4B	153478	genome.wustl.edu	37	5	161898	161898	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052909.3	+1	validated	p.Q474*	0.750	79	0%	68	30.9%	0	-	-	-	-	NULL
PLEKHG4B	153478	genome.wustl.edu	37	5	169626	169626	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052909.3	+1	validated	p.D860	1.000	82	0%	81	21%	0	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
SDHA	6389	genome.wustl.edu	37	5	226018	226018	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004168.2	+1	reviewed	p.P159	0.152	244	0%	212	20.8%	97	32.9%	-	-	-	HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain
SDHA	6389	genome.wustl.edu	37	5	228384	228384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004168.2	+1	reviewed	p.A236T	1.000	363	0%	383	12.3%	206	20.8%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain
SDHA	6389	genome.wustl.edu	37	5	235284	235284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004168.2	+1	reviewed	p.V364I	1.000	78	0%	57	21.1%	211	42.6%	benign(0.003)	tolerated(1)	-	HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain,superfamily_Succinate dehydrogenase/fumarate reductase flavoprotein catalytic domain
SDHA	6389	genome.wustl.edu	37	5	240475	240475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004168.2	+1	reviewed	p.D479N	1.000	150	0%	158	15.2%	169	40.8%	benign(0.343)	tolerated(0.1)	neutral(0.394)	superfamily_FAD/NAD(P)-binding domain
AHRR	57491	genome.wustl.edu	37	5	423956	423956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020731.3	+1	reviewed	p.G195E	1.000	46	0%	29	20.7%	1	0%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
AHRR	57491	genome.wustl.edu	37	5	434249	434249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020731.3	+1	reviewed	p.S487I	0.699	40	0%	56	12.5%	0	-	benign(0.009)	deleterious(0.01)	neutral(0.406)	NULL
EXOC3	11336	genome.wustl.edu	37	5	453896	453896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007277.4	+1	reviewed	p.R259K	1.000	204	0%	151	22.5%	35	37.1%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_Sec6
CEP72	55722	genome.wustl.edu	37	5	620290	620290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018140.3	+1	reviewed	p.V106A	0.999	200	0%	198	15.2%	11	54.5%	possibly_damaging(0.917)	deleterious(0.01)	deleterious(0.774)	superfamily_SSF52058
CEP72	55722	genome.wustl.edu	37	5	624597	624597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018140.3	+1	reviewed	p.V139M	0.997	81	0%	69	17.4%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52058
CEP72	55722	genome.wustl.edu	37	5	637688	637688	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018140.3	+1	reviewed	p.M321L	0.002	94	0%	113	18.6%	10	20%	benign(0.093)	tolerated(0.09)	neutral(0.303)	NULL
TPPP	11076	genome.wustl.edu	37	5	665308	665308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007030.2	-1	validated	p.A190V	0.994	111	0%	97	26.8%	4	25%	benign(0.263)	deleterious(0.03)	neutral(0.392)	HMMPfam_p25-alpha
TPPP	11076	genome.wustl.edu	37	5	677980	677980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007030.2	-1	validated	p.A66T	1.000	28	0%	27	14.8%	2	50%	benign(0.014)	tolerated(0.08)	neutral(0.300)	HMMPfam_p25-alpha
TRIP13	9319	genome.wustl.edu	37	5	912006	912006	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004237.3	+1	reviewed	p.I305	1.000	144	0%	162	25.9%	45	33.3%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC12A7	10723	genome.wustl.edu	37	5	1060510	1060510	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006598.2	-1	validated	p.R932	0.999	197	0%	300	17%	45	35.5%	-	-	-	NULL
TERT	7015	genome.wustl.edu	37	5	1255478	1255478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198253.2	-1	reviewed	p.K1027N	0.028	260	0%	198	25.8%	3	66.6%	benign(0.201)	tolerated(0.53)	neutral(0.026)	NULL
CLPTM1L	81037	genome.wustl.edu	37	5	1335227	1335227	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030782.3	-1	provisional	p.G247	0.575	60	0%	61	21.3%	99	32.3%	-	-	-	HMMPfam_CLPTM1
CLPTM1L	81037	genome.wustl.edu	37	5	1341901	1341901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030782.3	-1	provisional	p.A113D	0.994	232	0%	289	21.5%	86	43%	benign(0.009)	tolerated(0.51)	neutral(0.009)	HMMPfam_CLPTM1
SLC6A3	6531	genome.wustl.edu	37	5	1401090	1401090	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001044.4	-1	reviewed	p.Y593	0.947	90	0%	143	29.4%	0	-	-	-	-	HMMPfam_SNF
SLC6A3	6531	genome.wustl.edu	37	5	1411361	1411361	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001044.4	-1	reviewed	p.S422	0.118	41	0%	51	25.5%	0	-	-	-	-	HMMPfam_SNF
SLC6A3	6531	genome.wustl.edu	37	5	1411428	1411428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001044.4	-1	reviewed	p.T400M	0.998	50	0%	65	21.5%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_SNF
IRX4	50805	genome.wustl.edu	37	5	1879664	1879664	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016358.2	-1	validated	p.G230	0.000	69	0%	78	35.9%	0	-	-	-	-	NULL
IRX2	153572	genome.wustl.edu	37	5	2749749	2749749	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134222.1	-1	validated	p.N134	1.000	343	0%	332	25.6%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
C5orf38	153571	genome.wustl.edu	37	5	2752465	2752465	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178569.2	+1	provisional	p.A29	0.004	19	0%	22	40.9%	1	0%	-	-	-	NULL
C5orf38	153571	genome.wustl.edu	37	5	2752557	2752557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178569.2	+1	provisional	p.R60Q	0.001	27	0%	30	20%	0	-	unknown(0)	-	-	NULL
IRX1	79192	genome.wustl.edu	37	5	3599686	3599686	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024337.3	+1	validated	p.S208	1.000	110	0%	135	27.4%	0	-	-	-	-	NULL
IRX1	79192	genome.wustl.edu	37	5	3600227	3600227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024337.3	+1	validated	p.R389C	1.000	27	0%	35	37.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5191886	5191886	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139056.2	+1	reviewed	p.A432	0.984	276	0%	117	17.1%	2	100%	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAMTS16	170690	genome.wustl.edu	37	5	5235133	5235133	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139056.2	+1	reviewed	p.S619	0.004	48	0%	58	19%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS16	170690	genome.wustl.edu	37	5	5239298	5239298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139056.2	+1	reviewed	p.A730V	0.998	511	0%	252	25.4%	1	100%	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5462444	5462444	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015325.1	+1	validated	p.G999	0.000	95	1.1%	67	26.9%	3	66.6%	-	-	-	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5463952	5463952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015325.1	+1	validated	p.S1502N	0.006	114	0%	67	25.4%	1	100%	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5466585	5466585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015325.1	+1	validated	p.R2011C	0.990	587	0%	424	21.7%	11	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBE2QL1	134111	genome.wustl.edu	37	5	6491416	6491416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145161.1	+1	provisional	p.T147M	1.000	162	0%	66	21.2%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
NSUN2	54888	genome.wustl.edu	37	5	6620217	6620217	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017755.4	-1	validated	e7+2	1.000	251	0%	138	17.4%	0	-	-	-	-	-
LOC442132	442132	genome.wustl.edu	37	5	7302387	7302387	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_040018.2	-1	model	NULL	0.025	181	0%	152	19.1%	0	-	-	-	-	-
ADCY2	108	genome.wustl.edu	37	5	7757687	7757687	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020546.2	+1	reviewed	p.A694	0.294	91	0%	60	26.7%	0	-	-	-	-	NULL
MTRR	4552	genome.wustl.edu	37	5	7878283	7878283	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024010.2	+1	reviewed	p.N237Y	0.035	289	0%	224	21%	11	18.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MTRR	4552	genome.wustl.edu	37	5	7900042	7900042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024010.2	+1	reviewed	p.M683I	1.000	257	0%	76	17.1%	16	31.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
MTRR	4552	genome.wustl.edu	37	5	7900125	7900125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024010.2	+1	reviewed	p.A711V	0.998	260	0%	73	17.8%	14	50%	probably_damaging(0.999)	tolerated(0.44)	deleterious(0.503)	superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
SEMA5A	9037	genome.wustl.edu	37	5	9066649	9066649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003966.2	-1	reviewed	p.R728Q	1.000	187	0%	75	20%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SEMA5A	9037	genome.wustl.edu	37	5	9224912	9224912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003966.2	-1	reviewed	p.T174A	1.000	198	0.5%	100	17%	0	-	benign(0.003)	tolerated(0.15)	neutral(0.241)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
CCT5	22948	genome.wustl.edu	37	5	10262641	10262641	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012073.3	+1	reviewed	p.R410	1.000	471	0.2%	143	21%	451	31.4%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
MARCH6	10299	genome.wustl.edu	37	5	10414578	10414578	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005885.2	+1	provisional	p.L644V	0.746	828	0%	256	14.8%	35	28.5%	benign(0.166)	tolerated(0.43)	neutral(0.028)	NULL
ROPN1L	83853	genome.wustl.edu	37	5	10442411	10442411	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031916.3	+1	reviewed	e1+1	1.000	30	0%	22	36.4%	0	-	-	-	-	-
CTNND2	1501	genome.wustl.edu	37	5	10973708	10973708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001332.2	-1	validated	p.R1179C	1.000	197	0%	84	14.3%	1	0%	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	NULL
CTNND2	1501	genome.wustl.edu	37	5	11346502	11346502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001332.2	-1	validated	p.S537I	1.000	217	0%	189	22.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_ARM repeat
CTNND2	1501	genome.wustl.edu	37	5	11346684	11346684	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001332.2	-1	validated	p.H476	0.778	91	0%	48	35.4%	0	-	-	-	-	NULL
DNAH5	1767	genome.wustl.edu	37	5	13714703	13714703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001369.2	-1	reviewed	p.E4312D	1.000	91	0%	23	26.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Dynein_heavy
DNAH5	1767	genome.wustl.edu	37	5	13729569	13729569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001369.2	-1	reviewed	p.Q3954H	1.000	239	0%	66	10.6%	1	0%	benign(0.006)	tolerated(0.15)	neutral(0.241)	HMMPfam_Dynein_heavy
DNAH5	1767	genome.wustl.edu	37	5	13792282	13792282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001369.2	-1	reviewed	p.E2757K	0.997	257	0%	116	16.4%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	HMMSmart_AAA,superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13811853	13811853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001369.2	-1	reviewed	p.R2437H	1.000	174	0%	258	20.5%	0	-	benign(0.006)	tolerated(0.13)	neutral(0.253)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13865886	13865886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001369.2	-1	reviewed	p.Y1416H	1.000	238	0%	59	22%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
DNAH5	1767	genome.wustl.edu	37	5	13883102	13883102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001369.2	-1	reviewed	p.D1029Y	1.000	349	0.3%	168	19.6%	0	-	possibly_damaging(0.768)	deleterious(0.01)	deleterious(0.691)	NULL
LOC100289578	100289578	genome.wustl.edu	37	5	14297252	14297252	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342489.1	-1	model	p.R73*	0.590	142	0%	69	21.7%	2	0%	-	-	-	NULL
TRIO	7204	genome.wustl.edu	37	5	14364800	14364800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007118.2	+1	validated	p.R877W	0.992	186	0%	136	21.3%	1	100%	unknown(0)	deleterious(0)	-	superfamily_Spectrin repeat
TRIO	7204	genome.wustl.edu	37	5	14387715	14387715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007118.2	+1	validated	p.G1247R	1.000	315	0%	356	23%	8	50%	unknown(0)	tolerated(0.05)	-	NULL
TRIO	7204	genome.wustl.edu	37	5	14397162	14397162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007118.2	+1	validated	p.T1441M	1.000	433	0%	229	23.1%	5	20%	unknown(0)	deleterious(0.03)	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
TRIO	7204	genome.wustl.edu	37	5	14406051	14406051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007118.2	+1	validated	p.P1604L	1.000	46	0%	21	33.3%	1	0%	unknown(0)	deleterious(0)	-	NULL
TRIO	7204	genome.wustl.edu	37	5	14508111	14508111	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007118.2	+1	validated	p.F2958	0.993	226	0%	199	22.1%	28	46.4%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FAM105B	90268	genome.wustl.edu	37	5	14693038	14693038	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138348.4	+1	validated	p.E314*	1.000	230	0%	87	16.1%	18	44.4%	-	-	-	NULL
ANKH	56172	genome.wustl.edu	37	5	14711333	14711333	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_054027.4	-1	reviewed	p.I484	0.992	190	0%	144	19.4%	21	0%	-	-	-	NULL
ANKH	56172	genome.wustl.edu	37	5	14713076	14713076	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_054027.4	-1	reviewed	p.H424	0.216	24	0%	30	16.7%	7	0%	-	-	-	NULL
FBXL7	23194	genome.wustl.edu	37	5	15928122	15928122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012304.3	+1	reviewed	p.T84M	1.000	23	0%	40	27.5%	1	0%	probably_damaging(0.987)	deleterious(0.04)	deleterious(0.785)	NULL
FBXL7	23194	genome.wustl.edu	37	5	15928534	15928534	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012304.3	+1	reviewed	p.G221	1.000	144	0%	156	25%	1	0%	-	-	-	HMMSmart_SM00367,superfamily_RNI-like
ZNF622	90441	genome.wustl.edu	37	5	16451822	16451822	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033414.2	-1	provisional	p.G460*	1.000	481	0%	264	19.7%	73	46.5%	-	-	-	NULL
MYO10	4651	genome.wustl.edu	37	5	16668435	16668435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012334.2	-1	validated	p.T2009M	0.869	212	0%	117	21.4%	24	12.5%	possibly_damaging(0.874)	deleterious(0)	deleterious(0.784)	NULL
MYO10	4651	genome.wustl.edu	37	5	16675213	16675213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012334.2	-1	validated	p.K1571N	1.000	339	0%	157	24.2%	10	80%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMSmart_MyTH4
MYO10	4651	genome.wustl.edu	37	5	16676255	16676255	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012334.2	-1	validated	p.C1517*	1.000	479	0%	332	22.3%	15	6.6%	-	-	-	superfamily_SSF50729
MYO10	4651	genome.wustl.edu	37	5	16694687	16694687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012334.2	-1	validated	p.V1198A	1.000	126	0%	63	33.3%	8	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF50729
MYO10	4651	genome.wustl.edu	37	5	16769225	16769225	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012334.2	-1	validated	p.E340*	1.000	319	0%	131	15.3%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
CDH18	1016	genome.wustl.edu	37	5	19571773	19571773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004934.3	-1	reviewed	p.M390V	0.996	303	0%	107	17.8%	0	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	HMMPfam_Cadherin,superfamily_Cadherin
CDH12	1010	genome.wustl.edu	37	5	21751896	21751896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004061.3	-1	reviewed	p.A779T	1.000	312	0%	147	25.9%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Cadherin_C
PRDM9	56979	genome.wustl.edu	37	5	23527470	23527470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020227.2	+1	provisional	p.R758H	0.007	243	0%	64	12.5%	0	-	possibly_damaging(0.693)	deleterious(0.04)	deleterious(0.597)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CDH10	1008	genome.wustl.edu	37	5	24488023	24488023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006727.2	-1	reviewed	p.D706N	0.986	265	0%	88	20.5%	0	-	probably_damaging(0.957)	tolerated(0.39)	neutral(0.417)	HMMPfam_Cadherin_C
CDH10	1008	genome.wustl.edu	37	5	24493011	24493011	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006727.2	-1	reviewed	p.V513	0.974	304	0%	137	12.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH10	1008	genome.wustl.edu	37	5	24511480	24511480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006727.2	-1	reviewed	p.V320M	0.002	306	0%	122	12.3%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH10	1008	genome.wustl.edu	37	5	24535300	24535300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006727.2	-1	reviewed	p.Q245H	1.000	454	0%	180	23.3%	0	-	probably_damaging(0.979)	tolerated(0.39)	neutral(0.438)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH9	1007	genome.wustl.edu	37	5	26881547	26881547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016279.3	-1	reviewed	p.R690W	0.901	403	0%	186	21.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin_C
CDH9	1007	genome.wustl.edu	37	5	26881722	26881722	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016279.3	-1	reviewed	p.V631	0.998	129	0%	111	24.3%	0	-	-	-	-	NULL
CDH9	1007	genome.wustl.edu	37	5	26885735	26885735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016279.3	-1	reviewed	p.L624I	0.690	80	1.3%	34	17.6%	0	-	benign(0)	tolerated(0.76)	neutral(0.001)	NULL
CDH9	1007	genome.wustl.edu	37	5	26915851	26915851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016279.3	-1	reviewed	p.R137Q	0.129	249	0%	135	20.7%	0	-	benign(0.164)	tolerated(0.16)	neutral(0.074)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH6	1004	genome.wustl.edu	37	5	31299656	31299656	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004932.2	+1	reviewed	p.G243	1.000	336	0%	74	14.9%	9	44.4%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH6	1004	genome.wustl.edu	37	5	31322997	31322997	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004932.2	+1	reviewed	p.I652S	1.000	234	0%	172	18%	8	37.5%	possibly_damaging(0.596)	deleterious(0)	deleterious(0.650)	HMMPfam_Cadherin_C
DROSHA	29102	genome.wustl.edu	37	5	31526936	31526936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013235.4	-1	validated	p.R35M	0.997	130	0%	84	28.6%	5	40%	unknown(0)	deleterious(0)	-	NULL
PDZD2	23037	genome.wustl.edu	37	5	32000346	32000346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178140.2	+1	reviewed	p.T408M	0.981	244	0.8%	160	21.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PDZD2	23037	genome.wustl.edu	37	5	32087468	32087468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178140.2	+1	reviewed	p.T1305I	0.000	61	0%	43	20.9%	0	-	benign(0.327)	deleterious(0)	deleterious(0.547)	NULL
MTMR12	54545	genome.wustl.edu	37	5	32239137	32239137	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040446.1	-1	reviewed	p.C438	1.000	191	0%	110	25.5%	10	20%	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
MTMR12	54545	genome.wustl.edu	37	5	32239257	32239257	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040446.1	-1	reviewed	p.C398	1.000	154	0%	95	20%	13	53.8%	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
MTMR12	54545	genome.wustl.edu	37	5	32239270	32239270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040446.1	-1	reviewed	p.A394V	0.976	139	0%	84	23.8%	10	40%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_(Phosphotyrosine protein) phosphatases II
ZFR	51663	genome.wustl.edu	37	5	32385755	32385755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016107.3	-1	validated	p.V834I	1.000	404	0.2%	151	23.2%	31	32.2%	possibly_damaging(0.643)	tolerated(0.2)	neutral(0.275)	HMMPfam_DZF,HMMSmart_DZF
TARS	6897	genome.wustl.edu	37	5	33441204	33441204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152295.3	+1	reviewed	p.E4D	0.151	93	0%	108	29.6%	18	33.3%	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	NULL
ADAMTS12	81792	genome.wustl.edu	37	5	33549441	33549441	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030955.2	-1	reviewed	p.C1391	0.982	77	0%	40	22.5%	0	-	-	-	-	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS12	81792	genome.wustl.edu	37	5	33616101	33616101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030955.2	-1	reviewed	p.F740L	1.000	368	0%	129	24%	0	-	possibly_damaging(0.694)	deleterious(0.02)	deleterious(0.632)	HMMPfam_ADAM_spacer1
RXFP3	51289	genome.wustl.edu	37	5	33938066	33938066	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016568.3	+1	validated	p.I407	0.913	35	0%	31	16.1%	0	-	-	-	-	superfamily_SSF81321
RAI14	26064	genome.wustl.edu	37	5	34824168	34824168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145525.1	+1	validated	p.R744W	1.000	220	0%	139	22.3%	49	40.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TTC23L	153657	genome.wustl.edu	37	5	34896883	34896883	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144725.3	+1	validated	p.*362	0.003	194	0%	57	15.8%	0	-	-	-	-	NULL
RAD1	5810	genome.wustl.edu	37	5	34913579	34913579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002853.3	-1	reviewed	p.M101I	0.746	172	0%	170	17.1%	11	45.4%	benign(0)	tolerated(0.23)	neutral(0.042)	superfamily_DNA clamp
DNAJC21	134218	genome.wustl.edu	37	5	34937665	34937665	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194283.3	+1	validated	p.E225*	1.000	88	0%	106	27.4%	14	7.1%	-	-	-	NULL
SPEF2	79925	genome.wustl.edu	37	5	35704717	35704717	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024867.3	+1	validated	p.N820	0.000	362	0%	154	23.4%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
IL7R	3575	genome.wustl.edu	37	5	35867627	35867627	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000511982	+1	known	p.L147	0.010	116	0.9%	21	28.6%	0	-	-	-	-	NULL
IL7R	3575	genome.wustl.edu	37	5	35876396	35876396	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002185.2	+1	reviewed	p.N396	0.000	199	0%	112	17%	1	0%	-	-	-	NULL
CAPSL	133690	genome.wustl.edu	37	5	35910605	35910605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042625.1	-1	validated	p.D60N	1.000	285	0%	224	19.2%	2	0%	benign(0.014)	tolerated(0.89)	neutral(0.001)	HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_EF-hand
UGT3A1	133688	genome.wustl.edu	37	5	35965553	35965553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152404.3	-1	validated	p.P260S	0.994	333	0%	169	18.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SKP2	6502	genome.wustl.edu	37	5	36170448	36170448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005983.2	+1	reviewed	p.T225I	0.954	634	0%	204	24.5%	9	66.6%	possibly_damaging(0.851)	tolerated(0.28)	neutral(0.359)	HMMSmart_SM00367,superfamily_RNI-like
NADKD1	133686	genome.wustl.edu	37	5	36195337	36195337	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000502355	-1	known	p.E108*	1.000	762	0%	273	25.3%	12	33.3%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
SLC1A3	6507	genome.wustl.edu	37	5	36677225	36677225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004172.4	+1	reviewed	p.L267M	0.995	487	0%	231	16.9%	3	0%	probably_damaging(1)	tolerated(0.34)	deleterious(0.523)	HMMPfam_SDF
NIPBL	25836	genome.wustl.edu	37	5	36985963	36985963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133433.3	+1	reviewed	p.R894H	1.000	108	0%	71	28.2%	3	66.6%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	superfamily_ARM repeat
C5orf42	65250	genome.wustl.edu	37	5	37153878	37153878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023073.3	-1	predicted	p.F1623L	0.983	201	0%	139	23.7%	3	0%	benign(0.282)	tolerated(0.17)	neutral(0.145)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37221295	37221295	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000399674	-1	known	e15-1	0.009	12	0%	24	37.5%	0	-	-	-	-	-
C5orf42	65250	genome.wustl.edu	37	5	37238988	37238988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000508244	-1	known	p.K303N	1.000	199	0%	209	20.1%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37244687	37244687	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000508244	-1	known	p.L120	0.655	171	0%	190	25.3%	0	-	-	-	-	NULL
NUP155	9631	genome.wustl.edu	37	5	37310816	37310816	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153485.1	-1	reviewed	p.T822	0.998	213	0%	123	15.4%	9	11.1%	-	-	-	HMMPfam_Nucleoporin
WDR70	55100	genome.wustl.edu	37	5	37727060	37727060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018034.2	+1	provisional	p.T597I	1.000	183	0%	55	30.9%	47	46.8%	benign(0.044)	tolerated(0.2)	neutral(0.052)	NULL
EGFLAM	133584	genome.wustl.edu	37	5	38418224	38418224	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152403.2	+1	validated	p.S517	0.824	256	0%	92	19.6%	2	0%	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
EGFLAM	133584	genome.wustl.edu	37	5	38451481	38451481	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152403.2	+1	validated	p.L870	0.965	384	0%	276	20.7%	3	0%	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
LIFR	3977	genome.wustl.edu	37	5	38523529	38523529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127671.1	-1	reviewed	p.V185I	0.017	277	0%	110	16.4%	0	-	possibly_damaging(0.849)	tolerated(0.34)	neutral(0.349)	NULL
RICTOR	253260	genome.wustl.edu	37	5	39021230	39021230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152756.3	-1	validated	p.D36N	1.000	345	0%	236	22.5%	0	-	benign(0.215)	deleterious(0.01)	neutral(0.427)	superfamily_ARM repeat
FYB	2533	genome.wustl.edu	37	5	39201985	39201985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001465.3	-1	validated	p.P360S	1.000	627	0%	279	24.7%	11	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
FYB	2533	genome.wustl.edu	37	5	39202599	39202599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001465.3	-1	validated	p.S155Y	0.682	349	0%	194	25.8%	12	0%	unknown(0)	deleterious(0.02)	-	NULL
C9	735	genome.wustl.edu	37	5	39311424	39311424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001737.3	-1	reviewed	p.R309I	1.000	440	0%	112	22.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MACPF,HMMSmart_MACPF
C9	735	genome.wustl.edu	37	5	39315907	39315907	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001737.3	-1	reviewed	p.Y280	0.003	311	0%	91	13.2%	0	-	-	-	-	HMMPfam_MACPF
DAB2	1601	genome.wustl.edu	37	5	39377263	39377263	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001343.2	-1	validated	p.Q542	0.964	112	0%	52	15.4%	17	0%	-	-	-	NULL
DAB2	1601	genome.wustl.edu	37	5	39390578	39390578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001343.2	-1	validated	p.H144Y	1.000	184	0%	73	24.7%	9	0%	possibly_damaging(0.935)	tolerated(0.11)	deleterious(0.652)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
PTGER4	5734	genome.wustl.edu	37	5	40681528	40681528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000958.2	+1	reviewed	p.A145T	0.375	30	0%	39	41%	2	0%	benign(0.007)	tolerated(0.19)	neutral(0.050)	HMMPfam_7tm_1,superfamily_SSF81321
CARD6	84674	genome.wustl.edu	37	5	40843580	40843580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032587.3	+1	reviewed	p.D204N	1.000	122	0%	81	17.3%	0	-	benign(0.025)	deleterious(0)	neutral(0.446)	NULL
CARD6	84674	genome.wustl.edu	37	5	40853667	40853667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032587.3	+1	reviewed	p.V745I	0.000	144	0%	33	12.1%	3	0%	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	NULL
HEATR7B2	133558	genome.wustl.edu	37	5	41004951	41004951	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173489.4	-1	validated	p.A1312	0.999	283	0%	78	10.3%	0	-	-	-	-	superfamily_ARM repeat
HEATR7B2	133558	genome.wustl.edu	37	5	41018843	41018843	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173489.4	-1	validated	p.T875A	0.625	355	0%	132	22.7%	0	-	benign(0.307)	tolerated(0.51)	neutral(0.104)	superfamily_ARM repeat
OXCT1	5019	genome.wustl.edu	37	5	41850134	41850134	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000436.3	-1	reviewed	p.E188*	1.000	339	0%	79	21.5%	2	0%	-	-	-	HMMPfam_CoA_trans,superfamily_SSF100950
FBXO4	26272	genome.wustl.edu	37	5	41934123	41934123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012176.2	+1	reviewed	p.R241I	1.000	470	0%	459	26.6%	27	29.6%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SEPP1	6414	genome.wustl.edu	37	5	42807075	42807075	+	Silent	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001093726.1	-1	reviewed	p.V143	0.995	435	0%	320	20.3%	27	37%	-	-	-	HMMPfam_SelP_N
ANXA2R	389289	genome.wustl.edu	37	5	43039778	43039778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014279.2	-1	validated	p.S124I	0.000	159	0%	168	24.4%	25	24%	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
HMGCS1	3157	genome.wustl.edu	37	5	43295938	43295938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098272.1	-1	validated	p.S274F	1.000	362	0%	104	17.3%	18	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like
HMGCS1	3157	genome.wustl.edu	37	5	43297114	43297114	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098272.1	-1	validated	p.Q243	0.995	341	0%	116	21.6%	11	27.2%	-	-	-	HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like
PAIP1	10605	genome.wustl.edu	37	5	43527543	43527543	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000514514	-1	known	p.W348*	1.000	534	0%	614	17.9%	43	4.6%	-	-	-	NULL
PAIP1	10605	genome.wustl.edu	37	5	43535703	43535703	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006451.4	-1	reviewed	p.G338*	1.000	815	0%	615	19.3%	42	2.3%	-	-	-	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
NNT	23530	genome.wustl.edu	37	5	43653190	43653190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012343.3	+1	reviewed	p.R645H	1.000	194	0%	144	18.8%	27	59.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PNTB
MRPS30	10884	genome.wustl.edu	37	5	44815294	44815294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016640.3	+1	reviewed	p.L437S	0.549	126	0%	106	28.3%	85	41.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
HCN1	348980	genome.wustl.edu	37	5	45645385	45645385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021072.2	-1	validated	p.A251S	1.000	148	0%	65	10.8%	0	-	benign(0.149)	tolerated(0.11)	neutral(0.285)	HMMPfam_Ion_trans,superfamily_SSF81324
EMB	133418	genome.wustl.edu	37	5	49699156	49699156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198449.2	-1	reviewed	p.E245K	0.997	365	0%	101	25.7%	15	6.6%	benign(0.111)	tolerated(0.66)	neutral(0.011)	HMMSmart_SM00409,superfamily_Immunoglobulin
PARP8	79668	genome.wustl.edu	37	5	50091088	50091088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024615.3	+1	validated	p.G422E	0.991	184	0%	128	26.6%	18	44.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PARP8	79668	genome.wustl.edu	37	5	50091162	50091162	+	Nonsense_Mutation	SNP	G	G	T	rs182814465	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024615.3	+1	validated	p.E447*	1.000	159	0%	113	23%	28	14.2%	-	-	-	NULL
ITGA1	3672	genome.wustl.edu	37	5	52206122	52206122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181501.1	+1	reviewed	p.A577V	1.000	172	0%	97	21.6%	3	0%	probably_damaging(0.955)	tolerated(0.09)	deleterious(0.695)	HMMPfam_FG-GAP,HMMSmart_Int_alpha,superfamily_SSF69318
FST	10468	genome.wustl.edu	37	5	52779410	52779410	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013409.1	+1	reviewed	p.C118	0.930	194	0%	168	28.6%	0	-	-	-	-	HMMPfam_Kazal_1,HMMSmart_SM00280,superfamily_Kazal-type serine protease inhibitors
MIR581	693166	genome.wustl.edu	37	5	53247414	53247414	+	RNA	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000384895	-1	known	NULL	0.000	163	0%	55	25.5%	0	-	-	-	-	-
ARL15	54622	genome.wustl.edu	37	5	53450419	53450419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019087.2	-1	validated	p.E82K	1.000	212	0%	128	15.6%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arf,superfamily_SSF52540
SNX18	112574	genome.wustl.edu	37	5	53814861	53814861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052870.2	+1	reviewed	p.M360T	1.000	29	0%	29	24.1%	5	40%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
GZMK	3003	genome.wustl.edu	37	5	54320601	54320601	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002104.2	+1	reviewed	p.Q60*	0.466	86	0%	45	28.9%	42	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CCNO	10309	genome.wustl.edu	37	5	54527311	54527311	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021147.3	-1	validated	p.D315	1.000	62	0%	72	18.1%	43	55.8%	-	-	-	HMMSmart_SM00385,superfamily_Cyclin-like
LOC100288375	100288375	genome.wustl.edu	37	5	54528231	54528231	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342533.1	+1	model	p.E39*	1.000	69	0%	86	10.5%	60	8.3%	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	NULL
SKIV2L2	23517	genome.wustl.edu	37	5	54649009	54649009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015360.4	+1	validated	p.T482M	1.000	201	0%	62	24.2%	15	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
PPAP2A	8611	genome.wustl.edu	37	5	54786889	54786889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176895.1	-1	reviewed	p.G38C	1.000	232	0%	74	16.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
IL31RA	133396	genome.wustl.edu	37	5	55178965	55178965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139017.4	+1	validated	p.P183L	0.002	378	0%	169	18.3%	1	0%	possibly_damaging(0.811)	tolerated(0.08)	deleterious(0.605)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
ANKRD55	79722	genome.wustl.edu	37	5	55407499	55407499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024669.2	-1	validated	p.R359K	0.427	425	0%	230	21.7%	0	-	benign(0.001)	tolerated(1)	-	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56176590	56176590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005921.1	+1	validated	p.A714T	1.000	365	0%	147	15%	9	33.3%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56179442	56179442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005921.1	+1	validated	p.G1252E	1.000	472	0%	161	22.4%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
GPBP1	65056	genome.wustl.edu	37	5	56542200	56542200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127235.2	+1	validated	p.Q204H	1.000	242	0%	164	17.1%	54	46.2%	possibly_damaging(0.91)	tolerated(0.13)	deleterious(0.615)	NULL
GAPT	202309	genome.wustl.edu	37	5	57790631	57790631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152687.2	+1	provisional	p.H90Y	0.000	184	0%	60	20%	1	0%	possibly_damaging(0.846)	deleterious(0)	deleterious(0.770)	NULL
GAPT	202309	genome.wustl.edu	37	5	57790782	57790782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152687.2	+1	provisional	p.R140H	0.000	66	1.5%	20	35%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
PDE4D	5144	genome.wustl.edu	37	5	58287699	58287699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001104631.1	-1	validated	p.R383M	1.000	418	0.2%	165	23.6%	0	-	benign(0.028)	tolerated(0.07)	neutral(0.321)	superfamily_HD-domain/PDEase-like
PDE4D	5144	genome.wustl.edu	37	5	59284472	59284472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000502484	-1	known	p.R39W	0.883	342	0.3%	91	24.2%	1	100%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
DEPDC1B	55789	genome.wustl.edu	37	5	59940620	59940620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018369.2	-1	validated	p.V221I	0.887	355	0%	162	18.5%	5	0%	benign(0.004)	tolerated(0.6)	neutral(0.004)	superfamily_GTPase activation domain GAP
NDUFAF2	91942	genome.wustl.edu	37	5	60448575	60448575	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174889.4	+1	reviewed	p.K101N	0.995	55	0%	57	12.3%	68	33.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_NDUFA12
ZSWIM6	57688	genome.wustl.edu	37	5	60839364	60839364	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020928.1	+1	provisional	p.T956	0.570	121	0%	42	16.7%	7	57.1%	-	-	-	NULL
HTR1A	3350	genome.wustl.edu	37	5	63256621	63256621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000524.2	-1	validated	p.S309I	1.000	37	0%	43	18.6%	0	-	benign(0.121)	tolerated(0.2)	neutral(0.059)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RNF180	285671	genome.wustl.edu	37	5	63509662	63509662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113561.1	+1	validated	p.R170Q	0.975	134	0%	71	16.9%	0	-	benign(0.001)	tolerated(0.47)	neutral(0.011)	NULL
CWC27	10283	genome.wustl.edu	37	5	64079759	64079759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005869.2	+1	validated	p.L117M	0.037	202	0%	114	22.8%	39	43.5%	probably_damaging(0.992)	tolerated(0.13)	deleterious(0.700)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
ERBB2IP	55914	genome.wustl.edu	37	5	65349668	65349668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018695.2	+1	reviewed	p.S841N	0.001	108	0%	27	29.6%	18	38.8%	benign(0.007)	deleterious(0.01)	neutral(0.406)	NULL
SREK1	140890	genome.wustl.edu	37	5	65466736	65466736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077199.1	+1	validated	p.R482M	1.000	276	0%	66	22.7%	12	33.3%	-	-	-	superfamily_SSF54928
MAST4	375449	genome.wustl.edu	37	5	66459541	66459541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015183.2	+1	validated	p.R1323C	1.000	28	0%	22	18.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAST4	375449	genome.wustl.edu	37	5	66460008	66460008	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000443808	+1	known	p.L724I	0.000	30	0%	42	16.7%	1	0%	-	-	-	NULL
MAST4	375449	genome.wustl.edu	37	5	66460565	66460565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015183.2	+1	validated	p.T1664I	0.000	123	0%	166	22.3%	2	0%	benign(0.006)	deleterious(0)	neutral(0.445)	NULL
MAST4	375449	genome.wustl.edu	37	5	66461336	66461336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015183.2	+1	validated	p.S1921Y	0.060	56	0%	60	33.3%	5	20%	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	NULL
CD180	4064	genome.wustl.edu	37	5	66478967	66478967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005582.2	-1	validated	p.Q568H	1.000	254	0%	95	15.8%	12	0%	benign(0.002)	tolerated(0.28)	neutral(0.032)	superfamily_L domain-like
PIK3R1	5295	genome.wustl.edu	37	5	67588951	67588951	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181523.1	+1	reviewed	p.R348*	1.000	344	0%	332	46.4%	4	75%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
SLC30A5	64924	genome.wustl.edu	37	5	68419214	68419214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022902.2	+1	provisional	p.P654S	1.000	248	0%	169	21.3%	47	46.8%	benign(0.418)	deleterious(0.04)	deleterious(0.484)	HMMPfam_Cation_efflux
CCNB1	891	genome.wustl.edu	37	5	68471358	68471358	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031966.2	+1	reviewed	p.G359	1.000	316	0%	270	23%	321	48.2%	-	-	-	HMMPfam_Cyclin_C,HMMSmart_CYCLIN,superfamily_Cyclin_like
CDK7	1022	genome.wustl.edu	37	5	68572518	68572518	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001799.3	+1	validated	e11+1	1.000	202	0%	120	30%	13	100%	-	-	-	-
RAD17	5884	genome.wustl.edu	37	5	68687730	68687730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133339.1	+1	reviewed	p.R371Q	0.682	117	0.9%	114	20.2%	8	75%	benign(0.001)	tolerated(0.48)	neutral(0.011)	HMMPfam_Rad17
MARVELD2	153562	genome.wustl.edu	37	5	68715620	68715620	+	Silent	SNP	C	C	A	rs34291091		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001038603.2	+1	validated	p.P136	0.000	117	0%	116	19.8%	6	83.3%	-	-	-	NULL
GTF2H2D	730394	genome.wustl.edu	37	5	68874889	68874889	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042490.3	+1	provisional	p.L201	1.000	339	0%	210	16.7%	17	29.4%	-	-	-	HMMSmart_SM00327,HMMPfam_Ssl1,superfamily_vWA-like
BDP1	55814	genome.wustl.edu	37	5	70782445	70782445	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018429.2	+1	reviewed	p.N402Y	0.960	178	0%	109	14.7%	1	0%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	NULL
BDP1	55814	genome.wustl.edu	37	5	70818603	70818603	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018429.2	+1	reviewed	p.T1738	0.002	168	0%	214	23.4%	1	0%	-	-	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71491521	71491521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005909.3	+1	validated	p.G780V	0.982	61	0%	30	26.7%	0	-	unknown(0)	deleterious(0.03)	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71493590	71493590	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005909.3	+1	validated	p.E1470*	1.000	164	0%	74	16.2%	0	-	-	-	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71494131	71494131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005909.3	+1	validated	p.G1650D	1.000	230	0%	101	17.8%	0	-	unknown(0)	deleterious(0.02)	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71495575	71495575	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005909.3	+1	validated	p.P2131	0.861	94	1.1%	57	17.5%	0	-	-	-	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71495815	71495815	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005909.3	+1	validated	p.S2211	0.902	108	0%	47	21.3%	1	0%	-	-	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71496127	71496127	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005909.3	+1	validated	p.E2315	1.000	205	0%	60	21.7%	0	-	-	-	-	NULL
MRPS27	23107	genome.wustl.edu	37	5	71528354	71528354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015084.2	-1	reviewed	p.M169I	0.998	289	0%	58	29.3%	31	38.7%	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMPfam_MRP-S27
ZNF366	167465	genome.wustl.edu	37	5	71752337	71752337	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152625.1	-1	provisional	p.N473T	1.000	398	0.3%	310	20%	0	-	possibly_damaging(0.773)	deleterious(0.02)	deleterious(0.670)	superfamily_C2H2 and C2HC zinc fingers
ZNF366	167465	genome.wustl.edu	37	5	71756435	71756435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152625.1	-1	provisional	p.H297Y	1.000	67	0%	70	25.7%	0	-	possibly_damaging(0.948)	tolerated(0.22)	neutral(0.433)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TNPO1	3842	genome.wustl.edu	37	5	72178958	72178958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002270.3	+1	reviewed	p.S350L	1.000	205	0%	94	17%	22	31.8%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_ARM repeat
TNPO1	3842	genome.wustl.edu	37	5	72192302	72192302	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002270.3	+1	reviewed	p.L721	1.000	262	0%	86	20.9%	27	48.1%	-	-	-	superfamily_ARM repeat
TNPO1	3842	genome.wustl.edu	37	5	72201175	72201175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002270.3	+1	reviewed	p.R879C	1.000	507	0%	198	19.2%	13	38.4%	possibly_damaging(0.781)	deleterious(0.05)	deleterious(0.638)	superfamily_ARM repeat
RGNEF	64283	genome.wustl.edu	37	5	73048987	73048987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080479.2	+1	reviewed	p.L145F	1.000	112	0%	70	12.9%	1	100%	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	NULL
RGNEF	64283	genome.wustl.edu	37	5	73069713	73069713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080479.2	+1	reviewed	p.A170D	0.523	318	0%	141	24.1%	0	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
RGNEF	64283	genome.wustl.edu	37	5	73181735	73181735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080479.2	+1	reviewed	p.A1039V	1.000	212	0%	104	25%	4	0%	probably_damaging(0.991)	tolerated(0.16)	deleterious(0.504)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
RGNEF	64283	genome.wustl.edu	37	5	73189114	73189114	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080479.2	+1	reviewed	e27+1	1.000	272	0%	145	24.1%	1	0%	-	-	-	-
ENC1	8507	genome.wustl.edu	37	5	73930855	73930855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003633.2	-1	validated	p.A486S	0.998	55	0%	56	26.8%	15	33.3%	benign(0.048)	tolerated(0.36)	neutral(0.023)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
FAM169A	26049	genome.wustl.edu	37	5	74091944	74091944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015566.1	-1	validated	p.G391W	0.699	623	0%	483	17%	1	100%	possibly_damaging(0.626)	deleterious(0.03)	deleterious(0.583)	NULL
ANKRD31	256006	genome.wustl.edu	37	5	74491503	74491503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000274361	-1	known	p.E324K	0.001	420	0.2%	112	23.2%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
POLK	51426	genome.wustl.edu	37	5	74892378	74892378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016218.2	+1	validated	p.Q620H	0.391	150	0%	66	19.7%	14	21.4%	unknown(0)	deleterious(0)	-	NULL
POLK	51426	genome.wustl.edu	37	5	74892932	74892932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016218.2	+1	validated	p.S805N	0.625	181	0%	107	22.4%	10	70%	unknown(0)	deleterious(0)	-	NULL
SV2C	22987	genome.wustl.edu	37	5	75490838	75490838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014979.1	+1	provisional	p.M225I	1.000	920	0.1%	528	22%	0	-	benign(0.406)	deleterious(0.02)	deleterious(0.514)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
IQGAP2	10788	genome.wustl.edu	37	5	75932870	75932870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006633.2	+1	validated	p.G598S	0.999	490	0%	160	19.4%	2	50%	benign(0.002)	tolerated(1)	-	NULL
IQGAP2	10788	genome.wustl.edu	37	5	75936928	75936928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006633.2	+1	validated	p.Q698H	1.000	162	0%	52	17.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
IQGAP2	10788	genome.wustl.edu	37	5	75998377	75998377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006633.2	+1	validated	p.L1526I	1.000	593	0%	315	26.3%	25	36%	probably_damaging(0.989)	tolerated(0.15)	deleterious(0.680)	NULL
F2R	2149	genome.wustl.edu	37	5	76028608	76028608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001992.3	+1	reviewed	p.M186I	1.000	203	0%	111	27.9%	13	15.3%	possibly_damaging(0.749)	deleterious(0)	deleterious(0.720)	HMMPfam_7tm_1,superfamily_SSF81321
LOC100287744	100287744	genome.wustl.edu	37	5	76128606	76128606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342529.1	-1	model	p.D170Y	0.103	376	0%	181	13.3%	5	0%	-	-	-	NULL
CRHBP	1393	genome.wustl.edu	37	5	76251570	76251570	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001882.3	+1	reviewed	p.E142	0.979	230	0%	228	20.6%	0	-	-	-	-	superfamily_Spermadhesin CUB domain,HMMPfam_CRF-BP
PDE8B	8622	genome.wustl.edu	37	5	76649185	76649185	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003719.2	+1	validated	p.F374C	1.000	443	0%	151	26.5%	0	-	benign(0.027)	tolerated(0.13)	neutral(0.254)	HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)
AP3B1	8546	genome.wustl.edu	37	5	77523196	77523196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003664.3	-1	reviewed	p.S179N	1.000	315	0%	124	23.4%	8	0%	benign(0.176)	deleterious(0.04)	neutral(0.365)	HMMPfam_Adaptin_N,superfamily_ARM repeat
SCAMP1	9522	genome.wustl.edu	37	5	77684700	77684700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000509998	+1	known	p.G33R	1.000	209	0%	399	20.3%	13	69.2%	-	-	-	NULL
BHMT2	23743	genome.wustl.edu	37	5	78379054	78379054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017614.4	+1	reviewed	p.D213G	0.000	99	0%	85	20%	0	-	benign(0.016)	tolerated(0.35)	neutral(0.021)	HMMPfam_S-methyl_trans,superfamily_S_methyl_trans
JMY	133746	genome.wustl.edu	37	5	78573877	78573877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152405.4	+1	validated	p.L393I	1.000	160	0%	83	25.3%	3	33.3%	possibly_damaging(0.88)	deleterious(0.04)	deleterious(0.692)	NULL
JMY	133746	genome.wustl.edu	37	5	78608310	78608310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152405.4	+1	validated	p.T685A	0.940	223	0%	91	18.7%	3	33.3%	benign(0.081)	tolerated(0.37)	neutral(0.025)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79025258	79025258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153610.3	+1	validated	p.T224A	1.000	139	0%	45	24.4%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79027746	79027746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153610.3	+1	validated	p.P1053H	0.036	123	0%	43	34.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79031112	79031112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153610.3	+1	validated	p.I2175T	1.000	78	0%	16	25%	0	-	benign(0.042)	deleterious(0)	neutral(0.447)	NULL
THBS4	7060	genome.wustl.edu	37	5	79366161	79366161	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003248.4	+1	reviewed	p.I460	0.998	212	0%	144	23.6%	5	20%	-	-	-	HMMSmart_EGF,PatternScan_EGF_2
THBS4	7060	genome.wustl.edu	37	5	79366562	79366562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003248.4	+1	reviewed	p.L517M	0.101	130	0%	104	28.8%	6	0%	benign(0.245)	tolerated(0.13)	neutral(0.278)	HMMPfam_TSP_3,superfamily_SSF103647
THBS4	7060	genome.wustl.edu	37	5	79369116	79369116	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003248.4	+1	reviewed	p.L620	1.000	313	0%	180	26.1%	11	9%	-	-	-	HMMPfam_TSP_3,superfamily_SSF103647
SPZ1	84654	genome.wustl.edu	37	5	79617289	79617289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032567.3	+1	validated	p.L419I	0.022	73	0%	64	23.4%	0	-	probably_damaging(0.996)	tolerated(0.3)	deleterious(0.490)	NULL
RASGRF2	5924	genome.wustl.edu	37	5	80508286	80508286	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006909.1	+1	validated	p.C1086	1.000	128	0%	46	28.3%	2	0%	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
RASGRF2	5924	genome.wustl.edu	37	5	80521539	80521539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006909.1	+1	validated	p.D1222Y	1.000	282	0%	154	29.9%	1	0%	possibly_damaging(0.872)	deleterious(0)	deleterious(0.784)	HMMSmart_SM00147,superfamily_Ras GEF
ZCCHC9	84240	genome.wustl.edu	37	5	80600941	80600941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001131035.1	+1	validated	p.A122V	0.306	96	0%	99	23.2%	27	29.6%	benign(0.055)	tolerated(0.29)	neutral(0.033)	superfamily_Retrovirus zinc finger-like domains
ACOT12	134526	genome.wustl.edu	37	5	80640015	80640015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130767.2	-1	validated	p.R315Q	0.173	149	0%	104	15.4%	0	-	benign(0.012)	tolerated(0.83)	neutral(0.001)	superfamily_Thioesterase/thiol ester dehydrase-isomerase
ACOT12	134526	genome.wustl.edu	37	5	80643593	80643593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130767.2	-1	validated	p.S218I	1.000	150	0%	59	28.8%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_4HBT,superfamily_Thioesterase/thiol ester dehydrase-isomerase
SSBP2	23635	genome.wustl.edu	37	5	80736402	80736402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012446.2	-1	validated	p.E301D	1.000	300	0%	322	11.2%	27	18.5%	benign(0.059)	tolerated(0.19)	neutral(0.054)	NULL
XRCC4	7518	genome.wustl.edu	37	5	82406986	82406986	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022406.2	+1	reviewed	p.C93	0.765	305	0%	214	21%	7	28.5%	-	-	-	superfamily_XRCC4 N-terminal domain,HMMPfam_XRCC4
VCAN	1462	genome.wustl.edu	37	5	82786060	82786060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004385.4	+1	reviewed	p.D72N	1.000	150	0%	46	19.6%	0	-	possibly_damaging(0.671)	tolerated(0.06)	deleterious(0.560)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
VCAN	1462	genome.wustl.edu	37	5	82815656	82815656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004385.4	+1	reviewed	p.K511E	0.601	250	0%	132	22%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
VCAN	1462	genome.wustl.edu	37	5	82816982	82816982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004385.4	+1	reviewed	p.A953S	0.027	162	0%	81	18.5%	2	0%	benign(0.039)	tolerated(0.05)	neutral(0.347)	NULL
VCAN	1462	genome.wustl.edu	37	5	82833114	82833114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004385.4	+1	reviewed	p.R1431H	1.000	86	0%	27	29.6%	0	-	probably_damaging(1)	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82833247	82833247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004385.4	+1	reviewed	p.E1475D	0.007	147	0%	47	19.1%	0	-	probably_damaging(0.985)	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82834425	82834425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004385.4	+1	reviewed	p.G1868D	0.009	124	0%	36	13.9%	1	0%	probably_damaging(1)	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82838073	82838073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004385.4	+1	reviewed	p.A3084E	1.000	316	0%	71	15.5%	7	0%	probably_damaging(0.997)	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82876131	82876131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004385.4	+1	reviewed	p.A3357T	1.000	271	0%	73	19.2%	16	6.2%	possibly_damaging(0.842)	tolerated(1)	neutral(0.322)	NULL
NBPF22P	285622	genome.wustl.edu	37	5	85578762	85578762	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000380134	+1	known	NULL	0.463	652	0%	159	24.5%	0	-	-	-	-	-
RASA1	5921	genome.wustl.edu	37	5	86633867	86633867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002890.1	+1	reviewed	p.D326Y	1.000	496	0%	110	25.5%	4	25%	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain
RASA1	5921	genome.wustl.edu	37	5	86681180	86681180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002890.1	+1	reviewed	p.A941S	1.000	386	0%	109	19.3%	18	44.4%	possibly_damaging(0.838)	deleterious(0)	deleterious(0.764)	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
TMEM161B	153396	genome.wustl.edu	37	5	87536683	87536683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153354.3	-1	provisional	p.M18I	1.000	203	0%	72	29.2%	6	50%	benign(0)	tolerated(0.99)	-	HMMPfam_Tmemb_161AB
MEF2C	4208	genome.wustl.edu	37	5	88047683	88047683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002397.3	-1	validated	p.G194C	1.000	320	0%	196	22.4%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CETN3	1070	genome.wustl.edu	37	5	89695262	89695262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004365.2	-1	reviewed	p.R125C	1.000	589	0%	356	18%	49	48.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
GPR98	84059	genome.wustl.edu	37	5	89913743	89913743	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032119.3	+1	reviewed	p.E110D	1.000	310	0%	126	20.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	89923523	89923523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032119.3	+1	reviewed	p.Y390H	0.931	133	0%	75	14.7%	0	-	benign(0.002)	tolerated(0.49)	neutral(0.011)	NULL
GPR98	84059	genome.wustl.edu	37	5	89990146	89990146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032119.3	+1	reviewed	p.S2525P	0.994	317	0%	115	25.2%	1	0%	benign(0.001)	tolerated(0.73)	neutral(0.002)	NULL
GPR98	84059	genome.wustl.edu	37	5	90087023	90087023	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032119.3	+1	reviewed	p.T4793S	0.012	321	0%	69	21.7%	0	-	benign(0.228)	tolerated(0.35)	neutral(0.043)	NULL
GPR98	84059	genome.wustl.edu	37	5	90261339	90261339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032119.3	+1	reviewed	p.M5988I	1.000	299	0%	200	21.5%	0	-	possibly_damaging(0.865)	deleterious(0.04)	deleterious(0.684)	NULL
GPR98	84059	genome.wustl.edu	37	5	90368279	90368279	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032119.3	+1	reviewed	p.N6056	0.993	618	0%	201	16.4%	0	-	-	-	-	NULL
KIAA0825	285600	genome.wustl.edu	37	5	93489755	93489755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145678.1	-1	validated	p.T1262I	0.153	1209	0%	1056	19.6%	0	-	possibly_damaging(0.919)	deleterious(0)	deleterious(0.814)	NULL
KIAA0825	285600	genome.wustl.edu	37	5	93732010	93732010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145678.1	-1	validated	p.T1031I	1.000	235	0%	82	29.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ANKRD32	84250	genome.wustl.edu	37	5	94030537	94030537	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032290.3	+1	validated	p.G899	1.000	260	0%	124	24.2%	15	40%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
MCTP1	79772	genome.wustl.edu	37	5	94206652	94206652	+	Silent	SNP	G	G	A	rs137979343	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024717.4	-1	validated	p.Y722	1.000	433	0%	101	13.9%	2	0%	-	-	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
MCTP1	79772	genome.wustl.edu	37	5	94248638	94248638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024717.4	-1	validated	p.S465L	1.000	357	0.6%	106	19.8%	0	-	benign(0.11)	deleterious(0.01)	neutral(0.414)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
FAM81B	153643	genome.wustl.edu	37	5	94756051	94756051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152548.2	+1	validated	p.E201K	1.000	204	0%	103	21.4%	9	11.1%	benign(0.026)	tolerated(0.52)	neutral(0.010)	NULL
FAM81B	153643	genome.wustl.edu	37	5	94772588	94772588	+	Missense_Mutation	SNP	G	G	A	rs148381850	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152548.2	+1	validated	p.E291K	0.995	174	0%	66	16.7%	6	33.3%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
TTC37	9652	genome.wustl.edu	37	5	94877552	94877552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014639.2	-1	provisional	p.G98D	0.975	319	0%	314	21.3%	6	50%	benign(0.002)	tolerated(0.75)	neutral(0.002)	superfamily_SSF48452
ARSK	153642	genome.wustl.edu	37	5	94918775	94918775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198150.2	+1	validated	p.A191V	0.914	265	0%	135	18.5%	2	0%	possibly_damaging(0.869)	deleterious(0.01)	deleterious(0.743)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ARSK	153642	genome.wustl.edu	37	5	94939059	94939059	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198150.2	+1	validated	p.V480	1.000	104	0%	55	18.2%	4	100%	-	-	-	NULL
RHOBTB3	22836	genome.wustl.edu	37	5	95116114	95116114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014899.3	+1	validated	p.D481N	1.000	222	0%	110	19.1%	1	0%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
ELL2	22936	genome.wustl.edu	37	5	95234447	95234447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012081.5	-1	validated	p.T341M	0.999	155	0%	109	23.9%	10	10%	probably_damaging(0.986)	tolerated(0.09)	deleterious(0.731)	NULL
ELL2	22936	genome.wustl.edu	37	5	95242453	95242453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012081.5	-1	validated	p.A172V	0.909	425	0%	100	15%	3	33.3%	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMPfam_ELL
PCSK1	5122	genome.wustl.edu	37	5	95761522	95761522	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000439.4	-1	reviewed	e3+2	1.000	373	0%	243	10.7%	0	-	-	-	-	-
CAST	831	genome.wustl.edu	37	5	96093315	96093315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001750.5	+1	reviewed	p.A597V	1.000	468	0%	200	25.5%	61	34.4%	possibly_damaging(0.882)	tolerated(0.06)	deleterious(0.667)	HMMPfam_Calpain_inhib
ERAP1	51752	genome.wustl.edu	37	5	96139106	96139106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016442.3	-1	validated	p.R175K	1.000	111	0%	119	18.5%	10	30%	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	HMMPfam_Peptidase_M1,superfamily_SSF63737
ERAP2	64167	genome.wustl.edu	37	5	96239149	96239149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130140.1	+1	validated	p.V633I	0.998	365	0%	137	21.9%	46	73.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LNPEP	4012	genome.wustl.edu	37	5	96315350	96315350	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005575.2	+1	reviewed	p.R176	0.738	220	0%	48	22.9%	5	0%	-	-	-	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
LIX1	167410	genome.wustl.edu	37	5	96460290	96460290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153234.4	-1	validated	p.Q42H	1.000	195	0%	46	13%	0	-	possibly_damaging(0.66)	deleterious(0.01)	deleterious(0.639)	NULL
RIOK2	55781	genome.wustl.edu	37	5	96504510	96504510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018343.2	-1	validated	p.R276C	1.000	218	0%	95	18.9%	10	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RIO1
CHD1	1105	genome.wustl.edu	37	5	98192370	98192370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001270.2	-1	reviewed	p.R1616M	1.000	363	0%	300	22%	39	48.7%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
CHD1	1105	genome.wustl.edu	37	5	98215376	98215376	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001270.2	-1	reviewed	p.N1039K	1.000	458	0%	356	14.6%	11	9%	benign(0.124)	tolerated(0.31)	neutral(0.037)	NULL
CHD1	1105	genome.wustl.edu	37	5	98239613	98239613	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001270.2	-1	reviewed	e3-1	1.000	240	0%	142	23.9%	0	-	-	-	-	-
ST8SIA4	7903	genome.wustl.edu	37	5	100147586	100147586	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005668.4	-1	reviewed	p.L349	1.000	663	0%	389	20.3%	9	11.1%	-	-	-	HMMPfam_Glyco_transf_29
SLCO4C1	353189	genome.wustl.edu	37	5	101575093	101575093	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_180991.4	-1	validated	e12-1	1.000	208	0%	77	31.2%	0	-	-	-	-	-
SLCO4C1	353189	genome.wustl.edu	37	5	101599457	101599457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_180991.4	-1	validated	p.G277D	1.000	245	0%	98	19.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO4C1	353189	genome.wustl.edu	37	5	101606376	101606376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_180991.4	-1	validated	p.A252S	1.000	152	0%	49	22.4%	0	-	benign(0.338)	tolerated(0.13)	neutral(0.359)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO4C1	353189	genome.wustl.edu	37	5	101606511	101606511	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_180991.4	-1	validated	e3-1	1.000	129	0%	42	23.8%	0	-	-	-	-	-
SLCO4C1	353189	genome.wustl.edu	37	5	101631702	101631702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_180991.4	-1	validated	p.G89S	1.000	133	0%	225	26.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SLCO6A1	133482	genome.wustl.edu	37	5	101774336	101774336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173488.3	-1	validated	p.A421T	0.181	104	0%	41	9.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_OATP,superfamily_MFS general substrate transporter
NUDT12	83594	genome.wustl.edu	37	5	102890459	102890459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031438.2	-1	validated	p.A354T	1.000	124	0%	115	24.3%	15	26.6%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_NUDIX,superfamily_Nudix
FER	2241	genome.wustl.edu	37	5	108207101	108207101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005246.2	+1	reviewed	p.S234N	1.000	224	0%	75	14.7%	3	33.3%	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	NULL
FER	2241	genome.wustl.edu	37	5	108290508	108290508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005246.2	+1	reviewed	p.A470S	1.000	292	0%	70	22.9%	1	0%	benign(0.047)	deleterious(0.02)	neutral(0.386)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
PJA2	9867	genome.wustl.edu	37	5	108714327	108714327	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014819.4	-1	validated	p.A287	0.004	507	0%	205	25.9%	14	35.7%	-	-	-	NULL
MAN2A1	4124	genome.wustl.edu	37	5	109106195	109106195	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002372.2	+1	reviewed	p.P383	1.000	230	0%	53	13.2%	2	50%	-	-	-	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl
MAN2A1	4124	genome.wustl.edu	37	5	109155562	109155562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002372.2	+1	reviewed	p.R768W	0.000	110	0%	70	25.7%	7	42.8%	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
MAN2A1	4124	genome.wustl.edu	37	5	109178108	109178108	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002372.2	+1	reviewed	p.I882M	1.000	194	0%	140	22.9%	6	16.6%	possibly_damaging(0.494)	deleterious(0.03)	deleterious(0.529)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
SLC25A46	91137	genome.wustl.edu	37	5	110075036	110075036	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000509442	+1	known	e1-1	0.242	21	0%	35	17.1%	6	33.3%	-	-	-	-
WDR36	134430	genome.wustl.edu	37	5	110441782	110441782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139281.2	+1	reviewed	p.R430C	1.000	301	0.7%	104	20.2%	6	83.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_WD40_like
WDR36	134430	genome.wustl.edu	37	5	110443080	110443080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139281.2	+1	reviewed	p.T479I	1.000	218	0%	69	15.9%	6	0%	probably_damaging(0.984)	tolerated(0.19)	deleterious(0.480)	superfamily_WD40_like
STARD4	134429	genome.wustl.edu	37	5	110836711	110836711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139164.1	-1	provisional	p.L129P	1.000	261	0%	218	14.2%	4	75%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_START,superfamily_SSF55961
STARD4	134429	genome.wustl.edu	37	5	110843044	110843044	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139164.1	-1	provisional	p.R30*	0.978	647	0%	524	22.1%	1	0%	-	-	-	HMMPfam_START,superfamily_SSF55961
APC	324	genome.wustl.edu	37	5	112177901	112177901	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000038.4	+1	reviewed	p.R2204*	0.999	127	0%	69	20.3%	3	33.3%	-	-	-	NULL
APC	324	genome.wustl.edu	37	5	112178827	112178827	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000038.4	+1	reviewed	p.S2512R	0.998	138	0%	48	31.2%	11	36.3%	benign(0.159)	tolerated(0.15)	neutral(0.255)	HMMPfam_APC_basic
ZRSR1	7310	genome.wustl.edu	37	5	112227360	112227360	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000391338	+1	known	p.T8	0.002	152	0%	125	21.6%	2	50%	-	-	-	NULL
ZRSR1	7310	genome.wustl.edu	37	5	112227868	112227868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000391338	+1	known	p.P178S	1.000	696	0%	475	23.2%	6	0%	possibly_damaging(0.744)	deleterious(0.03)	deleterious(0.637)	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1
ZRSR1	7310	genome.wustl.edu	37	5	112228397	112228397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000391338	+1	known	p.S354Y	1.000	185	0%	136	25.7%	1	0%	probably_damaging(0.992)	tolerated(0.07)	deleterious(0.766)	NULL
MCC	4163	genome.wustl.edu	37	5	112399837	112399837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001085377.1	-1	reviewed	p.T686N	1.000	81	0%	45	26.7%	1	0%	benign(0.013)	tolerated(0.11)	neutral(0.272)	NULL
MCC	4163	genome.wustl.edu	37	5	112406815	112406815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001085377.1	-1	reviewed	p.A634V	0.996	315	0%	285	12.6%	0	-	benign(0.05)	tolerated(0.06)	neutral(0.326)	HMMPfam_MCC-bdg_PDZ
YTHDC2	64848	genome.wustl.edu	37	5	112851020	112851020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022828.3	+1	validated	p.R80Q	1.000	472	0.2%	871	19.7%	0	-	possibly_damaging(0.568)	tolerated(0.51)	neutral(0.204)	HMMPfam_R3H,superfamily_SSF82708
YTHDC2	64848	genome.wustl.edu	37	5	112862360	112862360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022828.3	+1	validated	p.E185K	1.000	173	0%	125	27.2%	2	50%	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
KCNN2	3781	genome.wustl.edu	37	5	113831667	113831667	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021614.2	+1	reviewed	p.L510	1.000	211	0.5%	45	11.1%	1	100%	-	-	-	NULL
FEM1C	56929	genome.wustl.edu	37	5	114860309	114860309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020177.2	-1	validated	p.C517Y	1.000	350	0%	106	28.3%	14	42.8%	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
TMED7	51014	genome.wustl.edu	37	5	114951979	114951979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181836.5	-1	validated	p.S201N	1.000	289	0%	290	20.3%	48	39.5%	possibly_damaging(0.768)	deleterious(0.04)	deleterious(0.634)	HMMPfam_EMP24_GP25L
AP3S1	1176	genome.wustl.edu	37	5	115205761	115205761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001284.2	+1	validated	p.T70M	1.000	593	0%	252	12.3%	58	25.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Clat_adaptor_s,PatternScan_CLAT_ADAPTOR_S,superfamily_SNARE-like
AQPEP	206338	genome.wustl.edu	37	5	115336134	115336134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173800.4	+1	validated	p.A507V	0.995	417	0%	324	21.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
AQPEP	206338	genome.wustl.edu	37	5	115350225	115350225	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173800.4	+1	validated	e16+1	0.999	303	0%	113	17.7%	0	-	-	-	-	-
SEMA6A	57556	genome.wustl.edu	37	5	115783183	115783183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020796.3	-1	validated	p.K740R	1.000	129	0%	116	12.1%	7	42.8%	benign(0.204)	tolerated(0.53)	neutral(0.027)	NULL
DTWD2	285605	genome.wustl.edu	37	5	118264291	118264291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173666.2	-1	validated	p.T180A	1.000	134	0%	47	17%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DTW
DMXL1	1657	genome.wustl.edu	37	5	118574725	118574725	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005509.4	+1	validated	p.F2846	1.000	358	0%	75	21.3%	8	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
TNFAIP8	25816	genome.wustl.edu	37	5	118728594	118728594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014350.2	+1	validated	p.A39T	1.000	162	0%	42	19%	9	0%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_DUF758
TNFAIP8	25816	genome.wustl.edu	37	5	118728896	118728896	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014350.2	+1	validated	p.L139	0.012	223	0%	69	18.8%	12	33.3%	-	-	-	HMMPfam_DUF758
FTMT	94033	genome.wustl.edu	37	5	121188359	121188359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177478.1	+1	validated	p.T234I	0.999	140	0%	180	19.4%	0	-	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	superfamily_Ferritin/RR_like
LOX	4015	genome.wustl.edu	37	5	121405775	121405775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002317.5	-1	reviewed	p.A407V	1.000	209	0%	144	18.8%	15	46.6%	benign(0.006)	tolerated(0.52)	neutral(0.009)	HMMPfam_Lysyl_oxidase
ZNF474	133923	genome.wustl.edu	37	5	121488290	121488290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207317.1	+1	provisional	p.S202F	0.001	184	0%	78	25.6%	3	33.3%	possibly_damaging(0.92)	deleterious(0.02)	deleterious(0.754)	NULL
ZNF474	133923	genome.wustl.edu	37	5	121488579	121488579	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207317.1	+1	provisional	p.R298	0.008	195	0%	77	18.2%	1	0%	-	-	-	NULL
SNX2	6643	genome.wustl.edu	37	5	122110871	122110871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003100.2	+1	reviewed	p.E25K	1.000	43	0%	58	20.7%	46	43.4%	possibly_damaging(0.653)	deleterious(0.01)	deleterious(0.635)	HMMPfam_Sorting_nexin
PRDM6	93166	genome.wustl.edu	37	5	122506476	122506476	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136239.1	+1	validated	p.T390	0.990	100	0%	85	17.6%	2	50%	-	-	-	NULL
ZNF608	57507	genome.wustl.edu	37	5	123983756	123983756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020747.2	-1	validated	p.T774I	0.989	390	0%	377	19.4%	2	100%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
GRAMD3	65983	genome.wustl.edu	37	5	125822592	125822592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023927.2	+1	validated	p.F362L	1.000	307	0%	71	16.9%	40	30%	benign(0.043)	tolerated(0.93)	neutral(0.003)	NULL
MEGF10	84466	genome.wustl.edu	37	5	126774244	126774244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032446.2	+1	validated	p.L740I	1.000	113	0%	50	14%	0	-	probably_damaging(0.995)	tolerated(0.2)	deleterious(0.507)	HMMSmart_SM00180,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin
SLC12A2	6558	genome.wustl.edu	37	5	127503519	127503519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001046.2	+1	validated	p.A895T	1.000	444	0%	116	25%	6	33.3%	benign(0.005)	tolerated(0.16)	neutral(0.059)	NULL
FBN2	2201	genome.wustl.edu	37	5	127595425	127595425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001999.3	-1	reviewed	p.L2821I	0.998	395	0%	132	15.9%	13	53.8%	possibly_damaging(0.618)	tolerated(0.17)	neutral(0.274)	NULL
FBN2	2201	genome.wustl.edu	37	5	127610334	127610334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001999.3	-1	reviewed	p.L2546I	1.000	172	0%	58	13.8%	12	41.6%	benign(0.184)	tolerated(0.41)	neutral(0.032)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,HMMPfam_EGF_CA,PatternScan_EGF_CA
FBN2	2201	genome.wustl.edu	37	5	127637154	127637154	+	Missense_Mutation	SNP	C	C	T	rs189964478	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001999.3	-1	reviewed	p.R1989H	0.993	350	0%	219	14.6%	1	0%	benign(0.005)	tolerated(0.33)	neutral(0.024)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN2	2201	genome.wustl.edu	37	5	127653922	127653922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001999.3	-1	reviewed	p.L1546I	0.169	352	0%	87	26.4%	1	0%	benign(0.004)	tolerated(0.41)	neutral(0.015)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN2	2201	genome.wustl.edu	37	5	127654578	127654578	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001999.3	-1	reviewed	p.N1529	1.000	144	0%	39	20.5%	1	0%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,superfamily_EGF/Laminin
SLC27A6	28965	genome.wustl.edu	37	5	128351750	128351750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017372.1	+1	reviewed	p.G381V	0.995	444	0%	225	16%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_SSF56801
SLC27A6	28965	genome.wustl.edu	37	5	128362859	128362859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017372.1	+1	reviewed	p.A430V	0.000	258	0%	94	18.1%	8	75%	benign(0.025)	tolerated(0.2)	neutral(0.050)	HMMPfam_AMP-binding,superfamily_SSF56801
ADAMTS19	171019	genome.wustl.edu	37	5	129001191	129001191	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133638.3	+1	reviewed	e16-1	1.000	379	0%	138	25.4%	0	-	-	-	-	-
ADAMTS19	171019	genome.wustl.edu	37	5	129030517	129030517	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133638.3	+1	reviewed	p.R969*	1.000	309	0%	165	20.6%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
CHSY3	337876	genome.wustl.edu	37	5	129244016	129244016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175856.4	+1	validated	p.R350H	1.000	459	0.2%	493	17.6%	3	33.3%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_CHGN
RAPGEF6	51735	genome.wustl.edu	37	5	130764613	130764613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016340.5	-1	validated	p.A1588T	0.997	250	0.4%	164	24.4%	8	37.5%	benign(0.086)	deleterious(0.01)	neutral(0.412)	NULL
RAPGEF6	51735	genome.wustl.edu	37	5	130970666	130970666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016340.5	-1	validated	p.R20W	1.000	85	0%	71	15.5%	1	100%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_cAMP-binding domain-like
ACSL6	23305	genome.wustl.edu	37	5	131290004	131290004	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009185.1	-1	validated	p.T698S	1.000	455	0%	296	25.7%	1	0%	possibly_damaging(0.934)	deleterious(0)	deleterious(0.825)	superfamily_SSF56801
ACSL6	23305	genome.wustl.edu	37	5	131326566	131326566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009185.1	-1	validated	p.R122H	1.000	114	0%	87	17.2%	0	-	benign(0.006)	tolerated(0.19)	neutral(0.050)	superfamily_SSF56801
RAD50	10111	genome.wustl.edu	37	5	131939624	131939624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005732.3	+1	reviewed	p.D804Y	1.000	183	0%	56	28.6%	16	62.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD50	10111	genome.wustl.edu	37	5	131953817	131953817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005732.3	+1	reviewed	p.A1074T	1.000	303	0%	146	28.8%	14	64.2%	probably_damaging(0.998)	tolerated(0.2)	deleterious(0.523)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF3A	11127	genome.wustl.edu	37	5	132037846	132037846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007054.5	-1	validated	p.R579Q	1.000	279	0%	146	26.7%	5	40%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SHROOM1	134549	genome.wustl.edu	37	5	132161022	132161022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133456.2	-1	validated	p.H271Y	0.002	76	0%	102	18.6%	3	33.3%	possibly_damaging(0.916)	tolerated(0.06)	deleterious(0.690)	NULL
GDF9	2661	genome.wustl.edu	37	5	132197317	132197317	+	Silent	SNP	G	G	A	rs191882278	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005260.3	-1	reviewed	p.Y443	0.998	240	0.8%	174	18.4%	1	0%	-	-	-	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501
GDF9	2661	genome.wustl.edu	37	5	132200119	132200119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005260.3	-1	reviewed	p.A36V	0.000	187	0.5%	127	22.8%	0	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	NULL
AFF4	27125	genome.wustl.edu	37	5	132269971	132269971	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014423.3	-1	validated	p.G262	1.000	437	0.2%	257	22.6%	4	25%	-	-	-	HMMPfam_AF-4
FSTL4	23105	genome.wustl.edu	37	5	132535381	132535381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015082.1	-1	validated	p.Q645H	0.004	57	1.8%	27	18.5%	0	-	benign(0.005)	tolerated(0.13)	neutral(0.253)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
CDKN2AIPNL	91368	genome.wustl.edu	37	5	133745592	133745592	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080656.2	-1	validated	e2+2	1.000	564	0%	593	15.2%	0	-	-	-	-	-
PHF15	23338	genome.wustl.edu	37	5	133887801	133887801	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015288.4	+1	provisional	p.P71	0.121	128	2.3%	78	29.5%	7	28.5%	-	-	-	HMMPfam_EPL1
PHF15	23338	genome.wustl.edu	37	5	133901967	133901967	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015288.4	+1	provisional	p.P377	0.000	77	0%	47	21.3%	8	25%	-	-	-	NULL
PHF15	23338	genome.wustl.edu	37	5	133914189	133914189	+	Missense_Mutation	SNP	C	C	A	rs190789514	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015288.4	+1	provisional	p.L519M	0.998	98	0%	88	21.6%	15	40%	benign(0.009)	tolerated(0.11)	neutral(0.272)	NULL
SAR1B	51128	genome.wustl.edu	37	5	133956708	133956708	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033503.2	-1	reviewed	p.L31	1.000	704	0%	328	23.8%	34	67.6%	-	-	-	HMMSmart_SAR,HMMPfam_Arf,superfamily_SSF52540
SEC24A	10802	genome.wustl.edu	37	5	133984775	133984775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021982.1	+1	validated	p.Q3H	1.000	25	0%	42	14.3%	5	20%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SEC24A	10802	genome.wustl.edu	37	5	133997025	133997025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021982.1	+1	validated	p.A105V	0.832	402	0%	238	23.9%	5	20%	benign(0)	tolerated(1)	-	NULL
SEC24A	10802	genome.wustl.edu	37	5	134032891	134032891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021982.1	+1	validated	p.D688N	1.000	607	0%	314	21.7%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Sec23_trunk,superfamily_vWA-like
DDX46	9879	genome.wustl.edu	37	5	134152264	134152264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014829.2	+1	reviewed	p.A861T	1.000	158	0%	79	26.6%	33	54.5%	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
ENSG00000145832	0	genome.wustl.edu	37	5	135207516	135207516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000274513	+1	known	p.R263M	0.000	93	0%	94	27.7%	0	-	benign(0.001)	-	-	NULL
TGFBI	7045	genome.wustl.edu	37	5	135394869	135394869	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000358.2	+1	reviewed	p.K590T	1.000	152	0%	51	23.5%	85	0%	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
SMAD5	4090	genome.wustl.edu	37	5	135489530	135489530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000398807	+1	known	p.E27D	1.000	438	0%	153	25.5%	4	0%	benign(0.038)	tolerated(0.19)	neutral(0.052)	HMMSmart_SM00523,superfamily_SMAD MH1 domain
SPOCK1	6695	genome.wustl.edu	37	5	136448205	136448205	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004598.3	-1	reviewed	p.S131	0.684	179	0%	57	19.3%	4	0%	-	-	-	superfamily_SSF100895
MYOT	9499	genome.wustl.edu	37	5	137223040	137223040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006790.2	+1	reviewed	p.A488V	1.000	203	0%	311	21.2%	0	-	benign(0.323)	tolerated(0.41)	neutral(0.116)	NULL
PKD2L2	27039	genome.wustl.edu	37	5	137257383	137257383	+	Missense_Mutation	SNP	A	A	G	rs184406759	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014386.2	+1	validated	p.N463D	0.997	885	0%	364	21.2%	0	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	HMMPfam_PKD_channel
FAM13B	51306	genome.wustl.edu	37	5	137275968	137275968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016603.2	-1	validated	p.K898N	1.000	452	0%	195	23.1%	4	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FAM13B	51306	genome.wustl.edu	37	5	137346763	137346763	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016603.2	-1	validated	p.Y208	1.000	448	0%	320	20%	1	0%	-	-	-	HMMSmart_RhoGAP,superfamily_Rho_GAP
FAM13B	51306	genome.wustl.edu	37	5	137347509	137347509	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016603.2	-1	validated	p.E166*	1.000	186	0%	165	18.8%	2	0%	-	-	-	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
FAM13B	51306	genome.wustl.edu	37	5	137354001	137354001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016603.2	-1	validated	p.Q120H	0.997	230	0%	156	25.6%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
NME5	8382	genome.wustl.edu	37	5	137474399	137474399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003551.2	-1	validated	p.V24A	0.998	587	0%	655	22.6%	21	66.6%	benign(0.003)	tolerated(0.08)	neutral(0.300)	HMMPfam_NDK,HMMSmart_SM00562,superfamily_Nucleoside diphosphate kinases
BRD8	10902	genome.wustl.edu	37	5	137496699	137496699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139199.1	-1	reviewed	p.A770T	1.000	287	0%	100	18%	31	19.3%	benign(0.264)	tolerated(0.08)	neutral(0.328)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
BRD8	10902	genome.wustl.edu	37	5	137502262	137502262	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139199.1	-1	reviewed	p.A314	1.000	107	0%	33	36.4%	21	42.8%	-	-	-	NULL
BRD8	10902	genome.wustl.edu	37	5	137506842	137506842	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139199.1	-1	reviewed	p.R82*	1.000	408	0%	210	19.5%	6	16.6%	-	-	-	NULL
KIF20A	10112	genome.wustl.edu	37	5	137517149	137517149	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005733.2	+1	validated	p.Y68*	0.986	298	0%	78	20.5%	7	14.2%	-	-	-	HMMSmart_KISc,superfamily_SSF52540
CDC23	8697	genome.wustl.edu	37	5	137533968	137533968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004661.3	-1	reviewed	p.S311I	1.000	132	0%	85	23.5%	10	0%	benign(0.025)	deleterious(0.04)	neutral(0.350)	superfamily_TPR-like
CDC23	8697	genome.wustl.edu	37	5	137534408	137534408	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004661.3	-1	reviewed	p.E240*	1.000	226	0%	123	28.5%	5	0%	-	-	-	superfamily_TPR-like
KDM3B	51780	genome.wustl.edu	37	5	137722158	137722158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016604.3	+1	validated	p.L410M	1.000	212	0.5%	104	41.3%	10	30%	probably_damaging(0.996)	tolerated(0.19)	deleterious(0.511)	NULL
KDM3B	51780	genome.wustl.edu	37	5	137750859	137750859	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016604.3	+1	validated	p.L1080	1.000	279	0%	148	17.6%	17	17.6%	-	-	-	NULL
KDM3B	51780	genome.wustl.edu	37	5	137756565	137756565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016604.3	+1	validated	p.L1296I	1.000	185	0%	106	22.6%	32	37.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
KDM3B	51780	genome.wustl.edu	37	5	137765625	137765625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016604.3	+1	validated	p.A1622T	1.000	178	0%	136	18.4%	60	46.6%	benign(0.086)	tolerated(0.35)	neutral(0.027)	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like
EGR1	1958	genome.wustl.edu	37	5	137801495	137801495	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001964.2	+1	reviewed	p.Q15	1.000	40	0%	52	28.8%	11	36.3%	-	-	-	NULL
EGR1	1958	genome.wustl.edu	37	5	137802531	137802531	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001964.2	+1	reviewed	p.I131	0.980	93	0%	101	10.9%	62	38.7%	-	-	-	NULL
ETF1	2107	genome.wustl.edu	37	5	137854413	137854413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004730.2	-1	validated	p.S77F	1.000	580	0%	177	16.9%	41	31.7%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_eRF1_1,superfamily_N-terminal domain of eukaryotic peptide chain release factor subunit 1 ERF1
ETF1	2107	genome.wustl.edu	37	5	137878589	137878589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004730.2	-1	validated	p.A7T	1.000	35	0%	33	21.2%	11	36.3%	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_eRF1_1,superfamily_N-terminal domain of eukaryotic peptide chain release factor subunit 1 ERF1
CTNNA1	1495	genome.wustl.edu	37	5	138147923	138147923	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001903.2	+1	validated	p.G174*	1.000	538	0%	638	13.5%	99	1%	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
LRRTM2	26045	genome.wustl.edu	37	5	138209199	138209199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015564.2	-1	validated	p.L351I	1.000	348	0%	197	10.7%	0	-	probably_damaging(0.998)	tolerated(0.35)	deleterious(0.495)	NULL
CTNNA1	1495	genome.wustl.edu	37	5	138268294	138268294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001903.2	+1	validated	p.L776M	1.000	82	0%	59	23.7%	365	57.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
SLC23A1	9963	genome.wustl.edu	37	5	138713749	138713749	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152685.3	-1	reviewed	p.R460	0.859	148	0%	128	18.8%	1	0%	-	-	-	HMMPfam_Xan_ur_permease
SLC23A1	9963	genome.wustl.edu	37	5	138717705	138717705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152685.3	-1	reviewed	p.V62M	1.000	93	0%	93	23.7%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Xan_ur_permease
UBE2D2	7322	genome.wustl.edu	37	5	139006340	139006340	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003339.2	+1	reviewed	e7-1	1.000	525	0%	296	10.8%	79	97.4%	-	-	-	-
UBE2D2	7322	genome.wustl.edu	37	5	139006355	139006355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003339.2	+1	reviewed	p.A138V	1.000	518	0%	307	21.2%	251	39.4%	benign(0.253)	deleterious(0.02)	neutral(0.409)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
HBEGF	1839	genome.wustl.edu	37	5	139725556	139725556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001945.2	-1	validated	p.G54R	0.153	76	0%	109	13.8%	2	0%	benign(0.005)	tolerated(0.1)	neutral(0.286)	NULL
ANKHD1	54882	genome.wustl.edu	37	5	139907829	139907829	+	Silent	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000435794	+1	known	p.C257S	1.000	178	0%	91	22%	35	48.5%	-	-	-	NULL
APBB3	10307	genome.wustl.edu	37	5	139941585	139941585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000419006	-1	known	p.T211I	1.000	107	0%	116	20.7%	3	0%	unknown(0)	-	-	NULL
TMCO6	55374	genome.wustl.edu	37	5	140021294	140021294	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000515653	+1	known	p.G86*	1.000	69	0%	60	31.7%	9	55.5%	-	-	-	NULL
WDR55	54853	genome.wustl.edu	37	5	140048485	140048485	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017706.4	+1	validated	p.G190	0.998	209	0%	209	17.7%	20	35%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ENSG00000249821	0	genome.wustl.edu	37	5	140165855	140165855	+	RNA	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000508944	-1	known	NULL	0.000	62	0%	87	28.7%	1	0%	-	-	-	-
PCDHA1	56147	genome.wustl.edu	37	5	140166008	140166008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018900.2	+1	reviewed	p.V45I	1.000	64	0%	94	31.9%	0	-	possibly_damaging(0.92)	deleterious(0.03)	deleterious(0.736)	HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA1	56147	genome.wustl.edu	37	5	140167326	140167326	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018900.2	+1	reviewed	p.A484G	0.988	79	0%	45	24.4%	0	-	possibly_damaging(0.585)	tolerated(0.14)	neutral(0.451)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA2	56146	genome.wustl.edu	37	5	140174795	140174795	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018905.2	+1	reviewed	p.G82	0.974	118	0%	142	19.7%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA3	56145	genome.wustl.edu	37	5	140181469	140181469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018906.2	+1	reviewed	p.K229N	0.037	79	0%	115	13%	0	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA4	56144	genome.wustl.edu	37	5	140187070	140187070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018907.2	+1	reviewed	p.A100T	0.000	76	0%	120	21.7%	2	50%	benign(0)	tolerated(0.24)	neutral(0.037)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA4	56144	genome.wustl.edu	37	5	140188182	140188182	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018907.2	+1	reviewed	p.P470	0.116	57	1.8%	88	33%	4	25%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA4	56144	genome.wustl.edu	37	5	140189083	140189083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018907.2	+1	reviewed	p.A771S	0.996	142	0%	243	27.2%	3	33.3%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
PCDHA6	56142	genome.wustl.edu	37	5	140207893	140207893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018909.2	+1	reviewed	p.D73Y	0.459	115	0.9%	111	21.6%	1	0%	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140208978	140208978	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018909.2	+1	reviewed	p.S434	0.000	47	2.1%	60	15%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140209126	140209126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018909.2	+1	reviewed	p.A484T	0.072	53	0%	49	22.4%	0	-	benign(0.002)	tolerated(0.5)	neutral(0.010)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140229286	140229286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031857.1	+1	reviewed	p.K402N	0.471	143	0%	200	17.5%	0	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140229667	140229667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031857.1	+1	reviewed	p.E529D	1.000	34	0%	35	28.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140230172	140230172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031857.1	+1	reviewed	p.V698M	0.998	55	0%	44	15.9%	0	-	possibly_damaging(0.432)	deleterious(0.03)	deleterious(0.505)	NULL
PCDHA10	56139	genome.wustl.edu	37	5	140237435	140237435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018901.2	+1	reviewed	p.G601E	1.000	165	0%	152	26.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA10	56139	genome.wustl.edu	37	5	140237701	140237701	+	Missense_Mutation	SNP	G	G	A	rs140097524	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018901.2	+1	reviewed	p.A690T	0.000	39	0%	40	35%	2	0%	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
PCDHA11	56138	genome.wustl.edu	37	5	140248833	140248833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018902.3	+1	reviewed	p.A49T	1.000	92	0%	123	24.4%	2	50%	possibly_damaging(0.633)	deleterious(0)	deleterious(0.665)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140256582	140256582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018903.2	+1	reviewed	p.S509P	0.998	38	0%	32	18.8%	9	88.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140256758	140256758	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018903.2	+1	reviewed	p.A567	0.012	118	0%	88	22.7%	8	75%	-	-	-	superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140263757	140263757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018904.2	+1	reviewed	p.R635H	0.864	24	0%	21	28.6%	0	-	possibly_damaging(0.921)	deleterious(0.01)	deleterious(0.776)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140264050	140264050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018904.2	+1	reviewed	p.A733T	0.012	74	0%	60	23.3%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
PCDHAC1	56135	genome.wustl.edu	37	5	140308646	140308646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018898.3	+1	reviewed	p.E723D	0.022	188	0%	269	21.2%	1	0%	possibly_damaging(0.685)	tolerated(0.6)	neutral(0.249)	NULL
PCDHB2	56133	genome.wustl.edu	37	5	140475574	140475574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018936.2	+1	reviewed	p.E400D	0.841	238	0%	299	22.1%	30	50%	benign(0.001)	tolerated(0.39)	neutral(0.016)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB2	56133	genome.wustl.edu	37	5	140476015	140476015	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018936.2	+1	reviewed	p.A547	0.364	56	0%	25	40%	6	33.3%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB3	56132	genome.wustl.edu	37	5	140482304	140482304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018937.2	+1	reviewed	p.V691M	0.993	54	0%	33	12.1%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PCDHB5	26167	genome.wustl.edu	37	5	140516495	140516495	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015669.2	+1	reviewed	p.Q493	0.000	74	0%	95	24.2%	5	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB5	26167	genome.wustl.edu	37	5	140516576	140516576	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015669.2	+1	reviewed	p.Y520	0.993	64	0%	84	17.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB6	56130	genome.wustl.edu	37	5	140530609	140530609	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018939.2	+1	reviewed	p.G257	0.001	148	0%	219	21.9%	1	0%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
PCDHB7	56129	genome.wustl.edu	37	5	140553052	140553052	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018940.2	+1	reviewed	p.L212	0.996	99	0%	173	24.3%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB8	56128	genome.wustl.edu	37	5	140558172	140558172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019120.2	+1	reviewed	p.R186H	0.006	162	0%	234	12.4%	7	28.5%	benign(0.036)	tolerated(0.14)	neutral(0.252)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB8	56128	genome.wustl.edu	37	5	140558213	140558213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019120.2	+1	reviewed	p.A200T	0.328	180	0%	243	21.8%	8	12.5%	benign(0.01)	tolerated(0.13)	neutral(0.253)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB16	57717	genome.wustl.edu	37	5	140562319	140562319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020957.1	+1	reviewed	p.R62H	0.118	196	0%	272	27.2%	2	50%	possibly_damaging(0.808)	deleterious(0.01)	deleterious(0.710)	HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHB16	57717	genome.wustl.edu	37	5	140562479	140562479	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020957.1	+1	reviewed	p.E115	0.324	108	0%	130	25.4%	6	33.3%	-	-	-	superfamily_Cadherin
PCDHB10	56126	genome.wustl.edu	37	5	140573011	140573011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018930.3	+1	reviewed	p.P296T	0.011	200	0%	325	24.3%	1	0%	benign(0.002)	tolerated(0.08)	neutral(0.300)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140580944	140580944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018931.2	+1	reviewed	p.A533T	0.973	109	0%	100	19%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB12	56124	genome.wustl.edu	37	5	140590590	140590590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018932.3	+1	reviewed	p.S704L	0.000	57	0%	65	23.1%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
ENSG00000250800	0	genome.wustl.edu	37	5	140593536	140593536	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000507840	-1	novel	NULL	0.000	60	0%	73	24.7%	0	-	-	-	-	-
PCDHB14	56122	genome.wustl.edu	37	5	140603765	140603765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018934.2	+1	reviewed	p.I230V	0.157	79	0%	100	26%	9	66.6%	benign(0.017)	tolerated(0.34)	neutral(0.024)	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHB15	56121	genome.wustl.edu	37	5	140626263	140626263	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018935.2	+1	reviewed	p.R373*	0.556	244	0%	339	20.9%	1	100%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB15	56121	genome.wustl.edu	37	5	140627243	140627243	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018935.2	+1	reviewed	p.S699	0.315	63	0%	62	9.7%	3	33.3%	-	-	-	NULL
SLC25A2	83884	genome.wustl.edu	37	5	140682798	140682798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031947.2	-1	reviewed	p.L212S	0.991	315	0%	389	21.1%	0	-	probably_damaging(0.969)	deleterious(0.03)	deleterious(0.776)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SLC25A2	83884	genome.wustl.edu	37	5	140683143	140683143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031947.2	-1	reviewed	p.G97V	0.800	109	0.9%	118	16.9%	0	-	possibly_damaging(0.939)	deleterious(0.01)	deleterious(0.790)	superfamily_Mitoch_carrier
PCDHGA2	56113	genome.wustl.edu	37	5	140718989	140718989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018915.2	+1	reviewed	p.R151W	0.000	155	0%	154	19.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGA2	56113	genome.wustl.edu	37	5	140719281	140719281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018915.2	+1	reviewed	p.R248H	0.023	68	0%	99	10.1%	0	-	benign(0.015)	tolerated(0.08)	neutral(0.300)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGA2	56113	genome.wustl.edu	37	5	140719710	140719710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018915.2	+1	reviewed	p.P391H	1.000	190	0%	290	25.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA2	56113	genome.wustl.edu	37	5	140720013	140720013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018915.2	+1	reviewed	p.A492V	0.000	257	0%	248	21.4%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA2	56113	genome.wustl.edu	37	5	140720379	140720379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018915.2	+1	reviewed	p.P614L	0.961	50	0%	44	25%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA2	56113	genome.wustl.edu	37	5	140720625	140720625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018915.2	+1	reviewed	p.A696V	1.000	130	0%	151	24.5%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
PCDHGA4	56111	genome.wustl.edu	37	5	140735534	140735534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018917.2	+1	reviewed	p.P256H	0.949	81	0%	106	17.9%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGB2	56103	genome.wustl.edu	37	5	140740094	140740094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018923.2	+1	reviewed	p.P131L	1.000	77	0%	97	21.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGB2	56103	genome.wustl.edu	37	5	140740990	140740990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018923.2	+1	reviewed	p.P430S	0.936	82	0%	89	29.2%	10	40%	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140750728	140750728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018924.2	+1	reviewed	p.P256L	0.965	69	0%	130	26.9%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140751107	140751107	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018924.2	+1	reviewed	p.I382	0.000	210	0%	192	16.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140751750	140751750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018924.2	+1	reviewed	p.D597N	0.995	31	0%	30	33.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA6	56109	genome.wustl.edu	37	5	140755255	140755255	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018919.2	+1	reviewed	p.S535	0.007	108	0%	131	26%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA6	56109	genome.wustl.edu	37	5	140755529	140755529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018919.2	+1	reviewed	p.R627C	0.988	48	0%	29	34.5%	2	100%	possibly_damaging(0.931)	deleterious(0.01)	deleterious(0.783)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140769155	140769155	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003736.2	+1	reviewed	p.D568	0.922	23	0%	28	32.1%	0	-	-	-	-	superfamily_Cadherin-like
PCDHGB5	56101	genome.wustl.edu	37	5	140779581	140779581	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018925.2	+1	reviewed	p.G629	0.404	65	0%	32	37.5%	7	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140782718	140782718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018921.2	+1	reviewed	p.V67I	0.099	76	0%	115	18.3%	1	100%	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140783327	140783327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018921.2	+1	reviewed	p.D270N	1.000	90	0%	106	29.2%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140787977	140787977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018926.2	+1	reviewed	p.A70T	0.000	274	0.4%	328	26.2%	0	-	benign(0.017)	tolerated(0.57)	neutral(0.007)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140789189	140789189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018926.2	+1	reviewed	p.V474M	0.122	67	0%	75	24%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140789399	140789399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018926.2	+1	reviewed	p.A544T	1.000	27	0%	16	25%	0	-	benign(0.033)	tolerated(0.11)	neutral(0.273)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140789740	140789740	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018926.2	+1	reviewed	p.T657	0.436	91	1.1%	152	28.9%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140790102	140790102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018926.2	+1	reviewed	p.D778G	0.899	356	0%	534	24.5%	0	-	benign(0.077)	tolerated(0.12)	neutral(0.266)	NULL
PCDHGA10	56106	genome.wustl.edu	37	5	140794487	140794487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018913.2	+1	reviewed	p.A582V	0.990	98	0%	108	23.1%	7	85.7%	benign(0.199)	tolerated(1)	neutral(0.019)	superfamily_Cadherin-like
PCDHGA10	56106	genome.wustl.edu	37	5	140794831	140794831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018913.2	+1	reviewed	p.L697M	0.995	128	0%	124	25%	6	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCDHGA11	56105	genome.wustl.edu	37	5	140801022	140801022	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018914.2	+1	reviewed	p.F76	0.966	87	0%	112	30.4%	1	0%	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140801517	140801517	+	Silent	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018914.2	+1	reviewed	p.P241	0.010	82	0%	129	23.3%	0	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140803131	140803131	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018914.2	+1	reviewed	p.T779	0.029	145	0.7%	223	24.2%	0	-	-	-	-	NULL
PCDHGA12	26025	genome.wustl.edu	37	5	140810631	140810631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003735.2	+1	reviewed	p.C102Y	0.991	89	0%	111	23.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA12	26025	genome.wustl.edu	37	5	140810727	140810727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003735.2	+1	reviewed	p.R134H	0.000	86	0%	87	19.5%	0	-	benign(0.006)	tolerated(0.16)	neutral(0.059)	superfamily_Cadherin-like
PCDHGC4	56098	genome.wustl.edu	37	5	140864898	140864898	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018928.2	+1	reviewed	p.L53R	1.000	75	0%	104	13.5%	0	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGC4	56098	genome.wustl.edu	37	5	140867194	140867194	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032406.1	+1	reviewed	p.L818	0.208	164	0%	223	21.5%	0	-	-	-	-	NULL
PCDHGC5	56097	genome.wustl.edu	37	5	140869501	140869501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018929.2	+1	reviewed	p.V232M	0.996	169	0.6%	177	29.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGC5	56097	genome.wustl.edu	37	5	140871248	140871248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018929.2	+1	reviewed	p.T814M	0.016	17	0%	23	21.7%	0	-	probably_damaging(0.989)	tolerated(0.1)	deleterious(0.726)	NULL
DIAPH1	1729	genome.wustl.edu	37	5	140905950	140905950	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005219.4	-1	reviewed	p.L1118	1.000	216	0%	118	22.9%	78	50%	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
HDAC3	8841	genome.wustl.edu	37	5	141005766	141005766	+	Silent	SNP	G	G	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003883.3	-1	reviewed	p.R305	0.824	408	0%	356	20.5%	58	48.2%	-	-	-	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
FCHSD1	89848	genome.wustl.edu	37	5	141027540	141027540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033449.1	-1	provisional	p.L234F	0.998	229	0%	200	20%	17	29.4%	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
PCDH1	5097	genome.wustl.edu	37	5	141233768	141233768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032420.2	-1	reviewed	p.V1185M	1.000	44	0%	61	26.2%	6	33.3%	possibly_damaging(0.44)	tolerated(0.17)	neutral(0.202)	NULL
PCDH1	5097	genome.wustl.edu	37	5	141243347	141243347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032420.2	-1	reviewed	p.R850H	1.000	134	0%	110	25.5%	16	18.7%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMPfam_Protocadherin
PCDH12	51294	genome.wustl.edu	37	5	141335626	141335626	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016580.2	-1	reviewed	p.G597	0.003	63	0%	38	10.5%	3	0%	-	-	-	superfamily_Cadherin
PCDH12	51294	genome.wustl.edu	37	5	141337216	141337216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016580.2	-1	reviewed	p.Q67H	0.998	25	0%	36	33.3%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin
ARHGAP26	23092	genome.wustl.edu	37	5	142292822	142292822	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015071.4	+1	reviewed	p.E331V	1.000	310	0%	99	23.2%	44	36.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SH3RF2	153769	genome.wustl.edu	37	5	145442060	145442060	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152550.3	+1	validated	p.S662	0.014	380	0%	146	17.8%	8	50%	-	-	-	NULL
PLAC8L1	153770	genome.wustl.edu	37	5	145465160	145465160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001029869.1	-1	provisional	p.C86Y	1.000	275	0%	151	23.8%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_PLAC8
LARS	51520	genome.wustl.edu	37	5	145500060	145500060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020117.9	-1	reviewed	p.V1067M	1.000	205	0%	61	31.1%	89	15.7%	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	NULL
LARS	51520	genome.wustl.edu	37	5	145508266	145508266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020117.9	-1	reviewed	p.T950I	0.596	647	0%	169	19.5%	88	73.8%	benign(0)	tolerated(0.55)	neutral(0.007)	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
POU4F3	5459	genome.wustl.edu	37	5	145719807	145719807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002700.2	+1	reviewed	p.E273K	1.000	31	0%	34	14.7%	0	-	probably_damaging(0.992)	tolerated(0.09)	deleterious(0.744)	superfamily_Homeodomain_like
TCERG1	10915	genome.wustl.edu	37	5	145883448	145883448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006706.3	+1	reviewed	p.R870Q	1.000	298	0%	138	20.3%	16	31.2%	unknown(0)	deleterious(0.05)	-	NULL
PPP2R2B	5521	genome.wustl.edu	37	5	146030151	146030151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181676.2	-1	reviewed	p.R198M	1.000	575	0%	120	19.2%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_PP2A_B_subs_rcg,PatternScan_WD_REPEATS_1
PPP2R2B	5521	genome.wustl.edu	37	5	146080702	146080702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181676.2	-1	reviewed	p.D28G	1.000	438	0%	245	22%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
STK32A	202374	genome.wustl.edu	37	5	146750242	146750242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001112724.1	+1	validated	p.T229N	1.000	348	0%	131	20.6%	0	-	benign(0.038)	tolerated(0.21)	neutral(0.046)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DPYSL3	1809	genome.wustl.edu	37	5	146795370	146795370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001387.2	-1	validated	p.A127D	1.000	316	0%	129	24.8%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
JAKMIP2	9832	genome.wustl.edu	37	5	146997524	146997524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014790.3	-1	provisional	p.D766Y	1.000	385	0.5%	144	12.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
JAKMIP2	9832	genome.wustl.edu	37	5	147040561	147040561	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014790.3	-1	provisional	p.E193*	1.000	265	0%	175	21.7%	0	-	-	-	-	NULL
JAKMIP2	9832	genome.wustl.edu	37	5	147040784	147040784	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014790.3	-1	provisional	p.L118	0.964	128	0%	93	29%	2	0%	-	-	-	NULL
JAKMIP2	9832	genome.wustl.edu	37	5	147040924	147040924	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014790.3	-1	provisional	p.E72*	1.000	115	0%	86	24.4%	0	-	-	-	-	NULL
JAKMIP2	9832	genome.wustl.edu	37	5	147051354	147051354	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014790.3	-1	provisional	p.R6*	1.000	334	0%	281	18.1%	1	0%	-	-	-	NULL
SPINK5	11005	genome.wustl.edu	37	5	147449981	147449981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127698.1	+1	reviewed	p.F59L	0.009	173	0%	75	18.7%	0	-	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors
SPINK5	11005	genome.wustl.edu	37	5	147492435	147492435	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127698.1	+1	reviewed	p.Q609*	0.982	786	0%	267	16.5%	3	0%	-	-	-	HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors
SPINK13	153218	genome.wustl.edu	37	5	147665608	147665608	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040129.2	+1	provisional	p.D94E	0.000	522	0%	302	21.9%	0	-	possibly_damaging(0.509)	tolerated(0.88)	neutral(0.171)	NULL
SH3TC2	79628	genome.wustl.edu	37	5	148388414	148388414	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024577.3	-1	reviewed	p.G1160*	1.000	207	0%	82	19.5%	0	-	-	-	-	superfamily_TPR-like
ABLIM3	22885	genome.wustl.edu	37	5	148577861	148577861	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014945.2	+1	validated	p.L77	1.000	129	0%	82	28%	0	-	-	-	-	HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ABLIM3	22885	genome.wustl.edu	37	5	148627416	148627416	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014945.2	+1	validated	p.P541	0.998	86	0%	32	25%	0	-	-	-	-	NULL
IL17B	27190	genome.wustl.edu	37	5	148754106	148754106	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014443.2	-1	reviewed	p.C123	1.000	11	0%	14	35.7%	1	0%	-	-	-	HMMPfam_IL17,superfamily_SSF57501
ARHGEF37	389337	genome.wustl.edu	37	5	148997782	148997782	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001669.2	+1	validated	p.R234	0.987	111	0%	47	23.4%	2	100%	-	-	-	NULL
ARHGEF37	389337	genome.wustl.edu	37	5	148998550	148998550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001669.2	+1	validated	p.S280F	0.987	408	0.2%	268	28.7%	0	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMPfam_BAR
PPARGC1B	133522	genome.wustl.edu	37	5	149210419	149210419	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133263.3	+1	reviewed	p.R185S	1.000	191	0%	101	19.8%	0	-	benign(0.002)	tolerated(0.52)	neutral(0.009)	NULL
PDE6A	5145	genome.wustl.edu	37	5	149240513	149240513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000440.2	-1	reviewed	p.G843E	0.000	155	0%	56	23.2%	0	-	possibly_damaging(0.915)	tolerated(0.48)	neutral(0.377)	superfamily_SSF109604
SLC26A2	1836	genome.wustl.edu	37	5	149357801	149357801	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000112.3	+1	reviewed	p.M196L	0.000	323	0%	115	20.9%	11	36.3%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
HMGXB3	22993	genome.wustl.edu	37	5	149416301	149416301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014983.2	+1	validated	p.V696F	0.994	114	0%	49	16.3%	16	50%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
CSF1R	1436	genome.wustl.edu	37	5	149457727	149457727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005211.3	-1	reviewed	p.A226V	0.991	219	0%	180	23.9%	11	0%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
CSF1R	1436	genome.wustl.edu	37	5	149460470	149460470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005211.3	-1	reviewed	p.P56H	0.000	90	0%	93	22.6%	9	0%	possibly_damaging(0.931)	tolerated(0.09)	deleterious(0.674)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
PDGFRB	5159	genome.wustl.edu	37	5	149500492	149500492	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002609.3	-1	reviewed	p.R849*	1.000	227	0%	241	24.9%	32	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
PDGFRB	5159	genome.wustl.edu	37	5	149501462	149501462	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002609.3	-1	reviewed	p.Y775	0.892	317	0%	411	20.2%	29	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
PDGFRB	5159	genome.wustl.edu	37	5	149511577	149511577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002609.3	-1	reviewed	p.A403V	0.032	162	0%	158	14.6%	11	0%	benign(0.196)	tolerated(0.26)	neutral(0.053)	HMMSmart_IG,superfamily_SSF48726
SLC6A7	6534	genome.wustl.edu	37	5	149576316	149576316	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014228.3	+1	validated	p.I85	1.000	147	0%	181	14.9%	0	-	-	-	-	HMMPfam_SNF
TCOF1	6949	genome.wustl.edu	37	5	149753825	149753825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135243.1	+1	reviewed	p.P320H	0.005	30	0%	16	25%	28	46.4%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMPfam_Treacle
SYNPO	11346	genome.wustl.edu	37	5	150027891	150027891	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007286.5	+1	validated	p.A18	1.000	94	0%	76	15.8%	11	9%	-	-	-	NULL
SYNPO	11346	genome.wustl.edu	37	5	150028034	150028034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007286.5	+1	validated	p.A66V	0.000	115	0%	119	26.1%	11	27.2%	benign(0.06)	deleterious(0)	neutral(0.449)	NULL
SYNPO	11346	genome.wustl.edu	37	5	150028062	150028062	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007286.5	+1	validated	p.S75	0.000	121	0%	136	16.9%	7	0%	-	-	-	NULL
SYNPO	11346	genome.wustl.edu	37	5	150028314	150028314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007286.5	+1	validated	p.K159N	0.003	174	0%	182	18.7%	6	0%	benign(0.312)	deleterious(0)	deleterious(0.542)	NULL
SYNPO	11346	genome.wustl.edu	37	5	150028387	150028387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007286.5	+1	validated	p.A184S	0.000	180	0%	213	21.6%	12	16.6%	benign(0.141)	deleterious(0.02)	neutral(0.395)	NULL
SYNPO	11346	genome.wustl.edu	37	5	150029478	150029478	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007286.5	+1	validated	p.G547	1.000	32	0%	46	26.1%	17	23.5%	-	-	-	NULL
ZNF300	91975	genome.wustl.edu	37	5	150275788	150275788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052860.2	-1	reviewed	p.S338L	0.008	211	0%	85	24.7%	3	66.6%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF300	91975	genome.wustl.edu	37	5	150277624	150277624	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052860.2	-1	reviewed	e3+2	0.999	613	0%	251	14.3%	0	-	benign(0.139)	deleterious(0.02)	neutral(0.395)	-
ANXA6	309	genome.wustl.edu	37	5	150519741	150519741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001155.3	-1	reviewed	p.A28T	1.000	149	0%	74	21.6%	58	13.7%	benign(0)	tolerated(0.75)	neutral(0.002)	superfamily_Annexin,HMMPfam_Annexin
SLC36A2	153201	genome.wustl.edu	37	5	150715077	150715077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181776.2	-1	validated	p.N186S	0.653	514	0%	169	13%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_Aa_trans
SLC36A1	206358	genome.wustl.edu	37	5	150844114	150844114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_078483.2	+1	reviewed	p.V92M	0.988	127	0%	69	24.6%	0	-	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	HMMPfam_Aa_trans
SLC36A1	206358	genome.wustl.edu	37	5	150856248	150856248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_078483.2	+1	reviewed	p.G307V	1.000	392	0%	160	16.3%	3	66.6%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_Aa_trans
FAT2	2196	genome.wustl.edu	37	5	150917362	150917362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001447.2	-1	reviewed	p.P3062H	0.996	287	0%	184	23.4%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150925085	150925085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001447.2	-1	reviewed	p.S1868Y	0.997	151	0%	82	12.2%	0	-	possibly_damaging(0.708)	deleterious(0.02)	deleterious(0.639)	HMMSmart_SM00112,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150933922	150933922	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001447.2	-1	reviewed	e4+1	1.000	128	0%	42	19%	0	-	-	-	-	-
SPARC	6678	genome.wustl.edu	37	5	151052741	151052741	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003118.2	-1	provisional	p.G53*	1.000	392	0%	188	25%	300	0%	-	-	-	NULL
NMUR2	56923	genome.wustl.edu	37	5	151775110	151775110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020167.4	-1	reviewed	p.P283S	1.000	410	0%	204	16.2%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NMUR2	56923	genome.wustl.edu	37	5	151784066	151784066	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020167.4	-1	reviewed	p.T203	0.993	254	0%	210	18.6%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM114A2	10827	genome.wustl.edu	37	5	153372560	153372560	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018691.2	-1	validated	p.G498	0.002	404	0%	97	27.8%	20	30%	-	-	-	NULL
FAM114A2	10827	genome.wustl.edu	37	5	153381906	153381906	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018691.2	-1	validated	p.A387	1.000	433	0%	97	21.6%	20	45%	-	-	-	NULL
FAM114A2	10827	genome.wustl.edu	37	5	153390813	153390813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018691.2	-1	validated	p.E327D	1.000	232	0%	81	21%	7	28.5%	benign(0.003)	tolerated(1)	-	NULL
FAM114A2	10827	genome.wustl.edu	37	5	153406788	153406788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018691.2	-1	validated	p.G246D	1.000	394	0.3%	209	20.1%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF719
LARP1	23367	genome.wustl.edu	37	5	154179434	154179434	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015315.3	+1	validated	p.E439	0.810	188	0%	169	27.8%	34	44.1%	-	-	-	NULL
KIF4B	285643	genome.wustl.edu	37	5	154394581	154394581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099293.1	+1	provisional	p.L388M	0.915	381	0%	505	21.6%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
KIF4B	285643	genome.wustl.edu	37	5	154396290	154396290	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099293.1	+1	provisional	p.Q957H	0.992	360	0%	394	24.6%	0	-	benign(0.355)	tolerated(0.07)	neutral(0.431)	NULL
SGCD	6444	genome.wustl.edu	37	5	155771627	155771627	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000337.5	+1	reviewed	p.I44M	1.000	256	0%	99	15.2%	1	0%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_Sarcoglycan_1
SGCD	6444	genome.wustl.edu	37	5	156074491	156074491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000337.5	+1	reviewed	p.F174L	1.000	397	0%	70	31.4%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Sarcoglycan_1
HAVCR1	26762	genome.wustl.edu	37	5	156464288	156464288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099414.1	-1	reviewed	p.L308I	0.000	309	0%	133	10.5%	6	16.6%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	NULL
HAVCR2	84868	genome.wustl.edu	37	5	156522443	156522443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032782.3	-1	validated	p.R184W	0.001	188	0.5%	63	14.3%	28	0%	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	NULL
HAVCR2	84868	genome.wustl.edu	37	5	156533711	156533711	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032782.3	-1	validated	p.I107	0.389	285	0%	105	25.7%	18	0%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
MED7	9443	genome.wustl.edu	37	5	156565792	156565792	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001100816.1	-1	reviewed	p.E217	0.992	324	0%	180	18.9%	39	43.5%	-	-	-	NULL
CYFIP2	26999	genome.wustl.edu	37	5	156731326	156731326	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037332.2	+1	validated	p.Y249	0.808	138	0%	111	22.5%	7	28.5%	-	-	-	HMMPfam_FragX_IP
CYFIP2	26999	genome.wustl.edu	37	5	156746874	156746874	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037332.2	+1	validated	p.A487	1.000	150	0%	102	21.6%	17	23.5%	-	-	-	HMMPfam_FragX_IP
CYFIP2	26999	genome.wustl.edu	37	5	156747788	156747788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037332.2	+1	validated	p.A550D	1.000	75	0%	55	14.5%	9	0%	benign(0.052)	tolerated(0.65)	neutral(0.006)	HMMPfam_FragX_IP
FNDC9	408263	genome.wustl.edu	37	5	156770303	156770303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001343.3	-1	validated	p.A81V	0.526	202	0%	70	15.7%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	superfamily_FN_III-like
ADAM19	8728	genome.wustl.edu	37	5	156916182	156916182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033274.2	-1	reviewed	p.R751S	1.000	143	0%	141	22.7%	1	0%	possibly_damaging(0.521)	deleterious(0.02)	deleterious(0.558)	NULL
EBF1	1879	genome.wustl.edu	37	5	158141187	158141187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024007.3	-1	validated	p.V377L	1.000	319	0%	139	23%	0	-	benign(0.003)	tolerated(0.13)	neutral(0.253)	NULL
EBF1	1879	genome.wustl.edu	37	5	158204531	158204531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024007.3	-1	validated	p.A309V	1.000	255	0%	55	14.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
UBLCP1	134510	genome.wustl.edu	37	5	158695984	158695984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145049.3	+1	validated	p.E21K	1.000	297	0%	300	14.7%	25	40%	benign(0.001)	tolerated(0.67)	neutral(0.003)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
UBLCP1	134510	genome.wustl.edu	37	5	158701598	158701598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145049.3	+1	validated	p.T185A	1.000	271	0%	317	19.2%	37	40.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NIF,HMMSmart_SM00577,superfamily_HAD-like
ADRA1B	147	genome.wustl.edu	37	5	159344196	159344196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000679.3	+1	reviewed	p.S95I	1.000	80	0%	117	17.1%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PWWP2A	114825	genome.wustl.edu	37	5	159507685	159507685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052927.2	-1	validated	p.A548S	1.000	69	0%	49	18.4%	1	0%	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	NULL
PWWP2A	114825	genome.wustl.edu	37	5	159520243	159520243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130864.1	-1	validated	p.P472S	0.997	257	0%	134	17.9%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCNJL	79616	genome.wustl.edu	37	5	159682676	159682676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024565.5	-1	validated	p.A256V	1.000	124	0%	107	22.4%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Cyclin_C,HMMSmart_SM00385,superfamily_Cyclin-like
CCNJL	79616	genome.wustl.edu	37	5	159686664	159686664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024565.5	-1	validated	p.L180P	1.000	378	0%	191	19.4%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
C5orf54	63920	genome.wustl.edu	37	5	159821179	159821179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022090.3	-1	validated	p.G440D	0.402	150	0%	113	31%	3	66.6%	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
C5orf54	63920	genome.wustl.edu	37	5	159821692	159821692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022090.3	-1	validated	p.T269K	0.999	242	0%	139	21.6%	6	66.6%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
PTTG1	9232	genome.wustl.edu	37	5	159849389	159849389	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004219.2	+1	reviewed	p.L24	0.349	216	0%	246	28.5%	186	40.8%	-	-	-	HMMPfam_Securin
ATP10B	23120	genome.wustl.edu	37	5	160016701	160016701	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025153.2	-1	validated	p.A1216	1.000	449	0%	128	18%	0	-	-	-	-	NULL
GABRB2	2561	genome.wustl.edu	37	5	160758009	160758009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021911.2	-1	reviewed	p.L320I	1.000	348	0%	335	20%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRB2	2561	genome.wustl.edu	37	5	160972294	160972294	+	Missense_Mutation	SNP	G	G	T	rs75142291		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021911.2	-1	reviewed	p.P59H	1.000	136	0%	191	15.2%	0	-	possibly_damaging(0.705)	tolerated(0.05)	deleterious(0.599)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRA1	2554	genome.wustl.edu	37	5	161322685	161322685	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000806.5	+1	reviewed	p.V290	1.000	340	0%	143	21%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRG2	2566	genome.wustl.edu	37	5	161524828	161524828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198903.2	+1	reviewed	p.R171I	1.000	176	0%	69	18.8%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GABRG2	2566	genome.wustl.edu	37	5	161530940	161530940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198903.2	+1	reviewed	p.S266Y	1.000	429	0%	91	15.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
HMMR	3161	genome.wustl.edu	37	5	162900416	162900416	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142556.1	+1	reviewed	p.L253	0.500	245	0%	155	24.5%	7	28.5%	-	-	-	NULL
HMMR	3161	genome.wustl.edu	37	5	162901101	162901101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142556.1	+1	reviewed	p.L315I	0.095	290	0%	159	12.6%	9	22.2%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
ENSG00000251018	0	genome.wustl.edu	37	5	162910263	162910263	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000514724	-1	known	NULL	0.426	88	0%	29	27.6%	0	-	-	-	-	-
HMMR	3161	genome.wustl.edu	37	5	162911239	162911239	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142556.1	+1	reviewed	p.S650	1.000	155	0%	116	12.1%	18	44.4%	-	-	-	NULL
MAT2B	27430	genome.wustl.edu	37	5	162945230	162945230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013283.3	+1	reviewed	p.R289H	1.000	251	0%	204	12.7%	177	18.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RmlD_sub_bind,superfamily_NAD(P)-binding Rossmann-fold domains
ODZ2	57451	genome.wustl.edu	37	5	166711919	166711919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122679.1	+1	inferred	p.S26Y	1.000	73	0%	45	24.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ten_N
ODZ2	57451	genome.wustl.edu	37	5	167645508	167645508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122679.1	+1	inferred	p.A1529T	1.000	214	0.5%	99	24.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_NHL repeat
ODZ2	57451	genome.wustl.edu	37	5	167645681	167645681	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122679.1	+1	inferred	p.V1586	0.992	197	0%	107	29.9%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
ODZ2	57451	genome.wustl.edu	37	5	167674052	167674052	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122679.1	+1	inferred	p.T2027	0.039	93	0%	61	24.6%	0	-	-	-	-	HMMPfam_RHS_repeat,superfamily_Concanavalin A-like lectins/glucanases
ODZ2	57451	genome.wustl.edu	37	5	167687378	167687378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122679.1	+1	inferred	p.P2499L	1.000	384	0%	242	13.2%	0	-	possibly_damaging(0.476)	tolerated(0.08)	neutral(0.457)	NULL
ODZ2	57451	genome.wustl.edu	37	5	167689500	167689500	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122679.1	+1	inferred	p.F2661	1.000	27	0%	18	22.2%	1	100%	-	-	-	NULL
WWC1	23286	genome.wustl.edu	37	5	167850783	167850783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015238.2	+1	reviewed	p.A507D	0.574	72	0%	45	17.8%	48	22.9%	benign(0.219)	tolerated(0.34)	neutral(0.044)	NULL
RARS	5917	genome.wustl.edu	37	5	167920968	167920968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002887.3	+1	reviewed	p.D147N	0.529	412	0%	230	24.8%	37	54%	benign(0)	tolerated(0.49)	neutral(0.011)	HMMPfam_Arg_tRNA_synt_N,superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain
PANK3	79646	genome.wustl.edu	37	5	167988459	167988459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024594.2	-1	reviewed	p.A292D	1.000	284	0%	262	14.1%	7	57.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Fumble,superfamily_SSF53067
ENSG00000233913	0	genome.wustl.edu	37	5	168043964	168043964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000421908	+1	known	p.R203H	0.983	16	0%	19	21.1%	981	0%	-	-	-	NULL
CCDC99	54908	genome.wustl.edu	37	5	169020467	169020467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017785.4	+1	validated	p.R149H	0.026	214	0%	123	15.4%	16	50%	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
CCDC99	54908	genome.wustl.edu	37	5	169023691	169023691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017785.4	+1	validated	p.L340M	1.000	132	0%	78	17.9%	19	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC99	54908	genome.wustl.edu	37	5	169026083	169026083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017785.4	+1	validated	p.R415I	0.999	191	0%	85	15.3%	22	40.9%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CCDC99	54908	genome.wustl.edu	37	5	169031139	169031139	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017785.4	+1	validated	p.T582	0.063	214	0%	76	25%	22	50%	-	-	-	NULL
FBXW11	23291	genome.wustl.edu	37	5	171337627	171337627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012300.2	-1	reviewed	p.N108D	1.000	158	0%	61	31.1%	9	44.4%	benign(0.152)	tolerated(0.23)	neutral(0.055)	NULL
UBTD2	92181	genome.wustl.edu	37	5	171661194	171661194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152277.2	-1	validated	p.A80V	1.000	404	0%	166	21.1%	10	20%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
SH3PXD2B	285590	genome.wustl.edu	37	5	171765883	171765883	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017995.2	-1	validated	p.S742	0.000	112	0%	66	15.2%	3	33.3%	-	-	-	NULL
SH3PXD2B	285590	genome.wustl.edu	37	5	171766897	171766897	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017995.2	-1	validated	p.G404	1.000	172	0%	133	23.3%	2	50%	-	-	-	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
SH3PXD2B	285590	genome.wustl.edu	37	5	171833281	171833281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017995.2	-1	validated	p.G78C	1.000	300	0%	196	23%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PX,HMMSmart_PX,superfamily_PX
CREBRF	153222	genome.wustl.edu	37	5	172513604	172513604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153607.2	+1	validated	p.S37L	1.000	247	0%	112	15.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CPEB4	80315	genome.wustl.edu	37	5	173317032	173317032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030627.2	+1	validated	p.S99N	0.997	228	0%	286	21%	1	0%	benign(0.004)	tolerated(0.31)	neutral(0.027)	NULL
CPEB4	80315	genome.wustl.edu	37	5	173372016	173372016	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030627.2	+1	validated	p.G443	0.998	424	0%	149	28.9%	2	50%	-	-	-	NULL
CPEB4	80315	genome.wustl.edu	37	5	173377042	173377042	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030627.2	+1	validated	p.L542	1.000	500	0%	186	12.4%	3	33.3%	-	-	-	HMMSmart_SM00360
CPLX2	10814	genome.wustl.edu	37	5	175307224	175307224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000393746	+1	known	p.Q175H	0.570	13	0%	16	25%	0	-	unknown(0)	-	-	NULL
THOC3	84321	genome.wustl.edu	37	5	175388403	175388403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032361.2	-1	validated	p.A222T	1.000	431	0%	211	18%	171	18.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
THOC3	84321	genome.wustl.edu	37	5	175394164	175394164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032361.2	-1	validated	p.R125H	1.000	897	0.1%	827	10.9%	101	11.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
C5orf25	375484	genome.wustl.edu	37	5	175717398	175717398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000420396	+1	known	p.G272W	0.388	275	0%	204	19.1%	11	45.4%	possibly_damaging(0.885)	deleterious(0.01)	deleterious(0.752)	NULL
ARL10	285598	genome.wustl.edu	37	5	175798733	175798733	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173664.4	+1	validated	p.S190	0.965	177	0%	185	20.5%	0	-	-	-	-	HMMPfam_Arf,superfamily_SSF52540
CLTB	1212	genome.wustl.edu	37	5	175819910	175819910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000310418	-1	known	p.E185D	0.991	401	0%	332	21.4%	419	40.5%	benign(0.002)	tolerated(0.19)	neutral(0.050)	HMMPfam_Clathrin_lg_ch
FAF2	23197	genome.wustl.edu	37	5	175927122	175927122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014613.2	+1	reviewed	p.R377Q	1.000	257	0.4%	65	21.5%	23	52.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_UBX,superfamily_SSF54236
FAF2	23197	genome.wustl.edu	37	5	175933835	175933835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014613.2	+1	reviewed	p.P408S	1.000	320	0%	146	26%	32	43.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UBX,superfamily_SSF54236
RNF44	22838	genome.wustl.edu	37	5	175958554	175958554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014901.4	-1	reviewed	p.Q125H	0.994	62	0%	72	13.9%	45	13.3%	probably_damaging(0.997)	tolerated(0.25)	deleterious(0.503)	NULL
CDHR2	54825	genome.wustl.edu	37	5	175998280	175998280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017675.4	+1	reviewed	p.A128T	0.000	171	0%	157	14%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	superfamily_Cadherin
CDHR2	54825	genome.wustl.edu	37	5	176004399	176004399	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017675.4	+1	reviewed	e12-1	1.000	50	0%	35	11.4%	0	-	-	-	-	-
CDHR2	54825	genome.wustl.edu	37	5	176005062	176005062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017675.4	+1	reviewed	p.G514S	0.975	69	0%	40	25%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
HK3	3101	genome.wustl.edu	37	5	176314302	176314302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002115.2	-1	reviewed	p.T546M	1.000	90	0%	106	20.8%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hexokinase_1,superfamily_SSF53067
HK3	3101	genome.wustl.edu	37	5	176315834	176315834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002115.2	-1	reviewed	p.G316S	1.000	146	0%	95	21.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hexokinase_2,superfamily_SSF53067
UIMC1	51720	genome.wustl.edu	37	5	176333019	176333019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016290.3	-1	provisional	p.A648S	0.992	155	0%	78	14.1%	35	25.7%	benign(0.015)	tolerated(0.55)	neutral(0.007)	NULL
FGFR4	2264	genome.wustl.edu	37	5	176517828	176517828	+	Splice_Site	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002011.3	+1	reviewed	e3+2	1.000	214	0%	209	12.4%	0	-	-	-	-	-
FGFR4	2264	genome.wustl.edu	37	5	176520506	176520506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002011.3	+1	reviewed	p.S451G	1.000	54	0%	60	10%	7	0%	benign(0.053)	deleterious(0)	neutral(0.448)	NULL
FGFR4	2264	genome.wustl.edu	37	5	176522608	176522608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002011.3	+1	reviewed	p.G569C	0.967	48	0%	40	12.5%	12	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MXD3	83463	genome.wustl.edu	37	5	176737699	176737699	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031300.3	-1	reviewed	e3-1	1.000	108	0%	152	14.5%	1	100%	-	-	-	-
LMAN2	10960	genome.wustl.edu	37	5	176764472	176764472	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006816.2	-1	reviewed	p.D189	0.997	82	0%	68	30.9%	453	39.7%	-	-	-	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl
RGS14	10636	genome.wustl.edu	37	5	176795181	176795181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006480.4	+1	reviewed	p.A255T	0.001	99	0%	143	16.8%	19	36.8%	benign(0.156)	tolerated(0.58)	neutral(0.019)	NULL
SLC34A1	6569	genome.wustl.edu	37	5	176815166	176815166	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003052.4	+1	reviewed	p.E272	1.000	111	0%	98	23.5%	0	-	-	-	-	HMMPfam_Na_Pi_cotrans
SLC34A1	6569	genome.wustl.edu	37	5	176821064	176821064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003052.4	+1	reviewed	p.L348M	1.000	96	0%	113	22.1%	0	-	benign(0.049)	tolerated(0.11)	neutral(0.275)	NULL
SLC34A1	6569	genome.wustl.edu	37	5	176825274	176825274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003052.4	+1	reviewed	p.A636V	0.999	18	0%	29	24.1%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
GRK6	2870	genome.wustl.edu	37	5	176862046	176862046	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002082.3	+1	reviewed	p.I327	1.000	114	0%	121	26.4%	55	29%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DBN1	1627	genome.wustl.edu	37	5	176885490	176885490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080881.2	-1	reviewed	p.A451T	0.018	207	0%	189	27.5%	151	45%	benign(0.147)	tolerated(0.27)	neutral(0.046)	NULL
DBN1	1627	genome.wustl.edu	37	5	176885513	176885513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080881.2	-1	reviewed	p.A443D	0.003	141	0%	120	15.8%	122	6.5%	benign(0.26)	deleterious(0.03)	neutral(0.392)	NULL
DBN1	1627	genome.wustl.edu	37	5	176893959	176893959	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080881.2	-1	reviewed	p.E222	1.000	67	0%	92	21.7%	106	40.5%	-	-	-	NULL
DBN1	1627	genome.wustl.edu	37	5	176894051	176894051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080881.2	-1	reviewed	p.L192M	1.000	69	0%	96	22.9%	88	47.7%	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	NULL
DOK3	79930	genome.wustl.edu	37	5	176931321	176931321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024872.2	-1	validated	p.C385Y	0.986	49	0%	39	35.9%	15	0%	possibly_damaging(0.813)	deleterious(0.01)	deleterious(0.713)	NULL
LOC202181	202181	genome.wustl.edu	37	5	177059140	177059140	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_026921.1	-1	predicted	NULL	0.007	368	0%	206	23.8%	0	-	-	-	-	-
LOC202181	202181	genome.wustl.edu	37	5	177059468	177059468	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_026921.1	-1	predicted	NULL	0.871	107	0%	54	13%	3	0%	-	-	-	-
FAM153A	285596	genome.wustl.edu	37	5	177171896	177171896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173663.3	-1	predicted	p.A34V	0.000	554	0.2%	155	14.8%	0	-	benign(0.002)	tolerated(0.12)	neutral(0.261)	NULL
NHP2	55651	genome.wustl.edu	37	5	177576824	177576824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017838.3	-1	reviewed	p.A118T	0.991	83	0%	90	14.4%	313	27.4%	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_Ribosomal_L7Ae,superfamily_SSF55315
COL23A1	91522	genome.wustl.edu	37	5	177674804	177674804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173465.3	-1	validated	p.P414H	0.955	60	0%	45	24.4%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_Collagen
CLK4	57396	genome.wustl.edu	37	5	178043936	178043936	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020666.2	-1	reviewed	p.D163	1.000	302	0%	253	21.3%	7	42.8%	unknown(0)	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ZNF354B	117608	genome.wustl.edu	37	5	178310123	178310123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_058230.2	+1	validated	p.I224V	0.246	135	0%	77	13%	2	0%	probably_damaging(0.972)	tolerated(0.42)	neutral(0.428)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF454	285676	genome.wustl.edu	37	5	178392532	178392532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182594.2	+1	validated	p.R376I	1.000	172	0%	121	20.7%	1	0%	possibly_damaging(0.904)	deleterious(0)	deleterious(0.803)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF879	345462	genome.wustl.edu	37	5	178459517	178459517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136116.1	+1	provisional	p.V190I	0.255	205	0%	192	20.8%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	superfamily_C2H2 and C2HC zinc fingers
ZNF354C	30832	genome.wustl.edu	37	5	178506215	178506215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014594.1	+1	provisional	p.S261Y	0.002	142	0%	95	22.1%	0	-	possibly_damaging(0.66)	deleterious(0.01)	deleterious(0.639)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ADAMTS2	9509	genome.wustl.edu	37	5	178548700	178548700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014244.2	-1	reviewed	p.R1047H	0.793	101	0%	143	22.4%	4	0%	probably_damaging(0.965)	tolerated(0.11)	deleterious(0.678)	NULL
ENSG00000228259	0	genome.wustl.edu	37	5	179078829	179078829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000425471	+1	known	p.E104D	0.001	291	0%	349	20.6%	0	-	unknown(0)	tolerated(0.17)	-	NULL
LOC100289470	100289470	genome.wustl.edu	37	5	179079416	179079416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342585.1	+1	model	p.D269Y	0.000	598	0%	574	22.1%	0	-	unknown(0)	-	-	NULL
MAML1	9794	genome.wustl.edu	37	5	179192586	179192586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014757.4	+1	reviewed	p.A192V	0.911	69	0%	86	19.8%	6	16.6%	possibly_damaging(0.731)	tolerated(0.08)	deleterious(0.567)	NULL
MGAT4B	11282	genome.wustl.edu	37	5	179225552	179225552	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_054013.3	-1	reviewed	p.D476	1.000	82	0%	108	20.4%	218	40.3%	-	-	-	NULL
MGAT4B	11282	genome.wustl.edu	37	5	179226507	179226507	+	Missense_Mutation	SNP	G	G	A	rs182575029	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_054013.3	-1	reviewed	p.A362V	1.000	112	0%	113	28.3%	204	45%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_Glyco_transf_54
SQSTM1	8878	genome.wustl.edu	37	5	179250982	179250982	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003900.4	+1	reviewed	p.C142	0.999	53	0%	51	23.5%	556	37.5%	-	-	-	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1
SQSTM1	8878	genome.wustl.edu	37	5	179263654	179263654	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000510187	+1	known	p.A378	0.001	313	0%	337	22.3%	1202	39.2%	-	-	-	NULL
TBC1D9B	23061	genome.wustl.edu	37	5	179299970	179299970	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198868.2	-1	validated	p.A779	0.324	241	0.4%	201	21.9%	57	38.5%	-	-	-	NULL
MAPK9	5601	genome.wustl.edu	37	5	179669622	179669622	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002752.4	-1	reviewed	p.L274	0.998	453	0%	284	23.2%	25	32%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
GFPT2	9945	genome.wustl.edu	37	5	179762903	179762903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005110.2	-1	provisional	p.A89T	1.000	279	0%	179	27.4%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_GATase_2,superfamily_SSF56235
CNOT6	57472	genome.wustl.edu	37	5	179998396	179998396	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015455.3	+1	reviewed	p.G475	1.000	363	0%	128	21.9%	13	30.7%	-	-	-	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
FLT4	2324	genome.wustl.edu	37	5	180040067	180040067	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182925.4	-1	reviewed	p.C1125	1.000	45	0%	88	22.7%	2	50%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
FLT4	2324	genome.wustl.edu	37	5	180046696	180046696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182925.4	-1	reviewed	p.S872R	1.000	29	0%	59	23.7%	2	0%	possibly_damaging(0.826)	deleterious(0)	deleterious(0.758)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP
OR2Y1	134083	genome.wustl.edu	37	5	180166733	180166733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001657.1	-1	provisional	p.S109F	0.001	107	0%	98	20.4%	0	-	possibly_damaging(0.921)	deleterious(0.04)	deleterious(0.720)	HMMPfam_7tm_1,superfamily_SSF81321
MGAT1	4245	genome.wustl.edu	37	5	180218664	180218664	+	Silent	SNP	C	C	T	rs190419483	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114617.1	-1	reviewed	p.T436	0.928	35	0%	36	22.2%	95	30.5%	-	-	-	HMMPfam_GNT-I,superfamily_SSF53448
BTNL8	79908	genome.wustl.edu	37	5	180335825	180335825	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040462.2	+1	validated	p.I97L	0.001	215	0%	221	12.2%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
BTNL8	79908	genome.wustl.edu	37	5	180374690	180374690	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024850.2	+1	validated	p.E284	0.132	270	0%	138	14.5%	0	-	-	-	-	NULL
BTNL8	79908	genome.wustl.edu	37	5	180376240	180376240	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040462.2	+1	validated	p.E279D	0.136	434	0%	210	18.1%	0	-	possibly_damaging(0.806)	tolerated(0.12)	deleterious(0.564)	NULL
BTNL3	10917	genome.wustl.edu	37	5	180420029	180420029	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_197975.1	+1	validated	p.K89T	0.311	292	0%	196	16.3%	0	-	benign(0.235)	tolerated(0.61)	neutral(0.028)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
OR2V1	26693	genome.wustl.edu	37	5	180551651	180551651	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000329365	-1	known	p.S218	1.000	185	0%	119	16.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2V2	285659	genome.wustl.edu	37	5	180581986	180581986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206880.1	+1	provisional	p.L15P	0.230	392	0%	234	21.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF81321
OR2V2	285659	genome.wustl.edu	37	5	180582125	180582125	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206880.1	+1	provisional	p.Y61*	1.000	708	0%	431	19.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TRIM41	90933	genome.wustl.edu	37	5	180662362	180662362	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201627.1	+1	validated	p.E514*	0.997	327	0%	342	13.2%	41	24.3%	-	-	-	NULL
TRIM52	84851	genome.wustl.edu	37	5	180687445	180687445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032765.2	-1	provisional	p.E124K	0.969	263	0%	310	19.4%	1	0%	benign(0.028)	deleterious(0)	neutral(0.446)	HMMSmart_RING,superfamily_SSF57850
IRF4	3662	genome.wustl.edu	37	6	398912	398912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002460.2	+1	validated	p.S241Y	1.000	146	0%	152	19.7%	2	0%	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	NULL
IRF4	3662	genome.wustl.edu	37	6	401609	401609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002460.2	+1	validated	p.L311M	0.998	53	0%	58	20.7%	4	0%	probably_damaging(0.999)	tolerated(0.34)	deleterious(0.513)	superfamily_SMAD/FHA domain,HMMPfam_IRF-3
EXOC2	55770	genome.wustl.edu	37	6	556014	556014	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018303.4	-1	reviewed	e18-1	1.000	440	0%	332	20.5%	0	-	-	-	-	-
EXOC2	55770	genome.wustl.edu	37	6	576874	576874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018303.4	-1	reviewed	p.G401C	0.002	164	0%	183	28.4%	8	25%	benign(0.1)	deleterious(0.04)	neutral(0.356)	NULL
NQO2	4835	genome.wustl.edu	37	6	3010360	3010360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000904.3	+1	validated	p.V37I	0.992	178	0%	159	16.4%	38	10.5%	possibly_damaging(0.642)	deleterious(0.04)	deleterious(0.574)	HMMPfam_Flavodoxin_2,superfamily_Flavoproteins
RIPK1	8737	genome.wustl.edu	37	6	3113322	3113322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003804.3	+1	validated	p.P589T	1.000	148	0.7%	105	21.9%	10	20%	probably_damaging(0.985)	tolerated(0.06)	deleterious(0.754)	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain
BPHL	670	genome.wustl.edu	37	6	3152762	3152762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004332.2	+1	reviewed	p.R277C	0.722	453	0%	473	22.8%	35	17.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
TUBB2A	7280	genome.wustl.edu	37	6	3156300	3156300	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001069.2	-1	validated	p.N48	1.000	447	0.2%	569	18.6%	3	66.6%	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
PRPF4B	8899	genome.wustl.edu	37	6	4032788	4032788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003913.4	+1	reviewed	p.P346H	1.000	92	0%	54	27.8%	8	25%	probably_damaging(0.999)	tolerated(0.56)	deleterious(0.497)	NULL
C6orf201	404220	genome.wustl.edu	37	6	4130389	4130389	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001085401.1	+1	validated	p.C132	0.001	413	0%	342	18.7%	0	-	-	-	-	NULL
CDYL	9425	genome.wustl.edu	37	6	4892238	4892238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004824.3	+1	reviewed	p.E106K	0.984	226	0%	155	21.3%	11	45.4%	benign(0)	tolerated(1)	-	NULL
RPP40	10799	genome.wustl.edu	37	6	5004147	5004147	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006638.2	-1	validated	p.R30	0.992	47	0%	43	14%	10	10%	-	-	-	NULL
FARS2	10667	genome.wustl.edu	37	6	5613464	5613464	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006567.3	+1	reviewed	p.Y376	0.875	541	0%	192	17.7%	43	23.2%	-	-	-	HMMPfam_FDX-ACB,superfamily_Fdx_AntiC_bd
F13A1	2162	genome.wustl.edu	37	6	6174875	6174875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000129.3	-1	reviewed	p.T562N	0.996	787	0%	233	22.3%	3	0%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_Transglut_C,superfamily_Transglut_C
F13A1	2162	genome.wustl.edu	37	6	6225063	6225063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000129.3	-1	reviewed	p.V277I	1.000	119	0%	58	22.4%	0	-	benign(0.074)	tolerated(0.58)	neutral(0.010)	superfamily_SSF54001
RREB1	6239	genome.wustl.edu	37	6	7229354	7229354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003699.3	+1	reviewed	p.A341V	0.000	49	0%	54	29.6%	6	50%	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
DSP	1832	genome.wustl.edu	37	6	7581337	7581337	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004415.2	+1	reviewed	p.D1638	0.149	47	0%	37	13.5%	12	0%	-	-	-	NULL
DSP	1832	genome.wustl.edu	37	6	7581745	7581745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004415.2	+1	reviewed	p.Q1774H	1.000	103	0%	68	16.2%	14	42.8%	probably_damaging(0.983)	deleterious(0.04)	deleterious(0.778)	superfamily_Prefoldin,superfamily_tRNA-binding arm
DSP	1832	genome.wustl.edu	37	6	7584313	7584313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004415.2	+1	reviewed	p.G2273D	1.000	236	0.4%	214	22.9%	33	54.5%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
BMP6	654	genome.wustl.edu	37	6	7880439	7880439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001718.4	+1	reviewed	p.N469D	1.000	469	0%	287	22.3%	3	0%	possibly_damaging(0.608)	tolerated(0.16)	neutral(0.270)	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501
EEF1E1	9521	genome.wustl.edu	37	6	8097669	8097669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004280.4	-1	reviewed	p.S40I	0.986	356	0%	309	11.3%	60	36.6%	possibly_damaging(0.509)	deleterious(0.04)	deleterious(0.519)	NULL
SLC35B3	51000	genome.wustl.edu	37	6	8417704	8417704	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142540.1	-1	validated	p.G268	0.997	245	0%	130	12.3%	32	31.2%	-	-	-	HMMPfam_UAA
TFAP2A	7020	genome.wustl.edu	37	6	10415218	10415218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003220.2	-1	reviewed	p.M1L	1.000	192	0%	208	14.9%	17	41.1%	benign(0)	-	-	NULL
GCNT2	2651	genome.wustl.edu	37	6	10586757	10586757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145655.3	+1	reviewed	p.A179T	0.025	120	0%	51	13.7%	1	100%	benign(0.01)	tolerated(0.59)	neutral(0.005)	HMMPfam_Branch
C6orf52	347744	genome.wustl.edu	37	6	10687392	10687392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145020.1	-1	provisional	p.P26H	0.011	163	0%	80	20%	5	0%	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	NULL
ERVFRD-1	405754	genome.wustl.edu	37	6	11104343	11104343	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207582.2	-1	validated	p.T401S	0.295	111	0%	94	26.6%	0	-	benign(0.061)	tolerated(0.26)	neutral(0.038)	HMMPfam_TLV_coat
NEDD9	4739	genome.wustl.edu	37	6	11190845	11190845	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142393.1	-1	validated	p.A419	0.176	156	0%	108	25.9%	26	26.9%	-	-	-	HMMPfam_Serine_rich
HIVEP1	3096	genome.wustl.edu	37	6	12120471	12120471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002114.2	+1	validated	p.S148Y	0.001	160	0%	117	29.1%	0	-	possibly_damaging(0.915)	deleterious(0.04)	deleterious(0.716)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12121951	12121951	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002114.2	+1	validated	p.T641	0.000	107	0%	42	21.4%	3	66.6%	-	-	-	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12123777	12123777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002114.2	+1	validated	p.Q1250R	0.942	169	0%	98	17.3%	1	0%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12125217	12125217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002114.2	+1	validated	p.S1730Y	0.992	146	0%	74	21.6%	1	100%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12163904	12163904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002114.2	+1	validated	p.G2456E	0.965	128	0%	119	16.8%	11	45.4%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
PHACTR1	221692	genome.wustl.edu	37	6	13206249	13206249	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000415087	+1	known	p.T124M	0.922	25	0%	26	42.3%	0	-	-	-	-	NULL
TBC1D7	51256	genome.wustl.edu	37	6	13316820	13316820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143964.1	-1	validated	p.D168N	1.000	210	0%	147	15.6%	44	47.7%	benign(0.341)	tolerated(0.11)	neutral(0.379)	superfamily_Ypt/Rab-GAP domain of gyp1p
GFOD1	54438	genome.wustl.edu	37	6	13470470	13470470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033069.2	-1	predicted	p.A15T	0.000	87	0%	34	23.5%	2	50%	unknown(0)	-	-	NULL
SIRT5	23408	genome.wustl.edu	37	6	13592007	13592007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012241.3	+1	reviewed	p.R119H	0.088	53	0%	36	25%	22	50%	benign(0.114)	tolerated(0.42)	neutral(0.023)	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain
RANBP9	10048	genome.wustl.edu	37	6	13632663	13632663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005493.2	-1	reviewed	p.A629V	0.998	544	0%	280	26.4%	57	42.1%	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00757,HMMPfam_RanBPM_CRA
JARID2	3720	genome.wustl.edu	37	6	15497248	15497248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004973.2	+1	reviewed	p.E598K	1.000	29	3.4%	36	25%	8	25%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
FAM8A1	51439	genome.wustl.edu	37	6	17602827	17602827	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016255.2	+1	validated	p.E240A	1.000	290	0%	503	27.2%	3	66.6%	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	NULL
NUP153	9972	genome.wustl.edu	37	6	17628931	17628931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005124.2	-1	reviewed	p.A1167T	0.008	206	0%	123	25.2%	29	34.4%	benign(0.001)	tolerated(0.15)	neutral(0.241)	NULL
NUP153	9972	genome.wustl.edu	37	6	17629205	17629205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005124.2	-1	reviewed	p.M1075I	0.001	118	0%	55	12.7%	20	30%	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
KIF13A	63971	genome.wustl.edu	37	6	17779227	17779227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022113.4	-1	validated	p.R1348Q	0.986	435	0.2%	223	11.7%	3	33.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
KIF13A	63971	genome.wustl.edu	37	6	17800206	17800206	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022113.4	-1	validated	p.R865*	1.000	333	0%	160	26.9%	3	0%	-	-	-	NULL
KDM1B	221656	genome.wustl.edu	37	6	18207661	18207661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153042.3	+1	validated	p.F332L	1.000	327	0%	141	17%	5	60%	benign(0.428)	tolerated(0.48)	neutral(0.150)	HMMPfam_Amino_oxidase,superfamily_SSF51905
MBOAT1	154141	genome.wustl.edu	37	6	20102542	20102542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080480.1	-1	provisional	p.S488F	0.998	438	0%	362	23.8%	38	60.5%	possibly_damaging(0.848)	deleterious(0.02)	deleterious(0.709)	NULL
E2F3	1871	genome.wustl.edu	37	6	20481589	20481589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001949.3	+1	reviewed	p.D220N	1.000	233	0.4%	69	21.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E2F_TDP,superfamily_SSF46785
MRS2	57380	genome.wustl.edu	37	6	24409801	24409801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020662.2	+1	validated	p.E138D	1.000	286	0%	350	23.7%	7	0%	probably_damaging(0.991)	tolerated(0.33)	neutral(0.468)	HMMPfam_CorA
MRS2	57380	genome.wustl.edu	37	6	24412499	24412499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020662.2	+1	validated	p.R155H	1.000	268	0%	340	17.9%	6	66.6%	benign(0.013)	tolerated(0.56)	neutral(0.007)	HMMPfam_CorA
ALDH5A1	7915	genome.wustl.edu	37	6	24515539	24515539	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170740.1	+1	reviewed	e6+1	1.000	236	0%	127	17.3%	0	-	-	-	-	-
FAM65B	9750	genome.wustl.edu	37	6	24843333	24843333	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014722.2	-1	validated	p.S559	0.033	272	0.4%	74	20.3%	2	50%	-	-	-	NULL
FAM65B	9750	genome.wustl.edu	37	6	24843392	24843392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014722.2	-1	validated	p.A540T	0.962	228	0%	50	22%	4	0%	benign(0.386)	tolerated(0.09)	neutral(0.420)	NULL
FAM65B	9750	genome.wustl.edu	37	6	24875953	24875953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014722.2	-1	validated	p.A23T	1.000	96	0%	39	20.5%	4	0%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	NULL
LRRC16A	55604	genome.wustl.edu	37	6	25600666	25600666	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017640.5	+1	validated	p.R1082*	1.000	77	0%	42	23.8%	9	11.1%	-	-	-	NULL
SCGN	10590	genome.wustl.edu	37	6	25661842	25661842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000334979	+1	known	p.L49I	0.019	408	0%	289	14.9%	0	-	unknown(0)	-	-	NULL
SLC17A4	10050	genome.wustl.edu	37	6	25777130	25777130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005495.2	+1	validated	p.A404V	0.000	140	0%	51	27.5%	0	-	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC17A3	10786	genome.wustl.edu	37	6	25851091	25851091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098486.1	-1	validated	p.V243I	0.880	428	0%	145	22.1%	0	-	benign(0.076)	tolerated(0.5)	neutral(0.015)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
HIST1H1A	3024	genome.wustl.edu	37	6	26017446	26017446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005325.3	-1	reviewed	p.P172H	0.580	379	0%	592	22.8%	0	-	unknown(0)	deleterious(0.02)	-	NULL
HIST1H2BB	3018	genome.wustl.edu	37	6	26043842	26043842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021062.2	-1	reviewed	p.S15Y	0.989	373	0%	346	23.7%	0	-	possibly_damaging(0.883)	deleterious(0)	deleterious(0.789)	superfamily_Histone-fold
HIST1H3C	8352	genome.wustl.edu	37	6	26045833	26045833	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003531.2	+1	reviewed	p.K65	1.000	75	0%	54	16.7%	0	-	-	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
HIST1H2BC	8347	genome.wustl.edu	37	6	26124040	26124040	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003526.2	-1	reviewed	p.K31	1.000	343	0%	288	20.8%	3	100%	-	-	-	HMMSmart_SM00427,superfamily_Histone-fold
HIST1H3E	8353	genome.wustl.edu	37	6	26225632	26225632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003532.2	+1	reviewed	p.R84C	1.000	183	0%	198	22.7%	3	0%	probably_damaging(0.993)	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
BTN3A2	11118	genome.wustl.edu	37	6	26368897	26368897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007047.3	+1	reviewed	p.E64K	1.000	817	0%	267	20.2%	18	22.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
BTN3A2	11118	genome.wustl.edu	37	6	26370573	26370573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007047.3	+1	reviewed	p.E153K	0.000	446	0%	177	20.9%	26	15.3%	benign(0.066)	tolerated(0.57)	neutral(0.010)	HMMPfam_V-set,superfamily_SSF48726
BTN2A2	10385	genome.wustl.edu	37	6	26385503	26385503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006995.3	+1	reviewed	p.V119I	0.996	356	0%	193	22.8%	3	0%	benign(0.085)	tolerated(0.12)	neutral(0.267)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
BTN2A2	10385	genome.wustl.edu	37	6	26388485	26388485	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006995.3	+1	reviewed	p.L229	0.972	305	0%	136	25%	8	12.5%	-	-	-	HMMPfam_C2-set_2,superfamily_Immunoglobulin
BTN2A2	10385	genome.wustl.edu	37	6	26390424	26390424	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006995.3	+1	reviewed	p.E306*	0.488	412	0%	196	21.9%	3	0%	-	-	-	NULL
BTN2A2	10385	genome.wustl.edu	37	6	26392822	26392822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006995.3	+1	reviewed	p.R400I	0.002	601	0%	265	26%	7	0%	benign(0.249)	deleterious(0.01)	neutral(0.431)	HMMPfam_SPRY,HMMSmart_SM00449
BTN3A1	11119	genome.wustl.edu	37	6	26406211	26406211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007048.5	+1	validated	p.L54M	0.143	640	0%	246	24.4%	21	23.8%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
BTN3A3	10384	genome.wustl.edu	37	6	26452183	26452183	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006994.4	+1	validated	p.T433	0.005	471	0%	186	19.4%	37	8.1%	-	-	-	HMMPfam_SPRY,HMMSmart_SPRY
BTN2A1	11120	genome.wustl.edu	37	6	26459992	26459992	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007049.2	+1	reviewed	p.T122	0.166	240	0%	172	24.4%	18	27.7%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ENSG00000250311	0	genome.wustl.edu	37	6	26476648	26476648	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000511597	-1	known	NULL	0.865	117	0%	54	11.1%	2	50%	-	-	-	-
ENSG00000250311	0	genome.wustl.edu	37	6	26478194	26478194	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000511597	-1	known	NULL	0.941	87	0%	25	16%	0	-	-	-	-	-
ZNF322	79692	genome.wustl.edu	37	6	26638329	26638329	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024639.3	-1	validated	p.G151	0.942	424	0%	229	8.3%	5	100%	-	-	-	superfamily_SSF57667
PRSS16	10279	genome.wustl.edu	37	6	27216665	27216665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005865.3	+1	reviewed	p.G93R	0.011	227	0%	246	22.4%	0	-	possibly_damaging(0.513)	deleterious(0)	deleterious(0.617)	HMMPfam_Peptidase_S28,superfamily_SSF53474
PRSS16	10279	genome.wustl.edu	37	6	27220683	27220683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005865.3	+1	reviewed	p.G369C	1.000	291	0%	256	25.4%	24	29.1%	unknown(0)	tolerated(0.18)	-	HMMPfam_Peptidase_S28,superfamily_SSF53474
PRSS16	10279	genome.wustl.edu	37	6	27222602	27222602	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005865.3	+1	reviewed	p.S427	1.000	91	1.1%	99	30.3%	5	20%	-	-	-	HMMPfam_Peptidase_S28,superfamily_SSF53474
ZNF184	7738	genome.wustl.edu	37	6	27419214	27419214	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007149.2	-1	validated	p.S708	0.989	531	0%	213	17.8%	10	30%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF184	7738	genome.wustl.edu	37	6	27419911	27419911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007149.2	-1	validated	p.C476Y	0.998	329	0%	119	18.5%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF184	7738	genome.wustl.edu	37	6	27420060	27420060	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007149.2	-1	validated	p.A426	1.000	419	0%	190	20%	4	25%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF184	7738	genome.wustl.edu	37	6	27420146	27420146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007149.2	-1	validated	p.A398T	1.000	228	0%	130	11.5%	4	50%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF184	7738	genome.wustl.edu	37	6	27420426	27420426	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007149.2	-1	validated	p.K304	0.990	279	0%	145	22.8%	7	28.5%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
HIST1H2BL	8340	genome.wustl.edu	37	6	27775665	27775665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003519.3	-1	reviewed	p.S7Y	1.000	296	0%	316	23.1%	1	0%	possibly_damaging(0.549)	deleterious(0)	deleterious(0.631)	superfamily_Histone-fold
HIST1H2AL	8332	genome.wustl.edu	37	6	27833519	27833519	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003511.2	+1	reviewed	p.G129	1.000	239	0%	210	25.7%	0	-	-	-	-	superfamily_Histone-fold
ZNF192	7745	genome.wustl.edu	37	6	28121473	28121473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006298.2	+1	validated	p.R472M	0.802	170	0%	152	21.1%	0	-	probably_damaging(0.995)	tolerated(0.15)	deleterious(0.699)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PGBD1	84547	genome.wustl.edu	37	6	28269694	28269694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032507.3	+1	reviewed	p.R688H	0.797	423	0%	138	18.8%	2	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
PGBD1	84547	genome.wustl.edu	37	6	28269880	28269880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032507.3	+1	reviewed	p.R750M	0.029	307	0%	102	17.6%	3	0%	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	NULL
ZNF323	64288	genome.wustl.edu	37	6	28293769	28293769	+	RNA	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_024164.1	-1	validated	NULL	0.001	16	0%	21	28.6%	6	66.6%	-	-	-	-
ZNF323	64288	genome.wustl.edu	37	6	28295181	28295181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135215.1	-1	validated	p.L171I	0.000	462	0%	225	12.9%	12	0%	benign(0.005)	tolerated(0.2)	neutral(0.049)	NULL
ZNF323	64288	genome.wustl.edu	37	6	28297227	28297227	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135215.1	-1	validated	p.I78	1.000	206	0%	144	22.9%	3	66.6%	-	-	-	HMMPfam_SCAN,HMMSmart_SCAN
ZKSCAN3	80317	genome.wustl.edu	37	6	28333278	28333278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024493.2	+1	validated	p.S278L	0.000	140	5.7%	81	45.7%	2	100%	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
ZKSCAN3	80317	genome.wustl.edu	37	6	28333383	28333383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024493.2	+1	validated	p.R313Q	0.002	304	0%	199	21.6%	0	-	benign(0.419)	tolerated(0.35)	neutral(0.157)	superfamily_SSF57667
ZSCAN12	9753	genome.wustl.edu	37	6	28350334	28350334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000361028	-1	known	p.A583S	0.991	602	0%	650	11.5%	3	33.3%	benign(0.355)	deleterious(0)	deleterious(0.557)	NULL
ZSCAN12	9753	genome.wustl.edu	37	6	28360810	28360810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000361028	-1	known	p.T139I	0.000	437	0%	263	14.4%	1	0%	possibly_damaging(0.765)	tolerated(0.26)	neutral(0.318)	HMMSmart_SCAN
ZSCAN23	222696	genome.wustl.edu	37	6	28402287	28402287	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012455.1	-1	validated	p.N375	0.621	362	0%	168	22%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GPX5	2880	genome.wustl.edu	37	6	28501867	28501867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001509.2	+1	reviewed	p.R197C	1.000	198	0%	119	21%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thiordxn-like_fd
SCAND3	114821	genome.wustl.edu	37	6	28539825	28539825	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052923.1	-1	provisional	p.F1281V	0.876	262	0%	103	18.4%	5	20%	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMPfam_hATC
SCAND3	114821	genome.wustl.edu	37	6	28542517	28542517	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052923.1	-1	provisional	p.R655	1.000	291	0%	143	25.9%	1	0%	-	-	-	NULL
SCAND3	114821	genome.wustl.edu	37	6	28554335	28554335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052923.1	-1	provisional	p.R54C	0.956	290	0%	222	17.6%	0	-	possibly_damaging(0.676)	deleterious(0)	deleterious(0.685)	HMMPfam_SCAN,HMMSmart_SCAN
OR2B3	442184	genome.wustl.edu	37	6	29054409	29054409	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005226.2	-1	validated	p.I206S	0.001	85	0%	49	16.3%	0	-	benign(0.198)	deleterious(0)	neutral(0.464)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10C1	442194	genome.wustl.edu	37	6	29408527	29408527	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013941.2	+1	provisional	p.I245	0.000	46	0%	40	17.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
GABBR1	2550	genome.wustl.edu	37	6	29599305	29599305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001470.2	-1	reviewed	p.A53T	1.000	79	0%	86	24.4%	0	-	benign(0.004)	deleterious(0.02)	neutral(0.383)	HMMSmart_SM00032,superfamily_Complement control module/SCR domain
HLA-G	3135	genome.wustl.edu	37	6	29796591	29796591	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002127.5	+1	reviewed	p.R205	0.752	41	0%	45	20%	71	0%	-	-	-	superfamily_MHC antigen-recognition domain
PPP1R10	5514	genome.wustl.edu	37	6	30569411	30569411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002714.2	-1	reviewed	p.R913Q	1.000	112	0%	84	17.9%	107	28.9%	unknown(0)	deleterious(0)	-	HMMPfam_zf-CCCH,HMMSmart_SM00356
MDC1	9656	genome.wustl.edu	37	6	30671528	30671528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014641.2	-1	reviewed	p.R1811H	0.028	430	0%	348	25.9%	31	32.2%	benign(0.248)	tolerated(0.24)	neutral(0.062)	NULL
MDC1	9656	genome.wustl.edu	37	6	30672521	30672521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014641.2	-1	reviewed	p.R1480K	0.001	398	0%	302	23.2%	13	53.8%	possibly_damaging(0.543)	tolerated(0.55)	neutral(0.191)	NULL
MDC1	9656	genome.wustl.edu	37	6	30673549	30673549	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000417033	-1	known	p.H198Y	0.000	700	0%	504	23%	6	50%	-	-	-	NULL
DPCR1	135656	genome.wustl.edu	37	6	30917380	30917380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000462446	+1	known	p.P380H	0.008	972	0%	645	19.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
C6orf15	29113	genome.wustl.edu	37	6	31080019	31080019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014070.2	-1	validated	p.N39K	0.007	260	0%	226	19.5%	0	-	benign(0.039)	tolerated(0.09)	neutral(0.298)	NULL
CDSN	1041	genome.wustl.edu	37	6	31084106	31084106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001264.3	-1	reviewed	p.G429D	0.025	131	0%	88	27.3%	1	0%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
MICA	100507436	genome.wustl.edu	37	6	31380115	31380115	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000376219	+1	known	p.V302	0.001	672	0%	465	18.5%	36	33.3%	-	-	-	NULL
DDX39B	7919	genome.wustl.edu	37	6	31506768	31506768	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000449074	-1	known	p.A136	0.000	58	0%	55	21.8%	0	-	-	-	-	NULL
ABHD16A	7920	genome.wustl.edu	37	6	31656801	31656801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021160.2	-1	reviewed	p.D393Y	0.974	101	0%	72	13.9%	179	24.5%	possibly_damaging(0.44)	deleterious(0.04)	deleterious(0.492)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
LY6G6C	80740	genome.wustl.edu	37	6	31686978	31686978	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025261.1	-1	validated	p.C91*	1.000	239	0%	224	22.3%	0	-	-	-	-	superfamily_Snake toxin-like
CLIC1	1192	genome.wustl.edu	37	6	31701980	31701980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001288.4	-1	reviewed	p.L34M	0.996	193	0%	201	18.9%	1197	40.6%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_Thioredoxin-like
MSH5	4439	genome.wustl.edu	37	6	31711744	31711744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025259.5	+1	reviewed	p.T160I	0.969	17	0%	27	22.2%	7	42.8%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
SAPCD1	401251	genome.wustl.edu	37	6	31731922	31731922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039651.1	+1	provisional	p.L113M	0.989	579	0%	435	20.7%	7	57.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SKIV2L	6499	genome.wustl.edu	37	6	31937115	31937115	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000491994	+1	known	p.W151*	1.000	747	0%	640	19.2%	73	43.8%	benign(0.37)	tolerated(0.23)	neutral(0.159)	HMMPfam_DSHCT
CYP21A2	1589	genome.wustl.edu	37	6	32007234	32007234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000500.5	+1	reviewed	p.K183N	0.000	242	0%	283	25.1%	0	-	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	HMMPfam_p450,superfamily_Cytochrome_P450
TNXB	7148	genome.wustl.edu	37	6	32017162	32017162	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019105.6	-1	reviewed	p.G3212	0.011	35	0%	28	14.3%	2	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNXB	7148	genome.wustl.edu	37	6	32036395	32036395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019105.6	-1	reviewed	p.A1998T	0.026	54	0%	66	18.2%	0	-	probably_damaging(0.959)	tolerated(0.31)	neutral(0.430)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ATF6B	1388	genome.wustl.edu	37	6	32084551	32084551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004381.4	-1	reviewed	p.R576H	0.908	212	0%	148	25.7%	96	33.3%	benign(0.265)	tolerated(0.17)	neutral(0.086)	NULL
FKBPL	63943	genome.wustl.edu	37	6	32097332	32097332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022110.3	-1	reviewed	p.D76Y	0.803	269	0%	321	25.5%	10	40%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	NULL
HLA-DQB1	3119	genome.wustl.edu	37	6	32629970	32629970	+	Silent	SNP	G	G	A	rs9274013		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002123.3	-1	reviewed	p.N145	0.989	23	0%	32	28.1%	119	0%	-	-	-	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
HLA-DQB2	3120	genome.wustl.edu	37	6	32726853	32726853	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000427449	-1	known	p.T139I	1.000	33	0%	42	14.3%	171	0%	-	-	-	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
TAP1	6890	genome.wustl.edu	37	6	32816429	32816429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000593.5	-1	reviewed	p.Q582H	1.000	433	0%	484	24.6%	364	12.3%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_SSF52540
LOC100287516	100287516	genome.wustl.edu	37	6	32940841	32940841	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342622.1	-1	model	p.P36	0.014	17	0%	12	33.3%	0	-	-	-	-	NULL
COL11A2	1302	genome.wustl.edu	37	6	33133584	33133584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080680.2	-1	reviewed	p.G1498S	0.983	25	0%	33	21.2%	0	-	unknown(0)	tolerated(0.07)	-	NULL
COL11A2	1302	genome.wustl.edu	37	6	33141688	33141688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080680.2	-1	reviewed	p.R849W	1.000	122	0%	111	25.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Collagen
LOC100289525	100289525	genome.wustl.edu	37	6	33179485	33179485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342641.1	-1	model	p.G146C	0.000	55	0%	70	22.9%	1	0%	-	-	-	NULL
VPS52	6293	genome.wustl.edu	37	6	33234970	33234970	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022553.4	-1	reviewed	p.Q374*	1.000	208	0%	158	29.7%	30	10%	-	-	-	HMMPfam_Vps52
PHF1	5252	genome.wustl.edu	37	6	33382520	33382520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000439397	+1	known	p.R69K	1.000	336	0%	362	20.7%	49	36.7%	-	-	-	NULL
SYNGAP1	8831	genome.wustl.edu	37	6	33403390	33403390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006772.2	+1	reviewed	p.K254N	1.000	204	0.5%	192	24.5%	0	-	possibly_damaging(0.744)	deleterious(0.01)	deleterious(0.679)	superfamily_PH domain-like
SYNGAP1	8831	genome.wustl.edu	37	6	33411044	33411044	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006772.2	+1	reviewed	p.R905	0.771	18	0%	15	46.7%	3	33.3%	-	-	-	NULL
ITPR3	3710	genome.wustl.edu	37	6	33630715	33630715	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002224.2	+1	validated	p.G296*	1.000	144	0%	165	24.8%	9	0%	-	-	-	HMMPfam_MIR,superfamily_MIR,HMMSmart_MIR
MNF1	84300	genome.wustl.edu	37	6	33669152	33669152	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032340.2	-1	predicted	p.R62*	0.987	350	0%	233	11.6%	206	3.8%	-	-	-	NULL
IP6K3	117283	genome.wustl.edu	37	6	33694557	33694557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142883.1	-1	reviewed	p.Q180H	1.000	72	0%	57	31.6%	0	-	benign(0.422)	deleterious(0.01)	deleterious(0.542)	HMMPfam_IPK,superfamily_SAICAR synthase-like
PACSIN1	29993	genome.wustl.edu	37	6	34499533	34499533	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020804.2	+1	validated	p.G398	1.000	41	0%	39	28.2%	0	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
PACSIN1	29993	genome.wustl.edu	37	6	34499563	34499563	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020804.2	+1	validated	p.A408	0.988	37	0%	43	20.9%	1	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
SPDEF	25803	genome.wustl.edu	37	6	34511828	34511828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012391.1	-1	provisional	p.E135D	1.000	40	0%	34	26.5%	95	47.3%	benign(0.014)	tolerated(0.54)	neutral(0.008)	HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SAM_homology
SPDEF	25803	genome.wustl.edu	37	6	34511872	34511872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012391.1	-1	provisional	p.Q121K	1.000	44	0%	35	14.3%	97	13.4%	possibly_damaging(0.804)	tolerated(0.13)	deleterious(0.555)	superfamily_SAM_homology
SNRPC	6631	genome.wustl.edu	37	6	34730433	34730433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003093.2	+1	reviewed	p.Y38C	1.000	310	0%	130	22.3%	256	41%	possibly_damaging(0.876)	deleterious(0)	deleterious(0.786)	HMMPfam_zf-U1,superfamily_C2H2 and C2HC zinc fingers
TCP11	6954	genome.wustl.edu	37	6	35096878	35096878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000469514	-1	known	p.T82I	0.999	440	0%	194	27.3%	0	-	unknown(0)	-	-	NULL
ZNF76	7629	genome.wustl.edu	37	6	35258084	35258084	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003427.3	+1	provisional	p.Q158	0.999	145	0%	121	18.2%	32	37.5%	-	-	-	NULL
DEF6	50619	genome.wustl.edu	37	6	35287456	35287456	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022047.3	+1	validated	p.I457	0.091	88	0%	93	23.7%	43	27.9%	-	-	-	NULL
PPARD	5467	genome.wustl.edu	37	6	35392250	35392250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006238.4	+1	reviewed	p.R258W	1.000	98	0%	63	22.2%	30	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
FANCE	2178	genome.wustl.edu	37	6	35423612	35423612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021922.2	+1	reviewed	p.G113W	0.000	78	0%	92	18.5%	7	28.5%	probably_damaging(0.973)	tolerated(0.19)	neutral(0.464)	NULL
TEAD3	7005	genome.wustl.edu	37	6	35443791	35443791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000402886	-1	known	p.R209C	1.000	196	0%	228	23.2%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TEA
TULP1	7287	genome.wustl.edu	37	6	35477440	35477440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003322.3	-1	reviewed	p.S230N	0.010	353	0%	373	22.3%	0	-	benign(0.038)	tolerated(0.44)	neutral(0.015)	NULL
ARMC12	221481	genome.wustl.edu	37	6	35705914	35705914	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145028.3	+1	predicted	p.S119R	1.000	69	0%	65	21.5%	0	-	benign(0.244)	tolerated(0.17)	neutral(0.083)	HMMPfam_DUF634,superfamily_ARM-type_fold
SLC26A8	116369	genome.wustl.edu	37	6	35919008	35919008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052961.2	-1	reviewed	p.G802C	0.013	277	0%	107	12.1%	0	-	possibly_damaging(0.793)	tolerated(0.06)	deleterious(0.621)	NULL
MAPK13	5603	genome.wustl.edu	37	6	36099070	36099070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002754.3	+1	reviewed	p.G48R	1.000	20	0%	60	15%	22	4.5%	possibly_damaging(0.939)	tolerated(0.17)	neutral(0.444)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
MAPK13	5603	genome.wustl.edu	37	6	36104432	36104432	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002754.3	+1	reviewed	e7-1	1.000	54	0%	65	13.8%	0	-	-	-	-	-
BRPF3	27154	genome.wustl.edu	37	6	36169446	36169446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015695.2	+1	validated	p.K449N	0.935	287	0%	231	20.8%	5	20%	benign(0.344)	tolerated(0.1)	neutral(0.395)	NULL
CPNE5	57699	genome.wustl.edu	37	6	36710090	36710090	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020939.1	-1	reviewed	p.S579	0.987	66	0%	45	17.8%	3	33.3%	-	-	-	NULL
CPNE5	57699	genome.wustl.edu	37	6	36742749	36742749	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020939.1	-1	reviewed	p.G242	0.198	473	0%	261	21.5%	0	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
MTCH1	23787	genome.wustl.edu	37	6	36940463	36940463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000373627	-1	known	p.G291W	0.998	153	0%	119	24.4%	122	41.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitochondrial carrier
FGD2	221472	genome.wustl.edu	37	6	36981843	36981843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173558.3	+1	validated	p.P264S	1.000	71	0%	52	19.2%	7	0%	possibly_damaging(0.521)	tolerated(0.11)	neutral(0.447)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
FGD2	221472	genome.wustl.edu	37	6	36990015	36990015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173558.3	+1	validated	p.L443M	0.748	35	0%	27	25.9%	5	0%	benign(0.198)	tolerated(0.19)	neutral(0.069)	superfamily_PH domain-like
TMEM217	221468	genome.wustl.edu	37	6	37186560	37186560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145316.3	-1	validated	p.L83M	0.011	531	0.2%	301	23.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
BTBD9	114781	genome.wustl.edu	37	6	38142950	38142950	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099272.1	-1	reviewed	p.H550	1.000	110	0%	83	21.7%	5	40%	-	-	-	superfamily_Gal_bind_like
DNAH8	1769	genome.wustl.edu	37	6	38709553	38709553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001371.2	+1	validated	p.H178Y	1.000	301	0%	125	23.2%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_DHC_N1
DNAH8	1769	genome.wustl.edu	37	6	38723785	38723785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001371.2	+1	validated	p.A265V	1.000	391	0%	148	18.2%	0	-	benign(0.043)	tolerated(0.14)	neutral(0.252)	HMMPfam_DHC_N1
DNAH8	1769	genome.wustl.edu	37	6	38747763	38747763	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001371.2	+1	validated	p.P470	0.997	419	0%	117	13.7%	0	-	-	-	-	HMMPfam_DHC_N1
DNAH8	1769	genome.wustl.edu	37	6	38749030	38749030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001371.2	+1	validated	p.L497I	1.000	199	0%	89	15.7%	0	-	benign(0.001)	tolerated(0.41)	neutral(0.015)	HMMPfam_DHC_N1
DNAH8	1769	genome.wustl.edu	37	6	38794033	38794033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001371.2	+1	validated	p.A1100S	0.938	269	0%	41	17.1%	0	-	benign(0)	tolerated(0.72)	neutral(0.002)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38867640	38867640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001371.2	+1	validated	p.S2834Y	1.000	571	0%	237	20.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH8	1769	genome.wustl.edu	37	6	38919215	38919215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001371.2	+1	validated	p.R3907W	0.486	194	0%	142	17.6%	0	-	possibly_damaging(0.79)	tolerated(0.18)	neutral(0.352)	HMMPfam_Dynein_heavy
SAYSD1	55776	genome.wustl.edu	37	6	39073309	39073309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018322.1	-1	predicted	p.A151T	1.000	196	0%	127	20.5%	46	45.6%	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	HMMPfam_SAYSvFN
SAYSD1	55776	genome.wustl.edu	37	6	39082738	39082738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018322.1	-1	predicted	p.A43V	0.535	31	0%	48	12.5%	14	21.4%	benign(0.316)	tolerated(0.36)	neutral(0.119)	NULL
KCNK5	8645	genome.wustl.edu	37	6	39196873	39196873	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003740.3	-1	reviewed	p.G5	0.966	56	0%	67	31.3%	6	16.6%	-	-	-	superfamily_SSF81324
KCNK16	83795	genome.wustl.edu	37	6	39284619	39284619	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135105.1	-1	reviewed	p.S200	0.003	111	0%	127	29.1%	0	-	-	-	-	HMMPfam_Ion_trans_2,superfamily_SSF81324
MOCS1	4337	genome.wustl.edu	37	6	39895156	39895156	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001075098.3	-1	reviewed	p.A54	0.000	91	0%	67	28.4%	3	66.6%	-	-	-	NULL
LRFN2	57497	genome.wustl.edu	37	6	40399926	40399926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020737.1	-1	provisional	p.K309N	0.997	24	0%	17	29.4%	0	-	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TSPO2	222642	genome.wustl.edu	37	6	41011405	41011405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010873.2	+1	validated	p.V95I	0.004	197	0%	127	11.8%	0	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_TspO_MBR
NFYA	4800	genome.wustl.edu	37	6	41065138	41065138	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002505.4	+1	reviewed	p.R345	1.000	444	0%	340	18.2%	21	14.2%	-	-	-	NULL
TREML1	340205	genome.wustl.edu	37	6	41117500	41117500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178174.2	-1	provisional	p.P260S	0.000	715	0%	339	20.6%	0	-	possibly_damaging(0.602)	tolerated(0.16)	neutral(0.268)	NULL
PGC	5225	genome.wustl.edu	37	6	41704638	41704638	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002630.3	-1	reviewed	p.S373	0.856	93	0%	116	29.3%	0	-	-	-	-	HMMPfam_Asp,superfamily_Pept_Aspartic
PGC	5225	genome.wustl.edu	37	6	41712253	41712253	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002630.3	-1	reviewed	e3-1	0.990	97	0%	112	27.7%	0	-	-	-	-	-
FRS3	10817	genome.wustl.edu	37	6	41743268	41743268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006653.3	-1	reviewed	p.H48Y	1.000	127	0%	128	23.4%	2	0%	benign(0.048)	tolerated(0.73)	neutral(0.005)	HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729
PRICKLE4	29964	genome.wustl.edu	37	6	41753218	41753218	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013397.5	+1	validated	p.Q174	0.710	57	0%	66	15.2%	2	0%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
USP49	25862	genome.wustl.edu	37	6	41773723	41773723	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018561.3	-1	provisional	p.N333	0.927	48	0%	46	19.6%	0	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
BYSL	705	genome.wustl.edu	37	6	41900163	41900163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004053.3	+1	reviewed	p.L345M	1.000	106	0%	99	18.2%	76	38.1%	probably_damaging(0.971)	tolerated(0.05)	deleterious(0.758)	HMMPfam_Bystin
C6orf132	647024	genome.wustl.edu	37	6	42074177	42074177	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000341865	-1	known	p.R491	0.252	43	0%	33	18.2%	8	0%	-	-	-	NULL
UBR2	23304	genome.wustl.edu	37	6	42604815	42604815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015255.2	+1	reviewed	p.T581A	1.000	371	0%	163	32.5%	11	45.4%	benign(0.01)	tolerated(0.81)	neutral(0.001)	NULL
KIAA0240	23506	genome.wustl.edu	37	6	42797602	42797602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015349.1	+1	validated	p.L511M	1.000	113	0%	51	23.5%	6	50%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
KIAA0240	23506	genome.wustl.edu	37	6	42832872	42832872	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015349.1	+1	validated	p.S976R	0.916	148	0%	50	16%	4	25%	benign(0.012)	deleterious(0.03)	neutral(0.365)	NULL
GNMT	27232	genome.wustl.edu	37	6	42931364	42931364	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018960.4	+1	reviewed	p.L270	1.000	179	0%	155	23.2%	1	100%	-	-	-	superfamily_SSF53335
PPP2R5D	5528	genome.wustl.edu	37	6	42974218	42974218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000230402	+1	known	p.S47N	0.999	78	0%	68	22.1%	15	13.3%	unknown(0)	deleterious(0)	-	NULL
PPP2R5D	5528	genome.wustl.edu	37	6	42977106	42977106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006245.2	+1	reviewed	p.S433I	1.000	122	0%	132	28.8%	76	35.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_B56
CUL7	9820	genome.wustl.edu	37	6	43017156	43017156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014780.4	-1	reviewed	p.A605V	0.001	237	0%	208	18.3%	18	55.5%	probably_damaging(0.98)	tolerated(0.07)	deleterious(0.743)	NULL
CUL7	9820	genome.wustl.edu	37	6	43018860	43018860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014780.4	-1	reviewed	p.R360H	0.944	165	0%	116	19%	21	47.6%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
CUL7	9820	genome.wustl.edu	37	6	43019484	43019484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014780.4	-1	reviewed	p.L200I	1.000	234	0%	260	21.9%	8	50%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
KLC4	89953	genome.wustl.edu	37	6	43030683	43030683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201523.1	+1	validated	p.S114I	1.000	57	0%	36	13.9%	19	21%	benign(0.134)	deleterious(0.04)	neutral(0.360)	HMMPfam_Rab5-bind,superfamily_TPR-like
PTK7	5754	genome.wustl.edu	37	6	43099886	43099886	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002821.3	+1	reviewed	p.A315	0.998	99	0%	63	17.5%	41	48.7%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
PTK7	5754	genome.wustl.edu	37	6	43111240	43111240	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002821.3	+1	reviewed	p.A711	0.016	115	0.9%	77	33.8%	61	42.6%	-	-	-	NULL
PTK7	5754	genome.wustl.edu	37	6	43112301	43112301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002821.3	+1	reviewed	p.K788N	1.000	146	0%	152	21.7%	109	36.6%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	superfamily_Protein kinase-like (PK-like)
CUL9	23113	genome.wustl.edu	37	6	43152226	43152226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015089.2	+1	validated	p.A60S	0.973	385	0%	275	22.5%	3	0%	unknown(0)	tolerated(0.29)	-	NULL
CUL9	23113	genome.wustl.edu	37	6	43154799	43154799	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015089.2	+1	validated	p.V451	0.100	189	0%	150	26.7%	2	50%	-	-	-	NULL
CUL9	23113	genome.wustl.edu	37	6	43172163	43172163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015089.2	+1	validated	p.R1409W	0.008	290	0.7%	198	20.2%	7	42.8%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
CUL9	23113	genome.wustl.edu	37	6	43182859	43182859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015089.2	+1	validated	p.L1911M	0.999	98	0%	107	20.6%	12	58.3%	possibly_damaging(0.945)	tolerated(0.24)	neutral(0.427)	"superfamily_""Winged helix"" DNA-binding domain"
CUL9	23113	genome.wustl.edu	37	6	43188497	43188497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015089.2	+1	validated	p.L2146I	0.998	59	0%	58	12.1%	15	13.3%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_IBR,HMMSmart_SM00647
CUL9	23113	genome.wustl.edu	37	6	43192067	43192067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015089.2	+1	validated	p.E2480K	0.415	183	0%	202	25.2%	42	30.9%	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	NULL
CUL9	23113	genome.wustl.edu	37	6	43192134	43192134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015089.2	+1	validated	p.T2502I	0.862	345	0%	333	21%	33	21.2%	benign(0.232)	deleterious(0)	neutral(0.468)	NULL
C6orf108	10591	genome.wustl.edu	37	6	43194109	43194109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006443.2	-1	reviewed	p.R74M	0.006	40	0%	68	17.6%	201	45.2%	probably_damaging(0.961)	deleterious(0.05)	deleterious(0.750)	HMMPfam_Nuc_deoxyrib_tr,superfamily_SSF52309
TTBK1	84630	genome.wustl.edu	37	6	43230557	43230557	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032538.1	+1	validated	p.S485	0.369	12	0%	20	30%	3	0%	-	-	-	NULL
ZNF318	24149	genome.wustl.edu	37	6	43310435	43310435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014345.2	-1	validated	p.M1085I	1.000	591	0.2%	181	21%	0	-	possibly_damaging(0.786)	deleterious(0.05)	deleterious(0.640)	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers
DLK2	65989	genome.wustl.edu	37	6	43418359	43418359	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023932.2	-1	validated	p.E357A	1.000	30	0%	18	44.4%	3	33.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
DLK2	65989	genome.wustl.edu	37	6	43419737	43419737	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023932.2	-1	validated	p.C119	0.943	149	0%	181	23.2%	0	-	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
POLR1C	9533	genome.wustl.edu	37	6	43497009	43497009	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004875.2	+1	validated	p.A315	0.000	317	0%	255	22%	4	50%	-	-	-	HMMSmart_RPOLD
XPO5	57510	genome.wustl.edu	37	6	43540292	43540292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020750.2	-1	validated	p.R84Q	0.993	586	0%	454	22.5%	14	50%	possibly_damaging(0.545)	tolerated(0.95)	neutral(0.185)	superfamily_ARM repeat
MAD2L1BP	9587	genome.wustl.edu	37	6	43607888	43607888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003690.1	+1	reviewed	p.P180L	1.000	66	0%	62	19.4%	51	35.2%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_DUF1135
RSPH9	221421	genome.wustl.edu	37	6	43638602	43638602	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152732.3	+1	provisional	p.F249	1.000	96	0%	74	16.2%	0	-	-	-	-	NULL
TMEM63B	55362	genome.wustl.edu	37	6	44115180	44115180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018426.1	+1	validated	p.M310I	1.000	194	0%	220	23.6%	39	43.5%	benign(0.119)	tolerated(0.17)	neutral(0.068)	NULL
TMEM63B	55362	genome.wustl.edu	37	6	44121509	44121509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018426.1	+1	validated	p.A680D	1.000	52	0%	75	25.3%	34	41.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF221
TMEM63B	55362	genome.wustl.edu	37	6	44122456	44122456	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018426.1	+1	validated	p.S779T	1.000	50	0%	58	22.4%	57	28%	benign(0.026)	tolerated(0.19)	neutral(0.051)	NULL
CAPN11	11131	genome.wustl.edu	37	6	44141019	44141019	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007058.3	+1	reviewed	p.G243*	1.000	104	0%	59	22%	0	-	-	-	-	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
HSP90AB1	3326	genome.wustl.edu	37	6	44217568	44217568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007355.2	+1	provisional	p.H171Y	0.999	602	0%	525	24.4%	387	0.7%	benign(0.003)	deleterious(0.03)	neutral(0.364)	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
HSP90AB1	3326	genome.wustl.edu	37	6	44217841	44217841	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007355.2	+1	provisional	p.E200*	1.000	231	0%	249	20.5%	379	0.7%	-	-	-	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HSP90
HSP90AB1	3326	genome.wustl.edu	37	6	44221034	44221034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007355.2	+1	provisional	p.A662T	1.000	367	0%	370	21.6%	1698	1.1%	possibly_damaging(0.706)	deleterious(0)	deleterious(0.699)	HMMPfam_HSP90,superfamily_HSP90 C-terminal domain (C-terminal part of Pfam 00183)
NFKBIE	4794	genome.wustl.edu	37	6	44229417	44229417	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004556.2	-1	validated	p.E352*	0.991	61	0%	75	13.3%	60	5%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
NFKBIE	4794	genome.wustl.edu	37	6	44230330	44230330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004556.2	-1	validated	p.Q284H	1.000	141	0%	197	19.3%	53	49%	probably_damaging(0.981)	tolerated(0.32)	neutral(0.450)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
TCTE1	202500	genome.wustl.edu	37	6	44253840	44253840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182539.3	-1	validated	p.G236D	0.879	112	0%	144	17.4%	0	-	probably_damaging(0.998)	tolerated(0.33)	deleterious(0.498)	superfamily_SSF52047
TCTE1	202500	genome.wustl.edu	37	6	44255254	44255254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000412569	-1	known	p.E103D	0.001	57	0%	74	27%	0	-	-	-	-	NULL
SPATS1	221409	genome.wustl.edu	37	6	44344771	44344771	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145026.3	+1	validated	e8-1	0.998	247	0%	180	13.3%	0	-	-	-	-	-
CDC5L	988	genome.wustl.edu	37	6	44393888	44393888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001253.2	+1	reviewed	p.A540S	1.000	326	0%	88	27.3%	33	39.3%	benign(0.006)	tolerated(0.11)	neutral(0.272)	NULL
SUPT3H	8464	genome.wustl.edu	37	6	45332944	45332944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003599.2	-1	provisional	p.S32N	1.000	238	0%	152	20.4%	7	42.8%	possibly_damaging(0.925)	tolerated(0.24)	neutral(0.411)	HMMPfam_TFIID-18kDa,superfamily_Histone-fold
CLIC5	53405	genome.wustl.edu	37	6	45870921	45870921	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114086.1	-1	validated	p.N379	0.889	164	0%	70	21.4%	7	71.4%	-	-	-	superfamily_Glutathione S-transferase (GST) C-terminal domain
SLC25A27	9481	genome.wustl.edu	37	6	46636496	46636496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004277.3	+1	reviewed	p.L224F	0.932	535	0%	388	23.5%	0	-	benign(0.141)	tolerated(0.17)	neutral(0.071)	superfamily_Mitochondrial carrier
TDRD6	221400	genome.wustl.edu	37	6	46659432	46659432	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010870.2	+1	validated	p.L1189	0.000	48	0%	83	22.9%	0	-	-	-	-	NULL
TDRD6	221400	genome.wustl.edu	37	6	46661339	46661339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010870.2	+1	validated	p.E1825G	0.014	70	0%	100	23%	0	-	possibly_damaging(0.868)	deleterious(0.01)	deleterious(0.743)	NULL
MEP1A	4224	genome.wustl.edu	37	6	46793209	46793209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005588.2	+1	validated	p.L253M	1.000	307	0%	113	23%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Astacin,superfamily_SSF55486
MEP1A	4224	genome.wustl.edu	37	6	46803219	46803219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005588.2	+1	validated	p.P673S	1.000	101	0%	32	12.5%	1	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_EGF,superfamily_SSF57196
GPR110	266977	genome.wustl.edu	37	6	46977303	46977303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153840.2	-1	validated	p.R623H	1.000	288	0%	74	13.5%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2
GPR110	266977	genome.wustl.edu	37	6	46988498	46988498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153840.2	-1	validated	p.G194C	0.993	358	0%	105	19%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_SEA,superfamily_SEA domain
GPR115	221393	genome.wustl.edu	37	6	47682010	47682010	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153838.3	+1	validated	p.R343	0.001	203	0%	45	42.2%	0	-	-	-	-	NULL
GPR115	221393	genome.wustl.edu	37	6	47682469	47682469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153838.3	+1	validated	p.L496F	1.000	351	0%	106	26.4%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_7tm_2
PTCHD4	442213	genome.wustl.edu	37	6	47847364	47847364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013732.3	-1	validated	p.C389R	1.000	284	0%	106	32.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Patched
MUT	4594	genome.wustl.edu	37	6	49421379	49421379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000255.3	-1	reviewed	p.E334D	1.000	219	0%	137	23.4%	10	10%	benign(0.003)	tolerated(0.37)	neutral(0.019)	HMMPfam_MM_CoA_mutase,superfamily_Cobalamin (vitamin B12)-dependent enzymes
GLYATL3	389396	genome.wustl.edu	37	6	49485269	49485269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010904.1	+1	validated	p.G105W	1.000	407	0%	176	19.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)
CRISP3	10321	genome.wustl.edu	37	6	49700925	49700925	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006061.1	-1	provisional	p.V168	0.981	375	0%	202	21.8%	0	-	-	-	-	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular,PatternScan_CRISP_2
CRISP3	10321	genome.wustl.edu	37	6	49703255	49703255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006061.1	-1	provisional	p.C80Y	0.091	244	0%	124	19.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular
TFAP2D	83741	genome.wustl.edu	37	6	50686807	50686807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172238.3	+1	validated	p.S181Y	1.000	477	0%	587	24%	0	-	possibly_damaging(0.681)	tolerated(0.08)	deleterious(0.543)	NULL
TFAP2D	83741	genome.wustl.edu	37	6	50696613	50696613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172238.3	+1	validated	p.P215T	1.000	218	0%	169	12.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TF_AP-2
TFAP2B	7021	genome.wustl.edu	37	6	50807997	50807997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003221.3	+1	reviewed	p.L357M	1.000	168	0%	213	25.8%	0	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMPfam_TF_AP-2
TFAP2B	7021	genome.wustl.edu	37	6	50810933	50810933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003221.3	+1	reviewed	p.G404D	1.000	43	0%	53	28.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TF_AP-2
PKHD1	5314	genome.wustl.edu	37	6	51656168	51656168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138694.3	-1	reviewed	p.R2769I	0.997	243	0%	56	23.2%	0	-	probably_damaging(0.976)	tolerated(0.16)	deleterious(0.477)	HMMPfam_G8
PKHD1	5314	genome.wustl.edu	37	6	51720701	51720701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138694.3	-1	reviewed	p.R2634K	0.015	261	0%	160	20%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51889775	51889775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138694.3	-1	reviewed	p.Q1611H	0.948	221	0%	115	19.1%	1	0%	benign(0.007)	tolerated(0.07)	neutral(0.319)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
PKHD1	5314	genome.wustl.edu	37	6	51913319	51913319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138694.3	-1	reviewed	p.R793H	0.111	195	0.5%	46	17.4%	0	-	benign(0.006)	tolerated(0.53)	neutral(0.007)	NULL
EFHC1	114327	genome.wustl.edu	37	6	52288771	52288771	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018100.3	+1	reviewed	p.L31	0.177	71	0%	58	17.2%	6	33.3%	-	-	-	NULL
FBXO9	26268	genome.wustl.edu	37	6	52938287	52938287	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012347.4	+1	reviewed	p.L43	0.999	258	0%	208	28.8%	21	42.8%	-	-	-	NULL
FBXO9	26268	genome.wustl.edu	37	6	52960341	52960341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012347.4	+1	reviewed	p.R372C	1.000	311	0%	125	26.4%	70	37.1%	benign(0.094)	deleterious(0.01)	neutral(0.413)	superfamily_F-box domain
GCM1	8521	genome.wustl.edu	37	6	52999013	52999013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003643.3	-1	reviewed	p.R62H	1.000	240	0.4%	137	26.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_GCM,superfamily_GCM_motif
GCLC	2729	genome.wustl.edu	37	6	53365106	53365106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001498.2	-1	reviewed	p.S507N	0.999	246	0%	57	22.8%	23	39.1%	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_GCS,superfamily_Glutamine synthetase/guanido kinase
GCLC	2729	genome.wustl.edu	37	6	53372324	53372324	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001498.2	-1	reviewed	p.I346	0.998	466	0%	213	23.9%	8	37.5%	-	-	-	HMMPfam_GCS,superfamily_Glutamine synthetase/guanido kinase
GCLC	2729	genome.wustl.edu	37	6	53385601	53385601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001498.2	-1	reviewed	p.L141F	0.997	316	0%	132	24.2%	8	50%	possibly_damaging(0.455)	tolerated(0.06)	deleterious(0.472)	superfamily_Glutamine synthetase/guanido kinase
TINAG	27283	genome.wustl.edu	37	6	54191620	54191620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014464.3	+1	validated	p.S177I	1.000	410	0.2%	143	14.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Cysteine proteinases
BMP5	653	genome.wustl.edu	37	6	55638953	55638953	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021073.2	-1	reviewed	p.A307	0.898	558	0%	135	20.7%	0	-	-	-	-	NULL
COL21A1	81578	genome.wustl.edu	37	6	56031716	56031716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030820.3	-1	reviewed	p.E422D	1.000	491	0%	276	23.2%	1	0%	possibly_damaging(0.919)	tolerated(0.55)	neutral(0.377)	NULL
DST	667	genome.wustl.edu	37	6	56327949	56327949	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015548.4	-1	reviewed	p.L5008	1.000	438	0.2%	281	21.7%	15	6.6%	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56347612	56347612	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015548.4	-1	reviewed	p.E4468*	1.000	128	0%	109	27.5%	6	0%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56417083	56417083	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015548.4	-1	reviewed	p.E2880*	0.366	243	0%	124	21.8%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150
DST	667	genome.wustl.edu	37	6	56417094	56417094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015548.4	-1	reviewed	p.S2876I	0.001	244	0%	131	19.1%	0	-	possibly_damaging(0.684)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150
DST	667	genome.wustl.edu	37	6	56417415	56417415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015548.4	-1	reviewed	p.R2769Q	1.000	224	0%	110	23.6%	0	-	probably_damaging(1)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56417736	56417736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015548.4	-1	reviewed	p.S2662Y	0.980	249	0%	133	16.5%	0	-	benign(0.035)	-	-	NULL
DST	667	genome.wustl.edu	37	6	56417821	56417821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015548.4	-1	reviewed	p.V2634I	0.056	257	0%	145	22.8%	0	-	benign(0.097)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56426959	56426959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015548.4	-1	reviewed	p.T2059N	0.996	422	0%	244	20.1%	1	0%	benign(0.081)	-	-	NULL
DST	667	genome.wustl.edu	37	6	56470519	56470519	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000370769	-1	known	p.L2758	0.029	200	0%	47	19.1%	0	-	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56481435	56481435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001723.5	-1	reviewed	p.A2277D	1.000	120	0%	35	22.9%	0	-	probably_damaging(0.979)	tolerated(0.18)	deleterious(0.478)	HMMPfam_Plectin,HMMSmart_PLEC,superfamily_SSF75399
DST	667	genome.wustl.edu	37	6	56500438	56500438	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015548.4	-1	reviewed	p.C508	1.000	455	0%	350	14.3%	0	-	-	-	-	superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56507422	56507422	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015548.4	-1	reviewed	p.H55	0.997	223	0%	104	23.1%	0	-	-	-	-	NULL
KIAA1586	57691	genome.wustl.edu	37	6	56918003	56918003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020931.2	+1	validated	p.H236Y	0.000	69	0%	56	23.2%	3	33.3%	possibly_damaging(0.698)	deleterious(0.04)	deleterious(0.600)	NULL
ZNF451	26036	genome.wustl.edu	37	6	57012381	57012381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031623.2	+1	validated	p.C500R	1.000	168	0%	72	25%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF451	26036	genome.wustl.edu	37	6	57012903	57012903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031623.2	+1	validated	p.L674I	1.000	109	0%	43	32.6%	2	50%	probably_damaging(0.993)	tolerated(0.08)	deleterious(0.750)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF451	26036	genome.wustl.edu	37	6	57013193	57013193	+	Silent	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031623.2	+1	validated	p.T770	0.220	297	0%	90	15.6%	5	40%	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF451	26036	genome.wustl.edu	37	6	57015558	57015558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031623.2	+1	validated	p.T884A	1.000	360	0%	156	29.5%	6	33.3%	probably_damaging(0.97)	tolerated(0.06)	deleterious(0.735)	NULL
ZNF451	26036	genome.wustl.edu	37	6	57018781	57018781	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031623.2	+1	validated	p.N1002	1.000	185	0%	83	21.7%	3	33.3%	-	-	-	NULL
EYS	346007	genome.wustl.edu	37	6	64430947	64430947	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142800.1	-1	reviewed	p.L2994	0.998	265	0%	67	29.9%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
EYS	346007	genome.wustl.edu	37	6	64708980	64708980	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000398580	-1	known	p.P46L	0.000	407	0%	233	21%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
EYS	346007	genome.wustl.edu	37	6	64940539	64940539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142800.1	-1	reviewed	p.V2124M	0.000	145	0%	37	21.6%	0	-	probably_damaging(0.989)	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181
EYS	346007	genome.wustl.edu	37	6	65300236	65300236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142800.1	-1	reviewed	p.L1842I	0.011	231	0%	89	20.2%	0	-	possibly_damaging(0.615)	-	-	superfamily_Concanavalin A-like lectins/glucanases
EYS	346007	genome.wustl.edu	37	6	66063410	66063410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142800.1	-1	reviewed	p.G467D	0.009	310	0%	72	25%	0	-	benign(0.019)	deleterious(0.04)	neutral(0.350)	NULL
EYS	346007	genome.wustl.edu	37	6	66205257	66205257	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000471279	-1	known	e1-1	0.000	200	0%	84	19%	0	-	-	-	-	-
BAI3	577	genome.wustl.edu	37	6	70070805	70070805	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001704.2	+1	reviewed	p.G1214*	1.000	263	0%	83	18.1%	0	-	-	-	-	NULL
COL19A1	1310	genome.wustl.edu	37	6	70639407	70639407	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001858.4	+1	reviewed	p.R161*	1.000	332	0.3%	109	14.7%	0	-	-	-	-	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
COL19A1	1310	genome.wustl.edu	37	6	70856775	70856775	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001858.4	+1	reviewed	p.G629	0.045	194	0%	52	26.9%	0	-	-	-	-	HMMPfam_Collagen
COL9A1	1297	genome.wustl.edu	37	6	70935713	70935713	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001851.4	-1	reviewed	e37-1	1.000	106	0%	94	19.1%	0	-	-	-	-	-
COL9A1	1297	genome.wustl.edu	37	6	70963116	70963116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001851.4	-1	reviewed	p.P579H	1.000	291	0.3%	75	26.7%	13	61.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Collagen
COL9A1	1297	genome.wustl.edu	37	6	70964894	70964894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001851.4	-1	reviewed	p.A524T	0.205	232	0%	79	30.4%	2	50%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_Collagen
COL9A1	1297	genome.wustl.edu	37	6	70970387	70970387	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001851.4	-1	reviewed	p.T474	0.802	306	0.7%	145	24.8%	0	-	-	-	-	HMMPfam_Collagen
FAM135A	57579	genome.wustl.edu	37	6	71185383	71185383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105531.2	+1	validated	p.E105D	0.999	286	0%	68	26.5%	3	33.3%	benign(0.282)	tolerated(0.49)	neutral(0.097)	NULL
FAM135A	57579	genome.wustl.edu	37	6	71236124	71236124	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105531.2	+1	validated	p.N917H	0.000	337	0%	141	22%	8	75%	benign(0.186)	tolerated(0.29)	neutral(0.046)	NULL
SMAP1	60682	genome.wustl.edu	37	6	71546716	71546716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001044305.1	+1	reviewed	p.D217N	1.000	149	0%	71	18.3%	32	37.5%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
RIMS1	22999	genome.wustl.edu	37	6	72889319	72889319	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014989.4	+1	reviewed	p.I171	0.965	110	0%	118	16.9%	0	-	-	-	-	superfamily_FYVE/PHD zinc finger
RIMS1	22999	genome.wustl.edu	37	6	72889487	72889487	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014989.4	+1	reviewed	p.A227	0.989	73	0%	77	15.6%	0	-	-	-	-	NULL
RIMS1	22999	genome.wustl.edu	37	6	72892258	72892258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014989.4	+1	reviewed	p.A362T	1.000	35	0%	34	32.4%	0	-	possibly_damaging(0.753)	deleterious(0.01)	deleterious(0.682)	NULL
KCNQ5	56479	genome.wustl.edu	37	6	73904619	73904619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019842.3	+1	reviewed	p.P761T	0.998	544	0.2%	192	19.3%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
DDX43	55510	genome.wustl.edu	37	6	74116094	74116094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018665.2	+1	reviewed	p.A272V	0.995	314	0%	385	15.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
MTO1	25821	genome.wustl.edu	37	6	74192333	74192333	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001123226.1	+1	reviewed	p.L583	0.000	134	0%	136	29.4%	3	0%	-	-	-	NULL
CD109	135228	genome.wustl.edu	37	6	74473403	74473403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133493.3	+1	reviewed	p.A368T	0.998	410	0%	350	18%	0	-	benign(0.354)	tolerated(0.17)	neutral(0.171)	NULL
CD109	135228	genome.wustl.edu	37	6	74497087	74497087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133493.3	+1	reviewed	p.R823M	0.689	280	0%	168	16.7%	0	-	benign(0.026)	tolerated(0.06)	neutral(0.324)	NULL
COL12A1	1303	genome.wustl.edu	37	6	75811764	75811764	+	Missense_Mutation	SNP	C	C	T	rs186328815	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004370.5	-1	reviewed	p.R2807H	1.000	224	0.9%	151	20.5%	23	34.7%	unknown(0)	-	-	NULL
COL12A1	1303	genome.wustl.edu	37	6	75831069	75831069	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004370.5	-1	reviewed	p.F2345	1.000	146	0%	43	27.9%	9	66.6%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL12A1	1303	genome.wustl.edu	37	6	75834935	75834935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004370.5	-1	reviewed	p.H2172R	1.000	336	0%	82	20.7%	12	33.3%	benign(0.268)	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
COL12A1	1303	genome.wustl.edu	37	6	75839898	75839898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004370.5	-1	reviewed	p.S2040N	1.000	187	0%	54	24.1%	6	33.3%	probably_damaging(0.994)	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SENP6	26054	genome.wustl.edu	37	6	76312252	76312252	+	Silent	SNP	C	C	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015571.2	+1	validated	p.G4	1.000	99	0%	119	20.2%	4	25%	-	-	-	NULL
MYO6	4646	genome.wustl.edu	37	6	76558092	76558092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004999.3	+1	reviewed	p.D308Y	1.000	428	0%	195	27.7%	5	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO6	4646	genome.wustl.edu	37	6	76624712	76624712	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004999.3	+1	reviewed	p.Q1281*	1.000	80	0%	63	19%	39	41%	-	-	-	NULL
HTR1B	3351	genome.wustl.edu	37	6	78172383	78172383	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000863.1	-1	provisional	p.R246	0.104	87	0%	136	10.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PHIP	55023	genome.wustl.edu	37	6	79650691	79650691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017934.5	-1	validated	p.L1729I	1.000	579	0.3%	223	22%	3	0%	benign(0.051)	tolerated(0.36)	neutral(0.023)	NULL
PHIP	55023	genome.wustl.edu	37	6	79727063	79727063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017934.5	-1	validated	p.R379M	1.000	75	0%	32	12.5%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40
HMGN3	9324	genome.wustl.edu	37	6	79918265	79918265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004242.2	-1	reviewed	p.A32V	1.000	252	0%	104	19.2%	317	39.7%	possibly_damaging(0.86)	-	-	HMMPfam_HMG14_17,HMMSmart_SM00527,PatternScan_HMG14_17
TTK	7272	genome.wustl.edu	37	6	80718110	80718110	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003318.4	+1	reviewed	p.E124*	1.000	164	0%	239	24.3%	2	0%	-	-	-	NULL
IBTK	25998	genome.wustl.edu	37	6	82937014	82937014	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015525.2	-1	reviewed	p.V183	1.000	150	0%	106	18.9%	4	25%	-	-	-	superfamily_RCC1/BLIP-II
DOPEY1	23033	genome.wustl.edu	37	6	83819954	83819954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015018.2	+1	validated	p.T201M	1.000	240	0%	143	28%	0	-	benign(0.11)	tolerated(0.19)	neutral(0.058)	HMMPfam_Dopey_N
DOPEY1	23033	genome.wustl.edu	37	6	83845504	83845504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015018.2	+1	validated	p.R1013C	1.000	184	0%	63	19%	1	100%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83847218	83847218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015018.2	+1	validated	p.V1153L	0.961	287	0%	79	15.2%	1	0%	benign(0.263)	tolerated(0.06)	neutral(0.350)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83847774	83847774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015018.2	+1	validated	p.G1338E	1.000	190	0%	42	31%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83849819	83849819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015018.2	+1	validated	p.Q1741K	1.000	438	0%	165	25.5%	5	20%	probably_damaging(0.988)	tolerated(0.16)	deleterious(0.497)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83872582	83872582	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015018.2	+1	validated	p.R2346*	1.000	419	0%	155	18.7%	21	23.8%	-	-	-	NULL
SNAP91	9892	genome.wustl.edu	37	6	84371296	84371296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014841.2	-1	validated	p.R126H	1.000	216	0%	128	29.7%	0	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273
MRAP2	112609	genome.wustl.edu	37	6	84772645	84772645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138409.2	+1	validated	p.A54V	1.000	1058	0%	588	11.9%	5	80%	possibly_damaging(0.498)	deleterious(0.03)	deleterious(0.531)	NULL
MRAP2	112609	genome.wustl.edu	37	6	84799119	84799119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138409.2	+1	validated	p.E179D	0.986	205	0.5%	60	25%	5	0%	benign(0.016)	deleterious(0)	neutral(0.445)	NULL
KIAA1009	22832	genome.wustl.edu	37	6	84884976	84884976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014895.2	-1	validated	p.S585Y	0.083	296	0.3%	193	21.2%	2	50%	benign(0.123)	tolerated(0.1)	neutral(0.296)	NULL
KIAA1009	22832	genome.wustl.edu	37	6	84896292	84896292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014895.2	-1	validated	p.P387S	0.462	379	0%	416	24.5%	2	50%	possibly_damaging(0.741)	deleterious(0)	deleterious(0.716)	NULL
KIAA1009	22832	genome.wustl.edu	37	6	84904604	84904604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014895.2	-1	validated	p.S342F	1.000	518	0%	560	23.2%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TBX18	9096	genome.wustl.edu	37	6	85446681	85446681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080508.1	-1	provisional	p.G516S	1.000	222	0%	114	18.4%	4	75%	benign(0.013)	tolerated(0.86)	neutral(0.001)	NULL
TBX18	9096	genome.wustl.edu	37	6	85448256	85448256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080508.1	-1	provisional	p.R353Q	1.000	313	0%	106	20.8%	20	45%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TBX18	9096	genome.wustl.edu	37	6	85457662	85457662	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080508.1	-1	provisional	p.T305	0.975	282	0%	123	22%	11	18.1%	-	-	-	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
TBX18	9096	genome.wustl.edu	37	6	85457756	85457756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080508.1	-1	provisional	p.R274H	1.000	212	0%	89	28.1%	14	57.1%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
TBX18	9096	genome.wustl.edu	37	6	85466570	85466570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080508.1	-1	provisional	p.S206L	1.000	146	0%	118	20.3%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
SNX14	57231	genome.wustl.edu	37	6	86227518	86227518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153816.3	-1	reviewed	p.P742S	1.000	801	0%	390	23.3%	67	37.3%	probably_damaging(0.985)	tolerated(0.11)	deleterious(0.704)	NULL
SNX14	57231	genome.wustl.edu	37	6	86227751	86227751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153816.3	-1	reviewed	p.S708F	1.000	228	0%	166	25.9%	38	47.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87969691	87969691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015021.1	+1	validated	p.R2115Q	1.000	229	0.4%	84	21.4%	8	0%	benign(0.299)	tolerated(0.12)	neutral(0.353)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GJB7	375519	genome.wustl.edu	37	6	87994134	87994134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198568.2	-1	validated	p.V166A	1.000	241	0%	79	26.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC
C6orf163	206412	genome.wustl.edu	37	6	88058529	88058529	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000388923	+1	known	e2-1	1.000	209	0%	90	16.7%	0	-	-	-	-	-
ORC3	23595	genome.wustl.edu	37	6	88362959	88362959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181837.1	+1	reviewed	p.S503N	0.949	186	0%	88	12.5%	37	32.4%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
SPACA1	81833	genome.wustl.edu	37	6	88769170	88769170	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030960.2	+1	reviewed	e5-1	1.000	133	0%	121	24.8%	0	-	-	-	-	-
PM20D2	135293	genome.wustl.edu	37	6	89871931	89871931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010853.1	+1	validated	p.E420D	1.000	138	0%	84	25%	6	66.6%	benign(0.006)	tolerated(0.24)	neutral(0.037)	NULL
ANKRD6	22881	genome.wustl.edu	37	6	90340259	90340259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014942.3	+1	validated	p.L569I	0.028	65	0%	44	27.3%	12	50%	benign(0.15)	tolerated(0.3)	neutral(0.042)	NULL
MDN1	23195	genome.wustl.edu	37	6	90390370	90390370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014611.1	-1	provisional	p.C4068Y	0.983	87	0%	51	11.8%	2	0%	benign(0.049)	deleterious(0)	neutral(0.448)	NULL
MDN1	23195	genome.wustl.edu	37	6	90397807	90397807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014611.1	-1	provisional	p.A3782V	0.990	277	0%	82	18.3%	1	100%	probably_damaging(0.977)	tolerated(0.22)	neutral(0.461)	NULL
MDN1	23195	genome.wustl.edu	37	6	90411358	90411358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014611.1	-1	provisional	p.Q2782H	1.000	140	0%	64	21.9%	2	0%	benign(0.025)	tolerated(0.13)	neutral(0.254)	NULL
MDN1	23195	genome.wustl.edu	37	6	90499533	90499533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014611.1	-1	provisional	p.L399P	1.000	82	0%	33	21.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
MDN1	23195	genome.wustl.edu	37	6	90513188	90513188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014611.1	-1	provisional	p.R63H	1.000	172	0%	78	17.9%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GJA10	84694	genome.wustl.edu	37	6	90604210	90604210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032602.1	+1	validated	p.G8D	1.000	166	0%	105	23.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Connexin
GJA10	84694	genome.wustl.edu	37	6	90604675	90604675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032602.1	+1	validated	p.T163I	1.000	311	0%	175	25.7%	0	-	probably_damaging(1)	tolerated(0.49)	deleterious(0.510)	NULL
BACH2	60468	genome.wustl.edu	37	6	90642208	90642208	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021813.2	-1	validated	p.S815	1.000	304	0%	240	19.2%	0	-	-	-	-	NULL
BACH2	60468	genome.wustl.edu	37	6	90647915	90647915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021813.2	-1	validated	p.R664H	1.000	184	0%	124	22.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1
BACH2	60468	genome.wustl.edu	37	6	90660379	90660379	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021813.2	-1	validated	p.H482	0.978	84	0%	62	27.4%	0	-	-	-	-	NULL
BACH2	60468	genome.wustl.edu	37	6	90660720	90660720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021813.2	-1	validated	p.A369T	0.972	10	0%	17	41.2%	0	-	possibly_damaging(0.923)	tolerated(0.13)	deleterious(0.625)	NULL
BACH2	60468	genome.wustl.edu	37	6	90661230	90661230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021813.2	-1	validated	p.V199I	0.029	230	0%	220	20.9%	0	-	benign(0.249)	tolerated(0.43)	neutral(0.039)	NULL
EPHA7	2045	genome.wustl.edu	37	6	93956553	93956553	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004440.3	-1	reviewed	p.R895	1.000	437	0%	159	16.4%	1	0%	-	-	-	superfamily_Protein kinase-like (PK-like)
EPHA7	2045	genome.wustl.edu	37	6	93973633	93973633	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004440.3	-1	reviewed	p.R581	1.000	333	0%	102	12.7%	4	0%	-	-	-	NULL
EPHA7	2045	genome.wustl.edu	37	6	94068083	94068083	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004440.3	-1	reviewed	p.C293	1.000	221	0%	87	20.7%	0	-	-	-	-	superfamily_Growth factor receptor domain
MANEA	79694	genome.wustl.edu	37	6	96034601	96034601	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024641.2	+1	validated	p.L96	0.142	268	0%	221	28.5%	6	50%	-	-	-	NULL
KLHL32	114792	genome.wustl.edu	37	6	97561844	97561844	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052904.3	+1	validated	p.I271	1.000	137	0%	64	23.4%	0	-	-	-	-	superfamily_Galactose oxidase central domain
FBXL4	26235	genome.wustl.edu	37	6	99353373	99353373	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012160.3	-1	reviewed	p.C344	0.981	351	0%	229	18.8%	16	31.2%	-	-	-	superfamily_SSF52047
COQ3	51805	genome.wustl.edu	37	6	99817597	99817597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017421.3	-1	validated	p.A330D	1.000	300	0%	129	23.3%	35	54.2%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SIM1	6492	genome.wustl.edu	37	6	100895255	100895255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005068.2	-1	reviewed	p.R296M	1.000	187	0%	223	16.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PAC,HMMPfam_PAS_3,superfamily_SSF55785
SIM1	6492	genome.wustl.edu	37	6	100898153	100898153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005068.2	-1	reviewed	p.G113D	1.000	134	0%	125	25.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785
SIM1	6492	genome.wustl.edu	37	6	100911231	100911231	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005068.2	-1	reviewed	p.D38	1.000	434	0%	577	22.2%	0	-	-	-	-	HMMPfam_HLH,HMMSmart_HLH
ASCC3	10973	genome.wustl.edu	37	6	100957933	100957933	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006828.2	-1	validated	p.D2112	1.000	281	0%	366	26.8%	52	42.3%	-	-	-	HMMPfam_Sec63,HMMSmart_SEC63
GRIK2	2898	genome.wustl.edu	37	6	102372552	102372552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021956.4	+1	reviewed	p.L609I	1.000	397	0%	180	14.4%	0	-	benign(0.149)	tolerated(0.15)	neutral(0.254)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
PREP	5550	genome.wustl.edu	37	6	105729749	105729749	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002726.3	-1	reviewed	p.L570	0.999	204	0%	135	27.4%	38	42.1%	-	-	-	HMMPfam_Peptidase_S9,superfamily_SSF53474
PREP	5550	genome.wustl.edu	37	6	105845745	105845745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002726.3	-1	reviewed	p.D35N	1.000	497	0.2%	461	21.5%	7	57.1%	possibly_damaging(0.453)	tolerated(0.13)	neutral(0.401)	HMMPfam_Peptidase_S9_N,superfamily_Peptidase_S9A_N
AIM1	202	genome.wustl.edu	37	6	106968995	106968995	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001624.2	+1	validated	p.L896	0.000	132	0%	98	24.5%	2	0%	-	-	-	NULL
AIM1	202	genome.wustl.edu	37	6	106973043	106973043	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001624.2	+1	validated	p.P1019	0.998	537	0%	318	26.1%	1	100%	-	-	-	NULL
AIM1	202	genome.wustl.edu	37	6	107009348	107009348	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001624.2	+1	validated	p.I1629	0.917	307	0%	115	11.3%	9	0%	-	-	-	HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,superfamily_RicinB_like
RTN4IP1	84816	genome.wustl.edu	37	6	107069324	107069324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032730.4	-1	reviewed	p.E157D	1.000	315	0%	205	23.4%	15	33.3%	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	superfamily_GroES-like
C6orf203	51250	genome.wustl.edu	37	6	107361333	107361333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142470.1	+1	validated	p.E128D	0.987	349	0%	246	15.4%	45	17.7%	benign(0.016)	tolerated(0.14)	neutral(0.250)	NULL
PDSS2	57107	genome.wustl.edu	37	6	107533333	107533333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020381.3	-1	reviewed	p.H286Y	1.000	314	0%	105	21.9%	10	40%	possibly_damaging(0.512)	deleterious(0)	deleterious(0.617)	superfamily_Terpenoid synthases
PDSS2	57107	genome.wustl.edu	37	6	107595268	107595268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020381.3	-1	reviewed	p.A199T	1.000	226	0%	78	23.1%	19	42.1%	unknown(0)	deleterious(0)	-	superfamily_Terpenoid synthases
SEC63	11231	genome.wustl.edu	37	6	108218910	108218910	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007214.4	-1	reviewed	p.N461	1.000	380	0%	118	29.7%	35	25.7%	-	-	-	HMMPfam_Sec63,HMMSmart_SEC63
NR2E1	7101	genome.wustl.edu	37	6	108499427	108499427	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003269.3	+1	validated	p.T208	0.671	241	0%	269	22.3%	0	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
ARMC2	84071	genome.wustl.edu	37	6	109274289	109274289	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032131.4	+1	validated	p.N550	0.993	249	0%	281	20.3%	0	-	-	-	-	superfamily_ARM-type_fold
ARMC2	84071	genome.wustl.edu	37	6	109285418	109285418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032131.4	+1	validated	p.H730Y	1.000	527	0%	282	23.4%	1	0%	possibly_damaging(0.895)	tolerated(0.06)	deleterious(0.675)	superfamily_ARM-type_fold
CEP57L1	285753	genome.wustl.edu	37	6	109471324	109471324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083535.1	+1	validated	p.I115K	1.000	185	0%	64	29.7%	5	0%	benign(0.313)	deleterious(0)	deleterious(0.542)	NULL
PPIL6	285755	genome.wustl.edu	37	6	109714039	109714039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173672.4	-1	validated	p.P309H	0.001	577	0.2%	372	29.8%	13	53.8%	possibly_damaging(0.519)	deleterious(0.03)	deleterious(0.539)	HMMPfam_Pro_isomerase
SMPD2	6610	genome.wustl.edu	37	6	109764779	109764779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003080.2	+1	validated	p.L315M	0.039	183	0%	193	24.4%	56	30.3%	benign(0.013)	tolerated(0.18)	neutral(0.057)	NULL
MICAL1	64780	genome.wustl.edu	37	6	109767902	109767902	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022765.3	-1	validated	p.S767	0.001	472	0%	447	23.3%	32	15.6%	-	-	-	NULL
ZBTB24	9841	genome.wustl.edu	37	6	109802746	109802746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014797.2	-1	validated	p.R162W	1.000	493	0%	725	23.2%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AT_hook
AKD1	221264	genome.wustl.edu	37	6	109827651	109827651	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000470564	-1	known	p.S414N	0.999	488	0%	290	22.1%	0	-	-	-	-	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
AKD1	221264	genome.wustl.edu	37	6	109995409	109995409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145128.2	-1	provisional	p.R58H	0.879	142	0%	81	14.8%	5	40%	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC22A16	85413	genome.wustl.edu	37	6	110746237	110746237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033125.2	-1	provisional	p.P525S	1.000	262	0.4%	117	25.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MFS general substrate transporter
CDK19	23097	genome.wustl.edu	37	6	110959861	110959861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015076.3	-1	reviewed	p.V169I	1.000	385	0%	481	16.6%	3	33.3%	probably_damaging(0.993)	tolerated(0.23)	deleterious(0.491)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
AMD1	262	genome.wustl.edu	37	6	111214224	111214224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001634.4	+1	reviewed	p.V274I	1.000	245	0%	126	19.8%	57	61.4%	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_SAM_decarbox,superfamily_S-AdenosylMet_decarbase_core
REV3L	5980	genome.wustl.edu	37	6	111650873	111650873	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002912.3	-1	validated	p.K2701	1.000	328	0%	158	18.4%	7	42.8%	-	-	-	HMMPfam_DNA_pol_B,HMMSmart_SM00486,superfamily_DNA/RNA polymerases
REV3L	5980	genome.wustl.edu	37	6	111686485	111686485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002912.3	-1	validated	p.L2246M	1.000	572	0%	238	21.4%	3	33.3%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_Ribonuclease H-like
REV3L	5980	genome.wustl.edu	37	6	111694388	111694388	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002912.3	-1	validated	p.S1724R	0.998	502	0%	177	21.5%	4	50%	possibly_damaging(0.612)	deleterious(0)	deleterious(0.656)	superfamily_Ribonuclease H-like
REV3L	5980	genome.wustl.edu	37	6	111694530	111694530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002912.3	-1	validated	p.K1676N	1.000	192	0%	81	25.9%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Ribonuclease H-like
TRAF3IP2	10758	genome.wustl.edu	37	6	111901546	111901546	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_147686.2	-1	reviewed	p.P292	0.245	75	0%	22	18.2%	20	30%	-	-	-	NULL
LAMA4	3910	genome.wustl.edu	37	6	112462663	112462663	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105206.1	-1	reviewed	p.L904	1.000	327	0%	123	11.4%	2	0%	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
LAMA4	3910	genome.wustl.edu	37	6	112508673	112508673	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000368640	-1	known	p.T119M	0.999	237	0%	65	16.9%	1	0%	-	-	-	HMMPfam_Laminin_I
HDAC2	3066	genome.wustl.edu	37	6	114277820	114277820	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001527.3	-1	reviewed	p.L201	0.994	230	0%	157	22.9%	75	44%	-	-	-	HMMPfam_Hist_deacetyl,superfamily_SSF52768
TSPYL4	23270	genome.wustl.edu	37	6	116574585	116574585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021648.4	-1	validated	p.R196M	0.027	124	0%	144	14.6%	5	20%	possibly_damaging(0.673)	tolerated(0.11)	deleterious(0.510)	NULL
DSE	29940	genome.wustl.edu	37	6	116756770	116756770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080976.1	+1	reviewed	p.S380L	0.993	361	0%	163	30.7%	1	0%	benign(0.002)	deleterious(0.03)	neutral(0.364)	NULL
DSE	29940	genome.wustl.edu	37	6	116757979	116757979	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080976.1	+1	reviewed	p.K783M	1.000	160	0%	73	31.5%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM26E	254228	genome.wustl.edu	37	6	116833152	116833152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153711.2	+1	validated	p.Y98C	0.012	99	0%	41	14.6%	1	0%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
ZUFSP	221302	genome.wustl.edu	37	6	116977971	116977971	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145062.2	-1	validated	p.Q279	0.281	573	0%	339	10.6%	12	8.3%	-	-	-	NULL
ROS1	6098	genome.wustl.edu	37	6	117609960	117609960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002944.2	-1	reviewed	p.D2247Y	0.992	228	0.4%	95	12.6%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
ROS1	6098	genome.wustl.edu	37	6	117674265	117674265	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002944.2	-1	reviewed	p.D1403	0.027	608	0%	187	21.9%	0	-	-	-	-	superfamily_SSF63825
ROS1	6098	genome.wustl.edu	37	6	117679091	117679091	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002944.2	-1	reviewed	p.E1244*	0.743	347	0%	159	20.1%	0	-	-	-	-	superfamily_SSF63825
ROS1	6098	genome.wustl.edu	37	6	117681539	117681539	+	Silent	SNP	T	T	C	rs184367407	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002944.2	-1	reviewed	p.G1137	0.997	174	0%	149	18.1%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
ROS1	6098	genome.wustl.edu	37	6	117706996	117706996	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002944.2	-1	reviewed	p.Y718*	1.000	237	0%	169	17.2%	0	-	-	-	-	HMMSmart_LY,superfamily_SSF63825
DCBLD1	285761	genome.wustl.edu	37	6	117859877	117859877	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173674.1	+1	provisional	p.W285*	1.000	107	0%	115	27%	4	0%	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
DCBLD1	285761	genome.wustl.edu	37	6	117862117	117862117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173674.1	+1	provisional	p.S429I	0.000	174	0%	143	21.7%	6	66.6%	possibly_damaging(0.455)	tolerated(0.22)	neutral(0.191)	NULL
ASF1A	25842	genome.wustl.edu	37	6	119226916	119226916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014034.2	+1	reviewed	p.V109F	1.000	319	0%	245	17.6%	46	41.3%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	HMMPfam_ASF1_hist_chap,superfamily_ASF1-like
FAM184A	79632	genome.wustl.edu	37	6	119332597	119332597	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024581.4	-1	validated	e6-1	1.000	290	0%	378	22%	0	-	-	-	-	-
C6orf170	221322	genome.wustl.edu	37	6	121638663	121638663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152730.4	-1	validated	p.D158G	1.000	806	0%	371	25.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
LOC728666	728666	genome.wustl.edu	37	6	126964811	126964811	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_015645.3	+1	model	NULL	0.000	54	0%	104	25%	0	-	-	-	-	-
KIAA0408	9729	genome.wustl.edu	37	6	127768023	127768023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014702.4	-1	validated	p.H481Y	0.000	226	0%	71	21.1%	1	0%	possibly_damaging(0.55)	tolerated(0.52)	neutral(0.196)	NULL
SOGA3	387104	genome.wustl.edu	37	6	127794485	127794485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012279.2	-1	validated	p.L929I	1.000	379	0%	422	19.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
LOC100287918	100287918	genome.wustl.edu	37	6	127981439	127981439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342669.1	+1	model	p.T160A	0.999	158	0%	124	15.3%	0	-	-	-	-	NULL
THEMIS	387357	genome.wustl.edu	37	6	128134240	128134240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010923.2	-1	reviewed	p.V516I	0.056	202	0%	102	26.5%	3	0%	benign(0.324)	tolerated(0.39)	neutral(0.118)	NULL
THEMIS	387357	genome.wustl.edu	37	6	128150862	128150862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010923.2	-1	reviewed	p.R156S	0.937	367	0.3%	267	13.9%	3	0%	probably_damaging(0.975)	tolerated(0.37)	neutral(0.436)	NULL
PTPRK	5796	genome.wustl.edu	37	6	128294873	128294873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135648.1	-1	validated	p.L1363I	1.000	162	0%	48	20.8%	24	37.5%	probably_damaging(0.987)	deleterious(0.05)	deleterious(0.782)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
PTPRK	5796	genome.wustl.edu	37	6	128312441	128312441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135648.1	-1	validated	p.R999W	1.000	399	0%	112	31.2%	15	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
LAMA2	3908	genome.wustl.edu	37	6	129573326	129573326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000426.3	+1	reviewed	p.T661I	0.098	232	0%	106	29.2%	0	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	HMMPfam_Laminin_B,superfamily_ConA_like_lec_gl,HMMSmart_LamB
LAMA2	3908	genome.wustl.edu	37	6	129777579	129777579	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000426.3	+1	reviewed	p.T2269	0.853	212	0%	98	18.4%	0	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
SAMD3	154075	genome.wustl.edu	37	6	130465892	130465892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017373.2	-1	validated	p.E446K	1.000	93	0%	34	17.6%	6	0%	possibly_damaging(0.753)	tolerated(0.3)	neutral(0.305)	NULL
SAMD3	154075	genome.wustl.edu	37	6	130497111	130497111	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017373.2	-1	validated	p.R233*	1.000	490	0%	259	23.2%	5	0%	-	-	-	NULL
SAMD3	154075	genome.wustl.edu	37	6	130535624	130535624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017373.2	-1	validated	p.V43I	1.000	213	0%	63	19%	1	0%	benign(0.018)	deleterious(0)	neutral(0.445)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
AKAP7	9465	genome.wustl.edu	37	6	131520613	131520613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016377.2	+1	reviewed	p.R179M	0.997	308	0.3%	84	21.4%	6	50%	probably_damaging(0.953)	deleterious(0.03)	deleterious(0.761)	superfamily_LigT-like,HMMPfam_AKAP7_NLS
AKAP7	9465	genome.wustl.edu	37	6	131602765	131602765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016377.2	+1	reviewed	p.L294M	0.997	117	0%	32	25%	5	100%	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	HMMPfam_AKAP7_RIRII_bdg
MED23	9439	genome.wustl.edu	37	6	131914277	131914277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004830.2	-1	reviewed	p.N1089K	1.000	200	0%	63	9.5%	11	18.1%	possibly_damaging(0.891)	tolerated(0.66)	neutral(0.353)	NULL
MOXD1	26002	genome.wustl.edu	37	6	132618386	132618386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015529.2	-1	validated	p.T583M	0.007	309	0%	81	19.8%	35	11.4%	possibly_damaging(0.598)	tolerated(0.07)	deleterious(0.526)	NULL
MOXD1	26002	genome.wustl.edu	37	6	132618434	132618434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015529.2	-1	validated	p.P567L	0.999	285	0%	75	26.7%	32	6.2%	benign(0.175)	tolerated(0.2)	neutral(0.065)	NULL
STX7	8417	genome.wustl.edu	37	6	132791751	132791751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003569.2	-1	validated	p.E134D	0.262	430	0%	147	27.2%	29	34.4%	benign(0)	tolerated(0.59)	neutral(0.004)	superfamily_t-snare proteins
STX7	8417	genome.wustl.edu	37	6	132796786	132796786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003569.2	-1	validated	p.R34I	0.996	413	0%	157	19.1%	25	44%	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMPfam_Syntaxin,HMMSmart_SM00503,superfamily_t-snare proteins
TAAR8	83551	genome.wustl.edu	37	6	132874243	132874243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053278.1	+1	provisional	p.V138I	0.000	419	0%	110	22.7%	0	-	benign(0.003)	tolerated(0.42)	neutral(0.014)	HMMPfam_7tm_1,superfamily_SSF81321
TAAR2	9287	genome.wustl.edu	37	6	132939215	132939215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033080.1	-1	validated	p.V44L	0.000	235	0%	56	19.6%	0	-	benign(0.001)	tolerated(0.44)	neutral(0.013)	superfamily_Family A G protein-coupled receptor-like
TAAR1	134864	genome.wustl.edu	37	6	132967062	132967062	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138327.1	-1	provisional	p.Y27	0.701	290	0%	94	22.3%	1	0%	-	-	-	superfamily_SSF81321
VNN1	8876	genome.wustl.edu	37	6	133014313	133014313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004666.2	-1	reviewed	p.D226Y	0.871	331	0%	97	22.7%	1	0%	possibly_damaging(0.87)	deleterious(0)	deleterious(0.782)	HMMPfam_CN_hydrolase,superfamily_Ntlse/CNhydtse
SLC18B1	116843	genome.wustl.edu	37	6	133092071	133092071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052831.2	-1	validated	p.A421V	0.000	140	0%	93	20.4%	20	65%	benign(0.001)	tolerated(1)	-	superfamily_MFS general substrate transporter
SLC18B1	116843	genome.wustl.edu	37	6	133110964	133110964	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052831.2	-1	validated	p.G98*	1.000	421	0%	255	16.1%	15	0%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
EYA4	2070	genome.wustl.edu	37	6	133846193	133846193	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172105.3	+1	reviewed	p.G593	1.000	424	0%	111	9.9%	0	-	-	-	-	HMMPfam_Hydrolase
SLC2A12	154091	genome.wustl.edu	37	6	134349939	134349939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145176.2	-1	validated	p.G342S	1.000	245	0%	107	18.7%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
SGK1	6446	genome.wustl.edu	37	6	134492796	134492796	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143676.1	-1	reviewed	p.L382	0.974	161	0%	180	14.4%	35	37.1%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SGK1	6446	genome.wustl.edu	37	6	134494492	134494492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143676.1	-1	reviewed	p.L208F	1.000	475	0%	533	21.4%	23	26%	benign(0.287)	tolerated(0.12)	neutral(0.349)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
ALDH8A1	64577	genome.wustl.edu	37	6	135239890	135239890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022568.2	-1	reviewed	p.T376M	1.000	157	0%	95	21.1%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldedh,superfamily_ALDH-like
LOC100288216	100288216	genome.wustl.edu	37	6	135240009	135240009	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342673.1	+1	model	p.L150	0.000	153	0%	129	21.7%	0	-	-	-	-	NULL
HBS1L	10767	genome.wustl.edu	37	6	135317986	135317986	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006620.3	-1	reviewed	p.E298	0.982	370	0%	145	20%	17	35.2%	-	-	-	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYB	4602	genome.wustl.edu	37	6	135516956	135516956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130173.1	+1	reviewed	p.G340E	1.000	421	0%	242	21.1%	4	50%	benign(0.282)	tolerated(0.23)	neutral(0.128)	NULL
AHI1	54806	genome.wustl.edu	37	6	135644407	135644407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134830.1	-1	reviewed	p.R1074H	1.000	379	0%	135	18.5%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
AHI1	54806	genome.wustl.edu	37	6	135787133	135787133	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134830.1	-1	reviewed	p.Q190*	0.987	830	0%	576	24.7%	2	0%	-	-	-	superfamily_WD40 repeat-like
PDE7B	27115	genome.wustl.edu	37	6	136495026	136495026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018945.3	+1	reviewed	p.T268I	1.000	250	0%	74	13.5%	11	63.6%	benign(0.429)	tolerated(0.37)	neutral(0.159)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
PDE7B	27115	genome.wustl.edu	37	6	136512819	136512819	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018945.3	+1	reviewed	p.L398	0.956	60	0%	54	18.5%	16	37.5%	-	-	-	HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like
BCLAF1	9774	genome.wustl.edu	37	6	136599023	136599023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014739.2	-1	reviewed	p.K332N	1.000	88	0%	40	30%	32	34.3%	possibly_damaging(0.722)	tolerated(0.24)	neutral(0.299)	NULL
BCLAF1	9774	genome.wustl.edu	37	6	136600941	136600941	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014739.2	-1	reviewed	p.R22*	1.000	248	0%	155	15.5%	16	50%	-	-	-	NULL
MAP3K5	4217	genome.wustl.edu	37	6	136883646	136883646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005923.3	-1	reviewed	p.P1290L	1.000	565	0.2%	439	20.3%	10	30%	probably_damaging(0.98)	tolerated(0.18)	deleterious(0.480)	NULL
MAP3K5	4217	genome.wustl.edu	37	6	136913412	136913412	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005923.3	-1	reviewed	p.F1042V	1.000	233	0%	99	16.2%	10	20%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
MAP3K5	4217	genome.wustl.edu	37	6	136977446	136977446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005923.3	-1	reviewed	p.P560L	1.000	193	0%	96	22.9%	4	25%	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	NULL
PEX7	5191	genome.wustl.edu	37	6	137166791	137166791	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000288.3	+1	reviewed	p.Q126	1.000	659	0%	281	20.6%	13	46.1%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SLC35D3	340146	genome.wustl.edu	37	6	137245350	137245350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008783.1	+1	provisional	p.S256N	1.000	89	0%	102	29.4%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_UAA
KIAA1244	57221	genome.wustl.edu	37	6	138655146	138655146	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020340.4	+1	validated	p.H1721Q	1.000	166	0%	104	13.5%	2	50%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
NHSL1	57224	genome.wustl.edu	37	6	138750848	138750848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144060.1	-1	validated	p.R1362K	1.000	288	0%	277	25.3%	10	10%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
NHSL1	57224	genome.wustl.edu	37	6	138752457	138752457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144060.1	-1	validated	p.P1009T	0.993	101	0%	82	29.3%	12	41.6%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ECT2L	345930	genome.wustl.edu	37	6	139167798	139167798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077706.1	+1	validated	p.R296Q	1.000	324	0.6%	140	17.1%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
REPS1	85021	genome.wustl.edu	37	6	139229850	139229850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031922.3	-1	validated	p.T723M	1.000	539	0%	472	22.5%	78	43.5%	possibly_damaging(0.859)	deleterious(0.01)	deleterious(0.738)	NULL
TXLNB	167838	genome.wustl.edu	37	6	139564361	139564361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153235.3	-1	validated	p.E453K	0.981	396	0%	327	22%	0	-	possibly_damaging(0.836)	tolerated(0.08)	deleterious(0.619)	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143074763	143074763	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006734.3	-1	provisional	p.D2274	0.959	205	0%	74	25.7%	32	53.1%	-	-	-	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143092906	143092906	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006734.3	-1	provisional	p.K990	1.000	249	0%	169	24.3%	5	20%	-	-	-	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143095247	143095247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006734.3	-1	provisional	p.S210F	1.000	277	0%	218	19.7%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
AIG1	51390	genome.wustl.edu	37	6	143654457	143654457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016108.2	+1	validated	p.Y185C	1.000	324	0%	197	17.3%	71	30.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Far-17a_AIG1
FUCA2	2519	genome.wustl.edu	37	6	143816961	143816961	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032020.3	-1	validated	p.Q429	0.000	235	0%	69	27.5%	245	34.2%	-	-	-	NULL
LTV1	84946	genome.wustl.edu	37	6	144178517	144178517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032860.3	+1	provisional	p.L159I	1.000	936	0.1%	390	23.8%	24	58.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_LTV
LTV1	84946	genome.wustl.edu	37	6	144181562	144181562	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032860.3	+1	provisional	e7-1	1.000	559	0%	187	19.8%	2	50%	-	-	-	-
PLAGL1	5325	genome.wustl.edu	37	6	144263439	144263439	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080951.1	-1	reviewed	p.R172*	1.000	161	0%	60	18.3%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PLAGL1	5325	genome.wustl.edu	37	6	144263491	144263491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080951.1	-1	reviewed	p.K154N	1.000	235	0%	84	16.7%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_C2H2 and C2HC zinc fingers
PLAGL1	5325	genome.wustl.edu	37	6	144263799	144263799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080951.1	-1	reviewed	p.H52Y	1.000	431	0%	219	22.8%	1	100%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
UTRN	7402	genome.wustl.edu	37	6	144768771	144768771	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007124.2	+1	reviewed	p.T586P	0.997	225	0%	127	24.4%	0	-	possibly_damaging(0.698)	tolerated(0.08)	deleterious(0.551)	HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	144800959	144800959	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007124.2	+1	reviewed	p.Q1116H	0.993	216	0%	141	17.7%	5	40%	benign(0.145)	tolerated(0.55)	neutral(0.019)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	144860572	144860572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007124.2	+1	reviewed	p.W2171L	1.000	172	0%	42	35.7%	3	0%	possibly_damaging(0.804)	tolerated(0.19)	neutral(0.352)	HMMSmart_SPEC,superfamily_Spectrin
SHPRH	257218	genome.wustl.edu	37	6	146267368	146267368	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042683.2	-1	validated	e6+1	1.000	554	0%	134	15.7%	0	-	-	-	-	-
SHPRH	257218	genome.wustl.edu	37	6	146267458	146267458	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042683.2	-1	validated	p.F411C	1.000	540	0%	152	22.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
SHPRH	257218	genome.wustl.edu	37	6	146276266	146276266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042683.2	-1	validated	p.V65M	0.514	266	0%	233	17.2%	1	0%	benign(0.229)	tolerated(0.13)	neutral(0.276)	NULL
GRM1	2911	genome.wustl.edu	37	6	146480699	146480699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000838.3	+1	reviewed	p.L306I	0.999	102	0%	44	13.6%	0	-	possibly_damaging(0.804)	tolerated(0.07)	deleterious(0.621)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRM1	2911	genome.wustl.edu	37	6	146673403	146673403	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000838.3	+1	reviewed	p.E402*	1.000	201	0%	96	13.5%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
GRM1	2911	genome.wustl.edu	37	6	146747733	146747733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114329.1	+1	reviewed	p.P900L	1.000	237	0%	187	23.5%	0	-	unknown(0)	deleterious(0.02)	-	NULL
ADGB	79747	genome.wustl.edu	37	6	146997460	146997460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024694.3	+1	provisional	p.A367T	0.045	267	0%	66	19.7%	0	-	possibly_damaging(0.84)	deleterious(0.01)	deleterious(0.727)	HMMSmart_SM00230
ADGB	79747	genome.wustl.edu	37	6	147105825	147105825	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024694.3	+1	provisional	p.H1369	0.874	266	0%	113	25.7%	0	-	-	-	-	NULL
ADGB	79747	genome.wustl.edu	37	6	147128720	147128720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000367489	+1	known	p.K612N	0.983	49	0%	58	20.7%	0	-	unknown(0)	-	-	NULL
SASH1	23328	genome.wustl.edu	37	6	148865589	148865589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015278.3	+1	validated	p.R995C	1.000	57	0%	56	21.4%	9	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SASH1	23328	genome.wustl.edu	37	6	148865947	148865947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015278.3	+1	validated	p.S1114Y	1.000	75	0%	61	29.5%	8	37.5%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TAB2	23118	genome.wustl.edu	37	6	149700376	149700376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015093.4	+1	reviewed	p.A442V	1.000	240	0%	126	13.5%	17	5.8%	benign(0.001)	tolerated(0.34)	neutral(0.023)	NULL
TAB2	23118	genome.wustl.edu	37	6	149719131	149719131	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015093.4	+1	reviewed	p.S597R	0.999	327	0%	245	16.7%	18	22.2%	possibly_damaging(0.923)	tolerated(0.1)	deleterious(0.659)	NULL
ZC3H12D	340152	genome.wustl.edu	37	6	149783021	149783021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207360.2	-1	validated	p.V131I	1.000	308	0%	285	23.5%	1	0%	probably_damaging(0.974)	tolerated(0.08)	deleterious(0.716)	NULL
PPIL4	85313	genome.wustl.edu	37	6	149847798	149847798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139126.2	-1	reviewed	p.P265S	0.998	493	0%	244	24.6%	31	48.3%	benign(0.001)	tolerated(0.8)	neutral(0.001)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PPIL4	85313	genome.wustl.edu	37	6	149862662	149862662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139126.2	-1	reviewed	p.N44S	1.000	375	0%	305	13.1%	8	37.5%	benign(0.002)	tolerated(0.84)	neutral(0.001)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
KATNA1	11104	genome.wustl.edu	37	6	149924431	149924431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007044.2	-1	reviewed	p.F234L	1.000	418	0%	210	25.2%	25	24%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PCMT1	5110	genome.wustl.edu	37	6	150123433	150123433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005389.2	+1	validated	p.G201D	1.000	277	0%	136	26.5%	150	40.6%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_PCMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PPP1R14C	81706	genome.wustl.edu	37	6	150535919	150535919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030949.2	+1	validated	p.L116I	1.000	384	0.3%	186	12.4%	3	0%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_PP1_inhibitor,superfamily_PP1_inhibitor
IYD	389434	genome.wustl.edu	37	6	150710674	150710674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203395.2	+1	reviewed	p.T122M	0.653	422	0%	208	22.1%	0	-	possibly_damaging(0.825)	deleterious(0.01)	deleterious(0.718)	HMMPfam_Nitroreductase,superfamily_FMN-dependent nitroreductase-like
MTHFD1L	25902	genome.wustl.edu	37	6	151277182	151277182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015440.3	+1	validated	p.N593S	0.000	274	0%	133	12%	16	18.7%	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases
MTHFD1L	25902	genome.wustl.edu	37	6	151336094	151336094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015440.3	+1	validated	p.V796M	1.000	435	0.2%	235	23.4%	52	40.3%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases
AKAP12	9590	genome.wustl.edu	37	6	151672412	151672412	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005100.3	+1	reviewed	p.G962	0.000	75	0%	55	14.5%	4	25%	-	-	-	NULL
AKAP12	9590	genome.wustl.edu	37	6	151673181	151673181	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005100.3	+1	reviewed	p.E1219*	0.009	109	0%	53	30.2%	8	25%	-	-	-	NULL
RMND1	55005	genome.wustl.edu	37	6	151744746	151744746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017909.2	-1	validated	p.R284M	1.000	402	0%	164	23.2%	26	53.8%	possibly_damaging(0.565)	tolerated(0.08)	deleterious(0.493)	HMMPfam_DUF155
SYNE1	23345	genome.wustl.edu	37	6	152453303	152453303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182961.2	-1	reviewed	p.S8683F	1.000	286	0%	215	23.3%	35	14.2%	possibly_damaging(0.592)	deleterious(0)	deleterious(0.649)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152472693	152472693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182961.2	-1	reviewed	p.L8149I	1.000	123	0%	72	18.1%	10	20%	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152557412	152557412	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182961.2	-1	reviewed	p.Y6742	1.000	466	0%	250	23.6%	2	0%	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152615120	152615120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182961.2	-1	reviewed	p.R5942H	1.000	210	0%	142	22.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152673435	152673435	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182961.2	-1	reviewed	p.E3769	1.000	254	0%	133	24.1%	0	-	-	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152728220	152728220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182961.2	-1	reviewed	p.P2218S	0.997	483	0%	141	9.2%	0	-	benign(0)	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152749512	152749512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182961.2	-1	reviewed	p.L1602M	0.993	107	0%	51	23.5%	0	-	possibly_damaging(0.459)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FBXO5	26271	genome.wustl.edu	37	6	153296401	153296401	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012177.3	-1	reviewed	p.Q153	0.000	543	0%	453	23.8%	8	12.5%	-	-	-	NULL
SCAF8	22828	genome.wustl.edu	37	6	155153580	155153580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014892.3	+1	validated	p.S956L	0.027	136	0%	55	14.5%	26	38.4%	possibly_damaging(0.883)	deleterious(0)	deleterious(0.789)	NULL
SCAF8	22828	genome.wustl.edu	37	6	155153743	155153743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014892.3	+1	validated	p.Q1010H	1.000	86	0%	32	25%	23	43.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TIAM2	26230	genome.wustl.edu	37	6	155450566	155450566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012454.3	+1	reviewed	p.S70I	0.303	113	0.9%	85	24.7%	0	-	possibly_damaging(0.491)	deleterious(0)	deleterious(0.608)	NULL
TIAM2	26230	genome.wustl.edu	37	6	155503406	155503406	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012454.3	+1	reviewed	p.R918	0.767	482	0%	165	16.4%	1	0%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
TIAM2	26230	genome.wustl.edu	37	6	155575684	155575684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012454.3	+1	reviewed	p.R1482Q	0.986	393	0%	374	21.1%	7	0%	possibly_damaging(0.948)	tolerated(0.38)	neutral(0.409)	NULL
TMEM242	729515	genome.wustl.edu	37	6	157739938	157739938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018452.4	-1	validated	p.T68M	0.997	160	0%	131	28.2%	37	29.7%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_DUF1358
SYNJ2	8871	genome.wustl.edu	37	6	158454682	158454682	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003898.3	+1	reviewed	p.G227	1.000	48	0%	35	25.7%	4	25%	-	-	-	HMMPfam_Syja_N
SERAC1	84947	genome.wustl.edu	37	6	158549293	158549293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032861.3	-1	validated	p.H288Y	0.996	267	0%	86	24.4%	4	25%	probably_damaging(0.998)	tolerated(0.27)	deleterious(0.508)	superfamily_ARM repeat
TULP4	56995	genome.wustl.edu	37	6	158873287	158873287	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020245.3	+1	validated	p.R282	1.000	165	0%	76	13.2%	3	0%	-	-	-	superfamily_WD40 repeat-like
TAGAP	117289	genome.wustl.edu	37	6	159457336	159457336	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_054114.3	-1	reviewed	p.P573	0.179	36	0%	32	12.5%	7	0%	-	-	-	NULL
FNDC1	84624	genome.wustl.edu	37	6	159654772	159654772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032532.2	+1	validated	p.Q1076H	0.002	15	0%	19	26.3%	0	-	unknown(0)	tolerated(0.24)	-	NULL
FNDC1	84624	genome.wustl.edu	37	6	159687141	159687141	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000329629	+1	known	p.R1666C	0.960	349	0%	121	20.7%	11	0%	-	-	-	NULL
TCP1	6950	genome.wustl.edu	37	6	160200210	160200210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030752.2	-1	reviewed	p.S513I	1.000	354	0%	268	19.4%	450	46.2%	benign(0.186)	tolerated(0.15)	neutral(0.259)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase
PNLDC1	154197	genome.wustl.edu	37	6	160227065	160227065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173516.1	+1	provisional	p.W160L	1.000	259	0%	254	22%	0	-	probably_damaging(1)	tolerated(0.82)	deleterious(0.500)	HMMPfam_CAF1,superfamily_Ribonuclease H-like
PNLDC1	154197	genome.wustl.edu	37	6	160239630	160239630	+	Missense_Mutation	SNP	G	G	A	rs190950900	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173516.1	+1	provisional	p.V390M	0.995	71	0%	60	23.3%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
PNLDC1	154197	genome.wustl.edu	37	6	160240124	160240124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173516.1	+1	provisional	p.Q457H	1.000	178	0%	244	11.1%	0	-	benign(0.409)	tolerated(0.23)	neutral(0.174)	NULL
IGF2R	3482	genome.wustl.edu	37	6	160481599	160481599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000876.2	+1	reviewed	p.V1038I	1.000	453	0%	259	23.6%	7	28.5%	benign(0)	tolerated(1)	-	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
IGF2R	3482	genome.wustl.edu	37	6	160493857	160493857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000876.2	+1	reviewed	p.E1544G	1.000	324	0%	192	22.4%	15	13.3%	benign(0.002)	tolerated(0.35)	neutral(0.021)	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
IGF2R	3482	genome.wustl.edu	37	6	160501267	160501267	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000876.2	+1	reviewed	p.A1931	0.004	147	0%	105	25.7%	23	43.4%	-	-	-	HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,superfamily_Mannose 6-phosphate receptor domain,superfamily_Kringle-like
IGF2R	3482	genome.wustl.edu	37	6	160510221	160510221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000876.2	+1	reviewed	p.V2135L	1.000	155	0%	156	25.6%	38	42.1%	possibly_damaging(0.74)	tolerated(0.05)	deleterious(0.617)	superfamily_Mannose 6-phosphate receptor domain
LOC100289162	100289162	genome.wustl.edu	37	6	160543066	160543066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342677.1	-1	model	p.R545C	1.000	67	0%	76	23.7%	0	-	-	-	-	NULL
SLC22A1	6580	genome.wustl.edu	37	6	160560819	160560819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003057.2	+1	reviewed	p.R399H	0.001	168	0%	131	26%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A1	6580	genome.wustl.edu	37	6	160579593	160579593	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003057.2	+1	reviewed	p.T548	0.003	236	0%	90	20%	2	0%	-	-	-	NULL
SLC22A2	6582	genome.wustl.edu	37	6	160670367	160670367	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003058.2	-1	reviewed	p.Y241	1.000	202	0%	95	24.2%	0	-	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
LOC100289195	100289195	genome.wustl.edu	37	6	160874488	160874488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342678.1	-1	model	p.T290N	0.000	799	0%	230	10.4%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
PARK2	5071	genome.wustl.edu	37	6	161771176	161771176	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004562.2	-1	reviewed	p.C451	0.076	26	0%	28	28.6%	0	-	-	-	-	HMMSmart_SM00647,superfamily_RING/U-box
LOC100129958	100129958	genome.wustl.edu	37	6	162990473	162990473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001719102.1	+1	model	p.A221T	1.000	35	0%	40	12.5%	1	100%	-	-	-	HMMPfam_Filament,PatternScan_IF
C6orf118	168090	genome.wustl.edu	37	6	165703375	165703375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144980.3	-1	validated	p.E434D	1.000	273	0%	138	18.1%	0	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
T	6862	genome.wustl.edu	37	6	166579329	166579329	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003181.2	-1	reviewed	e3-1	1.000	284	0%	338	22.5%	0	-	-	-	-	-
RPS6KA2	6196	genome.wustl.edu	37	6	166952240	166952240	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001006932.1	-1	reviewed	p.S52	1.000	191	0%	116	12.9%	3	0%	-	-	-	superfamily_Kinase_like
GPR31	2853	genome.wustl.edu	37	6	167570984	167570984	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005299.2	-1	validated	p.R112	0.998	22	0%	23	30.4%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
TTLL2	83887	genome.wustl.edu	37	6	167752209	167752209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031949.4	+1	validated	p.A41V	0.004	345	0%	232	23.7%	0	-	unknown(0)	tolerated(0.08)	-	NULL
MLLT4	4301	genome.wustl.edu	37	6	168343835	168343835	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040001.1	+1	validated	p.I1034	1.000	844	0%	350	20.3%	16	81.2%	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
FRMD1	79981	genome.wustl.edu	37	6	168457951	168457951	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024919.3	-1	validated	p.H492	0.074	29	0%	26	42.3%	0	-	-	-	-	NULL
DACT2	168002	genome.wustl.edu	37	6	168708391	168708391	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_214462.3	-1	validated	p.S682	0.991	27	0%	30	23.3%	27	51.8%	-	-	-	NULL
SMOC2	64094	genome.wustl.edu	37	6	169051454	169051454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022138.2	+1	reviewed	p.S345L	0.010	72	0%	47	12.8%	12	0%	possibly_damaging(0.872)	tolerated(0.27)	neutral(0.373)	superfamily_SSF47473
THBS2	7058	genome.wustl.edu	37	6	169633085	169633085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003247.2	-1	reviewed	p.P560L	0.983	70	0%	99	23.2%	1	0%	benign(0.425)	deleterious(0.03)	deleterious(0.502)	HMMSmart_EGF,superfamily_SSF57196
LOC100289471	100289471	genome.wustl.edu	37	6	169648905	169648905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342681.1	+1	model	p.A64T	0.019	165	0%	154	26.6%	0	-	-	-	-	NULL
LINC00242	401288	genome.wustl.edu	37	6	170190547	170190547	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_026781.1	-1	validated	NULL	0.000	201	0%	141	20.6%	0	-	-	-	-	-
DLL1	28514	genome.wustl.edu	37	6	170592091	170592091	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005618.3	-1	reviewed	p.C717	0.986	298	0.3%	385	23.4%	7	0%	-	-	-	NULL
FAM120B	84498	genome.wustl.edu	37	6	170626674	170626674	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032448.1	+1	provisional	p.E66*	1.000	499	0%	301	21.9%	6	16.6%	-	-	-	superfamily_PIN domain-like
TBP	6908	genome.wustl.edu	37	6	170871016	170871016	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003194.4	+1	reviewed	p.Q64	1.000	32	0%	25	28%	9	22.2%	-	-	-	NULL
HEATR2	54919	genome.wustl.edu	37	7	810217	810217	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000440747	+1	known	p.R433C	0.000	58	0%	56	26.8%	47	53.1%	-	-	-	superfamily_ARM repeat
SUN1	23353	genome.wustl.edu	37	7	891106	891106	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000433212	+1	known	p.R97C	0.068	204	0%	245	19.2%	23	13%	-	-	-	NULL
GET4	51608	genome.wustl.edu	37	7	930664	930664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015949.2	+1	validated	p.R189H	1.000	204	0%	183	25.1%	88	39.7%	benign(0.016)	tolerated(0.25)	neutral(0.037)	HMMPfam_DUF410
GPR146	115330	genome.wustl.edu	37	7	1097715	1097715	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138445.2	+1	provisional	p.D188	0.993	28	0%	31	19.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
INTS1	26173	genome.wustl.edu	37	7	1522287	1522287	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080453.2	-1	validated	p.L1200	0.982	30	0%	35	17.1%	34	32.3%	-	-	-	NULL
INTS1	26173	genome.wustl.edu	37	7	1526582	1526582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080453.2	-1	validated	p.K934N	0.879	60	0%	60	13.3%	30	13.3%	probably_damaging(0.962)	deleterious(0.02)	deleterious(0.788)	NULL
INTS1	26173	genome.wustl.edu	37	7	1542572	1542572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080453.2	-1	validated	p.P105L	1.000	186	0%	202	17.3%	7	14.2%	possibly_damaging(0.672)	deleterious(0.01)	deleterious(0.643)	NULL
INTS1	26173	genome.wustl.edu	37	7	1542764	1542764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080453.2	-1	validated	p.T41M	0.974	112	0.9%	155	19.4%	10	40%	possibly_damaging(0.906)	tolerated(0.11)	deleterious(0.631)	NULL
MAFK	7975	genome.wustl.edu	37	7	1579606	1579606	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002360.3	+1	validated	p.P22	0.436	40	0%	38	23.7%	8	12.5%	-	-	-	HMMPfam_bZIP_Maf
MAFK	7975	genome.wustl.edu	37	7	1579906	1579906	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002360.3	+1	validated	p.A122	1.000	22	0%	18	27.8%	1	0%	-	-	-	NULL
TMEM184A	202915	genome.wustl.edu	37	7	1590606	1590606	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001097620.1	-1	validated	p.L78	1.000	120	0.8%	129	25.6%	15	26.6%	-	-	-	HMMPfam_DUF300
PSMG3	84262	genome.wustl.edu	37	7	1607342	1607342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134340.1	-1	validated	p.V121L	1.000	83	0%	77	27.3%	173	44.5%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_DUF2372
ELFN1	392617	genome.wustl.edu	37	7	1784874	1784874	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128636.2	+1	validated	p.T214	0.331	9	0.000	15	0.400	1	0%	-	-	-	HMMSmart_SM00082,superfamily_L domain-like
ELFN1	392617	genome.wustl.edu	37	7	1785894	1785894	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128636.2	+1	validated	p.E554	1.000	17	0%	25	24%	3	0%	-	-	-	NULL
MAD1L1	8379	genome.wustl.edu	37	7	2259082	2259082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013836.1	-1	reviewed	p.A161T	0.000	101	0%	106	24.5%	36	41.6%	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_MAD
EIF3B	8662	genome.wustl.edu	37	7	2402393	2402393	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037283.1	+1	validated	p.F269C	1.000	119	0%	122	18%	114	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EIF3B	8662	genome.wustl.edu	37	7	2406060	2406060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037283.1	+1	validated	p.S422R	1.000	247	0%	223	23.8%	86	44.1%	benign(0.014)	tolerated(0.2)	neutral(0.050)	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
CHST12	55501	genome.wustl.edu	37	7	2473508	2473508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018641.3	+1	validated	p.L412I	0.995	41	0%	73	17.8%	58	10.3%	possibly_damaging(0.896)	tolerated(0.15)	deleterious(0.595)	NULL
BRAT1	221927	genome.wustl.edu	37	7	2578095	2578095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152743.2	-1	provisional	p.L692M	0.089	51	0%	34	20.6%	69	18.8%	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	NULL
BRAT1	221927	genome.wustl.edu	37	7	2579491	2579491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152743.2	-1	provisional	p.R476M	0.013	130	0.8%	123	22%	60	38.3%	benign(0.427)	deleterious(0)	deleterious(0.584)	superfamily_ARM repeat
BRAT1	221927	genome.wustl.edu	37	7	2582872	2582872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152743.2	-1	provisional	p.P297S	0.809	59	0%	69	15.9%	69	33.3%	probably_damaging(0.998)	tolerated(0.25)	deleterious(0.511)	superfamily_ARM repeat
AMZ1	155185	genome.wustl.edu	37	7	2740225	2740225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133463.1	+1	provisional	p.A47V	1.000	35	0%	45	22.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
GNA12	2768	genome.wustl.edu	37	7	2771018	2771018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007353.2	-1	validated	p.P315S	0.997	162	0%	122	25.4%	13	23%	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_G-alpha,superfamily_SSF52540
GNA12	2768	genome.wustl.edu	37	7	2771196	2771196	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007353.2	-1	validated	p.S255	0.253	104	0%	55	25.5%	23	39.1%	-	-	-	HMMPfam_G-alpha,superfamily_SSF52540
CARD11	84433	genome.wustl.edu	37	7	2946435	2946435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032415.3	-1	validated	p.R1101H	0.858	46	0%	39	20.5%	28	0%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	superfamily_SSF52540
CARD11	84433	genome.wustl.edu	37	7	2959102	2959102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032415.3	-1	validated	p.D805G	1.000	97	0%	82	24.4%	19	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CARD11	84433	genome.wustl.edu	37	7	2976856	2976856	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032415.3	-1	validated	p.R386*	0.951	219	0.5%	231	14.3%	8	0%	-	-	-	NULL
SDK1	221935	genome.wustl.edu	37	7	4116650	4116650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152744.3	+1	validated	p.V1011M	1.000	298	0%	135	23.7%	4	100%	probably_damaging(0.98)	tolerated(0.08)	deleterious(0.724)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SDK1	221935	genome.wustl.edu	37	7	4150342	4150342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152744.3	+1	validated	p.E1124D	0.993	289	0.3%	260	23.1%	1	0%	benign(0.245)	tolerated(0.61)	neutral(0.029)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FOXK1	221937	genome.wustl.edu	37	7	4801880	4801880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037165.1	+1	validated	p.R663W	0.979	60	0%	39	20.5%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0415	9907	genome.wustl.edu	37	7	4820904	4820904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014855.1	+1	validated	p.R47M	1.000	72	0%	94	12.8%	17	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0415	9907	genome.wustl.edu	37	7	4830317	4830317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014855.1	+1	validated	p.G651D	1.000	80	0%	114	23.7%	47	23.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RBAK	57786	genome.wustl.edu	37	7	5104304	5104304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021163.3	+1	reviewed	p.C406Y	1.000	206	0%	120	25%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RBAK	57786	genome.wustl.edu	37	7	5105037	5105037	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021163.3	+1	reviewed	p.P650	1.000	368	0%	261	13%	1	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
WIPI2	26100	genome.wustl.edu	37	7	5266963	5266963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015610.3	+1	validated	p.C334Y	1.000	47	0%	55	12.7%	58	29.3%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMSmart_SM00320,superfamily_WD40 repeat-like
SLC29A4	222962	genome.wustl.edu	37	7	5330825	5330825	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040661.1	+1	reviewed	p.N124	0.995	87	0%	91	12.1%	1	100%	-	-	-	superfamily_MFS general substrate transporter
TNRC18	84629	genome.wustl.edu	37	7	5352492	5352492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080495.2	-1	provisional	p.S2677Y	1.000	23	0%	21	23.8%	68	36.7%	unknown(0)	deleterious(0)	-	NULL
TNRC18	84629	genome.wustl.edu	37	7	5364835	5364835	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000455076	-1	known	p.R112H	0.001	34	0%	48	31.2%	25	44%	-	-	-	NULL
TNRC18	84629	genome.wustl.edu	37	7	5401258	5401258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080495.2	-1	provisional	p.R1543H	1.000	39	0%	33	12.1%	19	42.1%	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	NULL
TNRC18	84629	genome.wustl.edu	37	7	5434163	5434163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080495.2	-1	provisional	p.S84N	0.978	50	0%	58	32.8%	5	40%	benign(0.359)	tolerated(0.12)	neutral(0.374)	NULL
FBXL18	80028	genome.wustl.edu	37	7	5521469	5521469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000297035	-1	known	p.P257S	1.000	60	0%	51	29.4%	2	50%	unknown(0)	-	-	NULL
FSCN1	6624	genome.wustl.edu	37	7	5643034	5643034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003088.2	+1	validated	p.A327T	0.988	29	0%	47	23.4%	85	38.8%	probably_damaging(0.99)	tolerated(0.08)	deleterious(0.742)	superfamily_Actin_crosslink,HMMPfam_Fascin
FSCN1	6624	genome.wustl.edu	37	7	5643504	5643504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003088.2	+1	validated	p.E374D	1.000	136	0.7%	101	16.8%	92	31.5%	benign(0.038)	tolerated(0.1)	neutral(0.288)	superfamily_Actin_crosslink,HMMPfam_Fascin
RNF216	54476	genome.wustl.edu	37	7	5780659	5780659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207111.2	-1	reviewed	p.G330E	0.745	178	0%	178	18.5%	14	35.7%	probably_damaging(1)	tolerated(0.78)	deleterious(0.501)	NULL
RSPH10B	222967	genome.wustl.edu	37	7	6006623	6006623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173565.3	-1	validated	p.P42L	0.008	599	0%	493	15.2%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
AIMP2	7965	genome.wustl.edu	37	7	6054835	6054835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006303.3	+1	validated	p.R65H	1.000	464	0%	347	20.5%	87	44.8%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
EIF2AK1	27102	genome.wustl.edu	37	7	6077087	6077087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014413.3	-1	reviewed	p.H434Y	1.000	649	0%	338	20.4%	79	39.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
USP42	84132	genome.wustl.edu	37	7	6189540	6189540	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032172.2	+1	validated	p.T571	0.000	238	0.4%	342	19.3%	11	45.4%	-	-	-	NULL
C7orf70	84792	genome.wustl.edu	37	7	6370338	6370338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037163.1	-1	validated	p.P150S	0.000	93	0%	72	16.7%	13	23%	probably_damaging(0.976)	tolerated(0.46)	neutral(0.430)	NULL
RAC1	5879	genome.wustl.edu	37	7	6441972	6441972	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018890.3	+1	reviewed	p.S177	0.001	186	0%	163	28.8%	620	35.9%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
DAGLB	221955	genome.wustl.edu	37	7	6449881	6449881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139179.3	-1	validated	p.T567M	0.130	102	0%	107	29.9%	18	38.8%	possibly_damaging(0.931)	deleterious(0.01)	deleterious(0.783)	NULL
DAGLB	221955	genome.wustl.edu	37	7	6456309	6456309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139179.3	-1	validated	p.A459V	0.373	68	0%	33	27.3%	20	25%	benign(0.344)	tolerated(0.27)	neutral(0.142)	HMMPfam_Lipase_3,superfamily_alpha/beta-Hydrolases
DAGLB	221955	genome.wustl.edu	37	7	6470138	6470138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139179.3	-1	validated	p.T301M	0.861	90	0%	100	26%	11	18.1%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	superfamily_alpha/beta-Hydrolases
DAGLB	221955	genome.wustl.edu	37	7	6485657	6485657	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139179.3	-1	validated	p.Y58*	1.000	202	0%	150	20.7%	5	0%	-	-	-	NULL
GRID2IP	392862	genome.wustl.edu	37	7	6554154	6554154	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145118.1	-1	validated	p.I425	0.037	197	0%	138	20.3%	0	-	-	-	-	NULL
ZNF853	54753	genome.wustl.edu	37	7	6661324	6661324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017560.1	+1	provisional	p.Q234H	0.000	221	0%	222	18.5%	15	53.3%	-	-	-	NULL
ENSG00000198580	0	genome.wustl.edu	37	7	6715817	6715817	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000401847	+1	known	p.V332	0.537	66	0%	53	11.3%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
CCZ1B	221960	genome.wustl.edu	37	7	6854457	6854457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198097.2	-1	predicted	p.D240N	1.000	473	0%	291	33.7%	53	30.1%	probably_damaging(0.988)	deleterious(0.05)	deleterious(0.783)	HMMPfam_DUF2049
ICA1	3382	genome.wustl.edu	37	7	8167670	8167670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004968.2	-1	reviewed	p.G388D	0.988	192	0%	110	23.6%	52	46.1%	benign(0.019)	tolerated(0.62)	neutral(0.005)	HMMPfam_ICA69
ICA1	3382	genome.wustl.edu	37	7	8272267	8272267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004968.2	-1	reviewed	p.D46N	1.000	514	0%	146	19.9%	32	37.5%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Arfaptin
LOC340268	340268	genome.wustl.edu	37	7	9766051	9766051	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_041608.1	+1	model	NULL	0.919	66	0%	112	16.1%	0	-	-	-	-	-
LOC340268	340268	genome.wustl.edu	37	7	9767148	9767148	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_041608.1	+1	model	NULL	1.000	77	0%	87	18.4%	0	-	-	-	-	-
PHF14	9678	genome.wustl.edu	37	7	11053398	11053398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000303905	+1	known	p.S357I	1.000	515	0%	279	21.5%	15	26.6%	possibly_damaging(0.643)	deleterious(0.04)	deleterious(0.575)	HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD
THSD7A	221981	genome.wustl.edu	37	7	11422171	11422171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015204.2	-1	validated	p.R1495M	1.000	395	0%	76	21.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
THSD7A	221981	genome.wustl.edu	37	7	11452283	11452283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015204.2	-1	validated	p.D1228Y	1.000	491	0%	205	14.1%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
THSD7A	221981	genome.wustl.edu	37	7	11464434	11464434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015204.2	-1	validated	p.H1091R	1.000	307	0%	183	23%	0	-	benign(0.003)	tolerated(0.36)	neutral(0.020)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
THSD7A	221981	genome.wustl.edu	37	7	11582609	11582609	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015204.2	-1	validated	p.N530T	1.000	374	0%	435	17.2%	1	0%	benign(0.042)	tolerated(0.38)	neutral(0.020)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
THSD7A	221981	genome.wustl.edu	37	7	11630185	11630185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015204.2	-1	validated	p.T452M	1.000	101	0%	44	18.2%	1	0%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
THSD7A	221981	genome.wustl.edu	37	7	11675780	11675780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015204.2	-1	validated	p.K333N	1.000	282	0%	361	11.4%	0	-	benign(0.328)	tolerated(0.26)	neutral(0.137)	NULL
THSD7A	221981	genome.wustl.edu	37	7	11675993	11675993	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015204.2	-1	validated	p.T262	0.005	235	0%	303	23.1%	0	-	-	-	-	NULL
TMEM106B	54664	genome.wustl.edu	37	7	12270056	12270056	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134232.1	+1	validated	p.S208	1.000	432	0%	204	30.4%	16	18.7%	-	-	-	HMMPfam_DUF1356
VWDE	221806	genome.wustl.edu	37	7	12412759	12412759	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135924.1	-1	provisional	p.C477	1.000	305	0%	130	20.8%	0	-	-	-	-	HMMSmart_SM00216
SCIN	85477	genome.wustl.edu	37	7	12644144	12644144	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001112706.2	+1	validated	p.I174M	1.000	513	0.4%	226	21.2%	6	16.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins
ETV1	2115	genome.wustl.edu	37	7	13971324	13971324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004956.4	-1	validated	p.T202M	0.554	361	0%	201	17.4%	11	45.4%	possibly_damaging(0.863)	tolerated(0.14)	deleterious(0.583)	HMMPfam_ETS_PEA3_N
ETV1	2115	genome.wustl.edu	37	7	13978819	13978819	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004956.4	-1	validated	p.C96W	0.997	401	0%	318	13.5%	8	37.5%	possibly_damaging(0.899)	deleterious(0.01)	deleterious(0.762)	HMMPfam_ETS_PEA3_N
DGKB	1607	genome.wustl.edu	37	7	14724886	14724886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004080.2	-1	reviewed	p.Q271H	1.000	150	0%	112	23.2%	0	-	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
AGMO	392636	genome.wustl.edu	37	7	15240967	15240967	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004320.1	-1	provisional	p.C427	0.016	340	0%	126	18.3%	0	-	-	-	-	NULL
MEOX2	4223	genome.wustl.edu	37	7	15666536	15666536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005924.4	-1	reviewed	p.Q175H	1.000	886	0%	235	23.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Homeodomain_like
SOSTDC1	25928	genome.wustl.edu	37	7	16502230	16502230	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015464.2	-1	reviewed	p.V188	0.672	478	0%	195	22.1%	52	59.6%	-	-	-	HMMPfam_Sclerostin
SOSTDC1	25928	genome.wustl.edu	37	7	16502399	16502399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015464.2	-1	reviewed	p.R132Q	1.000	211	0.5%	90	14.4%	49	4%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Sclerostin
SOSTDC1	25928	genome.wustl.edu	37	7	16502527	16502527	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015464.2	-1	reviewed	p.C89	1.000	76	0%	47	34%	34	41.1%	-	-	-	HMMPfam_Sclerostin
ANKMY2	57037	genome.wustl.edu	37	7	16649328	16649328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020319.2	-1	validated	p.S270N	1.000	334	0%	206	21.8%	19	31.5%	possibly_damaging(0.517)	deleterious(0.01)	deleterious(0.580)	NULL
SNX13	23161	genome.wustl.edu	37	7	17841276	17841276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015132.4	-1	reviewed	p.P745T	1.000	211	0%	155	23.9%	9	55.5%	benign(0.167)	tolerated(0.4)	neutral(0.031)	NULL
SNX13	23161	genome.wustl.edu	37	7	17874484	17874484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015132.4	-1	reviewed	p.S455F	1.000	163	0%	46	32.6%	4	25%	probably_damaging(0.986)	tolerated(0.08)	deleterious(0.734)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
PRPS1L1	221823	genome.wustl.edu	37	7	18067214	18067214	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175886.2	-1	reviewed	p.N64	0.986	635	0%	345	20%	0	-	-	-	-	NULL
MIR1302-6	100302140	genome.wustl.edu	37	7	18166887	18166887	+	RNA	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000408466	-1	known	NULL	0.023	511	0%	229	10.5%	0	-	-	-	-	-
HDAC9	9734	genome.wustl.edu	37	7	18630059	18630059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178425.2	+1	reviewed	p.R122H	1.000	312	0%	96	22.9%	0	-	probably_damaging(0.989)	tolerated(0.28)	deleterious(0.471)	NULL
TMEM196	256130	genome.wustl.edu	37	7	19812244	19812244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152774.3	-1	validated	p.V26M	1.000	39	0%	34	23.5%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
ITGB8	3696	genome.wustl.edu	37	7	20418754	20418754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002214.2	+1	reviewed	p.A157T	1.000	198	0%	180	25%	7	71.4%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like
ITGB8	3696	genome.wustl.edu	37	7	20418887	20418887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002214.2	+1	reviewed	p.S201I	1.000	303	0%	283	24%	7	71.4%	probably_damaging(0.996)	tolerated(0.25)	deleterious(0.498)	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like
ABCB5	340273	genome.wustl.edu	37	7	20687694	20687694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000404938	+1	known	p.S400Y	0.996	153	0.7%	75	29.3%	0	-	possibly_damaging(0.912)	deleterious(0)	deleterious(0.808)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB5	340273	genome.wustl.edu	37	7	20691197	20691197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178559.5	+1	validated	p.R51I	0.280	527	0%	202	22.8%	0	-	benign(0.007)	tolerated(0.07)	neutral(0.319)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB5	340273	genome.wustl.edu	37	7	20698224	20698224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178559.5	+1	validated	p.K99N	1.000	329	0%	213	20.7%	0	-	possibly_damaging(0.926)	deleterious(0.04)	deleterious(0.724)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SP4	6671	genome.wustl.edu	37	7	21516865	21516865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003112.3	+1	validated	p.P616H	1.000	311	0%	129	22.5%	0	-	possibly_damaging(0.791)	deleterious(0.04)	deleterious(0.645)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21627760	21627760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003777.3	+1	reviewed	p.H597Y	0.648	476	0.2%	108	24.1%	0	-	benign(0.038)	tolerated(0.16)	neutral(0.061)	HMMPfam_DHC_N1
DNAH11	8701	genome.wustl.edu	37	7	21655863	21655863	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003777.3	+1	reviewed	p.Q1350*	1.000	600	0%	185	22.2%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH11	8701	genome.wustl.edu	37	7	21675657	21675657	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003777.3	+1	reviewed	p.R1562*	1.000	449	0%	150	20%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH11	8701	genome.wustl.edu	37	7	21775300	21775300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003777.3	+1	reviewed	p.F2502V	1.000	385	0%	178	20.8%	0	-	possibly_damaging(0.46)	deleterious(0)	deleterious(0.596)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH11	8701	genome.wustl.edu	37	7	21781557	21781557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003777.3	+1	reviewed	p.V2650L	1.000	270	0%	123	22%	0	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH11	8701	genome.wustl.edu	37	7	21784598	21784598	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003777.3	+1	reviewed	p.T2816	0.000	297	0.3%	93	24.7%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
IL6	3569	genome.wustl.edu	37	7	22768376	22768376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000600.3	+1	reviewed	p.L92P	0.995	287	0%	244	21.7%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_IL6,HMMSmart_SM00126,superfamily_4-helical cytokines
NUPL2	11097	genome.wustl.edu	37	7	23224702	23224702	+	Silent	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007342.2	+1	validated	p.R45	0.107	113	0%	192	21.9%	12	33.3%	-	-	-	NULL
NUPL2	11097	genome.wustl.edu	37	7	23224878	23224878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007342.2	+1	validated	p.S104L	0.837	213	0%	227	25.6%	19	42.1%	possibly_damaging(0.49)	deleterious(0.03)	deleterious(0.527)	NULL
GPNMB	10457	genome.wustl.edu	37	7	23299747	23299747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000453162	+1	known	p.R185C	0.171	323	0%	156	23.1%	48	0%	-	-	-	NULL
IGF2BP3	10643	genome.wustl.edu	37	7	23358812	23358812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006547.2	-1	reviewed	p.G422D	1.000	301	0%	147	27.2%	16	56.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
TRA2A	29896	genome.wustl.edu	37	7	23545861	23545861	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013293.3	-1	reviewed	p.G222	0.105	215	0%	148	20.9%	49	44.8%	-	-	-	superfamily_RNA-binding domain RBD
MPP6	51678	genome.wustl.edu	37	7	24708165	24708165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016447.2	+1	provisional	p.P334S	1.000	366	0%	80	21.2%	4	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DFNA5	1687	genome.wustl.edu	37	7	24745850	24745850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127453.1	-1	reviewed	p.S379I	0.062	180	0%	132	25%	11	0%	possibly_damaging(0.765)	deleterious(0)	deleterious(0.728)	HMMPfam_Gasdermin
C7orf31	136895	genome.wustl.edu	37	7	25181891	25181891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138811.3	-1	validated	p.L307S	0.988	298	0%	178	19.7%	4	25%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
C7orf31	136895	genome.wustl.edu	37	7	25182309	25182309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138811.3	-1	validated	p.R270I	1.000	323	0%	124	25%	6	33.3%	probably_damaging(0.983)	tolerated(0.15)	deleterious(0.670)	NULL
NFE2L3	9603	genome.wustl.edu	37	7	26225050	26225050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004289.6	+1	reviewed	p.L578F	0.979	249	0%	140	17.1%	112	46.4%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMSmart_BRLZ,superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1
SKAP2	8935	genome.wustl.edu	37	7	26729958	26729958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003930.3	-1	reviewed	p.V274M	0.004	512	0%	163	23.3%	14	42.8%	possibly_damaging(0.522)	tolerated(0.1)	neutral(0.462)	superfamily_SH3-domain
HOXA1	3198	genome.wustl.edu	37	7	27134294	27134294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005522.4	-1	reviewed	p.R258H	1.000	189	0%	261	21.5%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
HOXA1	3198	genome.wustl.edu	37	7	27135352	27135352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005522.4	-1	reviewed	p.Q60H	1.000	18	0%	32	18.8%	0	-	possibly_damaging(0.83)	tolerated(0.07)	deleterious(0.635)	NULL
HOXA2	3199	genome.wustl.edu	37	7	27140448	27140448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006735.3	-1	reviewed	p.S343N	1.000	146	0%	175	25.7%	2	50%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
HOXA2	3199	genome.wustl.edu	37	7	27142034	27142034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006735.3	-1	reviewed	p.A29D	1.000	255	0%	272	14%	0	-	benign(0.025)	tolerated(0.07)	neutral(0.320)	NULL
HOXA3	3200	genome.wustl.edu	37	7	27148265	27148265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030661.4	-1	reviewed	p.A201T	1.000	97	0%	100	23%	2	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
HOXA6	3203	genome.wustl.edu	37	7	27185425	27185425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024014.2	-1	reviewed	p.R185H	1.000	247	0.4%	340	23.2%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
TAX1BP1	8887	genome.wustl.edu	37	7	27788285	27788285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006024.5	+1	validated	p.D48Y	1.000	246	0.4%	201	29.4%	69	39.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CALCOCO1
TAX1BP1	8887	genome.wustl.edu	37	7	27856094	27856094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006024.5	+1	validated	p.P631S	0.997	207	0%	89	19.1%	35	20%	benign(0.014)	tolerated(0.06)	neutral(0.323)	NULL
CREB5	9586	genome.wustl.edu	37	7	28858853	28858853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182898.2	+1	reviewed	p.S495I	1.000	237	0.4%	163	19.6%	0	-	unknown(0)	deleterious(0.02)	-	NULL
CHN2	1124	genome.wustl.edu	37	7	29407596	29407596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004067.2	+1	reviewed	p.P46H	1.000	372	0.3%	176	24.4%	3	0%	possibly_damaging(0.486)	tolerated(0.11)	neutral(0.433)	NULL
NOD1	10392	genome.wustl.edu	37	7	30477216	30477216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006092.2	-1	reviewed	p.R837Q	1.000	232	0%	240	22.9%	4	50%	possibly_damaging(0.923)	tolerated(0.19)	neutral(0.422)	superfamily_SSF52047
GARS	2617	genome.wustl.edu	37	7	30651737	30651737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002047.2	+1	reviewed	p.G303R	1.000	165	0%	216	11.6%	57	5.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_2b,superfamily_Class II aaRS and biotin synthetases
GARS	2617	genome.wustl.edu	37	7	30672005	30672005	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002047.2	+1	reviewed	p.H682	1.000	266	0%	134	27.6%	284	45.4%	-	-	-	HMMPfam_HGTP_anticodon,superfamily_Anticodon-binding domain of Class II aaRS
NEUROD6	63974	genome.wustl.edu	37	7	31377922	31377922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022728.2	-1	provisional	p.R321C	1.000	240	0%	262	22.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
NEUROD6	63974	genome.wustl.edu	37	7	31378474	31378474	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022728.2	-1	provisional	p.R137*	1.000	273	0%	425	21.9%	0	-	-	-	-	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
CCDC129	223075	genome.wustl.edu	37	7	31594131	31594131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194300.2	+1	validated	p.G69E	1.000	319	0%	176	17.6%	0	-	benign(0.023)	tolerated(1)	neutral(0.001)	NULL
CCDC129	223075	genome.wustl.edu	37	7	31618048	31618048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194300.2	+1	validated	p.E390D	1.000	59	0%	30	23.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CCDC129	223075	genome.wustl.edu	37	7	31682656	31682656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194300.2	+1	validated	p.A558T	0.000	152	0%	55	20%	0	-	benign(0.075)	tolerated(0.23)	neutral(0.046)	NULL
CCDC129	223075	genome.wustl.edu	37	7	31692241	31692241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194300.2	+1	validated	p.G978D	0.000	132	0%	32	28.1%	0	-	benign(0.328)	deleterious(0.02)	deleterious(0.486)	NULL
KBTBD2	25948	genome.wustl.edu	37	7	32909804	32909804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015483.2	-1	validated	p.T342I	1.000	1054	0%	274	25.9%	19	26.3%	benign(0.015)	tolerated(0.21)	neutral(0.044)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
FKBP9	11328	genome.wustl.edu	37	7	33014359	33014359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007270.3	+1	validated	p.G118R	1.000	228	0%	119	24.4%	19	5.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FKBP_C,superfamily_SSF54534
NT5C3	51251	genome.wustl.edu	37	7	33054347	33054347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002010.1	-1	reviewed	p.L336I	0.996	541	0%	351	14%	72	34.7%	possibly_damaging(0.817)	tolerated(0.24)	neutral(0.346)	HMMPfam_UMPH-1
BMPER	168667	genome.wustl.edu	37	7	34118477	34118477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133468.3	+1	validated	p.V363I	1.000	75	0%	126	19.8%	0	-	possibly_damaging(0.916)	tolerated(0.28)	neutral(0.398)	HMMSmart_VWD
BMPER	168667	genome.wustl.edu	37	7	34192851	34192851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133468.3	+1	validated	p.R675M	1.000	124	0%	53	20.8%	0	-	possibly_damaging(0.93)	deleterious(0.02)	deleterious(0.760)	superfamily_Cysrich_TIL,HMMPfam_TIL
NPSR1	387129	genome.wustl.edu	37	7	34851434	34851434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207173.1	+1	reviewed	p.R146I	1.000	372	0%	223	22.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
NPSR1	387129	genome.wustl.edu	37	7	34867038	34867038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000381544	+1	known	p.D134N	0.023	188	0%	55	10.9%	0	-	unknown(0)	-	-	NULL
DPY19L1	23333	genome.wustl.edu	37	7	35053194	35053194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015283.1	-1	validated	p.N106D	1.000	166	0%	136	22.8%	3	66.6%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_DUF2211
HERPUD2	64224	genome.wustl.edu	37	7	35673422	35673422	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022373.4	-1	validated	p.E367*	1.000	576	0%	237	26.2%	23	21.7%	-	-	-	NULL
SEPT7	989	genome.wustl.edu	37	7	35919531	35919531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001788.4	+1	reviewed	p.C204Y	1.000	212	0%	89	18%	92	42.3%	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
AOAH	313	genome.wustl.edu	37	7	36677463	36677463	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001637.3	-1	reviewed	p.P148	0.000	629	0%	212	23.1%	11	0%	-	-	-	NULL
TXNDC3	51314	genome.wustl.edu	37	7	37916495	37916495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016616.4	+1	reviewed	p.A294T	0.000	237	0%	69	27.5%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	superfamily_NDK
TXNDC3	51314	genome.wustl.edu	37	7	37923916	37923916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016616.4	+1	reviewed	p.R336C	0.001	533	0%	136	16.9%	0	-	possibly_damaging(0.501)	tolerated(0.05)	deleterious(0.513)	HMMSmart_NDK,superfamily_NDK
TARP	445347	genome.wustl.edu	37	7	38305264	38305264	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003799.1	-1	reviewed	p.Q2*	0.000	349	0%	119	27.7%	3	0%	benign(0.004)	deleterious(0.04)	neutral(0.349)	NULL
TRGV9	6983	genome.wustl.edu	37	7	38356853	38356853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000444775	-1	known	p.V44A	0.009	150	0%	168	28%	7	0%	possibly_damaging(0.583)	tolerated(0.53)	neutral(0.208)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
TRGV5	6978	genome.wustl.edu	37	7	38389192	38389192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390344	-1	known	p.T40A	0.000	329	0%	120	18.3%	0	-	possibly_damaging(0.902)	tolerated(0.46)	neutral(0.369)	HMMPfam_V-set,superfamily_Immunoglobulin
VPS41	27072	genome.wustl.edu	37	7	38791798	38791798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014396.3	-1	reviewed	p.S635I	1.000	481	0%	307	13%	16	37.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
CDK13	8621	genome.wustl.edu	37	7	40117669	40117669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003718.4	+1	reviewed	p.T949I	1.000	609	0%	196	32.1%	12	75%	possibly_damaging(0.922)	deleterious(0.05)	deleterious(0.717)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
INHBA	3624	genome.wustl.edu	37	7	41730062	41730062	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002192.2	-1	reviewed	p.W156*	1.000	145	0%	107	15.9%	1	0%	-	-	-	HMMPfam_TGFb_propeptide
GLI3	2737	genome.wustl.edu	37	7	42005096	42005096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000168.5	-1	reviewed	p.G1192V	1.000	58	0%	71	31%	1	0%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
GLI3	2737	genome.wustl.edu	37	7	42007393	42007393	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000168.5	-1	reviewed	p.I744	0.044	530	0.8%	597	23.5%	2	0%	-	-	-	NULL
MRPL32	64983	genome.wustl.edu	37	7	42976966	42976966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031903.2	+1	reviewed	p.H120Y	0.998	341	0%	159	25.8%	163	35.5%	benign(0.004)	tolerated(0.12)	neutral(0.261)	NULL
HECW1	23072	genome.wustl.edu	37	7	43477705	43477705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015052.3	+1	validated	p.S302L	1.000	180	0%	171	9.9%	0	-	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
HECW1	23072	genome.wustl.edu	37	7	43594325	43594325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015052.3	+1	validated	p.R1549C	1.000	133	0%	107	22.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
STK17A	9263	genome.wustl.edu	37	7	43635616	43635616	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004760.2	+1	reviewed	p.E108A	1.000	337	0%	191	13.1%	23	8.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
BLVRA	644	genome.wustl.edu	37	7	43840105	43840105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000712.3	+1	validated	p.E132K	1.000	255	0%	61	21.3%	54	9.2%	possibly_damaging(0.88)	tolerated(0.18)	neutral(0.399)	HMMPfam_Biliv-reduc_cat,superfamily_NAD(P)-bd,superfamily_SSF55347
URGCP	55665	genome.wustl.edu	37	7	43917785	43917785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077663.1	-1	validated	p.S426I	0.972	166	0%	140	22.9%	15	53.3%	benign(0.317)	deleterious(0.04)	neutral(0.448)	NULL
DBNL	28988	genome.wustl.edu	37	7	44099001	44099001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122956.1	+1	validated	p.T304I	0.000	80	0%	63	25.4%	106	26.4%	benign(0.007)	tolerated(0.22)	neutral(0.042)	NULL
PGAM2	5224	genome.wustl.edu	37	7	44104827	44104827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000290.3	-1	reviewed	p.A101V	1.000	106	0%	100	27%	2	50%	possibly_damaging(0.605)	deleterious(0)	deleterious(0.654)	HMMPfam_PGAM,superfamily_SSF53254
AEBP1	165	genome.wustl.edu	37	7	44147429	44147429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001129.3	+1	reviewed	p.K254R	1.000	30	0%	51	25.5%	11	0%	possibly_damaging(0.484)	deleterious(0.02)	deleterious(0.543)	NULL
AEBP1	165	genome.wustl.edu	37	7	44151512	44151512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001129.3	+1	reviewed	p.L634M	1.000	103	0%	138	24.6%	39	0%	probably_damaging(0.958)	tolerated(0.1)	deleterious(0.688)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases
AEBP1	165	genome.wustl.edu	37	7	44153705	44153705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001129.3	+1	reviewed	p.E1108K	0.013	486	0%	444	23.2%	86	1.1%	unknown(0)	deleterious(0)	-	NULL
POLD2	5425	genome.wustl.edu	37	7	44154524	44154524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127218.1	-1	validated	p.L424M	1.000	62	0%	77	18.2%	344	43.6%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	NULL
GCK	2645	genome.wustl.edu	37	7	44189604	44189604	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033507.1	-1	reviewed	p.V182	0.835	227	0%	200	16%	0	-	-	-	-	HMMPfam_Hexokinase_1,superfamily_SSF53067
YKT6	10652	genome.wustl.edu	37	7	44247029	44247029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006555.3	+1	reviewed	p.P111S	1.000	169	0%	159	20.1%	52	30.7%	benign(0.015)	tolerated(0.6)	neutral(0.005)	HMMPfam_Synaptobrevin,superfamily_SNARE-like
OGDH	4967	genome.wustl.edu	37	7	44721381	44721381	+	Silent	SNP	C	C	A	rs61756132		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002541.3	+1	reviewed	p.T423	0.923	425	0%	182	13.7%	53	16.9%	-	-	-	HMMPfam_E1_dh,superfamily_SSF52518
OGDH	4967	genome.wustl.edu	37	7	44736085	44736085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002541.3	+1	reviewed	p.T610M	0.001	288	0%	184	26.1%	28	25%	benign(0.298)	tolerated(0.07)	neutral(0.411)	NULL
MYO1G	64005	genome.wustl.edu	37	7	45016199	45016199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033054.2	-1	validated	p.A121V	1.000	195	0%	209	19.1%	7	0%	probably_damaging(0.968)	tolerated(0.06)	deleterious(0.732)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1G	64005	genome.wustl.edu	37	7	45018481	45018481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033054.2	-1	validated	p.R27M	1.000	188	0%	181	17.7%	4	0%	benign(0.004)	deleterious(0.01)	neutral(0.406)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
NACAD	23148	genome.wustl.edu	37	7	45122598	45122598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000258775	-1	known	p.G1061C	0.012	48	0%	66	19.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NACAD	23148	genome.wustl.edu	37	7	45122752	45122752	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000490531	-1	known	p.L1005R	0.000	31	0%	67	14.9%	2	0%	-	-	-	NULL
NACAD	23148	genome.wustl.edu	37	7	45124555	45124555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000258775	-1	known	p.E408D	1.000	44	0%	69	20.3%	2	0%	possibly_damaging(0.741)	deleterious(0)	deleterious(0.716)	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47851554	47851554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138295.2	-1	reviewed	p.P2481H	0.996	134	0%	125	10.4%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PKD_channel
C7orf69	80099	genome.wustl.edu	37	7	47857657	47857657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025031.2	+1	validated	p.L48F	0.000	536	0%	508	23.4%	0	-	unknown(0)	-	-	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47870947	47870947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138295.2	-1	reviewed	p.P2114L	0.013	86	0%	52	32.7%	0	-	probably_damaging(0.978)	tolerated(0.08)	deleterious(0.720)	NULL
HUS1	3364	genome.wustl.edu	37	7	48016376	48016376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004507.2	-1	reviewed	p.P139H	0.998	274	0%	384	21.4%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hus1
UPP1	7378	genome.wustl.edu	37	7	48147072	48147072	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003364.2	+1	validated	p.F254Y	1.000	63	0%	63	27%	82	36.5%	possibly_damaging(0.816)	deleterious(0)	deleterious(0.753)	HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases
ABCA13	154664	genome.wustl.edu	37	7	48237861	48237861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152701.3	+1	reviewed	p.S64I	0.993	441	0%	520	21.3%	0	-	probably_damaging(0.991)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48237898	48237898	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152701.3	+1	reviewed	p.C76	1.000	421	0%	465	24.1%	0	-	-	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48285602	48285602	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152701.3	+1	reviewed	p.K545T	0.016	254	0%	86	23.3%	0	-	possibly_damaging(0.647)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48311451	48311451	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152701.3	+1	reviewed	p.M730V	0.000	210	0%	115	10.4%	0	-	benign(0)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48313001	48313001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152701.3	+1	reviewed	p.K1246N	0.033	144	0%	40	22.5%	0	-	probably_damaging(0.978)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48413990	48413990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152701.3	+1	reviewed	p.T3727I	1.000	447	0%	138	18.8%	1	0%	probably_damaging(1)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48619943	48619943	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000453246	+1	known	p.R1092W	0.117	208	0%	70	20%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
C7orf72	100130988	genome.wustl.edu	37	7	50173814	50173814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000297001	+1	known	p.R280I	1.000	151	0%	54	16.7%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
IKZF1	10320	genome.wustl.edu	37	7	50455117	50455117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000331340	+1	known	p.R222C	1.000	69	0%	66	24.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FIGNL1	63979	genome.wustl.edu	37	7	50514297	50514297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042762.1	-1	validated	p.S230I	0.002	122	0.8%	146	21.2%	2	100%	benign(0.086)	tolerated(0.09)	neutral(0.303)	NULL
DDC	1644	genome.wustl.edu	37	7	50566934	50566934	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000790.3	-1	reviewed	p.K263M	0.854	79	0%	45	24.4%	1	0%	possibly_damaging(0.88)	deleterious(0.01)	deleterious(0.749)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
GRB10	2887	genome.wustl.edu	37	7	50660735	50660735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005311.4	-1	reviewed	p.L567M	1.000	227	0.4%	122	32%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
GRB10	2887	genome.wustl.edu	37	7	50663213	50663213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005311.4	-1	reviewed	p.R520H	1.000	275	0%	172	20.3%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
GRB10	2887	genome.wustl.edu	37	7	50672037	50672037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005311.4	-1	reviewed	p.S476I	1.000	302	0%	195	14.4%	4	0%	benign(0.052)	deleterious(0.01)	neutral(0.409)	superfamily_SH2 domain
GRB10	2887	genome.wustl.edu	37	7	50672047	50672047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005311.4	-1	reviewed	p.G473C	0.857	298	0%	199	25.1%	3	33.3%	possibly_damaging(0.754)	deleterious(0.03)	deleterious(0.643)	superfamily_SH2 domain
GRB10	2887	genome.wustl.edu	37	7	50673052	50673052	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005311.4	-1	reviewed	p.G442*	1.000	196	0%	139	19.4%	5	0%	-	-	-	HMMPfam_BPS
GRB10	2887	genome.wustl.edu	37	7	50682506	50682506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005311.4	-1	reviewed	p.K352N	1.000	162	0%	147	18.4%	4	75%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
GRB10	2887	genome.wustl.edu	37	7	50737551	50737551	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005311.4	-1	reviewed	p.Q124	0.997	66	0%	49	12.2%	4	50%	-	-	-	NULL
COBL	23242	genome.wustl.edu	37	7	51203952	51203952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015198.3	-1	validated	p.S287I	1.000	163	0%	82	22%	10	50%	benign(0.121)	tolerated(0.37)	neutral(0.028)	HMMPfam_Cobl
COBL	23242	genome.wustl.edu	37	7	51261160	51261160	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000452534	-1	known	p.W43R	0.981	455	0%	225	19.6%	5	60%	-	-	-	HMMPfam_Cobl
POM121L12	285877	genome.wustl.edu	37	7	53103476	53103476	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182595.3	+1	validated	p.S38R	0.000	9	0.000	17	0.294	0	-	benign(0.418)	tolerated(0.2)	neutral(0.184)	NULL
EGFR	1956	genome.wustl.edu	37	7	55219021	55219021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005228.3	+1	reviewed	p.S198R	1.000	279	0%	285	20%	1	100%	probably_damaging(0.976)	tolerated(1)	neutral(0.418)	HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_L domain-like
EGFR	1956	genome.wustl.edu	37	7	55229314	55229314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005228.3	+1	reviewed	p.L541I	0.010	141	0%	129	27.9%	2	50%	benign(0)	tolerated(0.66)	neutral(0.003)	HMMSmart_SM00261,superfamily_Growth factor receptor domain
EGFR	1956	genome.wustl.edu	37	7	55231465	55231465	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005228.3	+1	reviewed	p.Q557	1.000	194	0%	144	15.3%	2	50%	-	-	-	HMMSmart_SM00261,superfamily_Growth factor receptor domain
EGFR	1956	genome.wustl.edu	37	7	55273176	55273176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005228.3	+1	reviewed	p.L1167M	1.000	148	0%	102	14.7%	7	0%	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	NULL
VOPP1	81552	genome.wustl.edu	37	7	55588790	55588790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030796.3	-1	validated	p.E30K	1.000	315	0%	190	21.1%	14	0%	benign(0.35)	deleterious(0)	deleterious(0.555)	NULL
SEPT14	346288	genome.wustl.edu	37	7	55886883	55886883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207366.2	-1	validated	p.D252Y	0.564	327	0%	202	10.9%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
GBAS	2631	genome.wustl.edu	37	7	56065085	56065085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001483.1	+1	reviewed	p.D247Y	1.000	561	0%	235	12.8%	67	17.9%	benign(0.422)	deleterious(0)	deleterious(0.582)	HMMPfam_NIPSNAP
SUMF2	25870	genome.wustl.edu	37	7	56136261	56136261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130069.1	+1	reviewed	p.G71W	0.988	209	0%	184	17.4%	97	42.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DUF323
PHKG1	5260	genome.wustl.edu	37	7	56154686	56154686	+	Silent	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006213.3	-1	reviewed	p.T98	1.000	335	0.3%	230	24.3%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PHKG1	5260	genome.wustl.edu	37	7	56156613	56156613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006213.3	-1	reviewed	p.P8S	1.000	233	0%	187	27.3%	1	0%	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	NULL
LOC100130849	100130849	genome.wustl.edu	37	7	56945170	56945170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001719090.1	-1	model	p.V82I	1.000	25	0%	28	25%	0	-	-	-	-	NULL
ZNF479	90827	genome.wustl.edu	37	7	57188750	57188750	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033273.1	-1	provisional	p.Q124	0.001	486	0%	145	8.3%	0	-	-	-	-	NULL
ZNF716	441234	genome.wustl.edu	37	7	57522226	57522226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342727.1	+1	model	p.D34N	0.005	547	0%	224	23.2%	0	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF107	51427	genome.wustl.edu	37	7	64168730	64168730	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013746.1	+1	validated	p.K683T	0.996	88	0%	77	15.6%	3	0%	probably_damaging(1)	tolerated(0.4)	deleterious(0.516)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF273	10793	genome.wustl.edu	37	7	64389319	64389319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021148.2	+1	reviewed	p.G538E	0.996	256	0.4%	187	20.3%	4	25%	benign(0.004)	deleterious(0.02)	neutral(0.383)	superfamily_C2H2 and C2HC zinc fingers
ZNF117	51351	genome.wustl.edu	37	7	64439793	64439793	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015852.3	-1	validated	p.G52	0.001	311	0%	190	23.7%	2	0%	-	-	-	NULL
ERV3-1	2086	genome.wustl.edu	37	7	64452628	64452628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007253.3	-1	reviewed	p.E259D	0.844	174	0.6%	74	10.8%	3	33.3%	possibly_damaging(0.741)	deleterious(0)	deleterious(0.716)	NULL
ERV3-1	2086	genome.wustl.edu	37	7	64452809	64452809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007253.3	-1	reviewed	p.S199Y	0.578	282	0%	132	25%	1	0%	possibly_damaging(0.578)	deleterious(0.04)	deleterious(0.547)	NULL
VKORC1L1	154807	genome.wustl.edu	37	7	65419147	65419147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173517.3	+1	validated	p.L131M	1.000	222	0%	136	25.7%	57	61.4%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	HMMPfam_VKOR,HMMSmart_VKc
ASL	435	genome.wustl.edu	37	7	65557062	65557062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000048.3	+1	reviewed	p.V378I	1.000	100	0%	116	34.5%	66	60.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L-Aspartase-like
TPST1	8460	genome.wustl.edu	37	7	65705531	65705531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003596.3	+1	validated	p.Q40R	0.987	179	0%	88	11.4%	11	18.1%	benign(0.055)	tolerated(0.68)	neutral(0.005)	NULL
TYW1	55253	genome.wustl.edu	37	7	66563552	66563552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018264.2	+1	validated	p.R470H	1.000	466	0%	129	24.8%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes
TYW1	55253	genome.wustl.edu	37	7	66703338	66703338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018264.2	+1	validated	p.R674H	1.000	647	0%	262	17.6%	9	44.4%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
LOC442572	442572	genome.wustl.edu	37	7	66747628	66747628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_499314.5	+1	model	p.P206H	0.254	468	0.2%	311	6.4%	0	-	-	-	-	NULL
AUTS2	26053	genome.wustl.edu	37	7	69364327	69364327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015570.2	+1	validated	p.T122I	0.995	218	0%	66	27.3%	1	0%	benign(0.235)	tolerated(0.43)	neutral(0.037)	NULL
POM121	9883	genome.wustl.edu	37	7	72411388	72411388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172020.1	+1	reviewed	p.P302S	0.009	731	0.1%	584	16.3%	5	20%	probably_damaging(0.994)	tolerated(0.26)	deleterious(0.486)	NULL
POM121	9883	genome.wustl.edu	37	7	72412874	72412874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172020.1	+1	reviewed	p.P516H	0.004	438	0%	364	11.5%	14	35.7%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	NULL
POM121	9883	genome.wustl.edu	37	7	72413338	72413338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172020.1	+1	reviewed	p.P671S	0.041	216	0%	204	12.3%	6	0%	possibly_damaging(0.948)	tolerated(0.25)	neutral(0.428)	NULL
TRIM74	378108	genome.wustl.edu	37	7	72436426	72436426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198853.1	-1	provisional	p.V88A	0.713	149	0%	185	14.6%	3	33.3%	possibly_damaging(0.793)	deleterious(0.03)	deleterious(0.662)	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_RING/U-box
FKBP6	8468	genome.wustl.edu	37	7	72743470	72743470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000445032	+1	known	p.A95T	0.000	830	0%	730	24.4%	0	-	unknown(0)	-	-	NULL
BAZ1B	9031	genome.wustl.edu	37	7	72873950	72873950	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032408.3	-1	validated	p.K1116	0.996	811	0%	391	22.8%	33	42.4%	-	-	-	NULL
BAZ1B	9031	genome.wustl.edu	37	7	72891815	72891815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032408.3	-1	validated	p.L659S	0.986	349	0%	201	21.9%	19	36.8%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMSmart_SM00571
BAZ1B	9031	genome.wustl.edu	37	7	72903603	72903603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032408.3	-1	validated	p.P271H	1.000	451	0.2%	195	22.1%	18	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MLXIPL	51085	genome.wustl.edu	37	7	73010180	73010180	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032951.2	-1	reviewed	p.A726	0.009	79	0%	79	17.7%	12	8.3%	-	-	-	superfamily_HLH helix-loop-helix DNA-binding domain
ABHD11	83451	genome.wustl.edu	37	7	73152336	73152336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145363.1	-1	validated	p.P142H	0.000	117	0%	135	23%	3	66.6%	-	-	-	NULL
WBSCR27	155368	genome.wustl.edu	37	7	73256419	73256419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152559.2	-1	reviewed	p.A18T	0.048	52	0%	40	22.5%	11	45.4%	benign(0.001)	tolerated(0.69)	neutral(0.002)	NULL
ELN	2006	genome.wustl.edu	37	7	73456975	73456975	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000501.2	+1	reviewed	p.P88	0.005	101	0%	78	28.2%	3	0%	-	-	-	NULL
CLIP2	7461	genome.wustl.edu	37	7	73790748	73790748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003388.4	+1	reviewed	p.L673M	0.994	41	0%	37	18.9%	7	28.5%	benign(0.175)	deleterious(0.05)	neutral(0.361)	NULL
CLIP2	7461	genome.wustl.edu	37	7	73791029	73791029	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000493166	+1	known	p.T2M	0.993	41	0%	32	34.4%	13	30.7%	-	-	-	NULL
CLIP2	7461	genome.wustl.edu	37	7	73791041	73791041	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000493166	+1	known	p.S6N	1.000	38	0%	31	16.1%	12	41.6%	-	-	-	NULL
GTF2IRD1	9569	genome.wustl.edu	37	7	73922473	73922473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016328.1	+1	reviewed	p.N21K	0.003	35	0%	55	21.8%	16	25%	benign(0.013)	tolerated(0.19)	neutral(0.050)	NULL
GTF2IRD1	9569	genome.wustl.edu	37	7	73933848	73933848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016328.1	+1	reviewed	p.V239M	0.675	55	0%	48	35.4%	30	50%	benign(0.345)	tolerated(0.06)	neutral(0.431)	NULL
GTF2IRD1	9569	genome.wustl.edu	37	7	74005275	74005275	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000470715	+1	known	p.R218*	0.342	86	0%	68	22.1%	70	50%	-	-	-	HMMPfam_GTF2I
GTF2I	2969	genome.wustl.edu	37	7	74105401	74105401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032999.2	+1	reviewed	p.V66I	1.000	340	0%	188	23.4%	47	31.9%	possibly_damaging(0.476)	deleterious(0.05)	deleterious(0.502)	NULL
GTF2I	2969	genome.wustl.edu	37	7	74105415	74105415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032999.2	+1	reviewed	p.K70N	0.998	324	0%	168	18.5%	39	53.8%	benign(0.313)	deleterious(0.01)	deleterious(0.503)	NULL
GTF2IRD2	84163	genome.wustl.edu	37	7	74211961	74211961	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173537.2	-1	validated	p.G630	0.058	225	0%	160	20%	3	33.3%	-	-	-	NULL
GTF2IRD2	84163	genome.wustl.edu	37	7	74212342	74212342	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173537.2	-1	validated	p.T503	0.004	291	0%	186	34.9%	1	100%	-	-	-	NULL
GTF2IRD2B	389524	genome.wustl.edu	37	7	74524810	74524810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003795.2	+1	reviewed	p.E18D	0.993	653	0.2%	477	13.8%	8	25%	benign(0.004)	tolerated(0.46)	neutral(0.012)	NULL
GTF2IRD2B	389524	genome.wustl.edu	37	7	74564503	74564503	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003795.2	+1	reviewed	p.I750	0.948	486	0%	298	13.4%	8	37.5%	-	-	-	NULL
HIP1	3092	genome.wustl.edu	37	7	75183439	75183439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005338.4	-1	reviewed	p.L711I	1.000	140	0%	139	20.9%	17	41.1%	benign(0.418)	deleterious(0.04)	deleterious(0.484)	NULL
HIP1	3092	genome.wustl.edu	37	7	75197530	75197530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005338.4	-1	reviewed	p.R259Q	1.000	343	0%	288	21.2%	10	70%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANTH,superfamily_ARM repeat
CCL24	6369	genome.wustl.edu	37	7	75442700	75442700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002991.2	-1	reviewed	p.S39P	0.165	130	0%	58	17.2%	1	0%	benign(0.016)	deleterious(0.01)	neutral(0.406)	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8
POR	5447	genome.wustl.edu	37	7	75615356	75615356	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000447222	+1	known	p.R646C	1.000	62	0%	41	24.4%	242	45.8%	-	-	-	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
POR	5447	genome.wustl.edu	37	7	75615476	75615476	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000941.2	+1	reviewed	e14-1	1.000	110	0%	100	25%	7	100%	-	-	-	-
STYXL1	51657	genome.wustl.edu	37	7	75659772	75659772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016086.2	-1	validated	p.R24G	1.000	561	0%	268	22.8%	54	46.2%	probably_damaging(0.996)	tolerated(0.59)	neutral(0.466)	HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
MDH2	4191	genome.wustl.edu	37	7	75694218	75694218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005918.2	+1	reviewed	p.V278I	1.000	258	0.4%	202	25.7%	676	40.3%	benign(0.152)	tolerated(0.06)	neutral(0.336)	HMMPfam_Ldh_1_C,superfamily_Lactate_DH/Glyco_hydro_4_C
DTX2	113878	genome.wustl.edu	37	7	76134824	76134824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102594.1	+1	validated	p.T592M	0.970	103	0%	88	21.6%	47	34%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC146	57639	genome.wustl.edu	37	7	76908093	76908093	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020879.2	+1	validated	p.E489*	0.998	396	0%	124	16.1%	4	0%	-	-	-	NULL
PION	54103	genome.wustl.edu	37	7	76984623	76984623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017439.3	-1	validated	p.Q415H	0.320	135	0%	45	24.4%	3	0%	benign(0.002)	tolerated(0.11)	neutral(0.272)	NULL
PTPN12	5782	genome.wustl.edu	37	7	77265139	77265139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002835.3	+1	reviewed	p.Q705H	0.982	202	0%	80	12.5%	54	44.4%	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	NULL
PHTF2	57157	genome.wustl.edu	37	7	77558579	77558579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127357.1	+1	validated	p.D391Y	1.000	487	0.2%	185	25.9%	7	42.8%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
PHTF2	57157	genome.wustl.edu	37	7	77572076	77572076	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127357.1	+1	validated	p.I610	0.994	520	0%	548	19.5%	6	50%	-	-	-	NULL
PHTF2	57157	genome.wustl.edu	37	7	77579094	77579094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127357.1	+1	validated	p.L653I	1.000	514	0.2%	268	20.9%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MAGI2	9863	genome.wustl.edu	37	7	77756682	77756682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012301.3	-1	reviewed	p.Q1085H	1.000	262	0%	197	29.9%	0	-	benign(0.006)	tolerated(0.08)	neutral(0.300)	NULL
MAGI2	9863	genome.wustl.edu	37	7	77764507	77764507	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012301.3	-1	reviewed	p.I954	0.065	207	0.5%	152	27.6%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MAGI2	9863	genome.wustl.edu	37	7	77824258	77824258	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012301.3	-1	reviewed	p.A734	1.000	472	0%	195	11.8%	0	-	-	-	-	NULL
MAGI2	9863	genome.wustl.edu	37	7	78150809	78150809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012301.3	-1	reviewed	p.P231H	1.000	446	0.2%	231	24.7%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMSmart_SM00072
GNAT3	346562	genome.wustl.edu	37	7	80088031	80088031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102386.1	-1	provisional	p.D341Y	1.000	348	0%	98	16.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
SEMA3C	10512	genome.wustl.edu	37	7	80374221	80374221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006379.2	-1	validated	p.P749T	1.000	245	0%	89	20.2%	9	11.1%	possibly_damaging(0.863)	deleterious(0.01)	deleterious(0.739)	NULL
PCLO	27445	genome.wustl.edu	37	7	82545767	82545767	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000426442	-1	known	p.P123L	0.948	758	0%	255	20.8%	0	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82583827	82583827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033026.5	-1	validated	p.D2148N	0.993	315	0%	139	21.6%	0	-	probably_damaging(0.995)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82764109	82764109	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033026.5	-1	validated	p.Q919	1.000	159	0%	200	26%	1	100%	-	-	-	NULL
SEMA3D	223117	genome.wustl.edu	37	7	84647580	84647580	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152754.2	-1	validated	p.L511	0.999	169	0%	41	22%	0	-	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SEMA3D	223117	genome.wustl.edu	37	7	84727282	84727282	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152754.2	-1	validated	e2-1	1.000	113	0%	69	24.6%	0	-	-	-	-	-
GRM3	2913	genome.wustl.edu	37	7	86394844	86394844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000840.2	+1	reviewed	p.P128L	1.000	272	0%	69	20.3%	0	-	benign(0.079)	tolerated(0.17)	neutral(0.065)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
KIAA1324L	222223	genome.wustl.edu	37	7	86541449	86541449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142749.2	-1	validated	p.S703I	1.000	216	0%	45	28.9%	5	100%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	superfamily_Mannose 6-phosphate receptor domain
KIAA1324L	222223	genome.wustl.edu	37	7	86577218	86577218	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142749.2	-1	validated	p.E111*	1.000	248	0%	152	23%	2	0%	-	-	-	superfamily_Growth factor receptor domain
CROT	54677	genome.wustl.edu	37	7	87022269	87022269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143935.1	+1	reviewed	p.G563V	1.000	464	0.4%	136	25%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
ABCB4	5244	genome.wustl.edu	37	7	87041219	87041219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018849.2	-1	reviewed	p.D972Y	0.991	119	0%	63	20.6%	0	-	benign(0.296)	tolerated(0.71)	neutral(0.093)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB4	5244	genome.wustl.edu	37	7	87047862	87047862	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018849.2	-1	reviewed	p.Q823H	1.000	271	0%	55	23.6%	1	0%	benign(0.006)	tolerated(0.07)	neutral(0.319)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB4	5244	genome.wustl.edu	37	7	87053309	87053309	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018849.2	-1	reviewed	p.W708*	1.000	300	0%	113	15.9%	0	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87178786	87178786	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000927.3	-1	reviewed	p.Q535*	1.000	233	0%	141	19.9%	3	0%	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB1	5243	genome.wustl.edu	37	7	87183158	87183158	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000927.3	-1	reviewed	p.I306	1.000	532	0.2%	257	21.4%	3	0%	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87190600	87190600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000927.3	-1	reviewed	p.G269E	1.000	320	0%	144	11.1%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
RUNDC3B	154661	genome.wustl.edu	37	7	87339910	87339910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138290.2	+1	validated	p.L150F	1.000	84	0%	64	18.8%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_RUN,HMMSmart_SM00593
DBF4	10926	genome.wustl.edu	37	7	87514369	87514369	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006716.3	+1	validated	p.L99	0.763	183	0%	180	22.8%	10	50%	-	-	-	NULL
DBF4	10926	genome.wustl.edu	37	7	87514429	87514429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006716.3	+1	validated	p.P119S	1.000	205	0%	178	15.2%	7	14.2%	possibly_damaging(0.731)	tolerated(0.13)	deleterious(0.520)	NULL
DBF4	10926	genome.wustl.edu	37	7	87516682	87516682	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006716.3	+1	validated	p.L163	1.000	313	0%	359	20.6%	7	42.8%	-	-	-	NULL
STEAP4	79689	genome.wustl.edu	37	7	87912378	87912378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024636.2	-1	validated	p.E188*	1.000	220	0%	74	20.3%	0	-	-	-	-	HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains
C7orf62	219557	genome.wustl.edu	37	7	88424061	88424061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152706.2	-1	predicted	p.A66T	0.000	267	0%	59	15.3%	0	-	benign(0.006)	tolerated(0.53)	neutral(0.007)	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88847528	88847528	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181646.2	+1	provisional	p.Y56	1.000	288	0%	278	24.1%	0	-	-	-	-	HMMSmart_ZnF_C2H2
ZNF804B	219578	genome.wustl.edu	37	7	88964446	88964446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181646.2	+1	provisional	p.S717I	0.002	222	0%	134	24.6%	0	-	benign(0.015)	deleterious(0.04)	neutral(0.349)	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88965417	88965417	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181646.2	+1	provisional	p.N1041H	1.000	209	0%	103	21.4%	0	-	possibly_damaging(0.69)	deleterious(0.05)	deleterious(0.593)	NULL
MTERF	7978	genome.wustl.edu	37	7	91503069	91503069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006980.3	-1	validated	p.E347K	1.000	300	0.3%	181	26.5%	6	33.3%	benign(0.004)	tolerated(0.14)	neutral(0.249)	HMMPfam_mTERF,HMMSmart_SM00733
MTERF	7978	genome.wustl.edu	37	7	91503097	91503097	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006980.3	-1	validated	p.E337D	0.998	285	0%	163	14.1%	6	50%	benign(0.003)	tolerated(0.39)	neutral(0.016)	HMMPfam_mTERF,HMMSmart_SM00733
AKAP9	10142	genome.wustl.edu	37	7	91645451	91645451	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005751.4	+1	reviewed	p.C1207	0.900	319	0%	286	17.1%	1	100%	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91671364	91671364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005751.4	+1	reviewed	p.S1641F	1.000	255	0%	133	22.6%	3	0%	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	NULL
CYP51A1	1595	genome.wustl.edu	37	7	91755649	91755649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000786.3	-1	reviewed	p.A230T	1.000	224	0%	230	12.6%	14	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
ERVW-1	30816	genome.wustl.edu	37	7	92098739	92098739	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014590.3	-1	reviewed	p.P319	0.186	545	0%	343	19%	0	-	-	-	-	HMMPfam_TLV_coat
PEX1	5189	genome.wustl.edu	37	7	92120649	92120649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000466.2	-1	reviewed	p.M1125I	1.000	343	0%	140	22.1%	28	57.1%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92731807	92731807	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017654.2	-1	validated	p.E1202*	1.000	309	0%	227	21.1%	10	30%	-	-	-	NULL
SAMD9	54809	genome.wustl.edu	37	7	92733358	92733358	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017654.2	-1	validated	p.R685*	0.994	326	0%	176	18.2%	5	20%	-	-	-	NULL
SAMD9	54809	genome.wustl.edu	37	7	92735110	92735110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017654.2	-1	validated	p.V101M	0.000	672	0%	586	23.7%	3	0%	possibly_damaging(0.604)	tolerated(0.16)	neutral(0.269)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92762752	92762752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152703.2	-1	validated	p.P845T	1.000	232	0%	50	16%	15	13.3%	probably_damaging(0.999)	tolerated(0.62)	deleterious(0.494)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92763359	92763359	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152703.2	-1	validated	p.S642	0.000	189	0%	54	22.2%	4	0%	-	-	-	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92764617	92764617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152703.2	-1	validated	p.R223Q	1.000	276	1.8%	58	29.3%	7	14.2%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
CCDC132	55610	genome.wustl.edu	37	7	92938163	92938163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017667.2	+1	validated	p.A553T	1.000	392	0%	125	20%	19	47.3%	benign(0.073)	tolerated(0.12)	neutral(0.266)	NULL
CALCR	799	genome.wustl.edu	37	7	93106878	93106878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001742.3	-1	reviewed	p.D103G	1.000	226	0%	46	17.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_HRM,HMMSmart_HormR,superfamily_SSF111418,superfamily_SSF81321
COL1A2	1278	genome.wustl.edu	37	7	94037655	94037655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000089.3	+1	reviewed	p.R234H	1.000	602	0.2%	574	21.1%	98	3%	unknown(0)	deleterious(0.01)	-	HMMPfam_Collagen
CASD1	64921	genome.wustl.edu	37	7	94147631	94147631	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022900.4	+1	validated	p.N116T	1.000	133	0%	126	19.8%	2	50%	benign(0.139)	tolerated(0.34)	neutral(0.035)	superfamily_Cyclin_like
CASD1	64921	genome.wustl.edu	37	7	94167087	94167087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022900.4	+1	validated	p.M383V	1.000	360	0%	115	13%	1	0%	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_Cas1p
SGCE	8910	genome.wustl.edu	37	7	94228089	94228089	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000428696	-1	known	p.S396N	1.000	429	0%	90	25.6%	34	47%	-	-	-	HMMPfam_Sarcoglycan_2
PPP1R9A	55607	genome.wustl.edu	37	7	94540230	94540230	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017650.2	+1	validated	p.E269*	0.983	161	0%	184	16.8%	0	-	-	-	-	NULL
PPP1R9A	55607	genome.wustl.edu	37	7	94897956	94897956	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017650.2	+1	validated	p.P898	0.944	189	0%	68	20.6%	0	-	-	-	-	NULL
PON1	5444	genome.wustl.edu	37	7	94953745	94953745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000446.5	-1	reviewed	p.A15T	0.008	146	0%	121	26.4%	0	-	benign(0.273)	deleterious(0.01)	neutral(0.435)	NULL
PON3	5446	genome.wustl.edu	37	7	94996745	94996745	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000940.2	-1	reviewed	p.E141	1.000	299	0%	96	18.8%	0	-	-	-	-	superfamily_Calcium-dependent phosphotriesterase
PON2	5445	genome.wustl.edu	37	7	95045610	95045610	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000305.2	-1	reviewed	e3-1	1.000	439	0%	198	22.7%	0	-	-	-	-	-
ASB4	51666	genome.wustl.edu	37	7	95125325	95125325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016116.1	+1	reviewed	p.T148I	1.000	254	0%	121	24%	0	-	benign(0.043)	tolerated(0.11)	neutral(0.274)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
DYNC1I1	1780	genome.wustl.edu	37	7	95606854	95606854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004411.4	+1	validated	p.S191Y	0.821	463	0%	79	25.3%	0	-	benign(0.003)	tolerated(0.17)	neutral(0.059)	superfamily_WD40 repeat-like
ACN9	57001	genome.wustl.edu	37	7	96747038	96747038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020186.2	+1	validated	p.M1I	0.999	45	0%	51	21.6%	15	20%	possibly_damaging(0.797)	deleterious(0)	deleterious(0.744)	NULL
ASNS	440	genome.wustl.edu	37	7	97493754	97493754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001673.4	-1	reviewed	p.L102I	1.000	165	0%	145	22.1%	24	41.6%	benign(0.013)	tolerated(0.27)	neutral(0.034)	HMMPfam_GATase_2,superfamily_SSF56235
TECPR1	25851	genome.wustl.edu	37	7	97851776	97851776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015395.1	-1	provisional	p.A996S	0.887	34	0%	30	30%	4	0%	benign(0.016)	tolerated(0.57)	neutral(0.007)	HMMSmart_SM00706
TECPR1	25851	genome.wustl.edu	37	7	97852982	97852982	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015395.1	-1	provisional	p.C913*	0.999	282	0%	214	25.2%	4	0%	-	-	-	HMMSmart_SM00694
TECPR1	25851	genome.wustl.edu	37	7	97862231	97862231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015395.1	-1	provisional	p.A576T	0.994	55	0%	65	29.2%	8	12.5%	benign(0.198)	tolerated(0.07)	neutral(0.338)	NULL
BRI3	25798	genome.wustl.edu	37	7	97911726	97911726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015379.4	+1	validated	p.A69V	1.000	167	0%	251	22.7%	408	32.8%	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_DUF2367
TMEM130	222865	genome.wustl.edu	37	7	98460980	98460980	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134450.1	-1	validated	p.T43	0.924	192	0%	122	23%	0	-	-	-	-	NULL
TRRAP	8295	genome.wustl.edu	37	7	98515048	98515048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003496.2	+1	validated	p.L790M	0.991	140	0%	89	20.2%	4	75%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98533290	98533290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003496.2	+1	validated	p.A1368V	1.000	283	0%	216	26.4%	5	60%	possibly_damaging(0.836)	tolerated(0.11)	deleterious(0.591)	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98574615	98574615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003496.2	+1	validated	p.M2742I	1.000	366	0%	351	20.5%	14	35.7%	possibly_damaging(0.496)	deleterious(0.05)	deleterious(0.511)	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98581728	98581728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003496.2	+1	validated	p.A2987V	0.999	292	0%	264	12.1%	19	15.7%	benign(0.15)	tolerated(0.9)	neutral(0.013)	HMMPfam_FAT,superfamily_ARM repeat,superfamily_Protein prenylyltransferase,superfamily_TPR-like
TRRAP	8295	genome.wustl.edu	37	7	98586433	98586433	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000456197	+1	known	p.T2860M	0.840	216	0%	178	23.6%	17	35.2%	-	-	-	HMMPfam_FAT,superfamily_ARM repeat,superfamily_Protein prenylyltransferase,superfamily_TPR-like
TRRAP	8295	genome.wustl.edu	37	7	98601997	98601997	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003496.2	+1	validated	p.F3455L	1.000	147	0%	185	24.9%	36	36.1%	benign(0.08)	tolerated(1)	neutral(0.005)	superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98609024	98609024	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003496.2	+1	validated	p.L3692	1.000	163	0%	150	26%	64	45.3%	-	-	-	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
KPNA7	402569	genome.wustl.edu	37	7	98786147	98786147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145715.1	-1	validated	p.L226M	1.000	41	0%	30	13.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Arm,HMMSmart_ARM,superfamily_ARM-type_fold
ARPC1B	10095	genome.wustl.edu	37	7	98984412	98984412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005720.2	+1	reviewed	p.G57C	1.000	161	0.6%	133	24.1%	275	13%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
PDAP1	11333	genome.wustl.edu	37	7	98995519	98995519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014891.5	-1	validated	p.E151D	0.992	327	0%	325	21.2%	363	44%	possibly_damaging(0.45)	deleterious(0.02)	deleterious(0.530)	HMMPfam_PP28
PDAP1	11333	genome.wustl.edu	37	7	98995532	98995532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014891.5	-1	validated	p.R147Q	1.000	382	0.3%	355	20%	374	43%	possibly_damaging(0.881)	deleterious(0.01)	deleterious(0.749)	HMMPfam_PP28
PTCD1	26024	genome.wustl.edu	37	7	99032744	99032744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015545.2	-1	validated	p.P41Q	0.000	57	0%	59	30.5%	11	27.2%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
ZNF394	84124	genome.wustl.edu	37	7	99092065	99092065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032164.2	-1	provisional	p.S258F	0.984	244	0%	162	21%	18	33.3%	probably_damaging(0.959)	deleterious(0.04)	deleterious(0.752)	NULL
FAM200A	221786	genome.wustl.edu	37	7	99144854	99144854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145111.2	-1	validated	p.R393C	0.356	84	0%	96	19.8%	20	60%	benign(0.008)	tolerated(0.09)	neutral(0.296)	NULL
ZKSCAN1	7586	genome.wustl.edu	37	7	99627966	99627966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003439.1	+1	validated	p.R256M	1.000	496	0%	188	25%	1	100%	probably_damaging(0.96)	tolerated(0.35)	neutral(0.424)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZKSCAN1	7586	genome.wustl.edu	37	7	99631760	99631760	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003439.1	+1	validated	p.A544	0.358	154	0%	98	18.4%	3	66.6%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
TAF6	6878	genome.wustl.edu	37	7	99709746	99709746	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005641.2	-1	reviewed	p.C235	0.997	41	0%	64	25%	36	19.4%	-	-	-	NULL
TAF6	6878	genome.wustl.edu	37	7	99709801	99709801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005641.2	-1	reviewed	p.S217Y	1.000	55	0%	71	18.3%	18	38.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAF6	6878	genome.wustl.edu	37	7	99711494	99711494	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005641.2	-1	reviewed	p.V80	0.205	180	0%	166	24.7%	50	68%	-	-	-	superfamily_Histone-fold
TAF6	6878	genome.wustl.edu	37	7	99711722	99711722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005641.2	-1	reviewed	p.Q37H	0.999	211	0.5%	172	13.4%	41	24.3%	benign(0.198)	tolerated(0.07)	neutral(0.338)	HMMPfam_TAF,HMMSmart_SM00803,superfamily_Histone-fold
C7orf43	55262	genome.wustl.edu	37	7	99755322	99755322	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018275.3	-1	predicted	p.R191*	1.000	127	0%	137	24.1%	7	28.5%	-	-	-	NULL
LOC100287198	100287198	genome.wustl.edu	37	7	99771649	99771649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342774.1	+1	model	p.S437F	0.002	29	0%	39	15.4%	0	-	-	-	-	NULL
STAG3	10734	genome.wustl.edu	37	7	99811630	99811630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012447.2	+1	validated	p.D1224Y	1.000	316	0%	240	19.2%	1	0%	possibly_damaging(0.465)	deleterious(0)	deleterious(0.598)	NULL
GATS	352954	genome.wustl.edu	37	7	99820262	99820262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000436886	-1	known	p.A194V	0.950	496	0%	410	26.1%	2	0%	-	-	-	NULL
PILRB	29990	genome.wustl.edu	37	7	99956960	99956960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013440.3	+1	reviewed	p.A152D	0.046	319	0%	247	21.9%	55	29%	possibly_damaging(0.816)	tolerated(0.15)	deleterious(0.549)	NULL
MEPCE	56257	genome.wustl.edu	37	7	100028423	100028423	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019606.4	+1	provisional	p.K261T	1.000	86	0%	88	27.3%	32	46.8%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
NYAP1	222950	genome.wustl.edu	37	7	100087095	100087095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173564.2	+1	predicted	p.P584H	1.000	33	0%	34	20.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ENSG00000205307	0	genome.wustl.edu	37	7	100170023	100170023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000342773	-1	known	p.A163T	0.000	106	0%	112	19.6%	10	20%	benign(0.001)	tolerated(0.14)	neutral(0.249)	NULL
PCOLCE	5118	genome.wustl.edu	37	7	100205408	100205408	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002593.3	+1	reviewed	p.K387	1.000	389	0%	377	25.7%	147	6.8%	-	-	-	superfamily_TIMP-like,HMMPfam_NTR,HMMSmart_SM00643
MOSPD3	64598	genome.wustl.edu	37	7	100210577	100210577	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040097.1	+1	reviewed	p.L55	1.000	34	0%	22	18.2%	39	41%	-	-	-	HMMPfam_Motile_Sperm,superfamily_PapD-like
ACTL6B	51412	genome.wustl.edu	37	7	100244644	100244644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016188.4	-1	reviewed	p.A296T	0.997	98	0%	98	32.7%	0	-	benign(0.197)	tolerated(0.07)	neutral(0.338)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
ZAN	7455	genome.wustl.edu	37	7	100364744	100364744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003386.1	+1	reviewed	p.R1575M	0.000	112	0%	58	17.2%	0	-	probably_damaging(0.981)	deleterious(0.04)	deleterious(0.774)	HMMPfam_VWD,HMMSmart_SM00216
EPHB4	2050	genome.wustl.edu	37	7	100416163	100416163	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004444.4	-1	reviewed	p.Y467	0.939	113	0%	96	20.8%	23	39.1%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SLC12A9	56996	genome.wustl.edu	37	7	100451887	100451887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020246.2	+1	validated	p.A23V	0.001	204	0%	206	26.2%	7	28.5%	benign(0.02)	tolerated(0.3)	neutral(0.030)	NULL
TRIP6	7205	genome.wustl.edu	37	7	100465797	100465797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003302.2	+1	reviewed	p.S102I	1.000	24	0%	33	21.2%	72	43%	benign(0.388)	-	-	NULL
SRRT	51593	genome.wustl.edu	37	7	100482019	100482019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015908.5	+1	validated	p.N263T	1.000	183	0%	135	23%	41	56%	benign(0.224)	tolerated(0.4)	neutral(0.038)	NULL
ACHE	43	genome.wustl.edu	37	7	100490017	100490017	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015831.2	-1	reviewed	p.T497	0.004	86	0%	119	21.8%	1	0%	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
MUC12	10071	genome.wustl.edu	37	7	100612946	100612946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000379442	+1	known	p.A15T	0.002	102	0%	120	22.5%	0	-	benign(0.071)	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100634127	100634127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000379442	+1	known	p.L238F	0.000	600	0%	249	21.7%	0	-	possibly_damaging(0.741)	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100644548	100644548	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000379442	+1	known	p.A3711	0.000	2227	0.1%	1219	10.2%	0	-	-	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100648001	100648001	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000379442	+1	known	p.G4862	0.000	524	0%	309	21%	0	-	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100676300	100676300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040105.1	+1	provisional	p.P535T	0.000	718	0%	287	25.8%	0	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100678994	100678994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040105.1	+1	provisional	p.A1433T	0.000	524	0%	211	14.2%	0	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100685988	100685988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040105.1	+1	provisional	p.P3764L	0.007	462	0%	116	12.9%	0	-	benign(0.296)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100695187	100695187	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040105.1	+1	provisional	p.V4349	0.003	227	0%	79	11.4%	3	33.3%	-	-	-	NULL
TRIM56	81844	genome.wustl.edu	37	7	100731291	100731291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030961.1	+1	provisional	p.A233V	0.001	28	0%	36	13.9%	0	-	benign(0.015)	tolerated(0.28)	neutral(0.032)	NULL
TRIM56	81844	genome.wustl.edu	37	7	100732298	100732298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030961.1	+1	provisional	p.R569W	0.071	19	0%	17	23.5%	8	50%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_NHL repeat
TRIM56	81844	genome.wustl.edu	37	7	100732583	100732583	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030961.1	+1	provisional	p.L664	1.000	290	0%	255	25.9%	6	50%	-	-	-	superfamily_NHL repeat
VGF	7425	genome.wustl.edu	37	7	100807324	100807324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003378.3	-1	reviewed	p.K267N	1.000	29	0%	11	36.4%	0	-	possibly_damaging(0.605)	deleterious(0)	deleterious(0.654)	NULL
MOGAT3	346606	genome.wustl.edu	37	7	100839508	100839508	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178176.2	-1	provisional	p.S277	0.996	65	0%	50	16%	0	-	-	-	-	HMMPfam_DAGAT
MOGAT3	346606	genome.wustl.edu	37	7	100842036	100842036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178176.2	-1	provisional	p.G122C	0.060	126	0.8%	118	27.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DAGAT
CUX1	1523	genome.wustl.edu	37	7	101840219	101840219	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000436903	+1	known	e15-1	1.000	342	0%	305	23.3%	4	50%	-	-	-	-
CUX1	1523	genome.wustl.edu	37	7	101918542	101918542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001913.2	+1	reviewed	p.A492V	0.530	96	0%	96	26%	56	30.3%	benign(0.002)	tolerated(0.27)	neutral(0.034)	HMMPfam_CASP_C
CUX1	1523	genome.wustl.edu	37	7	101921226	101921226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001913.2	+1	reviewed	p.R524C	1.000	25	0%	36	16.7%	59	32.2%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_CASP_C
CUX1	1523	genome.wustl.edu	37	7	101923410	101923410	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001913.2	+1	reviewed	p.R588	1.000	34	0%	44	29.5%	52	53.8%	-	-	-	HMMPfam_CASP_C
CUX1	1523	genome.wustl.edu	37	7	101925138	101925138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001913.2	+1	reviewed	p.L610M	1.000	107	0%	128	21.1%	68	32.3%	benign(0.022)	tolerated(0.08)	neutral(0.301)	HMMPfam_CASP_C
MIR548O	100313829	genome.wustl.edu	37	7	102046222	102046222	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000408583	-1	known	NULL	0.140	225	0%	158	27.8%	0	-	-	-	-	-
ORAI2	80228	genome.wustl.edu	37	7	102087367	102087367	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001126340.1	+1	validated	p.F211	0.990	43	0%	29	31%	16	43.7%	-	-	-	HMMPfam_DUF1650
FBXL13	222235	genome.wustl.edu	37	7	102566754	102566754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145032.3	-1	validated	p.T282N	0.020	193	0%	124	21.8%	2	50%	benign(0.026)	tolerated(0.72)	neutral(0.003)	superfamily_RNI-like
NAPEPLD	222236	genome.wustl.edu	37	7	102768952	102768952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122838.1	-1	validated	p.S91I	1.000	334	0%	123	14.6%	5	40%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
DNAJC2	27000	genome.wustl.edu	37	7	102960070	102960070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014377.1	-1	reviewed	p.A410T	1.000	417	0%	280	26.1%	46	36.9%	possibly_damaging(0.715)	deleterious(0.04)	deleterious(0.608)	NULL
SLC26A5	375611	genome.wustl.edu	37	7	103061246	103061246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198999.2	-1	reviewed	p.K77N	1.000	281	0%	96	22.9%	0	-	possibly_damaging(0.927)	deleterious(0)	deleterious(0.820)	NULL
RELN	5649	genome.wustl.edu	37	7	103179554	103179554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005045.3	-1	reviewed	p.A2384D	1.000	109	0%	66	18.2%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
MLL5	55904	genome.wustl.edu	37	7	104747618	104747618	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000334884	+1	known	p.F852I	1.000	122	0%	101	26.7%	8	37.5%	unknown(0)	deleterious(0)	-	NULL
SRPK2	6733	genome.wustl.edu	37	7	104783648	104783648	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182692.1	-1	validated	p.E315*	1.000	282	0%	199	22.6%	7	28.5%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
PUS7	54517	genome.wustl.edu	37	7	105103124	105103124	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019042.3	-1	validated	p.D567E	1.000	412	0%	317	24.6%	5	40%	benign(0.106)	tolerated(0.51)	neutral(0.017)	HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom
PUS7	54517	genome.wustl.edu	37	7	105105797	105105797	+	Silent	SNP	G	G	T	rs186485849	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019042.3	-1	validated	p.P530	0.101	423	0.2%	233	21.9%	5	20%	-	-	-	HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom
RINT1	60561	genome.wustl.edu	37	7	105183030	105183030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021930.4	+1	validated	p.S150I	0.055	272	0.7%	104	21.2%	7	28.5%	benign(0.286)	tolerated(0.09)	neutral(0.384)	NULL
RINT1	60561	genome.wustl.edu	37	7	105190606	105190606	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021930.4	+1	validated	p.N367	1.000	582	0%	270	25.6%	12	50%	-	-	-	HMMPfam_RINT1_TIP1
PIK3CG	5294	genome.wustl.edu	37	7	106509283	106509283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002649.2	+1	reviewed	p.G426E	1.000	70	0%	125	14.4%	2	0%	possibly_damaging(0.938)	deleterious(0.01)	deleterious(0.789)	HMMPfam_PI3K_C2,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PIK3CG	5294	genome.wustl.edu	37	7	106523506	106523506	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002649.2	+1	reviewed	p.T886	0.033	146	0%	122	15.6%	1	0%	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
PRKAR2B	5577	genome.wustl.edu	37	7	106781369	106781369	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002736.2	+1	reviewed	p.D186	0.995	553	0.2%	165	19.4%	3	0%	-	-	-	HMMPfam_cNMP_binding,HMMSmart_cNMP,PatternScan_CNMP_BINDING_1,superfamily_cNMP_binding
HBP1	26959	genome.wustl.edu	37	7	106826323	106826323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012257.3	+1	validated	p.S159L	0.996	265	0%	113	17.7%	31	45.1%	benign(0.005)	tolerated(0.22)	neutral(0.042)	NULL
DUS4L	11062	genome.wustl.edu	37	7	107214231	107214231	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181581.1	+1	validated	p.A107	0.798	543	0.2%	511	19.6%	5	20%	-	-	-	HMMPfam_Dus,superfamily_FMN-linked oxidoreductases
DUS4L	11062	genome.wustl.edu	37	7	107217950	107217950	+	Missense_Mutation	SNP	C	C	A	rs184033937	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181581.1	+1	validated	p.A300D	1.000	411	0%	562	19.8%	14	50%	benign(0.119)	tolerated(0.42)	neutral(0.024)	HMMPfam_Dus,superfamily_FMN-linked oxidoreductases
SLC26A4	5172	genome.wustl.edu	37	7	107329629	107329629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000441.1	+1	reviewed	p.T378I	0.536	338	0%	99	12.1%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_Sulfate_transp
SLC26A4	5172	genome.wustl.edu	37	7	107353062	107353062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000441.1	+1	reviewed	p.D772Y	1.000	477	0%	180	23.3%	0	-	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	NULL
CBLL1	79872	genome.wustl.edu	37	7	107389424	107389424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024814.2	+1	validated	p.A38V	0.974	296	0.3%	267	22.5%	5	40%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
CBLL1	79872	genome.wustl.edu	37	7	107389448	107389448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024814.2	+1	validated	p.R46I	1.000	273	0%	254	20.5%	6	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CBLL1	79872	genome.wustl.edu	37	7	107398623	107398623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024814.2	+1	validated	p.T159I	0.999	332	0%	159	18.9%	7	42.8%	benign(0.004)	tolerated(0.19)	neutral(0.050)	NULL
CBLL1	79872	genome.wustl.edu	37	7	107399203	107399203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024814.2	+1	validated	p.S352R	1.000	319	0%	192	20.8%	15	66.6%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
SLC26A3	1811	genome.wustl.edu	37	7	107434219	107434219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000111.2	-1	reviewed	p.G80D	1.000	145	0%	56	33.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LAMB1	3912	genome.wustl.edu	37	7	107580775	107580775	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002291.2	-1	reviewed	p.E1140	0.997	90	0%	46	19.6%	23	8.6%	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_EGF/Laminin
LAMB1	3912	genome.wustl.edu	37	7	107626773	107626773	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002291.2	-1	reviewed	p.S153	0.005	199	0%	99	22.2%	9	11.1%	-	-	-	HMMPfam_Laminin_N,HMMSmart_SM00136
LAMB1	3912	genome.wustl.edu	37	7	107635406	107635406	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002291.2	-1	reviewed	e4-1	1.000	280	0%	221	25.8%	0	-	-	-	-	-
LAMB4	22798	genome.wustl.edu	37	7	107677890	107677890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007356.2	-1	validated	p.R1541M	0.001	571	0%	165	27.9%	0	-	probably_damaging(0.954)	deleterious(0.03)	deleterious(0.762)	NULL
LAMB4	22798	genome.wustl.edu	37	7	107684261	107684261	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007356.2	-1	validated	p.N1469	0.999	826	0%	273	24.5%	0	-	-	-	-	NULL
LAMB4	22798	genome.wustl.edu	37	7	107718664	107718664	+	Missense_Mutation	SNP	G	G	A	rs192696808	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007356.2	-1	validated	p.A662V	0.003	155	0%	52	11.5%	0	-	benign(0.245)	tolerated(0.22)	neutral(0.067)	NULL
LAMB4	22798	genome.wustl.edu	37	7	107732171	107732171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007356.2	-1	validated	p.R534H	0.488	190	0%	84	13.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_1,superfamily_EGF/Laminin
LAMB4	22798	genome.wustl.edu	37	7	107732809	107732809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007356.2	-1	validated	p.C508Y	1.000	322	0%	140	15%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_EGF/Laminin
LAMB4	22798	genome.wustl.edu	37	7	107746348	107746348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007356.2	-1	validated	p.R262W	0.468	250	0%	104	16.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_N,HMMSmart_SM00136
PNPLA8	50640	genome.wustl.edu	37	7	108119718	108119718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015723.2	-1	provisional	p.R662C	1.000	361	0.3%	159	17.6%	25	48%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	superfamily_FabD/lysophospholipase-like
PNPLA8	50640	genome.wustl.edu	37	7	108128202	108128202	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015723.2	-1	provisional	e7+1	1.000	90	0%	56	23.2%	0	-	-	-	-	-
LRRN3	54674	genome.wustl.edu	37	7	110762961	110762961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099658.1	+1	validated	p.S45P	1.000	337	0%	105	13.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00013,superfamily_L domain-like
DOCK4	9732	genome.wustl.edu	37	7	111423943	111423943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014705.3	-1	reviewed	p.T1156I	1.000	352	0%	102	14.7%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM168	64418	genome.wustl.edu	37	7	112424334	112424334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022484.4	-1	validated	p.L183I	1.000	136	0%	121	24%	8	62.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
C7orf60	154743	genome.wustl.edu	37	7	112462088	112462088	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152556.2	-1	validated	p.F310C	1.000	284	0%	82	25.6%	1	0%	possibly_damaging(0.44)	tolerated(0.07)	neutral(0.463)	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113519585	113519585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002711.3	-1	reviewed	p.R521I	0.001	305	0%	92	18.5%	0	-	benign(0.404)	deleterious(0)	deleterious(0.575)	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113522175	113522175	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002711.3	-1	reviewed	p.E295D	0.971	489	0%	115	12.2%	0	-	benign(0.009)	tolerated(0.69)	neutral(0.003)	NULL
FOXP2	93986	genome.wustl.edu	37	7	114268649	114268649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_148898.2	+1	reviewed	p.Q130K	1.000	337	0%	131	21.4%	1	100%	unknown(0)	deleterious(0)	-	NULL
MDFIC	29969	genome.wustl.edu	37	7	114582421	114582421	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000393486	+1	known	p.W62*	0.997	230	0%	80	18.8%	12	41.6%	-	-	-	NULL
MET	4233	genome.wustl.edu	37	7	116417489	116417489	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127500.1	+1	reviewed	p.G1120	1.000	557	0%	143	14.7%	42	28.5%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP
CAPZA2	830	genome.wustl.edu	37	7	116502697	116502697	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006136.2	+1	reviewed	p.E11V	1.000	28	0%	18	22.2%	22	13.6%	benign(0.132)	deleterious(0.03)	neutral(0.376)	superfamily_Subunits of heterodimeric actin filament capping protein Capz
KCND2	3751	genome.wustl.edu	37	7	119915141	119915141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012281.2	+1	reviewed	p.A152V	0.857	65	0%	90	17.8%	0	-	benign(0.045)	tolerated(0.28)	neutral(0.034)	NULL
KCND2	3751	genome.wustl.edu	37	7	119915492	119915492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012281.2	+1	reviewed	p.A269D	1.000	228	0%	374	21.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ING3	54556	genome.wustl.edu	37	7	120591238	120591238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019071.2	+1	reviewed	p.D17Y	1.000	57	0%	105	20%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ING3	54556	genome.wustl.edu	37	7	120610860	120610860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019071.2	+1	reviewed	p.P343S	1.000	279	0%	239	18.4%	3	66.6%	benign(0)	tolerated(0.84)	neutral(0.001)	NULL
WNT16	51384	genome.wustl.edu	37	7	120969389	120969389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_057168.1	+1	reviewed	p.L15M	1.000	46	0%	47	23.4%	0	-	possibly_damaging(0.923)	tolerated(0.07)	deleterious(0.692)	NULL
FAM3C	10447	genome.wustl.edu	37	7	121004224	121004224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040020.1	-1	reviewed	p.K97N	1.000	421	0%	167	20.4%	21	28.5%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121636607	121636607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002851.2	+1	reviewed	p.G367D	1.000	330	0%	280	21.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRZ1	5803	genome.wustl.edu	37	7	121650585	121650585	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002851.2	+1	reviewed	p.V495	0.004	182	0%	65	26.2%	0	-	-	-	-	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121650977	121650977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002851.2	+1	reviewed	p.S626Y	0.066	124	0%	41	19.5%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121652757	121652757	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002851.2	+1	reviewed	p.S1219	0.247	302	0%	125	25.6%	0	-	-	-	-	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121653014	121653014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002851.2	+1	reviewed	p.P1305H	0.015	145	0%	66	9.1%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
AASS	10157	genome.wustl.edu	37	7	121741719	121741719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005763.3	-1	reviewed	p.T432A	0.780	157	0%	62	22.6%	0	-	benign(0.009)	tolerated(0.61)	neutral(0.005)	NULL
CADPS2	93664	genome.wustl.edu	37	7	122255308	122255308	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017954.10	-1	reviewed	p.R384*	1.000	306	0.3%	86	23.3%	4	0%	-	-	-	HMMPfam_C2
RNF133	168433	genome.wustl.edu	37	7	122338164	122338164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139175.1	-1	reviewed	p.R270H	0.986	315	0%	159	24.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
RNF148	378925	genome.wustl.edu	37	7	122341977	122341977	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198085.1	-1	validated	p.C276	1.000	378	0%	139	15.8%	1	100%	-	-	-	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
CADPS2	93664	genome.wustl.edu	37	7	122526062	122526062	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017954.10	-1	reviewed	p.R110	1.000	38	0%	62	19.4%	1	0%	-	-	-	NULL
SLC13A1	6561	genome.wustl.edu	37	7	122787213	122787213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022444.3	-1	validated	p.T271I	0.403	362	0.3%	72	18.1%	0	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_Na_sulph_symp
IQUB	154865	genome.wustl.edu	37	7	123142803	123142803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178827.4	-1	validated	p.V291I	0.963	385	0%	169	14.8%	0	-	benign(0.264)	tolerated(0.14)	neutral(0.277)	NULL
IQUB	154865	genome.wustl.edu	37	7	123152312	123152312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178827.4	-1	validated	p.T28N	0.000	340	0%	178	20.8%	2	50%	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
ASB15	142685	genome.wustl.edu	37	7	123264751	123264751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080928.3	+1	validated	p.A194T	0.465	211	0%	124	21%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ASB15	142685	genome.wustl.edu	37	7	123268931	123268931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080928.3	+1	validated	p.L295I	1.000	257	0%	147	23.8%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
LMOD2	442721	genome.wustl.edu	37	7	123302929	123302929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207163.1	+1	validated	p.P430H	0.994	59	0%	41	34.1%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
GPR37	2861	genome.wustl.edu	37	7	124404355	124404355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005302.2	-1	provisional	p.G226S	0.000	32	0%	59	28.8%	0	-	benign(0.069)	tolerated(0.15)	neutral(0.245)	superfamily_Family A G protein-coupled receptor-like
GPR37	2861	genome.wustl.edu	37	7	124404612	124404612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005302.2	-1	provisional	p.T140M	0.000	26	0%	59	15.3%	1	100%	possibly_damaging(0.605)	tolerated(0.06)	deleterious(0.532)	NULL
GRM8	2918	genome.wustl.edu	37	7	126409960	126409960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000845.2	-1	reviewed	p.G439V	1.000	282	0%	53	18.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GCC1	79571	genome.wustl.edu	37	7	127222473	127222473	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024523.5	-1	reviewed	p.Q641H	1.000	191	0%	204	19.1%	12	33.3%	probably_damaging(0.992)	tolerated(0.05)	deleterious(0.793)	NULL
GCC1	79571	genome.wustl.edu	37	7	127222793	127222793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024523.5	-1	reviewed	p.R535W	1.000	100	0%	83	13.3%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARF5	381	genome.wustl.edu	37	7	127231035	127231035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001662.2	+1	reviewed	p.R117W	1.000	83	0%	100	19%	693	39.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
FSCN3	29999	genome.wustl.edu	37	7	127235681	127235681	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020369.1	+1	provisional	p.C155*	1.000	238	0.4%	180	22.2%	0	-	-	-	-	superfamily_Actin_crosslink
PAX4	5078	genome.wustl.edu	37	7	127253110	127253110	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006193.2	-1	reviewed	p.R219	1.000	208	0%	135	16.3%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
SND1	27044	genome.wustl.edu	37	7	127342562	127342562	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014390.2	+1	validated	p.V221	1.000	283	0%	118	14.4%	78	24.3%	-	-	-	HMMSmart_SNc,superfamily_Staphylococal_nuclease_OB-fold
LRRC4	64101	genome.wustl.edu	37	7	127669241	127669241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022143.4	-1	validated	p.P485S	1.000	250	0%	244	25.4%	5	80%	benign(0.003)	deleterious(0.03)	neutral(0.364)	NULL
LEP	3952	genome.wustl.edu	37	7	127892105	127892105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000230.2	+1	reviewed	p.L12I	1.000	539	0%	400	26%	0	-	possibly_damaging(0.911)	deleterious(0.01)	deleterious(0.768)	NULL
RBM28	55131	genome.wustl.edu	37	7	127965930	127965930	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018077.2	-1	reviewed	p.Q382*	1.000	140	0%	46	17.4%	13	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
PRRT4	401399	genome.wustl.edu	37	7	127998735	127998735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114726.2	-1	validated	p.D293Y	0.978	113	0%	130	20%	0	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
PRRT4	401399	genome.wustl.edu	37	7	127998845	127998845	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000480290	-1	known	p.W137*	1.000	138	0%	153	28.1%	0	-	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
PRRT4	401399	genome.wustl.edu	37	7	127999683	127999683	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000480290	-1	known	p.A3T	0.000	34	0%	54	25.9%	0	-	-	-	-	NULL
IMPDH1	3614	genome.wustl.edu	37	7	128036694	128036694	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000883.3	-1	reviewed	p.R407	0.927	34	0%	35	25.7%	24	16.6%	-	-	-	HMMPfam_IMPDH,PatternScan_IMP_DH_GMP_RED,superfamily_SSF51412
METTL2B	55798	genome.wustl.edu	37	7	128119511	128119511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018396.2	+1	reviewed	p.L168M	0.173	783	0%	583	14.4%	12	25%	possibly_damaging(0.918)	tolerated(0.22)	neutral(0.410)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
FAM71F2	346653	genome.wustl.edu	37	7	128320096	128320096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000477515	+1	known	p.A126V	0.703	117	0%	73	26%	0	-	unknown(0)	-	-	NULL
FAM71F1	84691	genome.wustl.edu	37	7	128356889	128356889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032599.2	+1	validated	p.R91I	0.047	301	0%	86	11.6%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
CCDC136	64753	genome.wustl.edu	37	7	128454781	128454781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022742.3	+1	validated	p.E951D	1.000	78	0%	42	23.8%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	superfamily_Spectrin repeat
CCDC136	64753	genome.wustl.edu	37	7	128457826	128457826	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022742.3	+1	validated	p.P1126	0.976	896	0%	591	20%	0	-	-	-	-	NULL
FLNC	2318	genome.wustl.edu	37	7	128481417	128481417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001458.4	+1	reviewed	p.K669N	1.000	191	0.5%	167	24.6%	1	0%	benign(0.005)	tolerated(0.12)	neutral(0.261)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNC	2318	genome.wustl.edu	37	7	128485220	128485220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001458.4	+1	reviewed	p.P1234L	0.995	51	0%	36	19.4%	5	0%	benign(0)	tolerated(0.74)	neutral(0.002)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNC	2318	genome.wustl.edu	37	7	128489530	128489530	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001458.4	+1	reviewed	p.D1699	0.510	136	0%	134	23.9%	5	0%	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
ENSG00000221401	0	genome.wustl.edu	37	7	128546942	128546942	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000408474	+1	novel	NULL	0.001	28	0%	27	22.2%	0	-	-	-	-	-
IRF5	3663	genome.wustl.edu	37	7	128587936	128587936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098629.1	+1	reviewed	p.R314H	1.000	55	0%	62	17.7%	17	35.2%	possibly_damaging(0.643)	tolerated(0.41)	neutral(0.240)	superfamily_SMAD_FHA,HMMPfam_IRF-3
SMO	6608	genome.wustl.edu	37	7	128845145	128845145	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005631.3	+1	provisional	p.C213	0.970	59	1.7%	76	25%	32	34.3%	-	-	-	NULL
SMO	6608	genome.wustl.edu	37	7	128852035	128852035	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005631.3	+1	provisional	p.R703*	1.000	31	0%	35	25.7%	38	44.7%	-	-	-	NULL
SMO	6608	genome.wustl.edu	37	7	128852096	128852096	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005631.3	+1	provisional	p.D723V	0.629	37	0%	37	10.8%	42	2.3%	possibly_damaging(0.844)	deleterious(0.01)	deleterious(0.729)	NULL
SMO	6608	genome.wustl.edu	37	7	128852188	128852188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005631.3	+1	provisional	p.A754T	0.027	45	0%	26	26.9%	57	49.1%	benign(0.002)	tolerated(0.18)	neutral(0.056)	NULL
AHCYL2	23382	genome.wustl.edu	37	7	129064755	129064755	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015328.2	+1	validated	p.F534C	1.000	295	0%	223	16.1%	5	40%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_AdoHcyase,superfamily_NAD(P)-bd,superfamily_SSF52283
FAM40B	57464	genome.wustl.edu	37	7	129122798	129122798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020704.2	+1	validated	p.R722H	1.000	241	0%	157	10.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C7orf45	136263	genome.wustl.edu	37	7	129847895	129847895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145268.3	+1	validated	p.V49I	0.006	511	0.2%	485	21.4%	0	-	benign(0.001)	tolerated(1)	-	NULL
CPA1	1357	genome.wustl.edu	37	7	130021011	130021011	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001868.2	+1	reviewed	p.E46	1.000	74	0%	70	27.1%	0	-	-	-	-	HMMPfam_Propep_M14,superfamily_Prot_inh_propept
CPA1	1357	genome.wustl.edu	37	7	130022013	130022013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001868.2	+1	reviewed	p.G149D	1.000	71	0%	95	20%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,HMMSmart_Zn_pept,superfamily_SSF53187
CEP41	95681	genome.wustl.edu	37	7	130044439	130044439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018718.1	-1	provisional	p.G130R	0.967	216	0%	131	29.8%	17	52.9%	benign(0.22)	tolerated(0.19)	neutral(0.071)	superfamily_Rhodanese/Cell cycle control phosphatase
CEP41	95681	genome.wustl.edu	37	7	130044528	130044528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018718.1	-1	provisional	p.D100G	0.766	240	0%	125	11.2%	4	25%	benign(0.273)	deleterious(0.05)	neutral(0.374)	superfamily_Rhodanese/Cell cycle control phosphatase
MIR335	442904	genome.wustl.edu	37	7	130135979	130135979	+	RNA	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000362173	+1	known	NULL	1.000	261	0%	350	22.3%	0	-	-	-	-	-
MKLN1	4289	genome.wustl.edu	37	7	131082086	131082086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013255.4	+1	validated	p.G154D	1.000	465	0%	150	18.7%	9	55.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Galactose-binding domain-like,HMMPfam_Muskelin_N
PLXNA4	91584	genome.wustl.edu	37	7	131910962	131910962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020911.1	-1	validated	p.A647V	1.000	182	0%	76	9.2%	0	-	benign(0.006)	tolerated(1)	-	NULL
ENSG00000232856	0	genome.wustl.edu	37	7	132719609	132719609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000448615	-1	known	p.A127T	1.000	154	0%	73	21.9%	2199	0.1%	benign(0.014)	deleterious(0)	neutral(0.445)	HMMPfam_EF1G,superfamily_eEF1-gamma domain
LRGUK	136332	genome.wustl.edu	37	7	133812294	133812294	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144648.1	+1	provisional	p.S58	1.000	120	0%	71	28.2%	0	-	-	-	-	NULL
AKR1B10	57016	genome.wustl.edu	37	7	134216723	134216723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020299.4	+1	reviewed	p.L100M	1.000	511	0%	152	15.1%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
AGBL3	340351	genome.wustl.edu	37	7	134719028	134719028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178563.3	+1	provisional	p.T229I	0.996	196	0%	95	20%	0	-	benign(0.202)	tolerated(0.16)	neutral(0.079)	NULL
AGBL3	340351	genome.wustl.edu	37	7	134743925	134743925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178563.3	+1	provisional	p.R616Q	0.937	334	0%	169	29%	1	100%	benign(0.019)	tolerated(0.17)	neutral(0.060)	NULL
CNOT4	4850	genome.wustl.edu	37	7	135122919	135122919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013316.2	-1	validated	p.P54H	1.000	274	0%	121	15.7%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RING,superfamily_SSF57850
NUP205	23165	genome.wustl.edu	37	7	135300665	135300665	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015135.2	+1	validated	p.E1104	0.950	167	0%	77	15.6%	19	21%	-	-	-	NULL
NUP205	23165	genome.wustl.edu	37	7	135312781	135312781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015135.2	+1	validated	p.Q1618H	1.000	366	0%	200	21.5%	28	46.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC13A4	26266	genome.wustl.edu	37	7	135384209	135384209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012450.2	-1	validated	p.C267G	1.000	545	0.4%	304	25.7%	2	0%	benign(0.002)	tolerated(0.61)	neutral(0.004)	HMMPfam_Na_sulph_symp
MTPN	136319	genome.wustl.edu	37	7	135635429	135635429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145808.3	-1	reviewed	p.A63D	1.000	234	0%	107	21.5%	22	59%	probably_damaging(0.993)	tolerated(0.64)	neutral(0.453)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CHRM2	1129	genome.wustl.edu	37	7	136700033	136700033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000739.2	+1	reviewed	p.G141C	1.000	124	0.8%	31	19.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CHRM2	1129	genome.wustl.edu	37	7	136700446	136700446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000739.2	+1	reviewed	p.E278D	0.998	181	0%	46	19.6%	0	-	benign(0.268)	tolerated(0.44)	neutral(0.041)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DGKI	9162	genome.wustl.edu	37	7	137080353	137080353	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004717.2	-1	reviewed	p.T1024	0.999	87	0%	35	14.3%	0	-	-	-	-	HMMPfam_Ank,superfamily_ANK
DGKI	9162	genome.wustl.edu	37	7	137237288	137237288	+	Silent	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004717.2	-1	reviewed	p.G658	0.325	86	0%	79	17.7%	0	-	-	-	-	HMMPfam_DAGK_acc,HMMSmart_DAGKa
DGKI	9162	genome.wustl.edu	37	7	137308258	137308258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004717.2	-1	reviewed	p.A283S	1.000	490	0%	184	23.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_C1_1,HMMSmart_C1
DGKI	9162	genome.wustl.edu	37	7	137330284	137330284	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004717.2	-1	reviewed	e6-1	1.000	162	0%	108	25%	0	-	-	-	-	-
DGKI	9162	genome.wustl.edu	37	7	137363354	137363354	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004717.2	-1	reviewed	p.V185	1.000	86	0%	37	10.8%	0	-	-	-	-	HMMSmart_C1
CREB3L2	64764	genome.wustl.edu	37	7	137590448	137590448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194071.2	-1	validated	p.K305N	1.000	398	0%	232	19.4%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1
CREB3L2	64764	genome.wustl.edu	37	7	137613005	137613005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000420629	-1	known	p.R4Q	0.002	129	0%	50	14%	6	0%	unknown(0)	-	-	NULL
AKR1D1	6718	genome.wustl.edu	37	7	137773403	137773403	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005989.2	+1	validated	p.R50	0.121	321	0%	78	20.5%	0	-	-	-	-	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red,PatternScan_ALDOKETO_REDUCTASE_1
AKR1D1	6718	genome.wustl.edu	37	7	137773485	137773485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005989.2	+1	validated	p.R78W	0.040	332	0%	67	25.4%	0	-	possibly_damaging(0.889)	deleterious(0)	deleterious(0.794)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
AKR1D1	6718	genome.wustl.edu	37	7	137792315	137792315	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005989.2	+1	validated	p.E282*	1.000	208	0%	137	18.2%	0	-	-	-	-	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red,PatternScan_ALDOKETO_REDUCTASE_3
SVOPL	136306	genome.wustl.edu	37	7	138333812	138333812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001139456.1	-1	validated	p.R202H	1.000	81	0%	88	33%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ATP6V0A4	50617	genome.wustl.edu	37	7	138417717	138417717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020632.2	-1	reviewed	p.V605I	0.000	416	0%	202	20.8%	1	0%	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_V_ATPase_I
KIAA1549	57670	genome.wustl.edu	37	7	138554357	138554357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020910.2	-1	validated	p.A1518S	1.000	40	0%	55	23.6%	2	50%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
KIAA1549	57670	genome.wustl.edu	37	7	138554495	138554495	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020910.2	-1	validated	p.L1472	0.955	25	0%	27	29.6%	2	50%	-	-	-	NULL
KIAA1549	57670	genome.wustl.edu	37	7	138583724	138583724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020910.2	-1	validated	p.R1225Q	1.000	275	0%	181	24.3%	1	0%	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	NULL
TTC26	79989	genome.wustl.edu	37	7	138831936	138831936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024926.2	+1	validated	p.D149Y	1.000	287	0%	195	13.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF48452
TTC26	79989	genome.wustl.edu	37	7	138833067	138833067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024926.2	+1	validated	p.A221T	1.000	561	0.4%	309	22.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF48452
UBN2	254048	genome.wustl.edu	37	7	138951132	138951132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173569.3	+1	validated	p.M400I	1.000	223	0%	135	20.7%	0	-	benign(0.205)	tolerated(0.53)	neutral(0.028)	NULL
LUC7L2	51631	genome.wustl.edu	37	7	139094314	139094314	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016019.2	+1	validated	p.V231	0.905	183	0%	248	20.2%	32	3.1%	-	-	-	HMMPfam_LUC7
LUC7L2	51631	genome.wustl.edu	37	7	139102312	139102312	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016019.2	+1	validated	p.R280*	0.999	149	0%	112	17.9%	68	1.4%	-	-	-	NULL
TBXAS1	6916	genome.wustl.edu	37	7	139706905	139706905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001061.4	+1	reviewed	p.F384L	0.032	184	0%	198	24.2%	22	9%	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_p450,superfamily_Cytochrome P450
PARP12	64761	genome.wustl.edu	37	7	139757767	139757767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022750.2	-1	provisional	p.V132I	0.394	308	0%	326	23.6%	18	33.3%	benign(0.002)	tolerated(0.18)	neutral(0.056)	NULL
DENND2A	27147	genome.wustl.edu	37	7	140246612	140246612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015689.3	-1	validated	p.G722D	1.000	140	0%	91	24.2%	8	0%	possibly_damaging(0.47)	tolerated(0.13)	neutral(0.407)	HMMPfam_DENN,HMMSmart_SM00799
DENND2A	27147	genome.wustl.edu	37	7	140301869	140301869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015689.3	-1	validated	p.R110M	0.003	479	0%	208	18.3%	2	0%	possibly_damaging(0.906)	tolerated(0.24)	neutral(0.397)	NULL
ADCK2	90956	genome.wustl.edu	37	7	140374437	140374437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052853.3	+1	validated	p.Q320H	1.000	225	0%	300	10.3%	31	12.9%	benign(0.022)	deleterious(0.02)	neutral(0.384)	HMMPfam_ABC1,superfamily_Protein kinase-like (PK-like)
AGK	55750	genome.wustl.edu	37	7	141341709	141341709	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018238.3	+1	validated	e12+1	0.991	182	0%	93	17.2%	2	100%	-	-	-	-
AGK	55750	genome.wustl.edu	37	7	141352593	141352593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018238.3	+1	validated	p.G380W	0.022	238	0.4%	91	20.9%	22	31.8%	possibly_damaging(0.44)	deleterious(0.01)	deleterious(0.549)	NULL
TAS2R5	54429	genome.wustl.edu	37	7	141490923	141490923	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018980.2	+1	reviewed	p.V254	0.001	382	0%	333	21.9%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
OR9A4	130075	genome.wustl.edu	37	7	141619310	141619310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001656.1	+1	provisional	p.I212T	0.054	316	0%	223	17.5%	0	-	benign(0.078)	tolerated(0.2)	neutral(0.054)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MGAM	8972	genome.wustl.edu	37	7	141727469	141727469	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004668.2	+1	reviewed	p.Y385	0.421	177	0%	48	16.7%	0	-	-	-	-	HMMPfam_Glyco_hydro_31
MGAM	8972	genome.wustl.edu	37	7	141747586	141747586	+	Nonsense_Mutation	SNP	C	C	T	rs147987126	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004668.2	+1	reviewed	p.R834*	1.000	292	0%	75	32%	0	-	-	-	-	NULL
MGAM	8972	genome.wustl.edu	37	7	141755385	141755385	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004668.2	+1	reviewed	p.T1114	1.000	498	0%	198	17.2%	0	-	-	-	-	NULL
MGAM	8972	genome.wustl.edu	37	7	141756676	141756676	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004668.2	+1	reviewed	p.G1209	0.994	288	0%	173	17.3%	0	-	-	-	-	NULL
MGAM	8972	genome.wustl.edu	37	7	141762486	141762486	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004668.2	+1	reviewed	p.F1414C	1.000	418	0%	208	21.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Glyco_hydro_31
MGAM	8972	genome.wustl.edu	37	7	141776037	141776037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000475668	+1	known	p.E1771D	0.935	708	0%	266	19.9%	0	-	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
MGAM	8972	genome.wustl.edu	37	7	141781920	141781920	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000475668	+1	known	p.L2028	1.000	244	0%	77	14.3%	0	-	-	-	-	NULL
MGAM	8972	genome.wustl.edu	37	7	141795375	141795375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004668.2	+1	reviewed	p.P1594H	1.000	336	0%	120	25.8%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Glyco_hydro_31
TRBV7-8	28590	genome.wustl.edu	37	7	142099928	142099928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390359	-1	known	p.R4M	0.001	179	0%	85	21.2%	4	0%	possibly_damaging(0.812)	deleterious(0.01)	deleterious(0.711)	NULL
TRBV6-6	28601	genome.wustl.edu	37	7	142162344	142162344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390371	-1	known	p.C7Y	0.000	184	0%	55	18.2%	1	0%	possibly_damaging(0.903)	tolerated(0.91)	neutral(0.358)	NULL
TRBV6-4	28603	genome.wustl.edu	37	7	142250765	142250765	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390360	-1	known	p.P94	0.002	171	0%	47	21.3%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
TRPV5	56302	genome.wustl.edu	37	7	142612134	142612134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019841.4	-1	reviewed	p.A457T	0.996	139	0%	64	20.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ion_trans
TRPV5	56302	genome.wustl.edu	37	7	142622670	142622670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019841.4	-1	reviewed	p.R359H	0.997	162	0.6%	78	16.7%	0	-	benign(0.03)	tolerated(0.36)	neutral(0.022)	NULL
PIP	5304	genome.wustl.edu	37	7	142836614	142836614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002652.2	+1	validated	p.T107N	0.003	250	0%	197	19.8%	0	-	benign(0.104)	tolerated(0.59)	neutral(0.013)	HMMPfam_SVA
TAS2R40	259286	genome.wustl.edu	37	7	142919744	142919744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176882.1	+1	provisional	p.M191I	0.002	279	0%	115	23.5%	0	-	benign(0.009)	tolerated(0.17)	neutral(0.059)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
CASP2	835	genome.wustl.edu	37	7	142989540	142989540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032982.2	+1	reviewed	p.L125F	0.091	481	0%	400	18.5%	18	33.3%	benign(0.004)	deleterious(0.04)	neutral(0.349)	NULL
CASP2	835	genome.wustl.edu	37	7	142991814	142991814	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032982.2	+1	reviewed	p.L232R	1.000	239	0%	206	14.1%	21	33.3%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CASP2	835	genome.wustl.edu	37	7	142997111	142997111	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032982.2	+1	reviewed	p.G281	0.624	109	0%	62	11.3%	15	46.6%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CASP2	835	genome.wustl.edu	37	7	143002054	143002054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032982.2	+1	reviewed	p.R417W	0.972	181	1.1%	97	10.3%	28	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
ZYX	7791	genome.wustl.edu	37	7	143085956	143085956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010972.1	+1	reviewed	p.V471M	0.996	33	0%	50	18%	518	26%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
ZYX	7791	genome.wustl.edu	37	7	143086011	143086011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010972.1	+1	reviewed	p.R489Q	0.999	23	0%	42	23.8%	459	29.8%	benign(0.001)	tolerated(0.36)	neutral(0.020)	HMMPfam_LIM,HMMSmart_LIM,superfamily_SSF57716
TAS2R60	338398	genome.wustl.edu	37	7	143141039	143141039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177437.1	+1	provisional	p.R165I	0.000	352	0%	166	29.5%	0	-	benign(0.001)	tolerated(0.44)	neutral(0.013)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R60	338398	genome.wustl.edu	37	7	143141158	143141158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177437.1	+1	provisional	p.P205S	0.019	265	0%	112	31.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R41	259287	genome.wustl.edu	37	7	143175634	143175634	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176883.2	+1	provisional	p.D223	0.138	211	0%	79	15.2%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
FAM115A	9747	genome.wustl.edu	37	7	143556094	143556094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014719.1	-1	predicted	p.E776D	1.000	93	0%	69	18.8%	10	30%	possibly_damaging(0.914)	deleterious(0)	deleterious(0.810)	NULL
OR6B1	135946	genome.wustl.edu	37	7	143701517	143701517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005281.1	+1	provisional	p.R143H	0.055	182	0%	121	19.8%	0	-	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2A14	135941	genome.wustl.edu	37	7	143826869	143826869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001659.1	+1	provisional	p.A222T	0.000	212	0%	128	18.8%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARHGEF5	7984	genome.wustl.edu	37	7	144075925	144075925	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000474817	+1	known	p.P734L	0.013	313	0%	141	13.5%	21	23.8%	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
ARHGEF5	7984	genome.wustl.edu	37	7	144077129	144077129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005435.3	+1	reviewed	p.L1592M	1.000	134	0%	66	15.2%	27	25.9%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
NOBOX	135935	genome.wustl.edu	37	7	144097306	144097306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080413.2	-1	provisional	p.R315H	1.000	165	1.2%	179	22.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
CNTNAP2	26047	genome.wustl.edu	37	7	147869377	147869377	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014141.5	+1	reviewed	p.S939	1.000	159	0%	48	35.4%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CNTNAP2	26047	genome.wustl.edu	37	7	148106552	148106552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014141.5	+1	reviewed	p.A1262D	1.000	212	0%	107	25.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CUL1	8454	genome.wustl.edu	37	7	148495739	148495739	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003592.2	+1	validated	p.N702	0.976	510	0%	379	18.2%	124	31.4%	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
EZH2	2146	genome.wustl.edu	37	7	148524287	148524287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004456.3	-1	reviewed	p.D233Y	1.000	314	0%	277	14.1%	13	15.3%	benign(0.07)	tolerated(0.09)	neutral(0.301)	HMMSmart_SANT
EZH2	2146	genome.wustl.edu	37	7	148526820	148526820	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004456.3	-1	reviewed	p.E162*	1.000	344	0%	276	18.5%	5	0%	-	-	-	HMMSmart_SANT
PDIA4	9601	genome.wustl.edu	37	7	148705293	148705293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004911.4	-1	validated	p.F363L	1.000	265	0%	247	22.7%	185	42.1%	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	superfamily_Thioredoxin-like
ZNF786	136051	genome.wustl.edu	37	7	148769358	148769358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152411.3	-1	validated	p.R169I	0.013	107	0%	147	15%	7	14.2%	benign(0.031)	deleterious(0.02)	neutral(0.385)	NULL
LOC100288541	100288541	genome.wustl.edu	37	7	148851441	148851441	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342803.1	-1	model	p.E210D	0.000	67	0%	64	17.2%	0	-	-	-	-	NULL
LOC100288541	100288541	genome.wustl.edu	37	7	148888289	148888289	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342803.1	-1	model	p.R9	1.000	148	0%	204	24%	1	0%	-	-	-	superfamily_Zn-binding ribosomal proteins
ZNF282	8427	genome.wustl.edu	37	7	148921620	148921620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003575.2	+1	validated	p.G633S	0.988	52	0%	53	28.3%	19	21%	benign(0.002)	tolerated(1)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF777	27153	genome.wustl.edu	37	7	149129751	149129751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015694.2	-1	validated	p.R538W	1.000	53	0%	33	30.3%	18	38.8%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	superfamily_SSF57667
ZNF746	155061	genome.wustl.edu	37	7	149191116	149191116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152557.4	-1	validated	p.V124M	0.998	324	0%	366	21.9%	10	70%	possibly_damaging(0.817)	tolerated(0.06)	deleterious(0.631)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
SSPO	23145	genome.wustl.edu	37	7	149477954	149477954	+	Silent	SNP	C	C	T	rs184176440	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000378016	+1	known	p.F575	0.230	76	0%	107	18.7%	0	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216,HMMSmart_SM00215
SSPO	23145	genome.wustl.edu	37	7	149485527	149485527	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000378016	+1	known	p.G1311	1.000	154	0%	167	12.6%	0	-	-	-	-	superfamily_Serine proterase inhibitors,HMMPfam_TIL
SSPO	23145	genome.wustl.edu	37	7	149492670	149492670	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000378016	+1	known	p.S2150	1.000	68	0%	88	15.9%	0	-	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
SSPO	23145	genome.wustl.edu	37	7	149496954	149496954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000378016	+1	known	p.G2332R	0.000	60	0%	72	22.2%	0	-	-	-	-	NULL
SSPO	23145	genome.wustl.edu	37	7	149523273	149523273	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000378016	+1	known	p.R4787*	0.296	49	0%	66	22.7%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ZNF862	643641	genome.wustl.edu	37	7	149557632	149557632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099220.1	+1	provisional	p.R461S	0.984	163	0%	192	20.8%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00597
RARRES2	5919	genome.wustl.edu	37	7	150037219	150037219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002889.3	-1	reviewed	p.K83N	0.660	366	0%	446	14.8%	147	0%	possibly_damaging(0.911)	deleterious(0.02)	deleterious(0.746)	superfamily_Cystatin/monellin
GIMAP8	155038	genome.wustl.edu	37	7	150163915	150163915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175571.2	+1	reviewed	p.Q43H	0.000	304	0%	124	12.9%	1	0%	benign(0.115)	tolerated(0.22)	neutral(0.051)	HMMPfam_AIG1,superfamily_SSF52540
LOC100288724	100288724	genome.wustl.edu	37	7	150311703	150311703	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342806.1	-1	model	p.I53	0.073	136	0%	44	22.7%	0	-	-	-	-	HMMPfam_Ion_trans
TMEM176B	28959	genome.wustl.edu	37	7	150489197	150489197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001101311.1	-1	validated	p.V223I	0.995	332	0%	226	23%	238	0%	benign(0.036)	tolerated(0.45)	neutral(0.014)	HMMPfam_LR8
NOS3	4846	genome.wustl.edu	37	7	150699033	150699033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000603.4	+1	reviewed	p.R543W	1.000	37	0%	45	22.2%	5	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins
NOS3	4846	genome.wustl.edu	37	7	150704075	150704075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000603.4	+1	reviewed	p.G640V	1.000	84	0%	102	16.7%	7	0%	possibly_damaging(0.664)	deleterious(0)	deleterious(0.679)	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins
ASIC3	9311	genome.wustl.edu	37	7	150747925	150747925	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020321.2	+1	reviewed	p.P298	0.151	32	0%	78	16.7%	1	100%	-	-	-	HMMPfam_ASC
SLC4A2	6522	genome.wustl.edu	37	7	150761424	150761424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003040.3	+1	validated	p.G63C	1.000	75	0%	109	11.9%	39	23%	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	NULL
SLC4A2	6522	genome.wustl.edu	37	7	150761712	150761712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003040.3	+1	validated	p.P106H	0.988	89	0%	103	30.1%	28	53.5%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
SLC4A2	6522	genome.wustl.edu	37	7	150768651	150768651	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003040.3	+1	validated	p.F717C	1.000	95	0%	106	20.8%	78	51.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCO3_cotransp
AGAP3	116988	genome.wustl.edu	37	7	150784185	150784185	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000469901	+1	known	p.S11N	0.091	12	0%	19	42.1%	0	-	-	-	-	NULL
AGAP3	116988	genome.wustl.edu	37	7	150815681	150815681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031946.4	+1	validated	p.V311M	0.995	27	0%	45	33.3%	52	23%	probably_damaging(0.976)	tolerated(0.25)	neutral(0.455)	NULL
AGAP3	116988	genome.wustl.edu	37	7	150839671	150839671	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000461065	+1	known	p.S234Y	1.000	36	0%	23	26.1%	44	52.2%	-	-	-	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
AGAP3	116988	genome.wustl.edu	37	7	150840549	150840549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031946.4	+1	validated	p.R799W	1.000	151	0%	133	24.1%	53	32%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Ankyrin repeat
GBX1	2636	genome.wustl.edu	37	7	150846181	150846181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098834.1	-1	provisional	p.A196V	0.229	80	1.3%	67	19.4%	0	-	benign(0.135)	tolerated(0.25)	neutral(0.049)	NULL
ABCF2	10061	genome.wustl.edu	37	7	150921085	150921085	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005692.3	-1	reviewed	p.C161	1.000	247	0%	207	15.5%	33	30.3%	-	-	-	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
CHPF2	54480	genome.wustl.edu	37	7	150934654	150934654	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019015.1	+1	provisional	p.D402	0.691	43	0%	52	23.1%	44	31.8%	-	-	-	HMMPfam_CHGN
SMARCD3	6604	genome.wustl.edu	37	7	150937517	150937517	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003801.1	-1	reviewed	p.V344G	1.000	410	0%	358	19.8%	17	29.4%	benign(0.013)	tolerated(0.25)	neutral(0.037)	superfamily_SWIB/MDM2 domain
NUB1	51667	genome.wustl.edu	37	7	151072939	151072939	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000460712	+1	known	p.C54Y	0.976	556	0%	543	21%	100	45%	-	-	-	NULL
CRYGN	155051	genome.wustl.edu	37	7	151135019	151135019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000491928	-1	known	p.W111C	0.000	22	0%	24	29.2%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
PRKAG2	51422	genome.wustl.edu	37	7	151372575	151372575	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016203.3	-1	reviewed	p.C205	1.000	142	0%	57	17.5%	1	0%	-	-	-	NULL
GALNT11	63917	genome.wustl.edu	37	7	151805333	151805333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022087.2	+1	validated	p.S308F	0.637	80	0%	87	18.4%	27	48.1%	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
MLL3	58508	genome.wustl.edu	37	7	151853341	151853341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170606.2	-1	reviewed	p.A3921T	1.000	303	0%	161	23.6%	8	25%	benign(0.02)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151860743	151860743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170606.2	-1	reviewed	p.V3307M	1.000	572	0%	431	26.2%	4	75%	probably_damaging(0.998)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151866334	151866334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170606.2	-1	reviewed	p.D3152Y	1.000	296	0%	212	20.3%	1	0%	probably_damaging(1)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151868361	151868361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170606.2	-1	reviewed	p.Q3147H	0.955	372	0%	205	18.5%	1	100%	probably_damaging(0.995)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151874967	151874967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170606.2	-1	reviewed	p.R2524K	0.236	216	0%	110	22.7%	2	100%	possibly_damaging(0.9)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151878569	151878569	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170606.2	-1	reviewed	p.T2126S	0.097	420	0%	214	19.2%	0	-	benign(0.138)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151904420	151904420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170606.2	-1	reviewed	p.G1269D	0.783	781	0%	489	18.6%	2	50%	possibly_damaging(0.799)	-	-	NULL
PAXIP1	22976	genome.wustl.edu	37	7	154739619	154739619	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007349.3	-1	reviewed	p.L972	1.000	346	0%	165	17.6%	39	46.1%	-	-	-	HMMPfam_BRCT,HMMSmart_SM00292
PAXIP1	22976	genome.wustl.edu	37	7	154767485	154767485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007349.3	-1	reviewed	p.S332I	1.000	147	0%	139	29.5%	13	46.1%	unknown(0)	deleterious(0.01)	-	NULL
EN2	2020	genome.wustl.edu	37	7	155255189	155255189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001427.3	+1	reviewed	p.T270M	0.999	145	0%	103	20.4%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
CNPY1	285888	genome.wustl.edu	37	7	155299807	155299807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001103176.1	-1	validated	p.E50G	0.997	309	0%	307	21.2%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UBE3C	9690	genome.wustl.edu	37	7	156956529	156956529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014671.2	+1	validated	p.R31H	1.000	506	0%	351	19.9%	4	25%	possibly_damaging(0.682)	tolerated(0.26)	neutral(0.277)	NULL
UBE3C	9690	genome.wustl.edu	37	7	157016037	157016037	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014671.2	+1	validated	p.R698*	0.999	381	0%	273	22.7%	16	6.2%	-	-	-	NULL
DNAJB6	10049	genome.wustl.edu	37	7	157177617	157177617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_058246.3	+1	reviewed	p.S179P	0.698	549	0%	322	20.5%	114	35.9%	unknown(0)	tolerated(0.22)	-	NULL
ENSG00000186921	0	genome.wustl.edu	37	7	158415068	158415068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000335132	-1	known	p.A202T	0.880	304	0%	287	11.1%	3	0%	-	-	-	NULL
NCAPG2	54892	genome.wustl.edu	37	7	158486162	158486162	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017760.5	-1	validated	p.N36H	1.000	458	0%	381	12.6%	9	44.4%	possibly_damaging(0.775)	tolerated(0.13)	deleterious(0.541)	NULL
ESYT2	57488	genome.wustl.edu	37	7	158580768	158580768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020728.2	-1	validated	p.R273Q	1.000	226	0%	118	22%	15	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF596	169270	genome.wustl.edu	37	8	193762	193762	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042415.1	+1	validated	p.E60	0.199	385	0%	210	21.9%	0	-	-	-	-	HMMSmart_SM00349
ZNF596	169270	genome.wustl.edu	37	8	195158	195158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042415.1	+1	validated	p.S104Y	0.157	127	0%	83	10.8%	1	0%	benign(0.064)	tolerated(0.06)	neutral(0.327)	NULL
ERICH1	157697	genome.wustl.edu	37	8	623434	623434	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207332.1	-1	provisional	p.P306	0.000	307	0.3%	404	24%	30	30%	-	-	-	NULL
ERICH1	157697	genome.wustl.edu	37	8	623751	623751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207332.1	-1	provisional	p.G201C	0.000	230	0%	290	19%	20	35%	probably_damaging(0.955)	tolerated(0.06)	deleterious(0.721)	NULL
DLGAP2	9228	genome.wustl.edu	37	8	1581066	1581066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004745.3	+1	reviewed	p.A475D	1.000	282	0%	238	23.9%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
ARHGEF10	9639	genome.wustl.edu	37	8	1876701	1876701	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014629.2	+1	reviewed	p.L936	1.000	196	0%	212	25%	7	85.7%	-	-	-	superfamily_WD40_like
MYOM2	9172	genome.wustl.edu	37	8	2024245	2024245	+	Missense_Mutation	SNP	C	C	T	rs138100876	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003970.2	+1	validated	p.A382V	1.000	44	0%	54	22.2%	1	0%	benign(0.426)	tolerated(0.52)	neutral(0.147)	superfamily_FN_III-like
CSMD1	64478	genome.wustl.edu	37	8	2855701	2855701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033225.5	-1	validated	p.T2738A	1.000	224	0%	83	25.3%	0	-	probably_damaging(1)	tolerated(0.86)	deleterious(0.500)	superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	2857535	2857535	+	Silent	SNP	G	G	A	rs185898018	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033225.5	-1	validated	p.S2717	0.003	96	0%	52	19.2%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	2910169	2910169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033225.5	-1	validated	p.A2493D	1.000	115	0%	60	23.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
CSMD1	64478	genome.wustl.edu	37	8	3047537	3047537	+	Silent	SNP	G	G	A	rs192606706	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033225.5	-1	validated	p.F1766	0.958	174	0%	105	22.9%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	3081342	3081342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033225.5	-1	validated	p.P1466S	1.000	138	0%	67	26.9%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	3087598	3087598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033225.5	-1	validated	p.R1438W	1.000	234	0%	72	18.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	3165852	3165852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033225.5	-1	validated	p.P1270T	0.994	296	0.7%	92	27.2%	0	-	benign(0.392)	tolerated(0.06)	neutral(0.448)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ANGPT2	285	genome.wustl.edu	37	8	6420447	6420447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001147.2	-1	reviewed	p.Q3H	0.956	105	1%	75	13.3%	2	0%	possibly_damaging(0.502)	deleterious(0)	deleterious(0.612)	NULL
AGPAT5	55326	genome.wustl.edu	37	8	6605220	6605220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018361.3	+1	reviewed	p.P206S	1.000	369	0%	148	19.6%	16	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PlsC,superfamily_SSF69593
XKR5	389610	genome.wustl.edu	37	8	6669628	6669628	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000409172	-1	known	p.P383	0.000	131	0%	112	22.3%	2	50%	-	-	-	NULL
XKR5	389610	genome.wustl.edu	37	8	6690240	6690240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207411.4	-1	validated	p.R81W	1.000	132	0%	157	23.6%	0	-	-	-	-	HMMPfam_XK-related
SPAG11B	10407	genome.wustl.edu	37	8	7308297	7308297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_058201.2	-1	reviewed	p.V114I	0.000	1254	0%	554	12.5%	0	-	possibly_damaging(0.792)	tolerated(0.28)	neutral(0.329)	HMMPfam_Defensin_beta
SPAG11B	10407	genome.wustl.edu	37	8	7308671	7308671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016512.3	-1	reviewed	p.D89N	0.000	404	0%	219	14.6%	0	-	unknown(0)	tolerated(0.19)	-	NULL
SGK223	157285	genome.wustl.edu	37	8	8197041	8197041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080826.1	-1	validated	p.G756V	1.000	186	0%	85	18.8%	27	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MFHAS1	9258	genome.wustl.edu	37	8	8749618	8749618	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004225.2	-1	reviewed	p.G317	0.989	34	0%	58	29.3%	13	38.4%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
TNKS	8658	genome.wustl.edu	37	8	9413685	9413685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003747.2	+1	validated	p.R79L	0.433	40	0%	42	14.3%	1	0%	unknown(0)	deleterious(0.03)	-	NULL
TNKS	8658	genome.wustl.edu	37	8	9562213	9562213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003747.2	+1	validated	p.R383Q	0.999	524	0%	143	23.8%	1	100%	possibly_damaging(0.806)	deleterious(0.04)	deleterious(0.652)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PRSS55	203074	genome.wustl.edu	37	8	10388877	10388877	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198464.2	+1	validated	p.A140	0.000	119	0%	82	31.7%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
RP1L1	94137	genome.wustl.edu	37	8	10464781	10464781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178857.5	-1	validated	p.R2276M	0.053	143	0%	141	17.7%	0	-	unknown(0)	deleterious(0)	-	NULL
RP1L1	94137	genome.wustl.edu	37	8	10464900	10464900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178857.5	-1	validated	p.E2236D	0.000	478	0%	454	17.8%	0	-	unknown(0)	tolerated(0.11)	-	HMMPfam_S-antigen
RP1L1	94137	genome.wustl.edu	37	8	10467097	10467097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178857.5	-1	validated	p.S1504Y	0.000	16	0%	23	26.1%	0	-	unknown(0)	deleterious(0)	-	NULL
RP1L1	94137	genome.wustl.edu	37	8	10480293	10480293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178857.5	-1	validated	p.G140D	0.415	30	0%	35	17.1%	1	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	superfamily_SSF89837
MTMR9	66036	genome.wustl.edu	37	8	11162452	11162452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015458.3	+1	reviewed	p.R174W	0.998	415	0%	124	23.4%	5	40%	possibly_damaging(0.819)	deleterious(0.03)	deleterious(0.674)	HMMPfam_Myotub-related,superfamily_SSF52799
MTMR9	66036	genome.wustl.edu	37	8	11172535	11172535	+	Missense_Mutation	SNP	C	C	T	rs141801830	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015458.3	+1	reviewed	p.R359C	1.000	383	0%	175	22.9%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF52799
MTMR9	66036	genome.wustl.edu	37	8	11180244	11180244	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015458.3	+1	reviewed	p.R533*	0.879	240	0%	186	19.9%	2	0%	-	-	-	NULL
SLC35G5	83650	genome.wustl.edu	37	8	11189428	11189428	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_054028.1	+1	reviewed	p.G271	0.940	459	0%	566	22.1%	0	-	-	-	-	superfamily_SSF103481
ENSG00000205879	0	genome.wustl.edu	37	8	12033211	12033211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000382200	-1	known	p.R24W	0.072	280	0%	265	10.6%	2	0%	-	-	-	NULL
LONRF1	91694	genome.wustl.edu	37	8	12592878	12592878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152271.3	-1	provisional	p.G495R	1.000	279	0%	137	23.4%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box
DLC1	10395	genome.wustl.edu	37	8	12955994	12955994	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182643.2	-1	reviewed	p.Q1027	1.000	280	0%	218	26.1%	3	0%	-	-	-	NULL
DLC1	10395	genome.wustl.edu	37	8	12957119	12957119	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182643.2	-1	reviewed	p.I909	1.000	245	0%	166	21.1%	5	0%	-	-	-	NULL
TUSC3	7991	genome.wustl.edu	37	8	15480695	15480695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006765.2	+1	reviewed	p.R82L	1.000	170	0%	144	25%	35	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OST3_OST6,superfamily_Thioredoxin-like
MSR1	4481	genome.wustl.edu	37	8	15977937	15977937	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138715.2	-1	reviewed	p.H404	0.293	65	0%	42	21.4%	3	0%	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CNOT7	29883	genome.wustl.edu	37	8	17088235	17088235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013354.5	-1	reviewed	p.Q284H	1.000	280	0%	124	16.9%	94	43.6%	possibly_damaging(0.926)	tolerated(0.12)	deleterious(0.635)	NULL
SLC7A2	6542	genome.wustl.edu	37	8	17419458	17419458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003046.5	+1	validated	p.L543I	0.075	199	0%	71	26.8%	7	28.5%	benign(0.335)	tolerated(0.06)	neutral(0.428)	NULL
FGL1	2267	genome.wustl.edu	37	8	17731618	17731618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004467.3	-1	reviewed	p.K138E	0.267	122	3.3%	109	17.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Fibrinogen_C,HMMSmart_FBG,superfamily_Fibrinogen_a/b/g_C
FGL1	2267	genome.wustl.edu	37	8	17739683	17739683	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004467.3	-1	reviewed	p.L23	0.000	117	0%	52	26.9%	0	-	-	-	-	NULL
PCM1	5108	genome.wustl.edu	37	8	17817846	17817846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006197.3	+1	validated	p.L739I	1.000	175	0%	86	20.9%	13	0%	possibly_damaging(0.886)	tolerated(0.31)	neutral(0.373)	NULL
PCM1	5108	genome.wustl.edu	37	8	17823649	17823649	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006197.3	+1	validated	p.W999*	1.000	422	0%	157	21.7%	14	0%	-	-	-	NULL
PCM1	5108	genome.wustl.edu	37	8	17830019	17830019	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006197.3	+1	validated	p.E1256*	1.000	158	0%	62	21%	19	5.2%	-	-	-	NULL
ASAH1	427	genome.wustl.edu	37	8	17922036	17922036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004315.4	-1	reviewed	p.E145D	1.000	180	0%	116	20.7%	36	27.7%	benign(0.035)	tolerated(0.53)	neutral(0.009)	NULL
PSD3	23362	genome.wustl.edu	37	8	18729179	18729179	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015310.3	-1	validated	p.Q399*	0.002	537	0%	142	18.3%	2	100%	-	-	-	NULL
INTS10	55174	genome.wustl.edu	37	8	19701626	19701626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018142.2	+1	validated	p.G587W	1.000	285	0%	114	14%	107	24.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GFRA2	2675	genome.wustl.edu	37	8	21550813	21550813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001495.4	-1	reviewed	p.L458M	0.996	369	0.3%	223	25.6%	3	0%	benign(0.235)	tolerated(0.2)	neutral(0.073)	NULL
DOK2	9046	genome.wustl.edu	37	8	21768212	21768212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003974.2	-1	reviewed	p.R197M	1.000	143	0%	171	25.7%	17	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729
NPM2	10361	genome.wustl.edu	37	8	21882774	21882774	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182795.1	+1	validated	p.S5	0.007	40	0%	45	24.4%	4	0%	-	-	-	NULL
EPB49	2039	genome.wustl.edu	37	8	21938696	21938696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114135.2	+1	validated	p.R366W	0.995	112	0%	147	20.4%	24	45.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_VHP Villin headpiece domain
FAM160B2	64760	genome.wustl.edu	37	8	21955096	21955096	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022749.5	+1	validated	p.L123	0.996	76	0%	107	24.3%	15	46.6%	-	-	-	HMMPfam_RAI16-like
FAM160B2	64760	genome.wustl.edu	37	8	21956813	21956813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022749.5	+1	validated	p.A365T	1.000	127	0%	88	18.2%	18	55.5%	possibly_damaging(0.476)	tolerated(0.1)	neutral(0.444)	HMMPfam_RAI16-like
FAM160B2	64760	genome.wustl.edu	37	8	21957342	21957342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022749.5	+1	validated	p.G427R	0.007	51	0%	46	34.8%	20	20%	benign(0.002)	tolerated(0.36)	neutral(0.020)	HMMPfam_RAI16-like
FAM160B2	64760	genome.wustl.edu	37	8	21960076	21960076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022749.5	+1	validated	p.P677H	1.000	89	0%	106	21.7%	54	38.8%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
HR	55806	genome.wustl.edu	37	8	21976479	21976479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005144.4	-1	reviewed	p.R1066H	1.000	25	0%	33	24.2%	1	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMSmart_SM00558
HR	55806	genome.wustl.edu	37	8	21976786	21976786	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005144.4	-1	reviewed	p.P996	1.000	65	0%	60	21.7%	0	-	-	-	-	HMMSmart_SM00558
HR	55806	genome.wustl.edu	37	8	21984715	21984715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005144.4	-1	reviewed	p.A414T	1.000	24	0%	27	29.6%	0	-	benign(0.06)	deleterious(0.02)	neutral(0.387)	NULL
LGI3	203190	genome.wustl.edu	37	8	22006231	22006231	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139278.2	-1	validated	p.G363	1.000	75	0%	74	23%	0	-	-	-	-	HMMPfam_EPTP
BMP1	649	genome.wustl.edu	37	8	22052417	22052417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006129.4	+1	reviewed	p.V542F	0.998	99	0%	118	20.3%	8	12.5%	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
BMP1	649	genome.wustl.edu	37	8	22054866	22054866	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006129.4	+1	reviewed	p.N680	1.000	201	0%	174	19%	35	11.4%	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
BMP1	649	genome.wustl.edu	37	8	22064845	22064845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006129.4	+1	reviewed	p.Q797H	1.000	66	0%	91	24.2%	9	11.1%	benign(0)	tolerated(1)	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PHYHIP	9796	genome.wustl.edu	37	8	22079137	22079137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099335.1	-1	validated	p.P241L	1.000	30	0%	31	35.5%	3	0%	probably_damaging(0.992)	tolerated(0.33)	deleterious(0.472)	NULL
PIWIL2	55124	genome.wustl.edu	37	8	22173769	22173769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135721.1	+1	validated	p.M740I	1.000	305	0%	106	21.7%	0	-	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	HMMPfam_Piwi,superfamily_Ribonuclease H-like
SORBS3	10174	genome.wustl.edu	37	8	22414410	22414410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005775.4	+1	validated	p.A135T	1.000	30	0%	47	12.8%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sorb,HMMSmart_SM00459
PDLIM2	64236	genome.wustl.edu	37	8	22451394	22451394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021630.4	+1	validated	p.A344T	0.000	37	0%	29	24.1%	35	17.1%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
C8orf58	541565	genome.wustl.edu	37	8	22460156	22460156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013842.1	+1	validated	p.R329M	0.996	147	0%	185	23.2%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BIN3	55909	genome.wustl.edu	37	8	22494047	22494047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018688.4	-1	reviewed	p.A51T	1.000	301	0%	214	16.4%	31	38.7%	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	HMMPfam_BAR,HMMSmart_SM00721
EGR3	1960	genome.wustl.edu	37	8	22548553	22548553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004430.2	-1	reviewed	p.H199Q	1.000	165	0%	248	28.2%	0	-	possibly_damaging(0.602)	tolerated(1)	neutral(0.208)	NULL
RHOBTB2	23221	genome.wustl.edu	37	8	22862969	22862969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015178.2	+1	validated	p.R93C	0.999	221	0.5%	258	26%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RHO,superfamily_SSF52540
RHOBTB2	23221	genome.wustl.edu	37	8	22864872	22864872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015178.2	+1	validated	p.R372W	1.000	71	0%	84	27.4%	5	60%	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	HMMSmart_BTB,superfamily_BTB/POZ_fold
RHOBTB2	23221	genome.wustl.edu	37	8	22864942	22864942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015178.2	+1	validated	p.S395N	1.000	103	0%	94	22.3%	7	57.1%	possibly_damaging(0.623)	deleterious(0.04)	deleterious(0.566)	HMMSmart_BTB,superfamily_BTB/POZ_fold
RHOBTB2	23221	genome.wustl.edu	37	8	22865224	22865224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015178.2	+1	validated	p.R489Q	1.000	149	0%	124	25%	19	36.8%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	superfamily_BTB/POZ_fold
RHOBTB2	23221	genome.wustl.edu	37	8	22873176	22873176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015178.2	+1	validated	p.D629G	0.999	161	0%	169	18.3%	11	45.4%	benign(0.001)	tolerated(0.1)	neutral(0.286)	NULL
TNFRSF10C	8794	genome.wustl.edu	37	8	22960665	22960665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003841.2	+1	reviewed	p.V11I	0.128	49	0%	31	16.1%	1	0%	probably_damaging(0.965)	-	-	NULL
ENTPD4	9583	genome.wustl.edu	37	8	23294507	23294507	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004901.3	-1	validated	p.T438	0.786	232	0%	171	23.4%	8	62.5%	-	-	-	HMMPfam_GDA1_CD39
ENTPD4	9583	genome.wustl.edu	37	8	23305332	23305332	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004901.3	-1	validated	p.I91	0.004	424	0%	295	22.4%	5	20%	-	-	-	HMMPfam_GDA1_CD39
STC1	6781	genome.wustl.edu	37	8	23708988	23708988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003155.2	-1	reviewed	p.K106N	1.000	378	0%	251	22.7%	16	68.7%	possibly_damaging(0.893)	deleterious(0.01)	deleterious(0.758)	HMMPfam_Stanniocalcin
ADAM28	10863	genome.wustl.edu	37	8	24171052	24171052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014265.4	+1	reviewed	p.D179N	0.000	431	0%	152	20.4%	5	40%	benign(0.002)	tolerated(0.08)	neutral(0.300)	NULL
ADAM28	10863	genome.wustl.edu	37	8	24199270	24199270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014265.4	+1	reviewed	p.K610N	0.997	428	0.5%	144	19.4%	36	44.4%	possibly_damaging(0.574)	deleterious(0.01)	deleterious(0.603)	HMMSmart_SM00608
ADAM7	8756	genome.wustl.edu	37	8	24349556	24349556	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000380789	+1	known	p.C499	1.000	195	0%	38	18.4%	0	-	-	-	-	HMMPfam_ADAM_CR,HMMSmart_SM00608
NEFM	4741	genome.wustl.edu	37	8	24774752	24774752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005382.2	+1	reviewed	p.V462L	1.000	280	0%	281	21%	0	-	unknown(0)	deleterious(0.01)	-	NULL
NEFM	4741	genome.wustl.edu	37	8	24775100	24775100	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005382.2	+1	reviewed	p.E578*	0.898	264	0%	233	21.9%	0	-	-	-	-	NULL
DOCK5	80005	genome.wustl.edu	37	8	25198418	25198418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024940.6	+1	validated	p.D785Y	1.000	614	0%	333	18.6%	1	0%	benign(0.364)	deleterious(0.04)	neutral(0.465)	NULL
DOCK5	80005	genome.wustl.edu	37	8	25234867	25234867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024940.6	+1	validated	p.Y1288C	1.000	443	0%	137	21.2%	2	0%	probably_damaging(0.974)	tolerated(0.17)	deleterious(0.475)	NULL
PPP2R2A	5520	genome.wustl.edu	37	8	26196503	26196503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002717.3	+1	reviewed	p.E60D	1.000	289	0%	154	18.8%	13	7.6%	benign(0)	tolerated(0.8)	neutral(0.001)	superfamily_WD40 repeat-like
PPP2R2A	5520	genome.wustl.edu	37	8	26221334	26221334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002717.3	+1	reviewed	p.M300I	1.000	448	0%	232	25.4%	25	28%	benign(0)	tolerated(1)	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
ADRA1A	148	genome.wustl.edu	37	8	26722336	26722336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033303.3	-1	reviewed	p.V51I	1.000	184	0%	222	26.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
PTK2B	2185	genome.wustl.edu	37	8	27279872	27279872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004103.3	+1	reviewed	p.A175T	1.000	65	0%	37	13.5%	6	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
PTK2B	2185	genome.wustl.edu	37	8	27311788	27311788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004103.3	+1	reviewed	p.G905S	1.000	333	0%	183	25.1%	32	28.1%	benign(0.121)	tolerated(0.13)	neutral(0.262)	HMMPfam_Focal_AT,superfamily_FAT domain of focal adhesion kinase
CHRNA2	1135	genome.wustl.edu	37	8	27321012	27321012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000742.3	-1	reviewed	p.E316D	1.000	464	0%	264	22%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
CLU	1191	genome.wustl.edu	37	8	27457434	27457434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001831.2	-1	reviewed	p.E395K	0.740	211	0.5%	142	21.1%	218	43.5%	benign(0.035)	tolerated(0.28)	neutral(0.034)	HMMPfam_Clusterin,HMMSmart_CLa
SCARA3	51435	genome.wustl.edu	37	8	27509111	27509111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016240.2	+1	reviewed	p.L65F	1.000	152	0%	119	19.3%	7	57.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ESCO2	157570	genome.wustl.edu	37	8	27634592	27634592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017420.2	+1	reviewed	p.A256V	0.015	124	0%	131	20.6%	2	100%	benign(0.002)	tolerated(0.08)	neutral(0.300)	NULL
SCARA5	286133	genome.wustl.edu	37	8	27737093	27737093	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173833.4	-1	provisional	p.F448	0.961	121	0%	89	28.1%	0	-	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
C8orf80	389643	genome.wustl.edu	37	8	27927837	27927837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010906.1	-1	provisional	p.R27I	0.802	394	0%	185	20.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FZD3	7976	genome.wustl.edu	37	8	28378264	28378264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017412.2	+1	reviewed	p.R100H	1.000	535	0%	192	16.7%	9	33.3%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	superfamily_Frizzled cysteine-rich domain,HMMPfam_Fz,HMMSmart_SM00063
KIF13B	23303	genome.wustl.edu	37	8	29005030	29005030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015254.3	-1	validated	p.H635Y	0.164	327	0%	102	19.6%	14	64.2%	benign(0.067)	deleterious(0.03)	neutral(0.369)	NULL
KIF13B	23303	genome.wustl.edu	37	8	29007848	29007848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015254.3	-1	validated	p.D530N	1.000	502	0.2%	160	20.6%	8	37.5%	probably_damaging(1)	tolerated(0.78)	deleterious(0.501)	HMMPfam_FHA,superfamily_SMAD/FHA domain
DUSP4	1846	genome.wustl.edu	37	8	29194615	29194615	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001394.5	-1	reviewed	p.S371	0.107	52	0%	33	33.3%	77	46.7%	-	-	-	NULL
DUSP4	1846	genome.wustl.edu	37	8	29194753	29194753	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001394.5	-1	reviewed	p.G325	0.996	39	0%	28	14.3%	118	35.5%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
MBOAT4	619373	genome.wustl.edu	37	8	29989718	29989718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001100916.1	-1	validated	p.C350Y	0.983	177	0%	68	20.6%	0	-	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	HMMPfam_MBOAT
PPP2CB	5516	genome.wustl.edu	37	8	30651524	30651524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009552.1	-1	reviewed	p.A216V	1.000	151	0%	54	20.4%	162	40.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
PPP2CB	5516	genome.wustl.edu	37	8	30651555	30651555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009552.1	-1	reviewed	p.R206C	1.000	164	0%	63	22.2%	117	41%	benign(0.081)	deleterious(0)	neutral(0.451)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
TEX15	56154	genome.wustl.edu	37	8	30694877	30694877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031271.3	-1	validated	p.V2592M	0.000	224	0%	84	21.4%	0	-	possibly_damaging(0.928)	tolerated(0.09)	deleterious(0.672)	NULL
TEX15	56154	genome.wustl.edu	37	8	30704353	30704353	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031271.3	-1	validated	p.N727	0.000	227	0%	66	21.2%	0	-	-	-	-	NULL
WRN	7486	genome.wustl.edu	37	8	30938675	30938675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000553.4	+1	reviewed	p.V378L	0.000	364	0%	144	19.4%	6	16.6%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
NRG1	3084	genome.wustl.edu	37	8	32613952	32613952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013956.3	+1	reviewed	p.R284W	0.992	234	0%	120	25%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Neuregulin
NRG1	3084	genome.wustl.edu	37	8	32620844	32620844	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013960.3	+1	reviewed	p.G459	1.000	343	0%	93	18.3%	0	-	-	-	-	HMMPfam_Neuregulin
FUT10	84750	genome.wustl.edu	37	8	33310933	33310933	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032664.3	-1	validated	p.L59	0.000	317	0%	115	20%	1	0%	-	-	-	HMMPfam_Glyco_transf_10
TTI2	80185	genome.wustl.edu	37	8	33360984	33360984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102401.1	-1	validated	p.E408K	1.000	508	0%	237	17.7%	43	32.5%	benign(0.249)	tolerated(0.43)	neutral(0.039)	NULL
UNC5D	137970	genome.wustl.edu	37	8	35425654	35425654	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080872.2	+1	validated	p.Q121*	1.000	262	0%	164	16.5%	0	-	-	-	-	superfamily_Immunoglobulin
UNC5D	137970	genome.wustl.edu	37	8	35608255	35608255	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080872.2	+1	validated	p.G697	1.000	443	0%	91	18.7%	0	-	-	-	-	NULL
KCNU1	157855	genome.wustl.edu	37	8	36642000	36642000	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031836.2	+1	validated	p.Q24	0.004	455	0%	204	11.8%	0	-	-	-	-	NULL
KCNU1	157855	genome.wustl.edu	37	8	36780082	36780082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031836.2	+1	validated	p.L891I	0.975	569	0%	211	18.5%	0	-	probably_damaging(0.955)	deleterious(0.01)	deleterious(0.804)	NULL
ERLIN2	11160	genome.wustl.edu	37	8	37607352	37607352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007175.6	+1	validated	p.R180H	1.000	274	0.7%	160	16.9%	19	36.8%	probably_damaging(0.995)	tolerated(0.12)	deleterious(0.718)	HMMPfam_Band_7,HMMSmart_SM00244
ERLIN2	11160	genome.wustl.edu	37	8	37609199	37609199	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007175.6	+1	validated	p.E235	1.000	286	0%	167	19.8%	18	38.8%	-	-	-	NULL
GPR124	25960	genome.wustl.edu	37	8	37687014	37687014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032777.8	+1	validated	p.S164Y	1.000	272	0%	336	19%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
GPR124	25960	genome.wustl.edu	37	8	37693098	37693098	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032777.8	+1	validated	p.Q620	1.000	68	0%	87	34.5%	8	12.5%	-	-	-	NULL
GPR124	25960	genome.wustl.edu	37	8	37693270	37693270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032777.8	+1	validated	p.V678I	1.000	41	2.4%	44	22.7%	4	0%	probably_damaging(0.995)	tolerated(0.25)	deleterious(0.494)	NULL
BRF2	55290	genome.wustl.edu	37	8	37702560	37702560	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018310.2	-1	reviewed	p.S236	0.024	35	0%	36	19.4%	39	41%	-	-	-	superfamily_Cyclin_like
RAB11FIP1	80223	genome.wustl.edu	37	8	37729302	37729302	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002814.2	-1	validated	p.P1006	0.001	118	0%	67	22.4%	4	50%	-	-	-	NULL
RAB11FIP1	80223	genome.wustl.edu	37	8	37729441	37729441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002814.2	-1	validated	p.P960H	0.998	227	0%	102	15.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADRB3	155	genome.wustl.edu	37	8	37823518	37823518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000025.2	-1	reviewed	p.A157V	0.730	24	0%	23	34.8%	0	-	benign(0.199)	tolerated(1)	neutral(0.019)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ASH2L	9070	genome.wustl.edu	37	8	37993267	37993267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004674.3	+1	validated	p.L568M	1.000	285	0%	140	24.3%	38	28.9%	possibly_damaging(0.924)	tolerated(0.07)	deleterious(0.692)	HMMSmart_SM00449
STAR	6770	genome.wustl.edu	37	8	38003855	38003855	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000349.2	-1	reviewed	p.E139	0.023	291	0%	177	27.7%	1	100%	-	-	-	HMMPfam_START,HMMSmart_SM00234,superfamily_Bet v1-like
BAG4	9530	genome.wustl.edu	37	8	38065117	38065117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004874.2	+1	reviewed	p.Y156H	0.940	324	0%	140	22.9%	6	50%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
BAG4	9530	genome.wustl.edu	37	8	38066577	38066577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004874.2	+1	reviewed	p.R227H	0.995	224	0%	107	15%	5	40%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LETM2	137994	genome.wustl.edu	37	8	38260109	38260109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144652.1	+1	provisional	p.G256R	1.000	184	0%	93	21.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LETM1
FGFR1	2260	genome.wustl.edu	37	8	38273433	38273433	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023110.2	-1	reviewed	p.C603	0.729	150	0%	114	17.5%	30	36.6%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
FGFR1	2260	genome.wustl.edu	37	8	38277190	38277190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023110.2	-1	reviewed	p.T382I	0.983	140	0%	116	18.1%	19	26.3%	benign(0)	tolerated(1)	-	NULL
C8orf86	389649	genome.wustl.edu	37	8	38373976	38373976	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207412.1	-1	predicted	p.T124P	0.000	359	0%	186	14%	0	-	unknown(0)	-	-	NULL
HTRA4	203100	genome.wustl.edu	37	8	38834106	38834106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153692.3	+1	reviewed	p.V207L	0.999	435	0%	534	18%	1	0%	possibly_damaging(0.735)	tolerated(0.06)	deleterious(0.591)	HMMPfam_Trypsin,superfamily_Pept_Ser_Cys
ADAM9	8754	genome.wustl.edu	37	8	38959430	38959430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003816.2	+1	reviewed	p.P783S	1.000	165	0%	229	20.5%	71	40.8%	possibly_damaging(0.943)	tolerated(0.23)	neutral(0.429)	NULL
ADAM2	2515	genome.wustl.edu	37	8	39682417	39682417	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001464.3	-1	reviewed	e4-1	0.994	186	0%	68	20.6%	0	-	-	-	-	-
IDO1	3620	genome.wustl.edu	37	8	39782751	39782751	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002164.4	+1	validated	p.G239	0.997	93	0%	55	18.2%	1787	46.7%	-	-	-	HMMPfam_IDO
IDO2	169355	genome.wustl.edu	37	8	39871183	39871183	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194294.2	+1	validated	p.V286	0.998	317	0%	108	17.6%	0	-	-	-	-	HMMPfam_IDO
C8orf4	56892	genome.wustl.edu	37	8	40011218	40011218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020130.3	+1	reviewed	p.G56E	1.000	375	0%	191	19.9%	63	31.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
AGPAT6	137964	genome.wustl.edu	37	8	41466955	41466955	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178819.3	+1	validated	p.E62D	1.000	254	0%	203	16.3%	28	10.7%	possibly_damaging(0.912)	tolerated(0.15)	deleterious(0.605)	NULL
AGPAT6	137964	genome.wustl.edu	37	8	41467224	41467224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178819.3	+1	validated	p.R96C	1.000	181	0%	147	36.1%	23	30.4%	benign(0.386)	deleterious(0.01)	deleterious(0.529)	NULL
ANK1	286	genome.wustl.edu	37	8	41519260	41519260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000415018	-1	known	p.P1893L	0.000	47	0%	52	30.8%	0	-	-	-	-	NULL
ANK1	286	genome.wustl.edu	37	8	41559103	41559103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142446.1	-1	reviewed	p.T842I	1.000	317	0%	306	22.9%	2	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ANK
ANK1	286	genome.wustl.edu	37	8	41583426	41583426	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142446.1	-1	reviewed	p.G188	1.000	24	0%	36	25%	1	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
KAT6A	7994	genome.wustl.edu	37	8	41789991	41789991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099412.1	-1	validated	p.M1916T	1.000	328	0%	337	13.4%	15	20%	possibly_damaging(0.662)	deleterious(0)	deleterious(0.678)	NULL
KAT6A	7994	genome.wustl.edu	37	8	41791265	41791265	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099412.1	-1	validated	p.S1491	1.000	300	0%	276	23.9%	12	50%	-	-	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41795004	41795004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099412.1	-1	validated	p.T1041I	1.000	256	0%	272	25%	5	40%	unknown(0)	deleterious(0)	-	NULL
PLAT	5327	genome.wustl.edu	37	8	42037840	42037840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000930.3	-1	reviewed	p.G381D	0.546	214	0%	195	23.6%	12	0%	benign(0.048)	tolerated(0.33)	neutral(0.027)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
IKBKB	3551	genome.wustl.edu	37	8	42178326	42178326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001556.1	+1	validated	p.P551L	0.999	77	0%	63	20.6%	30	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POLB	5423	genome.wustl.edu	37	8	42226801	42226801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002690.1	+1	provisional	p.L241F	1.000	387	0%	315	14.9%	55	47.2%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMSmart_POLXc,superfamily_SSF81301
SLC20A2	6575	genome.wustl.edu	37	8	42294689	42294689	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006749.3	-1	provisional	p.A447	0.001	46	0%	42	21.4%	16	25%	-	-	-	HMMPfam_PHO4
SLC20A2	6575	genome.wustl.edu	37	8	42329827	42329827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006749.3	-1	provisional	p.D28N	1.000	161	0%	68	22.1%	4	25%	unknown(0)	deleterious(0)	-	HMMPfam_PHO4
C8orf40	114926	genome.wustl.edu	37	8	42401620	42401620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135674.1	+1	validated	p.A2D	1.000	386	0%	425	18.8%	44	40.9%	benign(0.128)	tolerated(0.08)	neutral(0.310)	NULL
CHRNA6	8973	genome.wustl.edu	37	8	42611644	42611644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004198.2	-1	provisional	p.S233Y	1.000	336	0%	133	21.8%	0	-	benign(0.202)	tolerated(0.47)	neutral(0.030)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
THAP1	55145	genome.wustl.edu	37	8	42693285	42693285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018105.2	-1	reviewed	p.Q154H	0.959	443	0%	450	22.7%	12	41.6%	benign(0.203)	deleterious(0.02)	neutral(0.403)	NULL
RNF170	81790	genome.wustl.edu	37	8	42711483	42711483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030954.3	-1	validated	p.R199H	1.000	207	0%	187	16.6%	11	54.5%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
HGSNAT	138050	genome.wustl.edu	37	8	43054626	43054626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152419.2	+1	reviewed	p.H608Y	0.996	159	0%	113	11.5%	33	30.3%	benign(0.002)	tolerated(1)	-	NULL
ENSG00000252594	0	genome.wustl.edu	37	8	47742674	47742674	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000516785	+1	novel	NULL	0.996	163	0%	54	13%	0	-	-	-	-	-
ENSG00000200986	0	genome.wustl.edu	37	8	48043439	48043439	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000364116	-1	novel	NULL	0.000	33	0%	39	28.2%	0	-	-	-	-	-
KIAA0146	23514	genome.wustl.edu	37	8	48352938	48352938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080394.1	+1	predicted	p.A311T	0.256	244	0%	88	17%	25	32%	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
PRKDC	5591	genome.wustl.edu	37	8	48715964	48715964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000314191	-1	known	p.S3274R	0.010	81	0%	33	15.2%	11	63.6%	benign(0)	tolerated(0.79)	neutral(0.001)	HMMPfam_FAT
PRKDC	5591	genome.wustl.edu	37	8	48719860	48719860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000314191	-1	known	p.E3194D	0.999	430	0%	208	22.1%	9	66.6%	benign(0.015)	tolerated(0.44)	neutral(0.013)	HMMPfam_FAT
PRKDC	5591	genome.wustl.edu	37	8	48765343	48765343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000314191	-1	known	p.Y2298C	1.000	322	0%	169	19.5%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
PRKDC	5591	genome.wustl.edu	37	8	48777302	48777302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000314191	-1	known	p.G1795S	0.000	135	0%	55	23.6%	3	33.3%	benign(0.069)	tolerated(0.73)	neutral(0.006)	superfamily_ARM repeat
PRKDC	5591	genome.wustl.edu	37	8	48798619	48798619	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001081640.1	-1	validated	p.P1554H	0.998	193	1%	102	11.8%	2	0%	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48811031	48811031	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000314191	-1	known	p.R1155*	0.962	290	0%	180	18.9%	0	-	-	-	-	superfamily_ARM repeat
PRKDC	5591	genome.wustl.edu	37	8	48848994	48848994	+	Silent	SNP	C	C	T	rs55910075		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000314191	-1	known	p.Q399	1.000	274	0%	143	18.9%	1	0%	-	-	-	superfamily_ARM repeat
MCM4	4173	genome.wustl.edu	37	8	48885491	48885491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005914.2	+1	reviewed	p.A668V	0.138	194	0%	149	16.8%	59	10.1%	benign(0.11)	deleterious(0.01)	neutral(0.414)	HMMPfam_MCM,HMMSmart_MCM,superfamily_SSF52540
UBE2V2	7336	genome.wustl.edu	37	8	48955608	48955608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003350.2	+1	reviewed	p.R11H	1.000	264	0%	102	23.5%	33	36.3%	benign(0.002)	deleterious(0.02)	neutral(0.383)	superfamily_UBC-like
LOC644334	644334	genome.wustl.edu	37	8	49826712	49826712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_927497.4	+1	model	p.E151K	0.994	201	0.5%	168	19%	0	-	-	-	-	HMMPfam_FERM_N,superfamily_Ubiquitin-like
PXDNL	137902	genome.wustl.edu	37	8	52232513	52232513	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144651.4	-1	validated	p.G1444*	0.029	177	0%	63	20.6%	0	-	-	-	-	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1
PXDNL	137902	genome.wustl.edu	37	8	52469440	52469440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144651.4	-1	validated	p.D114Y	0.023	305	0%	91	22%	0	-	possibly_damaging(0.637)	deleterious(0.02)	deleterious(0.606)	HMMSmart_SM00369,superfamily_L domain-like
RB1CC1	9821	genome.wustl.edu	37	8	53573746	53573746	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014781.4	-1	reviewed	p.I485S	1.000	220	0%	97	15.5%	7	57.1%	benign(0.039)	deleterious(0)	neutral(0.447)	NULL
OPRK1	4986	genome.wustl.edu	37	8	54142009	54142009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000912.3	-1	validated	p.A331T	1.000	204	0%	78	23.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81321
RGS20	8601	genome.wustl.edu	37	8	54870965	54870965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170587.2	+1	validated	p.A372T	0.787	197	0%	134	21.6%	1	0%	benign(0.002)	tolerated(0.55)	neutral(0.007)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
RP1	6101	genome.wustl.edu	37	8	55534751	55534751	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006269.1	+1	reviewed	p.G230	1.000	256	0%	355	21.7%	1	0%	-	-	-	HMMSmart_DCX,superfamily_SSF89837
RP1	6101	genome.wustl.edu	37	8	55537632	55537632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006269.1	+1	reviewed	p.S397I	0.000	279	0%	232	26.7%	0	-	possibly_damaging(0.507)	deleterious(0)	deleterious(0.614)	NULL
RP1	6101	genome.wustl.edu	37	8	55541781	55541781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006269.1	+1	reviewed	p.S1780N	0.993	238	0%	176	17.6%	0	-	possibly_damaging(0.807)	deleterious(0.03)	deleterious(0.668)	NULL
XKR4	114786	genome.wustl.edu	37	8	56270407	56270407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052898.1	+1	provisional	p.V326I	1.000	368	0%	228	22.8%	1	0%	benign(0.005)	tolerated(1)	-	HMMPfam_XK-related
XKR4	114786	genome.wustl.edu	37	8	56436592	56436592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052898.1	+1	provisional	p.P587T	1.000	183	0%	129	13.2%	0	-	possibly_damaging(0.951)	tolerated(0.15)	deleterious(0.635)	NULL
TMEM68	137695	genome.wustl.edu	37	8	56675382	56675382	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152417.1	-1	provisional	p.W46*	1.000	288	0%	178	28.7%	7	28.5%	-	-	-	NULL
TMEM68	137695	genome.wustl.edu	37	8	56675478	56675478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152417.1	-1	provisional	p.S14F	0.553	209	0%	155	29.7%	12	25%	benign(0.131)	deleterious(0)	neutral(0.456)	NULL
TGS1	96764	genome.wustl.edu	37	8	56686232	56686232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024831.6	+1	validated	p.R19W	0.973	261	0.4%	235	18.3%	8	12.5%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
LYN	4067	genome.wustl.edu	37	8	56863239	56863239	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002350.2	+1	validated	e5-1	1.000	352	0.3%	192	20.3%	4	100%	-	-	-	-
LYN	4067	genome.wustl.edu	37	8	56882348	56882348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002350.2	+1	validated	p.A349D	1.000	327	0%	138	23.9%	40	17.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
CHCHD7	79145	genome.wustl.edu	37	8	57127226	57127226	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001011668.1	+1	validated	p.S43	0.998	494	0%	735	23.3%	40	0%	-	-	-	NULL
PENK	5179	genome.wustl.edu	37	8	57353921	57353921	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135690.1	-1	validated	p.A238	0.003	104	0%	195	23.6%	0	-	-	-	-	NULL
PENK	5179	genome.wustl.edu	37	8	57354390	57354390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135690.1	-1	validated	p.S82I	0.000	141	0%	240	23.7%	0	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
IMPAD1	54928	genome.wustl.edu	37	8	57878871	57878871	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017813.3	-1	validated	p.R229	0.041	159	0%	57	17.5%	28	17.8%	-	-	-	HMMPfam_Inositol_P,superfamily_SSF56655
UBXN2B	137886	genome.wustl.edu	37	8	59345764	59345764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077619.1	+1	validated	p.R129W	0.596	613	0%	444	22.7%	4	0%	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	NULL
CYP7A1	1581	genome.wustl.edu	37	8	59410964	59410964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000780.3	-1	reviewed	p.G49S	1.000	193	0%	143	22.4%	0	-	benign(0.263)	tolerated(0.46)	neutral(0.040)	HMMPfam_p450,superfamily_Cytochrome_P450
TOX	9760	genome.wustl.edu	37	8	59750721	59750721	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014729.2	-1	reviewed	p.G281	1.000	296	0%	87	14.9%	7	0%	-	-	-	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
TOX	9760	genome.wustl.edu	37	8	59764097	59764097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014729.2	-1	reviewed	p.D227N	1.000	305	0%	61	24.6%	8	0%	benign(0.108)	deleterious(0)	neutral(0.453)	NULL
RAB2A	5862	genome.wustl.edu	37	8	61471481	61471481	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002865.1	+1	provisional	p.I39M	1.000	421	0%	324	11.7%	135	25.9%	possibly_damaging(0.852)	deleterious(0)	deleterious(0.772)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD7	55636	genome.wustl.edu	37	8	61654283	61654283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017780.2	+1	reviewed	p.L98I	0.999	138	0%	117	34.2%	0	-	benign(0.158)	tolerated(0.28)	neutral(0.045)	NULL
CHD7	55636	genome.wustl.edu	37	8	61765088	61765088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017780.2	+1	reviewed	p.R1976C	1.000	223	0%	101	20.8%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHD7	55636	genome.wustl.edu	37	8	61769324	61769324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017780.2	+1	reviewed	p.R2495S	1.000	252	0%	138	18.1%	8	37.5%	possibly_damaging(0.813)	tolerated(0.16)	neutral(0.366)	NULL
CHD7	55636	genome.wustl.edu	37	8	61773592	61773592	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017780.2	+1	reviewed	p.L2580	1.000	229	0%	177	15.8%	3	33.3%	-	-	-	HMMPfam_BRK,HMMSmart_SM00592
CHD7	55636	genome.wustl.edu	37	8	61777743	61777743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017780.2	+1	reviewed	p.L2749M	1.000	68	0%	54	18.5%	8	25%	probably_damaging(0.962)	deleterious(0.04)	deleterious(0.754)	NULL
ASPH	444	genome.wustl.edu	37	8	62577965	62577965	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020164.4	-1	reviewed	p.S175R	0.037	937	0%	405	11.4%	0	-	possibly_damaging(0.913)	deleterious(0.02)	deleterious(0.748)	HMMPfam_Asp-B-Hydro_N
ENSG00000237810	0	genome.wustl.edu	37	8	63057061	63057061	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000433538	-1	known	p.E58	1.000	42	0%	67	14.9%	0	-	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CYP7B1	9420	genome.wustl.edu	37	8	65527638	65527638	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004820.3	-1	reviewed	p.G334	0.980	379	0%	177	22%	1	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP7B1	9420	genome.wustl.edu	37	8	65528478	65528478	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004820.3	-1	reviewed	p.K207T	0.359	207	0%	97	22.7%	0	-	benign(0.002)	tolerated(0.33)	neutral(0.024)	superfamily_Cytochrome P450
PDE7A	5150	genome.wustl.edu	37	8	66637059	66637059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002603.2	-1	validated	p.G314S	1.000	283	0%	96	15.6%	7	28.5%	benign(0.001)	tolerated(0.09)	neutral(0.296)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
VCPIP1	80124	genome.wustl.edu	37	8	67546968	67546968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025054.4	-1	validated	p.S1146F	1.000	173	0%	90	16.7%	7	0%	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	NULL
VCPIP1	80124	genome.wustl.edu	37	8	67576599	67576599	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025054.4	-1	validated	p.S865	0.978	281	0%	298	19.8%	13	46.1%	-	-	-	NULL
C8orf45	157777	genome.wustl.edu	37	8	67808441	67808441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173518.4	+1	validated	p.G439V	1.000	578	0%	235	22.1%	0	-	possibly_damaging(0.931)	deleterious(0.03)	deleterious(0.742)	HMMSmart_SM00350
C8orf45	157777	genome.wustl.edu	37	8	67813458	67813458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173518.4	+1	validated	p.K548N	1.000	175	0%	90	25.6%	1	100%	benign(0.113)	tolerated(0.14)	neutral(0.259)	HMMSmart_SM00350
C8orf45	157777	genome.wustl.edu	37	8	67817534	67817534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173518.4	+1	validated	p.A615S	1.000	298	0%	125	19.2%	0	-	benign(0.079)	deleterious(0.02)	neutral(0.389)	HMMPfam_MCM,HMMSmart_SM00350
CSPP1	79848	genome.wustl.edu	37	8	68074128	68074128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077204.1	+1	validated	p.S904I	1.000	633	0.2%	627	10.2%	7	28.5%	possibly_damaging(0.885)	deleterious(0.04)	deleterious(0.695)	NULL
CPA6	57094	genome.wustl.edu	37	8	68340347	68340347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020361.4	-1	validated	p.A354D	1.000	261	0%	124	22.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
PREX2	80243	genome.wustl.edu	37	8	69009279	69009279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024870.2	+1	validated	p.A799V	1.000	205	0%	60	28.3%	10	20%	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
SULF1	23213	genome.wustl.edu	37	8	70515886	70515886	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128204.1	+1	validated	p.E414D	1.000	321	0%	140	27.1%	13	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_Alkaline_phosphatase_core
SULF1	23213	genome.wustl.edu	37	8	70540406	70540406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128204.1	+1	validated	p.S681R	1.000	160	0%	229	24.9%	11	0%	benign(0.009)	deleterious(0.01)	neutral(0.406)	superfamily_Alkaline_phosphatase_core
SLCO5A1	81796	genome.wustl.edu	37	8	70744145	70744145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030958.2	-1	reviewed	p.S255L	0.991	148	0%	160	22.5%	1	100%	possibly_damaging(0.895)	tolerated(0.14)	deleterious(0.603)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
PRDM14	63978	genome.wustl.edu	37	8	70971040	70971040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024504.2	-1	validated	p.K407N	0.980	363	0%	225	20%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2
XKR9	389668	genome.wustl.edu	37	8	71646414	71646414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001011720.1	+1	provisional	p.V293I	0.010	393	0%	229	18.8%	0	-	benign(0.051)	tolerated(0.61)	neutral(0.007)	HMMPfam_XK-related
XKR9	389668	genome.wustl.edu	37	8	71646502	71646502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001011720.1	+1	provisional	p.S322I	0.000	363	0%	187	24.6%	0	-	benign(0.094)	tolerated(0.27)	neutral(0.041)	HMMPfam_XK-related
EYA1	2138	genome.wustl.edu	37	8	72129070	72129070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000503.4	-1	reviewed	p.T406I	1.000	398	0%	92	18.5%	0	-	benign(0.108)	deleterious(0)	neutral(0.453)	HMMPfam_Hydrolase
LOC392232	392232	genome.wustl.edu	37	8	73142409	73142409	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_037363.2	-1	model	NULL	0.752	254	0%	139	14.4%	0	-	-	-	-	-
LOC392232	392232	genome.wustl.edu	37	8	73157302	73157302	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_037363.2	-1	model	NULL	0.003	93	0%	62	14.5%	0	-	-	-	-	-
RDH10	157506	genome.wustl.edu	37	8	74231399	74231399	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172037.3	+1	validated	p.S198	0.996	507	0%	192	14.1%	38	57.8%	-	-	-	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains
UBE2W	55284	genome.wustl.edu	37	8	74706344	74706344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001481.1	-1	validated	p.T161N	1.000	404	0%	129	20.2%	5	40%	benign(0.004)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00212
JPH1	56704	genome.wustl.edu	37	8	75233339	75233339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020647.2	-1	reviewed	p.G62S	1.000	70	0%	57	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
GDAP1	54332	genome.wustl.edu	37	8	75263540	75263540	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018972.2	+1	reviewed	p.K50T	1.000	476	0%	422	22%	0	-	probably_damaging(0.957)	tolerated(0.54)	neutral(0.408)	HMMPfam_GST_N,superfamily_Thioredoxin-like
GDAP1	54332	genome.wustl.edu	37	8	75275246	75275246	+	Nonsense_Mutation	SNP	C	C	T	rs121908113		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018972.2	+1	reviewed	p.Q218*	1.000	288	0%	283	23%	1	0%	-	-	-	HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain
PI15	51050	genome.wustl.edu	37	8	75757649	75757649	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015886.3	+1	reviewed	p.C186	1.000	373	0%	128	19.5%	2	0%	-	-	-	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular
HNF4G	3174	genome.wustl.edu	37	8	76470813	76470813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004133.4	+1	validated	p.R255H	0.999	259	0%	79	21.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
ZFHX4	79776	genome.wustl.edu	37	8	77617432	77617432	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024721.4	+1	validated	p.E370A	1.000	312	0%	245	17.6%	0	-	benign(0.076)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77620289	77620289	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000458716	+1	known	p.S1007	0.986	89	0%	69	13%	0	-	-	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77764027	77764027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024721.4	+1	validated	p.A1579T	1.000	114	0%	62	16.1%	0	-	benign(0.135)	-	-	HMMSmart_SM00451
ZFHX4	79776	genome.wustl.edu	37	8	77767241	77767241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024721.4	+1	validated	p.R2650H	1.000	150	0%	67	23.9%	0	-	probably_damaging(0.999)	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFHX4	79776	genome.wustl.edu	37	8	77768344	77768344	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024721.4	+1	validated	p.E3018*	1.000	98	0%	26	30.8%	0	-	-	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77776174	77776174	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024721.4	+1	validated	p.C3363*	1.000	172	0%	65	20%	0	-	-	-	-	HMMSmart_SM00355
PEX2	5828	genome.wustl.edu	37	8	77896103	77896103	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000318.2	-1	reviewed	p.I104	0.057	132	0%	87	28.7%	31	41.9%	-	-	-	HMMPfam_Pex2_Pex12
PKIA	5569	genome.wustl.edu	37	8	79510711	79510711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006823.2	+1	reviewed	p.A31V	1.000	295	0%	53	17%	1	0%	benign(0.005)	tolerated(0.06)	neutral(0.323)	HMMPfam_PKI
ZC2HC1A	51101	genome.wustl.edu	37	8	79629651	79629651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016010.2	+1	validated	p.H301Y	1.000	355	0%	201	18.9%	10	20%	benign(0.084)	deleterious(0.01)	neutral(0.412)	NULL
SNX16	64089	genome.wustl.edu	37	8	82752169	82752169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022133.3	-1	reviewed	p.S18I	0.996	216	0%	277	24.9%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RALYL	138046	genome.wustl.edu	37	8	85799838	85799838	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001100391.1	+1	validated	e8-1	1.000	268	0%	108	11.1%	0	-	-	-	-	-
LRRCC1	85444	genome.wustl.edu	37	8	86035667	86035667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033402.4	+1	validated	p.N317S	0.003	97	0%	103	25.2%	3	33.3%	probably_damaging(0.987)	tolerated(0.41)	neutral(0.452)	NULL
LRRCC1	85444	genome.wustl.edu	37	8	86042232	86042232	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033402.4	+1	validated	p.R569*	1.000	210	0%	185	22.7%	3	0%	-	-	-	NULL
LRRCC1	85444	genome.wustl.edu	37	8	86049702	86049702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033402.4	+1	validated	p.S778Y	0.024	186	0%	103	20.4%	8	25%	possibly_damaging(0.491)	deleterious(0.03)	deleterious(0.528)	NULL
CA13	377677	genome.wustl.edu	37	8	86178874	86178874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198584.2	+1	validated	p.S131N	1.000	517	0.2%	310	15.8%	1	0%	benign(0.126)	tolerated(0.19)	neutral(0.060)	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
ATP6V0D2	245972	genome.wustl.edu	37	8	87125998	87125998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152565.1	+1	validated	p.P64H	1.000	366	0.3%	93	17.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_vATP-synt_AC39,superfamily_ATPase_V0/A0_c/d
FAM82B	51115	genome.wustl.edu	37	8	87500781	87500781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016033.2	-1	validated	p.S112I	1.000	464	0%	460	23%	47	0%	probably_damaging(0.953)	deleterious(0.04)	deleterious(0.746)	superfamily_Prenyl_trans
CNGB3	54714	genome.wustl.edu	37	8	87588334	87588334	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019098.4	-1	reviewed	p.E710*	0.002	332	0.9%	142	19%	0	-	-	-	-	NULL
CNBD1	168975	genome.wustl.edu	37	8	87951977	87951977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173538.2	+1	provisional	p.K142N	1.000	129	0%	34	17.6%	0	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	NULL
CNBD1	168975	genome.wustl.edu	37	8	88365863	88365863	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173538.2	+1	provisional	e10-1	1.000	129	0%	49	24.5%	0	-	-	-	-	-
CNBD1	168975	genome.wustl.edu	37	8	88365987	88365987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173538.2	+1	provisional	p.A426S	0.910	245	0%	84	19%	0	-	possibly_damaging(0.945)	tolerated(0.14)	deleterious(0.639)	HMMPfam_cNMP_binding,superfamily_cNMP_binding
DCAF4L2	138009	genome.wustl.edu	37	8	88885325	88885325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152418.3	-1	validated	p.G292V	1.000	196	0%	113	20.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
MMP16	4325	genome.wustl.edu	37	8	89081701	89081701	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022564.3	-1	reviewed	p.Y424*	0.000	440	0.2%	109	12.8%	0	-	-	-	-	NULL
MMP16	4325	genome.wustl.edu	37	8	89198754	89198754	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005941.4	-1	reviewed	p.R119*	1.000	394	0.3%	184	18.5%	1	0%	-	-	-	NULL
MMP16	4325	genome.wustl.edu	37	8	89198763	89198763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005941.4	-1	reviewed	p.R116C	0.999	368	0%	172	20.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RIPK2	8767	genome.wustl.edu	37	8	90775161	90775161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003821.5	+1	reviewed	p.I93T	1.000	355	0%	355	16.6%	39	48.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
OSGIN2	734	genome.wustl.edu	37	8	90937282	90937282	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001126111.1	+1	validated	p.K391I	1.000	208	0%	66	18.2%	37	45.9%	probably_damaging(0.953)	tolerated(0.08)	deleterious(0.697)	superfamily_FAD/NAD(P)-binding domain
NECAB1	64168	genome.wustl.edu	37	8	91893337	91893337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022351.4	+1	validated	p.K112N	1.000	177	0%	184	17.9%	0	-	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	superfamily_EF-hand
TMEM55A	55529	genome.wustl.edu	37	8	92033485	92033485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018710.2	-1	validated	p.T85M	1.000	161	0.6%	67	19.4%	7	28.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Tmemb_55A
SLC26A7	115111	genome.wustl.edu	37	8	92364090	92364090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134266.1	+1	reviewed	p.G398V	1.000	611	0%	172	18%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_Sulfate_transp
SLC26A7	115111	genome.wustl.edu	37	8	92378897	92378897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134266.1	+1	reviewed	p.M526I	0.988	170	0%	92	14.1%	0	-	benign(0)	tolerated(0.67)	neutral(0.003)	HMMPfam_STAS,superfamily_STAS
RUNX1T1	862	genome.wustl.edu	37	8	92999161	92999161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175634.1	-1	reviewed	p.R344I	1.000	590	0.2%	237	24.9%	1	0%	possibly_damaging(0.609)	tolerated(0.1)	deleterious(0.497)	HMMPfam_NHR2
RBM12B	389677	genome.wustl.edu	37	8	94747537	94747537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203390.2	-1	validated	p.A368T	1.000	192	0%	230	24.8%	6	33.3%	benign(0.055)	tolerated(0.19)	neutral(0.053)	NULL
TMEM67	91147	genome.wustl.edu	37	8	94793161	94793161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153704.5	+1	reviewed	p.L310P	1.000	267	0%	139	16.5%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Meckelin
PDP1	54704	genome.wustl.edu	37	8	94934569	94934569	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018444.3	+1	reviewed	p.Y94	1.000	437	0%	373	20.1%	3	33.3%	-	-	-	superfamily_Protein serine/threonine phosphatase 2C catalytic domain
CDH17	1015	genome.wustl.edu	37	8	95164126	95164126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144663.1	-1	reviewed	p.T589N	0.996	286	0%	70	24.3%	0	-	benign(0.322)	tolerated(0.44)	neutral(0.114)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
GEM	2669	genome.wustl.edu	37	8	95262626	95262626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005261.3	-1	reviewed	p.R268H	1.000	140	0%	88	26.1%	19	5.2%	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	NULL
GEM	2669	genome.wustl.edu	37	8	95264271	95264271	+	Missense_Mutation	SNP	G	G	A	rs187593880	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005261.3	-1	reviewed	p.R197W	1.000	151	0%	90	20%	14	7.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD54B	25788	genome.wustl.edu	37	8	95390843	95390843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012415.2	-1	reviewed	p.R756I	1.000	384	0.3%	361	21.1%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
RAD54B	25788	genome.wustl.edu	37	8	95423377	95423377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012415.2	-1	reviewed	p.K157N	1.000	429	0%	126	19%	1	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_SSF52540
KIAA1429	25962	genome.wustl.edu	37	8	95500995	95500995	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000442835	-1	known	p.E1756*	0.998	327	0%	171	21.1%	78	46.1%	possibly_damaging(0.811)	tolerated(0.28)	neutral(0.337)	NULL
ESRP1	54845	genome.wustl.edu	37	8	95658438	95658438	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017697.3	+1	validated	p.R140*	1.000	466	0%	385	21.6%	7	42.8%	-	-	-	NULL
ESRP1	54845	genome.wustl.edu	37	8	95677286	95677286	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017697.3	+1	validated	p.E296V	1.000	426	0%	137	22.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ESRP1	54845	genome.wustl.edu	37	8	95680439	95680439	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017697.3	+1	validated	p.Y398*	1.000	199	0%	65	29.2%	2	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ESRP1	54845	genome.wustl.edu	37	8	95686698	95686698	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017697.3	+1	validated	p.R539*	1.000	283	0%	106	18.9%	10	60%	-	-	-	NULL
ESRP1	54845	genome.wustl.edu	37	8	95690544	95690544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017697.3	+1	validated	p.A589T	0.911	426	0%	120	25%	8	50%	benign(0.009)	tolerated(0.34)	neutral(0.024)	NULL
INTS8	55656	genome.wustl.edu	37	8	95850847	95850847	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017864.2	+1	provisional	e8+1	1.000	339	0%	172	15.7%	0	-	-	-	-	-
GDF6	392255	genome.wustl.edu	37	8	97172538	97172538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001557.2	-1	reviewed	p.T128I	1.000	125	0%	154	23.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TGFb_propeptide
GDF6	392255	genome.wustl.edu	37	8	97172711	97172711	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001557.2	-1	reviewed	p.R70	0.016	15	0.000	8	0.500	0	-	-	-	-	NULL
PTDSS1	9791	genome.wustl.edu	37	8	97274404	97274404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014754.1	+1	provisional	p.L46F	1.000	92	0%	119	22.7%	48	45.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TSPYL5	85453	genome.wustl.edu	37	8	98289417	98289417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033512.2	-1	validated	p.A219V	0.974	125	0%	188	23.4%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_NAP
MTDH	92140	genome.wustl.edu	37	8	98703282	98703282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178812.3	+1	validated	p.N305S	0.999	331	0%	116	24.1%	19	31.5%	benign(0.224)	tolerated(0.4)	neutral(0.038)	NULL
LAPTM4B	55353	genome.wustl.edu	37	8	98828401	98828401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018407.4	+1	validated	p.R225Q	0.987	447	0%	213	21.6%	507	45.9%	benign(0.396)	tolerated(0.55)	neutral(0.134)	HMMPfam_Mtp
MATN2	4147	genome.wustl.edu	37	8	99006816	99006816	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002380.3	+1	reviewed	p.K397T	0.998	315	0%	114	14.9%	10	60%	benign(0.229)	tolerated(0.11)	neutral(0.295)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
POP1	10940	genome.wustl.edu	37	8	99146260	99146260	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015029.2	+1	reviewed	p.D273	0.973	572	0.2%	272	20.2%	1	0%	-	-	-	NULL
KCNS2	3788	genome.wustl.edu	37	8	99440687	99440687	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020697.2	+1	provisional	p.K160	1.000	72	0%	123	17.1%	0	-	-	-	-	NULL
STK3	6788	genome.wustl.edu	37	8	99468164	99468164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006281.2	-1	validated	p.R461Q	1.000	591	0%	192	21.4%	11	27.2%	benign(0.026)	tolerated(0.87)	neutral(0.002)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100133593	100133593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017890.3	+1	reviewed	p.H376Y	0.904	333	0%	137	19.7%	1	100%	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100147911	100147911	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017890.3	+1	reviewed	p.E505*	1.000	508	0%	241	20.3%	1	0%	-	-	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100712157	100712157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017890.3	+1	reviewed	p.P2176S	0.987	131	0%	85	20%	0	-	benign(0.013)	tolerated(0.41)	neutral(0.015)	NULL
COX6C	1345	genome.wustl.edu	37	8	100904136	100904136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004374.2	-1	reviewed	p.K38N	1.000	126	0%	155	13.5%	773	13.4%	possibly_damaging(0.849)	deleterious(0.03)	deleterious(0.691)	HMMPfam_COX6C,superfamily_Mitochondrial cytochrome c oxidase subunit VIc
COX6C	1345	genome.wustl.edu	37	8	100904212	100904212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004374.2	-1	reviewed	p.G13D	1.000	119	0%	144	33.3%	773	35.1%	benign(0.336)	deleterious(0.04)	neutral(0.455)	HMMPfam_COX6C,superfamily_Mitochondrial cytochrome c oxidase subunit VIc
RGS22	26166	genome.wustl.edu	37	8	101075757	101075757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015668.3	-1	validated	p.K413N	0.991	484	0%	335	11%	0	-	possibly_damaging(0.909)	deleterious(0.02)	deleterious(0.745)	superfamily_Regulator of G-protein signaling RGS
SPAG1	6674	genome.wustl.edu	37	8	101174629	101174629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003114.3	+1	reviewed	p.K41E	1.000	103	0%	154	26.6%	2	50%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
RNF19A	25897	genome.wustl.edu	37	8	101276385	101276385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015435.3	-1	reviewed	p.V449I	1.000	370	0%	136	27.2%	21	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
RNF19A	25897	genome.wustl.edu	37	8	101287351	101287351	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015435.3	-1	reviewed	p.K238T	1.000	145	0%	55	27.3%	8	37.5%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_IBR,HMMSmart_SM00647,superfamily_RING/U-box
SNX31	169166	genome.wustl.edu	37	8	101648223	101648223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152628.3	-1	validated	p.G53V	0.996	199	0%	142	23.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
PABPC1	26986	genome.wustl.edu	37	8	101717249	101717249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002568.3	-1	validated	p.P575T	1.000	372	0%	179	19.6%	1342	34.5%	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMPfam_PABP,HMMSmart_SM00517,superfamily_PABC (PABP) domain
GRHL2	79977	genome.wustl.edu	37	8	102570909	102570909	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024915.3	+1	reviewed	p.R183*	0.983	111	0%	61	26.2%	2	50%	-	-	-	NULL
UBR5	51366	genome.wustl.edu	37	8	103283451	103283451	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015902.4	-1	reviewed	p.N2332	1.000	676	0%	340	14.1%	18	22.2%	-	-	-	superfamily_HECT
UBR5	51366	genome.wustl.edu	37	8	103284937	103284937	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015902.4	-1	reviewed	p.R2265*	0.993	249	0.8%	78	24.4%	29	27.5%	-	-	-	superfamily_HECT
UBR5	51366	genome.wustl.edu	37	8	103307432	103307432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015902.4	-1	reviewed	p.P1353L	1.000	320	0%	112	15.2%	3	33.3%	possibly_damaging(0.846)	tolerated(0.41)	neutral(0.340)	NULL
UBR5	51366	genome.wustl.edu	37	8	103307735	103307735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015902.4	-1	reviewed	p.V1280I	1.000	258	0%	75	17.3%	2	50%	possibly_damaging(0.888)	tolerated(0.85)	neutral(0.348)	NULL
AZIN1	51582	genome.wustl.edu	37	8	103855796	103855796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015878.4	-1	reviewed	p.V29I	1.000	414	0%	175	18.3%	31	25.8%	benign(0)	tolerated(1)	-	NULL
BAALC	79870	genome.wustl.edu	37	8	104240271	104240271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024812.2	+1	reviewed	p.D128Y	0.016	315	0%	109	24.8%	1	0%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
RIMS2	9699	genome.wustl.edu	37	8	105261777	105261777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001100117.1	+1	validated	p.R1218C	1.000	201	0%	68	16.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TM7SF4	81501	genome.wustl.edu	37	8	105360963	105360963	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030788.2	+1	reviewed	p.A61	0.000	245	0%	99	22.2%	1	0%	-	-	-	NULL
TM7SF4	81501	genome.wustl.edu	37	8	105361297	105361297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030788.2	+1	reviewed	p.V173F	0.360	96	0%	28	21.4%	0	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	NULL
DPYS	1807	genome.wustl.edu	37	8	105405101	105405101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001385.2	-1	reviewed	p.V452L	0.119	220	0%	61	24.6%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	superfamily_Metalo_hydrolase
ZFPM2	23414	genome.wustl.edu	37	8	106814838	106814838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012082.3	+1	reviewed	p.T843M	0.989	181	0%	60	21.7%	1	0%	probably_damaging(0.964)	deleterious(0.02)	deleterious(0.789)	NULL
ANGPT1	284	genome.wustl.edu	37	8	108306191	108306191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001146.3	-1	reviewed	p.F337L	1.000	427	0%	194	23.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
TRHR	7201	genome.wustl.edu	37	8	110131531	110131531	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003301.4	+1	reviewed	p.Y348	1.000	205	0%	34	14.7%	0	-	-	-	-	superfamily_SSF81321
NUDCD1	84955	genome.wustl.edu	37	8	110257597	110257597	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032869.3	-1	validated	p.S471	0.003	439	0%	122	22.1%	61	36%	-	-	-	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110425754	110425754	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177531.4	+1	validated	p.Y780	0.000	410	0%	187	13.9%	0	-	-	-	-	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110468568	110468568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177531.4	+1	validated	p.A2318S	1.000	300	0%	149	22.8%	0	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110471972	110471972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177531.4	+1	validated	p.V2385F	1.000	207	1%	62	11.3%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110474061	110474061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177531.4	+1	validated	p.Q2436R	1.000	318	0%	150	18.7%	0	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110488792	110488792	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177531.4	+1	validated	p.N2938T	0.999	200	0%	64	25%	0	-	benign(0.005)	tolerated(0.69)	neutral(0.002)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110493698	110493698	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177531.4	+1	validated	p.F3122V	1.000	328	0.3%	138	22.5%	0	-	possibly_damaging(0.773)	deleterious(0.03)	deleterious(0.652)	superfamily_Pectin lyase-like,HMMPfam_G8
EBAG9	9166	genome.wustl.edu	37	8	110563073	110563073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004215.3	+1	reviewed	p.R7Q	1.000	480	0%	417	13.7%	25	20%	probably_damaging(0.985)	tolerated(0.33)	neutral(0.456)	NULL
SYBU	55638	genome.wustl.edu	37	8	110587864	110587864	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099744.1	-1	validated	p.T421	0.000	320	0%	218	23.9%	10	50%	-	-	-	NULL
CSMD3	114788	genome.wustl.edu	37	8	113275951	113275951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198123.1	-1	validated	p.S3260Y	1.000	257	0%	90	22.2%	0	-	probably_damaging(0.993)	tolerated(0.52)	neutral(0.459)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113314089	113314089	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198123.1	-1	validated	p.L2791	1.000	329	0%	202	12.4%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113326673	113326673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198123.1	-1	validated	p.L2512F	1.000	291	0%	97	17.5%	0	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113358419	113358419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198123.1	-1	validated	p.D2117Y	1.000	306	0%	251	15.9%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113418831	113418831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198123.1	-1	validated	p.H1911Y	1.000	209	0%	76	23.7%	0	-	probably_damaging(0.959)	tolerated(0.06)	deleterious(0.725)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113504763	113504763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198123.1	-1	validated	p.D1745Y	1.000	327	0%	95	26.3%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	114449071	114449071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198123.1	-1	validated	p.R5C	1.000	180	0%	208	17.3%	0	-	unknown(0)	deleterious(0)	-	NULL
TRPS1	7227	genome.wustl.edu	37	8	116426929	116426929	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014112.2	-1	reviewed	p.S1069	0.937	559	0%	246	17.5%	5	0%	-	-	-	NULL
TRPS1	7227	genome.wustl.edu	37	8	116430564	116430564	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014112.2	-1	reviewed	p.L939	0.984	197	0%	91	16.5%	0	-	-	-	-	HMMPfam_GATA,HMMSmart_ZnF_GATA,superfamily_SSF57716
TRPS1	7227	genome.wustl.edu	37	8	116632174	116632174	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014112.2	-1	reviewed	p.S51A	1.000	297	0%	140	18.6%	1	0%	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	NULL
RAD21	5885	genome.wustl.edu	37	8	117862951	117862951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006265.2	-1	reviewed	p.P509H	1.000	650	0.2%	278	22.3%	81	46.9%	benign(0.09)	deleterious(0.04)	neutral(0.355)	NULL
COLEC10	10584	genome.wustl.edu	37	8	120103460	120103460	+	Splice_Site	SNP	G	G	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006438.3	+1	reviewed	e3+1	1.000	331	0%	124	20.2%	0	-	-	-	-	-
NOV	4856	genome.wustl.edu	37	8	120435268	120435268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002514.3	+1	reviewed	p.P324S	0.502	67	0%	53	13.2%	4	75%	probably_damaging(1)	tolerated(0.78)	deleterious(0.501)	HMMSmart_CT,PatternScan_CTCK_1,HMMPfam_Cys_knot
ENPP2	5168	genome.wustl.edu	37	8	120602849	120602849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006209.3	-1	reviewed	p.D420G	0.998	455	0%	141	19.1%	14	0%	benign(0.187)	tolerated(0.07)	neutral(0.337)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
ENPP2	5168	genome.wustl.edu	37	8	120628549	120628549	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006209.3	-1	reviewed	p.R245*	1.000	325	0%	110	30%	8	0%	-	-	-	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
TAF2	6873	genome.wustl.edu	37	8	120744360	120744360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003184.3	-1	reviewed	p.T1135I	0.001	773	0.1%	205	19.5%	34	23.5%	benign(0.261)	deleterious(0.01)	neutral(0.433)	NULL
TAF2	6873	genome.wustl.edu	37	8	120754781	120754781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003184.3	-1	reviewed	p.K1110N	0.968	192	0%	73	24.7%	20	50%	possibly_damaging(0.856)	deleterious(0)	deleterious(0.775)	NULL
DSCC1	79075	genome.wustl.edu	37	8	120850576	120850576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024094.2	-1	validated	p.E332D	0.973	302	0%	227	11%	18	27.7%	possibly_damaging(0.896)	tolerated(0.11)	deleterious(0.625)	HMMPfam_DUF2036
COL14A1	7373	genome.wustl.edu	37	8	121180405	121180405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021110.1	+1	validated	p.D119Y	1.000	150	0%	38	21.1%	2	50%	probably_damaging(0.964)	deleterious(0.02)	deleterious(0.789)	NULL
COL14A1	7373	genome.wustl.edu	37	8	121209180	121209180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021110.1	+1	validated	p.R196Q	0.999	256	0.4%	246	20.3%	0	-	benign(0.023)	deleterious(0.01)	neutral(0.407)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
HAS2	3037	genome.wustl.edu	37	8	122641056	122641056	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005328.2	-1	reviewed	p.V175	0.998	398	0%	195	22.1%	1	0%	-	-	-	superfamily_SSF53448
ZHX2	22882	genome.wustl.edu	37	8	123963874	123963874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014943.3	+1	reviewed	p.V42M	0.000	174	0%	108	18.5%	8	37.5%	benign(0.03)	deleterious(0.02)	neutral(0.385)	NULL
ZHX2	22882	genome.wustl.edu	37	8	123964116	123964116	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014943.3	+1	reviewed	p.Y122	0.990	172	0.6%	69	14.5%	6	66.6%	-	-	-	HMMSmart_ZnF_C2H2
ZHX2	22882	genome.wustl.edu	37	8	123964690	123964690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014943.3	+1	reviewed	p.R314C	1.000	107	0%	93	25.8%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_HOX,superfamily_Homeodomain_like
ZHX2	22882	genome.wustl.edu	37	8	123964850	123964850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014943.3	+1	reviewed	p.P367L	0.999	51	0%	38	23.7%	10	10%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DERL1	79139	genome.wustl.edu	37	8	124027714	124027714	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024295.4	-1	validated	p.G243	0.996	61	0%	29	27.6%	84	32.1%	-	-	-	NULL
DERL1	79139	genome.wustl.edu	37	8	124031533	124031533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024295.4	-1	validated	p.E173D	1.000	312	0%	136	19.1%	82	34.1%	benign(0.229)	tolerated(0.11)	neutral(0.295)	HMMPfam_DER1
DERL1	79139	genome.wustl.edu	37	8	124034935	124034935	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024295.4	-1	validated	p.T148P	1.000	349	0%	112	33%	114	38.5%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_DER1
WDR67	93594	genome.wustl.edu	37	8	124146433	124146433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145647.3	+1	validated	p.R829K	0.928	265	0%	89	21.3%	5	60%	possibly_damaging(0.833)	tolerated(0.44)	neutral(0.330)	NULL
C8orf76	84933	genome.wustl.edu	37	8	124243808	124243808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032847.1	-1	predicted	p.A183T	0.001	272	0%	240	20.4%	36	36.1%	benign(0)	tolerated(1)	-	NULL
ZHX1	11244	genome.wustl.edu	37	8	124267114	124267114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017926.1	-1	reviewed	p.G358E	1.000	369	0%	183	24%	10	20%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
WDYHV1	55093	genome.wustl.edu	37	8	124442250	124442250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018024.1	+1	provisional	p.P71S	1.000	346	0%	193	13%	10	20%	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_WDYHV
FBXO32	114907	genome.wustl.edu	37	8	124525496	124525496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_058229.2	-1	reviewed	p.Y198C	0.998	330	0%	157	25.5%	11	45.4%	possibly_damaging(0.747)	tolerated(0.19)	neutral(0.324)	NULL
ANXA13	312	genome.wustl.edu	37	8	124693491	124693491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003954.1	-1	reviewed	p.L355I	1.000	221	0.5%	71	22.5%	1	0%	benign(0.346)	tolerated(0.57)	neutral(0.116)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
FAM91A1	157769	genome.wustl.edu	37	8	124796740	124796740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144963.2	+1	validated	p.R245Q	1.000	359	0%	236	19.5%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FER1L6	654463	genome.wustl.edu	37	8	124992805	124992805	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039112.2	+1	validated	p.G388	1.000	354	0%	129	22.5%	0	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
FER1L6	654463	genome.wustl.edu	37	8	125074241	125074241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039112.2	+1	validated	p.I1099T	0.000	110	0%	44	18.2%	0	-	benign(0)	tolerated(0.89)	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TRMT12	55039	genome.wustl.edu	37	8	125463466	125463466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017956.3	+1	validated	p.G100S	0.002	50	0%	41	26.8%	10	40%	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
TRMT12	55039	genome.wustl.edu	37	8	125463744	125463744	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017956.3	+1	validated	p.L192	1.000	200	0%	82	18.3%	16	25%	-	-	-	HMMPfam_Met_10,superfamily_SSF53335
TRMT12	55039	genome.wustl.edu	37	8	125464157	125464157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017956.3	+1	validated	p.G330E	1.000	143	0%	66	18.2%	13	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53335
RNF139	11236	genome.wustl.edu	37	8	125499280	125499280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007218.3	+1	reviewed	p.V464I	1.000	230	0%	151	21.2%	26	30.7%	benign(0.416)	tolerated(0.69)	neutral(0.137)	NULL
TATDN1	83940	genome.wustl.edu	37	8	125528192	125528192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032026.3	-1	validated	p.K94N	0.400	321	0.3%	180	24.4%	52	55.7%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_TatD_DNase,superfamily_Metallo-dependent hydrolases
SQLE	6713	genome.wustl.edu	37	8	126011707	126011707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003129.3	+1	reviewed	p.I21T	0.371	226	0%	323	11.5%	7	0%	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
SQLE	6713	genome.wustl.edu	37	8	126021539	126021539	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003129.3	+1	reviewed	p.R354	0.993	128	0%	105	21.9%	10	70%	-	-	-	HMMPfam_SE,superfamily_SSF51905
KIAA0196	9897	genome.wustl.edu	37	8	126094651	126094651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014846.3	-1	reviewed	p.L131I	1.000	255	0%	193	18.1%	9	33.3%	possibly_damaging(0.945)	tolerated(0.54)	neutral(0.397)	HMMPfam_Strumpellin
TRIB1	10221	genome.wustl.edu	37	8	126445609	126445609	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025195.2	+1	validated	p.L137	1.000	172	0%	218	22.5%	14	35.7%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
POU5F1B	5462	genome.wustl.edu	37	8	128428978	128428978	+	Silent	SNP	C	C	T	rs28409416		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000391675	+1	known	p.S289	0.743	38	0%	47	21.3%	8	0%	-	-	-	HMMSmart_HOX
FAM49B	51571	genome.wustl.edu	37	8	130867873	130867873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016623.3	-1	predicted	p.R141Q	1.000	242	0.4%	121	26.4%	50	34%	possibly_damaging(0.864)	tolerated(0.34)	neutral(0.358)	HMMPfam_DUF1394
ASAP1	50807	genome.wustl.edu	37	8	131200363	131200363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018482.2	-1	validated	p.V158I	1.000	301	0%	60	20%	3	0%	benign(0.176)	tolerated(0.27)	neutral(0.050)	NULL
ADCY8	114	genome.wustl.edu	37	8	132052013	132052013	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001115.2	-1	reviewed	p.D189	1.000	132	0%	181	29.8%	0	-	-	-	-	NULL
KCNQ3	3786	genome.wustl.edu	37	8	133152366	133152366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004519.2	-1	reviewed	p.E509K	0.998	83	0%	52	19.2%	0	-	probably_damaging(0.978)	deleterious(0.04)	deleterious(0.769)	HMMPfam_KCNQ_channel
KCNQ3	3786	genome.wustl.edu	37	8	133153555	133153555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004519.2	-1	reviewed	p.R429Q	1.000	323	0%	169	22.5%	0	-	probably_damaging(0.994)	tolerated(0.07)	deleterious(0.771)	NULL
LRRC6	23639	genome.wustl.edu	37	8	133595950	133595950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012472.3	-1	provisional	p.T406I	0.000	461	0%	79	17.7%	13	46.1%	benign(0.005)	tolerated(0.38)	neutral(0.018)	NULL
PHF20L1	51105	genome.wustl.edu	37	8	133827027	133827027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016018.4	+1	validated	p.S359Y	1.000	277	0%	67	25.4%	8	12.5%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
TG	7038	genome.wustl.edu	37	8	133895149	133895149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003235.4	+1	reviewed	p.A327V	0.007	69	0%	40	12.5%	0	-	possibly_damaging(0.521)	deleterious(0)	deleterious(0.620)	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain
WISP1	8840	genome.wustl.edu	37	8	134232915	134232915	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003882.2	+1	reviewed	p.I147	0.990	48	0%	45	24.4%	0	-	-	-	-	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1
NDRG1	10397	genome.wustl.edu	37	8	134276883	134276883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135242.1	-1	reviewed	p.E38K	1.000	158	0.6%	102	18.6%	30	36.6%	possibly_damaging(0.658)	deleterious(0.01)	deleterious(0.638)	HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases
ZFAT	57623	genome.wustl.edu	37	8	135490794	135490794	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020863.3	-1	reviewed	p.I1221	1.000	34	0%	22	18.2%	2	0%	-	-	-	NULL
ZFAT	57623	genome.wustl.edu	37	8	135614009	135614009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020863.3	-1	reviewed	p.Q651H	0.032	105	0%	80	28.7%	3	33.3%	benign(0.075)	deleterious(0.05)	neutral(0.350)	NULL
ZFAT	57623	genome.wustl.edu	37	8	135614561	135614561	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020863.3	-1	reviewed	p.F467	0.879	29	0%	35	22.9%	4	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FAM135B	51059	genome.wustl.edu	37	8	139155274	139155274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015912.3	-1	validated	p.L1207I	1.000	368	0%	182	19.8%	0	-	benign(0.307)	tolerated(0.11)	neutral(0.367)	HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases
FAM135B	51059	genome.wustl.edu	37	8	139164531	139164531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015912.3	-1	validated	p.E729D	0.982	62	0%	47	29.8%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
FAM135B	51059	genome.wustl.edu	37	8	139209863	139209863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015912.3	-1	validated	p.W240L	1.000	151	0%	56	25%	0	-	probably_damaging(0.998)	tolerated(0.23)	deleterious(0.516)	NULL
COL22A1	169044	genome.wustl.edu	37	8	139727960	139727960	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152888.1	-1	validated	p.G828*	0.998	234	0.4%	118	15.3%	0	-	-	-	-	HMMPfam_Collagen
COL22A1	169044	genome.wustl.edu	37	8	139833603	139833603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152888.1	-1	validated	p.G341S	1.000	175	0%	55	23.6%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
COL22A1	169044	genome.wustl.edu	37	8	139838991	139838991	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152888.1	-1	validated	p.Y293	0.973	129	0%	39	20.5%	1	0%	-	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
KCNK9	51305	genome.wustl.edu	37	8	140631201	140631201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016601.2	-1	reviewed	p.R142H	1.000	118	0%	101	22.8%	0	-	possibly_damaging(0.818)	tolerated(0.11)	deleterious(0.581)	superfamily_SSF81324
LOC100288108	100288108	genome.wustl.edu	37	8	140715017	140715017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342878.1	+1	model	p.A387T	0.998	65	0%	100	23%	0	-	-	-	-	NULL
TRAPPC9	83696	genome.wustl.edu	37	8	140743388	140743388	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031466.5	-1	reviewed	p.H1219	0.983	66	0%	68	23.5%	40	60%	-	-	-	NULL
EIF2C2	27161	genome.wustl.edu	37	8	141566383	141566383	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012154.3	-1	reviewed	p.S336Y	0.989	90	0%	95	16.8%	2	0%	-	-	-	NULL
PTK2	5747	genome.wustl.edu	37	8	141716245	141716245	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005607.3	-1	reviewed	p.Q756	1.000	314	0%	97	24.7%	18	33.3%	-	-	-	NULL
PTK2	5747	genome.wustl.edu	37	8	141762405	141762405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005607.3	-1	reviewed	p.A470D	1.000	226	0%	116	27.6%	20	35%	benign(0.003)	tolerated(0.44)	neutral(0.013)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP
DENND3	22898	genome.wustl.edu	37	8	142202480	142202480	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014957.2	+1	validated	p.E1064*	0.009	215	0%	197	26.9%	13	7.6%	-	-	-	superfamily_WD40 repeat-like
SLC45A4	57210	genome.wustl.edu	37	8	142228414	142228414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080431.1	-1	provisional	p.R391H	0.994	12	0%	16	31.2%	10	60%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
FLJ43860	389690	genome.wustl.edu	37	8	142458101	142458101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207414.2	-1	validated	p.L909I	0.811	47	0%	38	18.4%	0	-	probably_damaging(0.963)	deleterious(0.02)	deleterious(0.788)	superfamily_ARM repeat
FLJ43860	389690	genome.wustl.edu	37	8	142498672	142498672	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207414.2	-1	validated	p.C243	0.975	122	0%	97	23.7%	0	-	-	-	-	NULL
BAI1	575	genome.wustl.edu	37	8	143562622	143562622	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001702.2	+1	reviewed	p.I612	1.000	44	0%	82	19.5%	0	-	-	-	-	HMMPfam_HRM,HMMSmart_SM00008
BAI1	575	genome.wustl.edu	37	8	143603472	143603472	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001702.2	+1	reviewed	p.G1057	0.996	49	0%	54	24.1%	0	-	-	-	-	HMMPfam_7tm_2
JRK	8629	genome.wustl.edu	37	8	143746977	143746977	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077527.1	-1	reviewed	p.A167	0.985	69	0%	117	33.3%	1	0%	-	-	-	NULL
LY6K	54742	genome.wustl.edu	37	8	143784692	143784692	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017527.3	+1	validated	p.K192T	0.000	314	0%	375	26.7%	7	14.2%	probably_damaging(0.994)	tolerated(0.11)	deleterious(0.724)	NULL
LYNX1	66004	genome.wustl.edu	37	8	143856749	143856749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177457.3	-1	reviewed	p.S63P	0.999	66	0%	71	18.3%	0	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMPfam_UPAR_LY6,HMMSmart_LU,superfamily_SSF57302
C8orf31	286122	genome.wustl.edu	37	8	144124502	144124502	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173687.2	+1	predicted	p.R28	0.001	125	0%	77	15.6%	2	0%	-	-	-	NULL
ZFP41	286128	genome.wustl.edu	37	8	144332045	144332045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173832.3	+1	provisional	p.T11M	0.000	59	0%	71	22.5%	3	0%	possibly_damaging(0.836)	deleterious(0)	deleterious(0.764)	NULL
TOP1MT	116447	genome.wustl.edu	37	8	144391631	144391631	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052963.1	-1	reviewed	p.G596*	0.005	171	0%	190	21.6%	20	60%	-	-	-	superfamily_DNA_brk_join_enz
RHPN1	114822	genome.wustl.edu	37	8	144462127	144462127	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052924.2	+1	validated	p.H358	0.991	47	0%	57	17.5%	36	38.8%	-	-	-	HMMPfam_BRO1
ZC3H3	23144	genome.wustl.edu	37	8	144589984	144589984	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015117.2	-1	validated	p.S549	0.000	74	1.4%	74	24.3%	29	27.5%	-	-	-	NULL
GSDMD	79792	genome.wustl.edu	37	8	144644661	144644661	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024736.6	+1	reviewed	p.E394	0.020	49	0%	60	33.3%	169	29.5%	-	-	-	HMMPfam_Gasdermin
C8orf73	642475	genome.wustl.edu	37	8	144649965	144649965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001100878.1	-1	validated	p.V620M	0.056	35	0%	44	29.5%	12	8.3%	benign(0.429)	tolerated(0.78)	neutral(0.141)	superfamily_ARM-type_fold
NAPRT1	93100	genome.wustl.edu	37	8	144657671	144657671	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145201.4	-1	validated	p.R405*	0.054	42	0%	52	17.3%	137	4.3%	-	-	-	HMMPfam_NAPRTase,superfamily_Nicotinate/Quinolinate PRTase C-terminal domain-like
ZNF623	9831	genome.wustl.edu	37	8	144732673	144732673	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014789.3	+1	validated	p.Q211*	0.152	188	0%	110	20.9%	9	77.7%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FAM83H	286077	genome.wustl.edu	37	8	144809053	144809053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198488.3	-1	reviewed	p.H860Y	0.015	26	0%	40	37.5%	19	47.3%	benign(0.016)	tolerated(0.2)	neutral(0.050)	NULL
FAM83H	286077	genome.wustl.edu	37	8	144812672	144812672	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198488.3	-1	reviewed	p.Y27*	0.996	18	0%	21	23.8%	10	40%	-	-	-	HMMPfam_DUF1669
NRBP2	340371	genome.wustl.edu	37	8	144919902	144919902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178564.3	-1	validated	p.R46Q	0.997	78	0%	79	25.3%	8	62.5%	benign(0.361)	tolerated(0.59)	neutral(0.119)	NULL
PLEC	5339	genome.wustl.edu	37	8	145005737	145005737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201380.2	-1	reviewed	p.V894I	0.990	101	0%	115	20.9%	13	30.7%	unknown(0)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
GRINA	2907	genome.wustl.edu	37	8	145066078	145066078	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000837.1	+1	validated	p.V175	1.000	431	0.2%	454	26.4%	378	36.2%	-	-	-	HMMPfam_UPF0005
OPLAH	26873	genome.wustl.edu	37	8	145108212	145108212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000426825	-1	known	p.R924H	1.000	66	1.5%	102	19.6%	20	25%	benign(0.309)	tolerated(0.09)	neutral(0.393)	HMMPfam_Hydantoinase_B
OPLAH	26873	genome.wustl.edu	37	8	145111050	145111050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000426825	-1	known	p.S699I	1.000	52	0%	69	31.9%	6	0%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
CYC1	1537	genome.wustl.edu	37	8	145151394	145151394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001916.3	+1	validated	p.A203V	1.000	234	0%	327	26.9%	466	44.6%	possibly_damaging(0.899)	deleterious(0)	deleterious(0.800)	HMMPfam_Cytochrom_C1,superfamily_Cytochrome c
MAF1	84232	genome.wustl.edu	37	8	145160854	145160854	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032272.4	+1	reviewed	p.L56	1.000	79	0%	107	12.1%	169	13.6%	-	-	-	HMMPfam_Maf1
HEATR7A	727957	genome.wustl.edu	37	8	145245780	145245780	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032450.2	+1	provisional	p.D219A	1.000	71	0%	89	16.9%	13	46.1%	probably_damaging(0.977)	tolerated(0.07)	deleterious(0.738)	superfamily_ARM repeat
FBXL6	26233	genome.wustl.edu	37	8	145580053	145580053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012162.1	-1	reviewed	p.R378S	0.992	36	0%	44	22.7%	47	27.6%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	HMMPfam_LRR_2,superfamily_RNI-like
ADCK5	203054	genome.wustl.edu	37	8	145608339	145608339	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174922.3	+1	validated	p.A58	0.350	100	0%	69	21.7%	12	33.3%	-	-	-	NULL
ADCK5	203054	genome.wustl.edu	37	8	145616624	145616624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174922.3	+1	validated	p.R250W	0.288	86	0%	144	27.1%	10	50%	benign(0.073)	deleterious(0.01)	neutral(0.411)	HMMPfam_ABC1,superfamily_Kinase_like
ADCK5	203054	genome.wustl.edu	37	8	145617217	145617217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174922.3	+1	validated	p.G364D	1.000	55	0%	99	22.2%	16	31.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like
CPSF1	29894	genome.wustl.edu	37	8	145620226	145620226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013291.2	-1	validated	p.Q1095H	1.000	51	0%	58	37.9%	88	38.6%	benign(0.018)	deleterious(0)	neutral(0.445)	HMMPfam_CPSF_A
CPSF1	29894	genome.wustl.edu	37	8	145623968	145623968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013291.2	-1	validated	p.D567N	0.996	90	0%	126	19.8%	35	42.8%	benign(0.002)	tolerated(0.22)	neutral(0.042)	NULL
LOC100287098	100287098	genome.wustl.edu	37	8	145660725	145660725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342882.1	+1	model	p.L42M	0.000	18	0%	23	30.4%	0	-	-	-	-	NULL
TONSL	4796	genome.wustl.edu	37	8	145662268	145662268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013432.4	-1	reviewed	p.V588L	0.871	27	0%	42	33.3%	16	25%	probably_damaging(0.985)	tolerated(0.06)	deleterious(0.754)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
TONSL	4796	genome.wustl.edu	37	8	145668550	145668550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013432.4	-1	reviewed	p.S140N	1.000	74	0%	91	19.8%	8	50%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_TPR-like
KIFC2	90990	genome.wustl.edu	37	8	145693782	145693782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145754.2	+1	provisional	p.R294Q	0.879	28	0%	44	15.9%	3	66.6%	benign(0.003)	tolerated(0.08)	neutral(0.300)	NULL
RECQL4	9401	genome.wustl.edu	37	8	145738699	145738699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000428558	-1	known	p.L789M	1.000	7	0.000	8	0.500	11	63.6%	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
RECQL4	9401	genome.wustl.edu	37	8	145740569	145740569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000428558	-1	known	p.P483H	0.997	44	0%	60	15%	8	37.5%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
RECQL4	9401	genome.wustl.edu	37	8	145742455	145742455	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000428558	-1	known	p.A111	1.000	28	0%	26	26.9%	5	40%	-	-	-	NULL
LRRC14	9684	genome.wustl.edu	37	8	145746557	145746557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014665.1	+1	provisional	p.A393T	0.000	58	0%	92	25%	26	38.4%	benign(0)	tolerated(0.93)	-	superfamily_SSF52047
ZNF34	80778	genome.wustl.edu	37	8	146003436	146003436	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030580.3	-1	validated	p.N70	0.019	125	0%	79	16.5%	3	66.6%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
RPL8	6132	genome.wustl.edu	37	8	146015828	146015828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000973.3	-1	reviewed	p.D176G	1.000	194	0%	261	20.3%	4888	42.5%	benign(0.111)	deleterious(0.02)	neutral(0.392)	HMMPfam_Ribosomal_L2_C,superfamily_Translation proteins SH3-like domain
ZNF517	340385	genome.wustl.edu	37	8	146029051	146029051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213605.2	+1	validated	p.A20D	0.306	359	0%	514	25.5%	1	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF517	340385	genome.wustl.edu	37	8	146032853	146032853	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213605.2	+1	validated	p.K184	0.969	41	0%	40	17.5%	2	50%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355
ZNF7	7553	genome.wustl.edu	37	8	146066746	146066746	+	Missense_Mutation	SNP	C	C	T	rs180952992	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003416.2	+1	validated	p.T85M	0.000	133	0%	98	22.4%	8	62.5%	possibly_damaging(0.806)	tolerated(0.1)	deleterious(0.590)	NULL
ZNF7	7553	genome.wustl.edu	37	8	146068012	146068012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003416.2	+1	validated	p.S507I	0.003	224	0%	177	24.3%	14	42.8%	probably_damaging(0.991)	tolerated(0.63)	neutral(0.448)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF250	58500	genome.wustl.edu	37	8	146108164	146108164	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021061.3	-1	validated	p.S140*	0.971	576	0.2%	391	26.3%	7	85.7%	-	-	-	NULL
ZNF252	286101	genome.wustl.edu	37	8	146202046	146202046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000355436	-1	known	p.C601Y	0.000	143	0%	31	22.6%	5	20%	benign(0.081)	tolerated(0.52)	neutral(0.015)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF252	286101	genome.wustl.edu	37	8	146202794	146202794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000355436	-1	known	p.L373I	0.625	116	0%	38	28.9%	5	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FOXD4	2298	genome.wustl.edu	37	9	116946	116946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207305.3	-1	validated	p.A392T	0.956	56	0%	34	26.5%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
DOCK8	81704	genome.wustl.edu	37	9	379892	379892	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203447.3	+1	reviewed	p.Y786	0.844	105	0%	40	35%	9	0%	-	-	-	NULL
DOCK8	81704	genome.wustl.edu	37	9	432257	432257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203447.3	+1	reviewed	p.S1505F	1.000	249	0%	172	19.8%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DMRT3	58524	genome.wustl.edu	37	9	990808	990808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021240.2	+1	validated	p.V408I	1.000	77	0%	58	22.4%	0	-	possibly_damaging(0.636)	deleterious(0)	deleterious(0.667)	NULL
SMARCA2	6595	genome.wustl.edu	37	9	2070463	2070463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003070.3	+1	reviewed	p.D580N	1.000	353	0%	252	17.5%	13	69.2%	benign(0.355)	deleterious(0)	deleterious(0.557)	NULL
RFX3	5991	genome.wustl.edu	37	9	3301594	3301594	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134428.1	-1	reviewed	p.Q167H	1.000	235	0%	82	9.8%	2	0%	probably_damaging(0.986)	tolerated(0.1)	deleterious(0.721)	NULL
GLIS3	169792	genome.wustl.edu	37	9	4286285	4286285	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042413.1	-1	reviewed	p.S47	0.269	97	0%	73	19.2%	2	50%	-	-	-	NULL
SLC1A1	6505	genome.wustl.edu	37	9	4573921	4573921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004170.5	+1	reviewed	p.G261D	1.000	422	0%	203	19.2%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SDF
PPAPDC2	403313	genome.wustl.edu	37	9	4663002	4663002	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203453.2	+1	validated	p.S209	1.000	198	0%	236	21.6%	9	33.3%	-	-	-	HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase
PPAPDC2	403313	genome.wustl.edu	37	9	4663166	4663166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203453.2	+1	validated	p.G264D	1.000	292	0%	370	19.5%	12	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase
JAK2	3717	genome.wustl.edu	37	9	5089762	5089762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004972.3	+1	reviewed	p.S887I	1.000	323	0%	385	19.5%	10	30%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
RLN2	6019	genome.wustl.edu	37	9	5300262	5300262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134441.1	-1	reviewed	p.L132I	0.004	364	0%	321	21.2%	3	33.3%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_Insulin,HMMSmart_SM00078,superfamily_Insulin-like
KIAA1432	57589	genome.wustl.edu	37	9	5763626	5763626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020829.2	+1	validated	p.E788K	1.000	236	0%	67	23.9%	2	100%	possibly_damaging(0.907)	deleterious(0.03)	deleterious(0.725)	HMMPfam_RIC1
KIAA1432	57589	genome.wustl.edu	37	9	5770092	5770092	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020829.2	+1	validated	p.E1065*	1.000	184	0%	47	23.4%	3	33.3%	-	-	-	NULL
RANBP6	26953	genome.wustl.edu	37	9	6012733	6012733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012416.2	-1	validated	p.L959M	1.000	371	0%	509	24.2%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RANBP6	26953	genome.wustl.edu	37	9	6014433	6014433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012416.2	-1	validated	p.A392V	1.000	240	0%	212	14.6%	8	25%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_ARM-type_fold
UHRF2	115426	genome.wustl.edu	37	9	6421126	6421126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152896.1	+1	reviewed	p.G123D	1.000	514	0%	434	21.4%	10	30%	benign(0.325)	tolerated(0.74)	neutral(0.103)	NULL
UHRF2	115426	genome.wustl.edu	37	9	6433968	6433968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152896.1	+1	reviewed	p.H147Y	1.000	301	0%	141	27%	7	14.2%	benign(0.106)	tolerated(0.08)	neutral(0.308)	NULL
UHRF2	115426	genome.wustl.edu	37	9	6434147	6434147	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152896.1	+1	reviewed	p.D206	1.000	284	0%	113	28.3%	4	25%	-	-	-	NULL
SNRPEP2	414153	genome.wustl.edu	37	9	6748924	6748924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000338402	-1	known	p.L20I	0.994	226	0%	139	26.6%	0	-	possibly_damaging(0.932)	tolerated(0.21)	neutral(0.422)	superfamily_Sm_like_riboprot
KDM4C	23081	genome.wustl.edu	37	9	6805634	6805634	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015061.3	+1	reviewed	p.C60	0.916	147	0%	172	22.7%	1	100%	-	-	-	NULL
KDM4C	23081	genome.wustl.edu	37	9	6984370	6984370	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015061.3	+1	reviewed	p.V440	0.028	132	0%	38	36.8%	9	11.1%	-	-	-	NULL
PTPRD	5789	genome.wustl.edu	37	9	8319853	8319853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002839.3	-1	reviewed	p.R1883Q	1.000	317	0%	70	18.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRD	5789	genome.wustl.edu	37	9	8507350	8507350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002839.3	-1	reviewed	p.T543I	1.000	571	0%	189	28%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRD	5789	genome.wustl.edu	37	9	8528707	8528707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002839.3	-1	reviewed	p.T142M	0.998	130	0%	30	36.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PTPRD	5789	genome.wustl.edu	37	9	8633334	8633334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002839.3	-1	reviewed	p.R112K	1.000	299	0%	106	18.9%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TYRP1	7306	genome.wustl.edu	37	9	12694201	12694201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000550.2	+1	reviewed	p.T69A	0.894	111	0%	38	31.6%	0	-	benign(0.001)	tolerated(0.78)	neutral(0.001)	NULL
TYRP1	7306	genome.wustl.edu	37	9	12709135	12709135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000550.2	+1	reviewed	p.A523T	0.915	361	0.3%	123	20.3%	2	0%	benign(0.009)	tolerated(0.36)	neutral(0.021)	NULL
MPDZ	8777	genome.wustl.edu	37	9	13106992	13106992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003829.3	-1	validated	p.G2033D	1.000	395	0%	164	20.7%	3	33.3%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MPDZ	8777	genome.wustl.edu	37	9	13137957	13137957	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003829.3	-1	validated	p.E1400V	1.000	181	0%	88	21.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
ZDHHC21	340481	genome.wustl.edu	37	9	14619049	14619049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178566.4	-1	validated	p.G238D	1.000	143	0%	50	16%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FREM1	158326	genome.wustl.edu	37	9	14769832	14769832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144966.5	-1	reviewed	p.D1698E	0.973	286	0%	117	23.9%	1	0%	possibly_damaging(0.932)	tolerated(0.12)	deleterious(0.639)	NULL
FREM1	158326	genome.wustl.edu	37	9	14859180	14859180	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144966.5	-1	reviewed	e3+1	1.000	70	1.4%	26	30.8%	0	-	-	-	-	-
PSIP1	11168	genome.wustl.edu	37	9	15472718	15472718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128217.1	-1	validated	p.A297T	0.938	822	0%	308	24.7%	74	48.6%	benign(0.036)	tolerated(0.12)	neutral(0.263)	NULL
C9orf93	203238	genome.wustl.edu	37	9	15623358	15623358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173550.2	+1	predicted	p.S257C	0.996	334	0%	285	14%	1	0%	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	NULL
BNC2	54796	genome.wustl.edu	37	9	16419043	16419043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017637.5	-1	validated	p.R1082W	1.000	310	0%	112	23.2%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00355
BNC2	54796	genome.wustl.edu	37	9	16435826	16435826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017637.5	-1	validated	p.S789I	1.000	151	0%	54	16.7%	2	0%	possibly_damaging(0.861)	tolerated(0.06)	deleterious(0.655)	NULL
BNC2	54796	genome.wustl.edu	37	9	16436325	16436325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017637.5	-1	validated	p.P623S	0.989	211	0%	81	21%	1	100%	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
CNTLN	54875	genome.wustl.edu	37	9	17340914	17340914	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017738.2	+1	validated	p.E578	1.000	304	0%	146	18.5%	5	60%	-	-	-	NULL
ADAMTSL1	92949	genome.wustl.edu	37	9	18574212	18574212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040272.4	+1	validated	p.G141D	1.000	180	0%	54	14.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADAMTSL1	92949	genome.wustl.edu	37	9	18639300	18639300	+	Missense_Mutation	SNP	G	G	T	rs776755	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040272.4	+1	validated	p.S242I	1.000	213	0%	66	25.8%	0	-	possibly_damaging(0.857)	deleterious(0.01)	deleterious(0.737)	NULL
DENND4C	55667	genome.wustl.edu	37	9	19328073	19328073	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017925.4	+1	provisional	p.P486	0.996	242	0.4%	157	18.5%	1	0%	-	-	-	NULL
DENND4C	55667	genome.wustl.edu	37	9	19346071	19346071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017925.4	+1	provisional	p.A817T	1.000	428	0%	178	18%	2	0%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	NULL
DENND4C	55667	genome.wustl.edu	37	9	19357028	19357028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017925.4	+1	provisional	p.A1329T	0.617	246	0%	141	25.5%	4	50%	benign(0.001)	tolerated(0.24)	neutral(0.037)	NULL
MLLT3	4300	genome.wustl.edu	37	9	20413906	20413906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004529.2	-1	validated	p.A313V	0.933	531	0%	160	10%	2	0%	probably_damaging(0.99)	tolerated(0.11)	deleterious(0.713)	NULL
KIAA1797	54914	genome.wustl.edu	37	9	20715369	20715369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017794.3	+1	validated	p.R6M	1.000	307	0%	116	14.7%	0	-	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	NULL
KIAA1797	54914	genome.wustl.edu	37	9	20874689	20874689	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017794.3	+1	validated	p.E734*	1.000	408	0%	93	16.1%	2	0%	-	-	-	superfamily_ARM-type_fold
KIAA1797	54914	genome.wustl.edu	37	9	20981485	20981485	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017794.3	+1	validated	p.E1480*	1.000	384	0%	87	33.3%	2	50%	-	-	-	superfamily_ARM-type_fold
KLHL9	55958	genome.wustl.edu	37	9	21334720	21334720	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018847.2	-1	validated	p.G47*	0.998	174	0%	224	11.2%	8	50%	-	-	-	superfamily_POZ domain,HMMPfam_BTB
IFNA13	3447	genome.wustl.edu	37	9	21367512	21367512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006900.3	-1	validated	p.E166D	0.874	632	0%	306	19%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Interferon,HMMSmart_SM00076,superfamily_4-helical cytokines
IFNA13	3447	genome.wustl.edu	37	9	21367943	21367943	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006900.3	-1	validated	p.L23	0.035	325	0%	148	15.5%	0	-	-	-	-	HMMPfam_Interferon
ELAVL2	1993	genome.wustl.edu	37	9	23692733	23692733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004432.3	-1	reviewed	p.A301D	1.000	236	0%	67	16.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
C9orf82	79886	genome.wustl.edu	37	9	26842373	26842373	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024828.3	-1	validated	p.L338	1.000	412	0%	260	23.1%	26	30.7%	-	-	-	NULL
IFT74	80173	genome.wustl.edu	37	9	27029030	27029030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099222.1	+1	validated	p.D328N	1.000	186	0%	84	15.5%	15	26.6%	possibly_damaging(0.712)	tolerated(0.16)	neutral(0.317)	NULL
TEK	7010	genome.wustl.edu	37	9	27169569	27169569	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000459.3	+1	reviewed	p.S190	0.560	175	0%	46	17.4%	2	0%	-	-	-	NULL
TEK	7010	genome.wustl.edu	37	9	27206598	27206598	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000459.3	+1	reviewed	p.Q795*	1.000	204	0%	63	27%	2	0%	-	-	-	NULL
MOB3B	79817	genome.wustl.edu	37	9	27455319	27455319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024761.3	-1	reviewed	p.T77I	1.000	342	0%	85	15.3%	8	37.5%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Mob1_phocein,superfamily_Mob1_phocein
LOC100288436	100288436	genome.wustl.edu	37	9	30559270	30559270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342887.1	-1	model	p.K56N	0.001	189	0%	166	24.1%	7	0%	-	-	-	NULL
ACO1	48	genome.wustl.edu	37	9	32427336	32427336	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002197.2	+1	reviewed	p.N462	0.002	194	0%	58	36.2%	27	51.8%	-	-	-	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
DDX58	23586	genome.wustl.edu	37	9	32491420	32491420	+	Splice_Site	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014314.3	-1	reviewed	e5-2	0.168	233	0%	112	20.5%	0	-	-	-	-	-
DDX58	23586	genome.wustl.edu	37	9	32493845	32493845	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014314.3	-1	reviewed	p.E113*	1.000	221	0%	79	21.5%	7	0%	-	-	-	NULL
TOPORS	10210	genome.wustl.edu	37	9	32542873	32542873	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005802.3	-1	reviewed	p.C550	0.202	347	0%	272	18.4%	12	50%	-	-	-	NULL
TAF1L	138474	genome.wustl.edu	37	9	32631273	32631273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153809.2	-1	provisional	p.D1435E	1.000	600	0%	255	18%	1	0%	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
DNAJA1	3301	genome.wustl.edu	37	9	33038709	33038709	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001539.2	+1	validated	p.L334	0.987	363	0%	329	25.2%	488	38.5%	-	-	-	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
CHMP5	51510	genome.wustl.edu	37	9	33278165	33278165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016410.4	+1	validated	p.D184G	1.000	528	0%	324	21%	166	37.9%	possibly_damaging(0.523)	deleterious(0.05)	deleterious(0.522)	HMMPfam_Snf7
NFX1	4799	genome.wustl.edu	37	9	33294867	33294867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002504.3	+1	reviewed	p.V159M	0.016	178	0%	85	17.6%	4	50%	benign(0.066)	deleterious(0)	neutral(0.449)	NULL
NFX1	4799	genome.wustl.edu	37	9	33338510	33338510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002504.3	+1	reviewed	p.A680T	1.000	438	0%	151	18.5%	28	35.7%	benign(0.311)	tolerated(0.56)	neutral(0.104)	NULL
NOL6	65083	genome.wustl.edu	37	9	33463861	33463861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022917.4	-1	reviewed	p.L988I	1.000	130	0%	139	30.9%	35	48.5%	probably_damaging(0.972)	tolerated(0.27)	neutral(0.448)	HMMPfam_Nrap
ANKRD18B	441459	genome.wustl.edu	37	9	33529083	33529083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001718334.2	+1	model	p.T264I	1.000	364	0%	340	25.3%	0	-	benign(0.201)	deleterious(0)	neutral(0.464)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PRSS3	5646	genome.wustl.edu	37	9	33795589	33795589	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002771.3	+1	reviewed	p.I6	1.000	303	0%	188	22.3%	0	-	-	-	-	NULL
PRSS3	5646	genome.wustl.edu	37	9	33798495	33798495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007343.2	+1	reviewed	p.D213Y	0.120	383	0%	246	19.5%	3	0%	probably_damaging(0.971)	deleterious(0.04)	deleterious(0.762)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
UBAP2	55833	genome.wustl.edu	37	9	33943450	33943450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018449.2	-1	reviewed	p.Q561H	0.998	342	0%	160	17.5%	13	23%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIF24	347240	genome.wustl.edu	37	9	34257882	34257882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194313.2	-1	validated	p.P575T	0.952	196	0%	142	9.9%	1	0%	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	NULL
RPP25L	138716	genome.wustl.edu	37	9	34611253	34611253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_148178.1	-1	validated	p.A14V	0.001	168	0%	197	15.7%	73	28.7%	benign(0.071)	tolerated(0.52)	neutral(0.014)	NULL
IL11RA	3590	genome.wustl.edu	37	9	34655266	34655266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142784.1	+1	reviewed	p.A18S	1.000	32	0%	44	22.7%	2	100%	unknown(0)	deleterious(0.01)	-	NULL
IL11RA	3590	genome.wustl.edu	37	9	34655615	34655615	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142784.1	+1	reviewed	p.G38	0.996	141	0%	169	13.6%	6	16.6%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
FAM205B	389715	genome.wustl.edu	37	9	34837671	34837671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000399773	-1	known	p.A57D	0.014	474	0.2%	258	19%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
VCP	7415	genome.wustl.edu	37	9	35059202	35059202	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007126.3	-1	reviewed	p.E673	1.000	264	0%	190	26.8%	501	37.9%	-	-	-	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
VCP	7415	genome.wustl.edu	37	9	35061638	35061638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007126.3	-1	reviewed	p.R377H	1.000	634	0%	420	20.7%	329	40.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
VCP	7415	genome.wustl.edu	37	9	35064180	35064180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007126.3	-1	reviewed	p.P227T	1.000	384	0.3%	281	19.6%	168	36.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
VCP	7415	genome.wustl.edu	37	9	35068312	35068312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007126.3	-1	reviewed	p.R22H	1.000	313	0%	313	15.3%	83	20.4%	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_CDC48_N,superfamily_ADC-like
FANCG	2189	genome.wustl.edu	37	9	35075722	35075722	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004629.1	-1	reviewed	p.P391	0.269	86	0%	96	16.7%	29	41.3%	-	-	-	superfamily_TPR-like
FANCG	2189	genome.wustl.edu	37	9	35077382	35077382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004629.1	-1	reviewed	p.K175N	0.955	228	0%	215	27.9%	22	50%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
PIGO	84720	genome.wustl.edu	37	9	35089413	35089413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032634.2	-1	reviewed	p.R1035H	1.000	454	0%	304	24.3%	48	43.7%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
PIGO	84720	genome.wustl.edu	37	9	35091260	35091260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032634.2	-1	reviewed	p.A875V	1.000	253	0%	156	18.6%	63	33.3%	benign(0.002)	tolerated(0.49)	neutral(0.011)	NULL
PIGO	84720	genome.wustl.edu	37	9	35091480	35091480	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032634.2	-1	reviewed	p.R802*	1.000	107	0%	82	14.6%	10	10%	-	-	-	NULL
STOML2	30968	genome.wustl.edu	37	9	35101777	35101777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013442.1	-1	provisional	p.A125V	1.000	298	0.3%	296	23.3%	286	46.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Band_7,HMMSmart_PHB
FAM214B	80256	genome.wustl.edu	37	9	35105816	35105816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025182.2	-1	predicted	p.F442L	1.000	297	0.3%	342	12.3%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC730110	730110	genome.wustl.edu	37	9	35148582	35148582	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342891.1	-1	model	p.P200	0.987	172	0%	124	16.1%	1	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
UNC13B	10497	genome.wustl.edu	37	9	35236477	35236477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006377.3	+1	reviewed	p.R55H	1.000	502	0%	175	21.7%	1	0%	benign(0.026)	deleterious(0.03)	neutral(0.365)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
RUSC2	9853	genome.wustl.edu	37	9	35560765	35560765	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135999.1	+1	validated	p.A1376	0.000	12	0%	20	35%	7	0%	-	-	-	NULL
TPM2	7169	genome.wustl.edu	37	9	35682156	35682156	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213674.1	-1	reviewed	p.T259	1.000	128	0%	119	22.7%	395	27.8%	-	-	-	HMMPfam_Tropomyosin
TLN1	7094	genome.wustl.edu	37	9	35704393	35704393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006289.3	-1	reviewed	p.T1995A	1.000	243	0%	155	20%	116	37.9%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
TLN1	7094	genome.wustl.edu	37	9	35708404	35708404	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006289.3	-1	reviewed	p.A1468	1.000	113	0%	75	24%	52	0%	-	-	-	superfamily_SSF109885
TLN1	7094	genome.wustl.edu	37	9	35719097	35719097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006289.3	-1	reviewed	p.R624C	1.000	35	0%	26	23.1%	18	38.8%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_Talin_middle,superfamily_Talin_cent
TLN1	7094	genome.wustl.edu	37	9	35720093	35720093	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006289.3	-1	reviewed	p.P469	0.385	104	0%	71	19.7%	25	0%	-	-	-	NULL
TLN1	7094	genome.wustl.edu	37	9	35724324	35724324	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006289.3	-1	reviewed	p.W173*	1.000	130	0%	114	26.3%	12	0%	-	-	-	HMMPfam_FERM_N,PatternScan_FERM_1,HMMSmart_B41,superfamily_SSF54236
GBA2	57704	genome.wustl.edu	37	9	35741839	35741839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020944.2	-1	reviewed	p.L206M	1.000	172	0%	165	21.8%	11	27.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NPR2	4882	genome.wustl.edu	37	9	35792411	35792411	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003995.3	+1	reviewed	p.A2	0.997	64	0%	71	18.3%	0	-	-	-	-	NULL
NPR2	4882	genome.wustl.edu	37	9	35809392	35809392	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003995.3	+1	reviewed	p.R1032*	1.000	261	0%	221	22.6%	7	14.2%	-	-	-	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain
C9orf128	392307	genome.wustl.edu	37	9	35825877	35825877	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012446.2	-1	validated	p.L94	0.004	243	0%	296	25.3%	0	-	-	-	-	NULL
C9orf128	392307	genome.wustl.edu	37	9	35826074	35826074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012446.2	-1	validated	p.D29Y	0.976	165	0%	228	17.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RECK	8434	genome.wustl.edu	37	9	36087808	36087808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021111.2	+1	reviewed	p.T252I	0.954	299	0%	84	23.8%	0	-	possibly_damaging(0.836)	tolerated(0.1)	deleterious(0.606)	NULL
RECK	8434	genome.wustl.edu	37	9	36108127	36108127	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021111.2	+1	reviewed	p.L577	0.951	348	0%	212	17.5%	0	-	-	-	-	NULL
CCIN	881	genome.wustl.edu	37	9	36170194	36170194	+	Missense_Mutation	SNP	C	C	T	rs147304766	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005893.2	+1	reviewed	p.T232M	0.953	62	0%	48	33.3%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_BACK
RNF38	152006	genome.wustl.edu	37	9	36376030	36376030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022781.4	-1	reviewed	p.P86L	1.000	537	0%	259	26.3%	10	30%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MELK	9833	genome.wustl.edu	37	9	36630336	36630336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014791.2	+1	provisional	p.S236I	0.993	421	0%	201	20.4%	30	46.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PAX5	5079	genome.wustl.edu	37	9	36882027	36882027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016734.1	-1	reviewed	p.A329V	0.999	48	0%	31	32.3%	0	-	unknown(0)	deleterious(0)	-	NULL
ZCCHC7	84186	genome.wustl.edu	37	9	37305609	37305609	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032226.2	+1	validated	p.C283	1.000	391	0%	197	26.9%	19	47.3%	-	-	-	superfamily_Retrovirus zinc finger-like domains
FBXO10	26267	genome.wustl.edu	37	9	37537191	37537191	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012166.2	-1	validated	p.F445	0.825	42	0%	28	35.7%	0	-	-	-	-	HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like
FRMPD1	22844	genome.wustl.edu	37	9	37731053	37731053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014907.2	+1	validated	p.D271N	0.998	254	0%	140	17.1%	0	-	possibly_damaging(0.824)	tolerated(0.2)	neutral(0.361)	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
FRMPD1	22844	genome.wustl.edu	37	9	37733588	37733588	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014907.2	+1	validated	p.R372*	1.000	282	0%	180	31.1%	0	-	-	-	-	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
FRMPD1	22844	genome.wustl.edu	37	9	37733763	37733763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014907.2	+1	validated	p.L387I	1.000	608	0%	377	18.8%	0	-	probably_damaging(0.988)	tolerated(0.06)	deleterious(0.760)	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
FRMPD1	22844	genome.wustl.edu	37	9	37740712	37740712	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014907.2	+1	validated	p.R729	0.226	37	0%	35	11.4%	0	-	-	-	-	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37744561	37744561	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014907.2	+1	validated	p.T844	0.365	113	0%	114	15.8%	0	-	-	-	-	NULL
ALDH1B1	219	genome.wustl.edu	37	9	38396762	38396762	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000692.3	+1	reviewed	p.T339	0.257	171	0%	98	15.3%	24	29.1%	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
C9orf51	647044	genome.wustl.edu	37	9	38527781	38527781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000377689	+1	known	p.D230Y	0.018	149	0%	245	18%	0	-	benign(0.076)	deleterious(0.01)	neutral(0.411)	NULL
ZNF658	26149	genome.wustl.edu	37	9	40774424	40774424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033160.5	-1	validated	p.A284D	0.000	839	0.1%	272	15.1%	1	0%	benign(0.009)	deleterious(0.01)	neutral(0.406)	superfamily_C2H2 and C2HC zinc fingers
ZNF658	26149	genome.wustl.edu	37	9	40784561	40784561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033160.5	-1	validated	p.E20K	0.994	271	0%	163	18.4%	1	0%	possibly_damaging(0.945)	tolerated(0.05)	deleterious(0.735)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ENSG00000221917	0	genome.wustl.edu	37	9	69440235	69440235	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000333394	+1	known	p.L107	0.073	150	0%	60	10%	0	-	-	-	-	NULL
PGM5	5239	genome.wustl.edu	37	9	70993224	70993224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021965.3	+1	validated	p.C124Y	1.000	389	0%	103	11.7%	3	66.6%	benign(0.025)	deleterious(0)	neutral(0.446)	HMMPfam_PGM_PMM_I,superfamily_Phosphoglucomutase first 3 domains,PatternScan_PGM_PMM,PatternScan_TRYPSIN_HIS
FAM122A	116224	genome.wustl.edu	37	9	71395725	71395725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138333.3	+1	validated	p.K215N	1.000	202	0%	281	24.9%	17	29.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PTAR1	375743	genome.wustl.edu	37	9	72347118	72347118	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099666.1	-1	validated	p.S193	1.000	309	0%	71	16.9%	1	0%	-	-	-	HMMPfam_PPTA,superfamily_Prenyl_trans
C9orf135	138255	genome.wustl.edu	37	9	72472895	72472895	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010940.1	+1	validated	e4+2	0.997	315	0%	74	17.6%	0	-	-	-	-	-
SMC5	23137	genome.wustl.edu	37	9	72892281	72892281	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015110.3	+1	validated	p.Q146*	1.000	304	0%	232	20.7%	1	0%	-	-	-	HMMPfam_SMC_N,superfamily_SSF52540
KLF9	687	genome.wustl.edu	37	9	73027796	73027796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001206.2	-1	reviewed	p.A162T	1.000	89	1.1%	110	26.4%	2	0%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TRPM3	80036	genome.wustl.edu	37	9	73151027	73151027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007471.2	-1	reviewed	p.I1656V	1.000	279	0%	196	24%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	NULL
TRPM3	80036	genome.wustl.edu	37	9	73151792	73151792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007471.2	-1	reviewed	p.D1401N	1.000	265	0%	158	22.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
TRPM3	80036	genome.wustl.edu	37	9	73457904	73457904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000377097	-1	known	p.A162D	0.000	150	0%	100	27%	0	-	-	-	-	NULL
TMEM2	23670	genome.wustl.edu	37	9	74324191	74324191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013390.2	-1	validated	p.S990N	1.000	422	0%	156	21.2%	11	27.2%	probably_damaging(0.998)	tolerated(0.22)	deleterious(0.516)	NULL
TMEM2	23670	genome.wustl.edu	37	9	74324338	74324338	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013390.2	-1	validated	p.E941V	1.000	389	0%	141	24.1%	5	0%	possibly_damaging(0.677)	deleterious(0.03)	deleterious(0.605)	NULL
TMEM2	23670	genome.wustl.edu	37	9	74349722	74349722	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013390.2	-1	validated	p.E465*	1.000	414	0%	162	22.8%	1	0%	-	-	-	NULL
FAM108B1	51104	genome.wustl.edu	37	9	74481811	74481811	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016014.2	-1	validated	p.P253	1.000	168	0%	81	19.8%	10	20%	-	-	-	superfamily_SSF53474
TMC1	117531	genome.wustl.edu	37	9	75450886	75450886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138691.2	+1	reviewed	p.Q760H	0.999	185	0%	197	28.9%	0	-	unknown(0)	deleterious(0)	-	NULL
TRPM6	140803	genome.wustl.edu	37	9	77376985	77376985	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017662.4	-1	reviewed	p.R1534	0.000	380	0%	161	19.9%	1	0%	-	-	-	NULL
TRPM6	140803	genome.wustl.edu	37	9	77473640	77473640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017662.4	-1	reviewed	p.V20L	0.999	439	0%	546	11.2%	0	-	unknown(0)	tolerated(0.11)	-	NULL
C9orf41	138199	genome.wustl.edu	37	9	77614697	77614697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152420.1	-1	predicted	p.G227V	1.000	310	0%	165	25.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_N2227,superfamily_SSF53335
PCSK5	5125	genome.wustl.edu	37	9	78686802	78686802	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006200.3	+1	reviewed	p.N294	0.512	65	0%	43	18.6%	2	50%	-	-	-	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like
PRUNE2	158471	genome.wustl.edu	37	9	79319877	79319877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015225.2	-1	validated	p.R2438I	0.000	159	0%	55	16.4%	1	100%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79934542	79934542	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033305.2	+1	reviewed	p.E1790*	1.000	256	0%	131	24.4%	1	100%	-	-	-	NULL
VPS13A	23230	genome.wustl.edu	37	9	79938056	79938056	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000419472	+1	known	p.T221I	1.000	239	0%	53	18.9%	1	0%	-	-	-	NULL
GNA14	9630	genome.wustl.edu	37	9	80049401	80049401	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004297.3	-1	reviewed	p.K116T	1.000	261	0%	148	19.6%	1	0%	benign(0)	tolerated(0.8)	neutral(0.001)	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
PSAT1	29968	genome.wustl.edu	37	9	80919840	80919840	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_058179.2	+1	reviewed	p.K127	1.000	211	0.5%	148	12.2%	222	39.6%	-	-	-	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
PSAT1	29968	genome.wustl.edu	37	9	80923405	80923405	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_058179.2	+1	reviewed	p.L216	1.000	418	0%	280	20.4%	258	73.6%	-	-	-	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
TLE4	7091	genome.wustl.edu	37	9	82324604	82324604	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007005.3	+1	validated	p.G444*	1.000	163	0%	155	23.9%	3	0%	-	-	-	superfamily_WD40 repeat-like
TLE4	7091	genome.wustl.edu	37	9	82337915	82337915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007005.3	+1	validated	p.A727T	1.000	407	0%	270	18.5%	4	0%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FAM75D1	389763	genome.wustl.edu	37	9	84608806	84608806	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001670.2	+1	validated	p.Q1141*	0.001	159	0%	71	28.2%	0	-	-	-	-	NULL
FAM75D1	389763	genome.wustl.edu	37	9	84609430	84609430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001670.2	+1	validated	p.L1349I	0.000	76	0%	49	30.6%	0	-	possibly_damaging(0.539)	tolerated(0.49)	neutral(0.193)	NULL
RASEF	158158	genome.wustl.edu	37	9	85611989	85611989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152573.2	-1	provisional	p.L620M	1.000	591	0%	171	19.9%	3	100%	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RASEF	158158	genome.wustl.edu	37	9	85622385	85622385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152573.2	-1	provisional	p.R332Q	1.000	644	0.2%	293	25.9%	1	0%	probably_damaging(1)	tolerated(0.47)	deleterious(0.511)	NULL
RASEF	158158	genome.wustl.edu	37	9	85630720	85630720	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152573.2	-1	provisional	p.K255	1.000	364	0%	236	16.5%	0	-	-	-	-	NULL
FRMD3	257019	genome.wustl.edu	37	9	85863361	85863361	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174938.4	-1	validated	p.R422	0.001	166	0%	116	26.7%	3	0%	-	-	-	NULL
FRMD3	257019	genome.wustl.edu	37	9	85925406	85925406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174938.4	-1	validated	p.Q277H	1.000	369	0%	361	22.2%	1	0%	probably_damaging(0.961)	tolerated(0.12)	deleterious(0.665)	HMMPfam_FERM_C,superfamily_PH domain-like
UBQLN1	29979	genome.wustl.edu	37	9	86294875	86294875	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013438.4	-1	reviewed	p.Q176*	1.000	205	0%	147	19.7%	23	0%	-	-	-	NULL
KIF27	55582	genome.wustl.edu	37	9	86518264	86518264	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017576.1	-1	provisional	p.D390A	0.985	281	0%	161	17.4%	2	50%	possibly_damaging(0.907)	tolerated(0.13)	deleterious(0.613)	NULL
RMI1	80010	genome.wustl.edu	37	9	86616829	86616829	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024945.2	+1	validated	p.E310*	0.894	177	0%	70	22.9%	20	45%	-	-	-	NULL
SLC28A3	64078	genome.wustl.edu	37	9	86912922	86912922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022127.1	-1	provisional	p.P228S	1.000	326	0%	98	29.6%	1	100%	benign(0.057)	tolerated(0.3)	neutral(0.032)	HMMPfam_Nucleos_tra2_N
AGTPBP1	23287	genome.wustl.edu	37	9	88193856	88193856	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015239.2	-1	validated	p.G1067	0.996	357	0%	355	22.8%	14	14.2%	-	-	-	HMMPfam_Peptidase_M14,superfamily_SSF53187
AGTPBP1	23287	genome.wustl.edu	37	9	88200431	88200431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015239.2	-1	validated	p.H998Y	1.000	288	0%	194	18%	19	26.3%	possibly_damaging(0.602)	tolerated(0.29)	neutral(0.237)	HMMPfam_Peptidase_M14,superfamily_SSF53187
AGTPBP1	23287	genome.wustl.edu	37	9	88236145	88236145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015239.2	-1	validated	p.R651C	1.000	128	0%	72	12.5%	9	11.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
AGTPBP1	23287	genome.wustl.edu	37	9	88247609	88247609	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015239.2	-1	validated	p.E621	0.999	168	0%	57	14%	6	33.3%	-	-	-	NULL
LOC100129901	100129901	genome.wustl.edu	37	9	88396228	88396228	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001716099.2	+1	model	p.K31T	1.000	321	0%	189	19.6%	4	25%	-	-	-	NULL
NAA35	60560	genome.wustl.edu	37	9	88633682	88633682	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024635.3	+1	validated	p.K661	1.000	354	0%	156	22.4%	19	21%	-	-	-	NULL
GOLM1	51280	genome.wustl.edu	37	9	88692495	88692495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016548.3	-1	reviewed	p.M47I	0.980	124	0%	94	18.1%	33	39.3%	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
C9orf153	389766	genome.wustl.edu	37	9	88842850	88842850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010907.1	-1	predicted	p.Q54H	0.421	442	0%	107	19.6%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
DAPK1	1612	genome.wustl.edu	37	9	90321119	90321119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004938.2	+1	reviewed	p.L1045M	1.000	52	0%	55	20%	22	45.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C9orf79	286234	genome.wustl.edu	37	9	90499880	90499880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178828.4	+1	validated	p.D160Y	0.002	44	0%	44	11.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SHC3	53358	genome.wustl.edu	37	9	91680458	91680458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016848.4	-1	validated	p.P274H	1.000	257	0%	141	26.2%	2	100%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
SECISBP2	79048	genome.wustl.edu	37	9	91973698	91973698	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024077.3	+1	reviewed	p.L842V	0.017	439	0%	384	21.6%	20	45%	probably_damaging(0.979)	tolerated(0.11)	deleterious(0.694)	NULL
SEMA4D	10507	genome.wustl.edu	37	9	92002499	92002499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006378.3	-1	validated	p.A378T	0.938	233	0%	234	21.8%	30	30%	benign(0.051)	tolerated(0.57)	neutral(0.009)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
NFIL3	4783	genome.wustl.edu	37	9	94171907	94171907	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005384.2	-1	validated	p.A370	0.000	221	0%	231	22.1%	23	43.4%	-	-	-	HMMPfam_Vert_IL3-reg_TF
NFIL3	4783	genome.wustl.edu	37	9	94172352	94172352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005384.2	-1	validated	p.P222L	0.995	286	0.3%	333	19.5%	14	35.7%	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMPfam_Vert_IL3-reg_TF
ROR2	4920	genome.wustl.edu	37	9	94486010	94486010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004560.2	-1	reviewed	p.E922D	1.000	55	0%	70	17.1%	1	100%	possibly_damaging(0.787)	deleterious(0)	deleterious(0.739)	NULL
ROR2	4920	genome.wustl.edu	37	9	94487141	94487141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004560.2	-1	reviewed	p.K545N	0.995	62	0%	55	21.8%	2	0%	probably_damaging(0.983)	tolerated(0.23)	deleterious(0.470)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
ROR2	4920	genome.wustl.edu	37	9	94488879	94488879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004560.2	-1	reviewed	p.L444M	1.000	76	0%	58	10.3%	0	-	possibly_damaging(0.86)	tolerated(0.22)	neutral(0.374)	NULL
IARS	3376	genome.wustl.edu	37	9	95050457	95050457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002161.4	-1	reviewed	p.G76E	1.000	239	0%	190	22.6%	13	53.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1,superfamily_SSF52374
NOL8	55035	genome.wustl.edu	37	9	95085569	95085569	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_024020.1	-1	validated	NULL	0.000	111	0%	111	26.1%	0	-	-	-	-	-
CENPP	401541	genome.wustl.edu	37	9	95107991	95107991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012267.1	+1	validated	p.R130I	0.003	257	0%	279	16.5%	3	66.6%	possibly_damaging(0.5)	tolerated(0.13)	neutral(0.419)	NULL
OGN	4969	genome.wustl.edu	37	9	95148028	95148028	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014057.3	-1	reviewed	p.A257	0.993	292	0%	131	22.1%	1	0%	-	-	-	superfamily_L domain-like
ECM2	1842	genome.wustl.edu	37	9	95284931	95284931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001393.2	-1	reviewed	p.D73G	0.063	626	0%	354	13.8%	3	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ZNF484	83744	genome.wustl.edu	37	9	95608929	95608929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031486.1	-1	provisional	p.H714N	1.000	217	0%	174	18.4%	2	0%	possibly_damaging(0.545)	deleterious(0)	deleterious(0.629)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF484	83744	genome.wustl.edu	37	9	95609569	95609569	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031486.1	-1	provisional	p.V500	0.472	324	0%	219	24.2%	1	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF484	83744	genome.wustl.edu	37	9	95610411	95610411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031486.1	-1	provisional	p.V220M	0.000	347	0%	192	25%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	superfamily_SSF57667
FGD3	89846	genome.wustl.edu	37	9	95772575	95772575	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083536.1	+1	validated	p.E295	1.000	43	0%	22	36.4%	5	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
FGD3	89846	genome.wustl.edu	37	9	95782705	95782705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083536.1	+1	validated	p.P498H	0.481	146	0%	104	22.1%	17	0%	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	superfamily_FYVE/PHD zinc finger
SUSD3	203328	genome.wustl.edu	37	9	95838074	95838074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145006.2	+1	provisional	p.A33T	0.000	38	0%	35	20%	4	0%	benign(0.004)	tolerated(0.48)	neutral(0.011)	HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SUSD3	203328	genome.wustl.edu	37	9	95840225	95840225	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145006.2	+1	provisional	p.T125	1.000	99	0%	115	16.5%	15	6.6%	-	-	-	NULL
WNK2	65268	genome.wustl.edu	37	9	96061356	96061356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006648.3	+1	reviewed	p.H1976Q	1.000	24	0%	23	26.1%	11	27.2%	probably_damaging(0.983)	tolerated(0.06)	deleterious(0.752)	NULL
FAM120A	23196	genome.wustl.edu	37	9	96233517	96233517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014612.3	+1	validated	p.A190V	1.000	258	0.4%	105	27.6%	57	35%	possibly_damaging(0.915)	tolerated(0.46)	neutral(0.379)	superfamily_PIN domain-like
FAM120A	23196	genome.wustl.edu	37	9	96294606	96294606	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000446420	+1	known	p.Q478*	1.000	125	0%	81	30.9%	43	44.1%	benign(0.003)	tolerated(0.62)	neutral(0.004)	NULL
FAM120A	23196	genome.wustl.edu	37	9	96318700	96318700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014612.3	+1	validated	p.A771S	0.999	219	1.4%	168	28%	62	48.3%	benign(0.393)	tolerated(0.57)	neutral(0.132)	NULL
PHF2	5253	genome.wustl.edu	37	9	96415578	96415578	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005392.3	+1	reviewed	p.C240	0.985	120	0%	89	21.3%	16	43.7%	-	-	-	HMMSmart_JmjC,HMMPfam_JmjC,superfamily_SSF51197
ZNF169	169841	genome.wustl.edu	37	9	97062307	97062307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194320.2	+1	validated	p.R156M	0.000	190	0%	55	21.8%	0	-	benign(0.3)	tolerated(0.09)	neutral(0.389)	NULL
ZNF169	169841	genome.wustl.edu	37	9	97062685	97062685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194320.2	+1	validated	p.R282M	1.000	130	0%	48	31.2%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FBP1	2203	genome.wustl.edu	37	9	97365684	97365684	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000507.3	-1	reviewed	p.Y332	0.000	104	0%	79	20.3%	52	3.8%	-	-	-	HMMPfam_FBPase,superfamily_Carbohydrate phosphatase
FANCC	2176	genome.wustl.edu	37	9	97869460	97869460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000136.2	-1	reviewed	p.G474D	0.000	413	0%	387	25.1%	8	25%	benign(0.001)	tolerated(0.65)	neutral(0.003)	HMMPfam_Fanconi_C
PTCH1	5727	genome.wustl.edu	37	9	98211390	98211390	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000264.3	-1	reviewed	p.I1255	0.812	41	0%	44	18.2%	1	100%	-	-	-	NULL
PTCH1	5727	genome.wustl.edu	37	9	98224162	98224162	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000264.3	-1	reviewed	p.R893	0.015	218	0%	183	29%	5	0%	-	-	-	HMMPfam_Patched
PTCH1	5727	genome.wustl.edu	37	9	98231257	98231257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000264.3	-1	reviewed	p.Y676H	1.000	312	0%	247	21.9%	0	-	possibly_damaging(0.883)	tolerated(0.48)	neutral(0.355)	HMMPfam_Patched
PTCH1	5727	genome.wustl.edu	37	9	98242843	98242843	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000264.3	-1	reviewed	p.N258	1.000	327	0%	235	16.2%	2	0%	unknown(0)	tolerated(0.12)	-	HMMPfam_Patched
C9orf102	375748	genome.wustl.edu	37	9	98683520	98683520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010895.2	+1	validated	p.D419N	1.000	373	0%	126	18.3%	1	0%	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	HMMPfam_SNF2_N
C9orf102	375748	genome.wustl.edu	37	9	98728963	98728963	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000402838	+1	known	p.P11L	0.944	356	0%	94	22.3%	0	-	-	-	-	NULL
HSD17B3	3293	genome.wustl.edu	37	9	99012069	99012069	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000197.1	-1	reviewed	e6-1	0.994	405	0%	168	19.6%	0	-	-	-	-	-
HABP4	22927	genome.wustl.edu	37	9	99220766	99220766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014282.2	+1	validated	p.R152Q	0.940	158	0%	137	15.3%	7	14.2%	unknown(0)	deleterious(0.03)	-	NULL
HABP4	22927	genome.wustl.edu	37	9	99227630	99227630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014282.2	+1	validated	p.R175M	1.000	242	0%	177	22%	12	41.6%	probably_damaging(0.982)	tolerated(0.09)	deleterious(0.723)	NULL
ZNF510	22869	genome.wustl.edu	37	9	99521735	99521735	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014930.1	-1	provisional	p.P459	0.795	318	0%	161	26.1%	2	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF782	158431	genome.wustl.edu	37	9	99589420	99589420	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000289032	-1	known	p.R51G	1.000	345	0%	118	16.1%	0	-	-	-	-	NULL
ZNF782	158431	genome.wustl.edu	37	9	99607217	99607217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001662.1	-1	provisional	p.Y33H	0.999	196	0%	134	11.9%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
FAM22G	441457	genome.wustl.edu	37	9	99701016	99701016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000372322	+1	known	p.P604L	0.006	299	0%	222	15.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CTSL2	1515	genome.wustl.edu	37	9	99795269	99795269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001333.2	-1	reviewed	p.C323R	1.000	330	0%	351	19.7%	18	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
C9orf174	100499483	genome.wustl.edu	37	9	100070368	100070368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020893.1	+1	predicted	p.T191I	0.676	58	0%	49	32.7%	3	0%	probably_damaging(0.976)	tolerated(0.06)	deleterious(0.740)	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100124716	100124716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020893.1	+1	predicted	p.A1277T	0.000	117	0%	91	25.3%	1	100%	benign(0.005)	tolerated(0.07)	neutral(0.319)	NULL
XPA	7507	genome.wustl.edu	37	9	100437843	100437843	+	Missense_Mutation	SNP	C	C	T	rs3176749	byCluster;byFrequency;by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000380.3	-1	reviewed	p.V234M	0.133	268	0%	139	20.1%	16	62.5%	benign(0.02)	tolerated(0.14)	neutral(0.251)	NULL
HEMGN	55363	genome.wustl.edu	37	9	100692687	100692687	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018437.3	-1	validated	p.N330	0.127	873	0%	788	20.6%	0	-	-	-	-	NULL
ANP32B	10541	genome.wustl.edu	37	9	100773654	100773654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006401.2	+1	validated	p.D207N	0.999	1036	0%	352	10.5%	613	21.8%	unknown(0)	tolerated(0.24)	-	NULL
TBC1D2	55357	genome.wustl.edu	37	9	100965671	100965671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018421.3	-1	validated	p.L724M	1.000	126	0%	108	18.5%	20	55%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
TBC1D2	55357	genome.wustl.edu	37	9	100995759	100995759	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018421.3	-1	validated	p.S240	0.000	351	0%	168	19.6%	10	70%	-	-	-	NULL
TBC1D2	55357	genome.wustl.edu	37	9	101014164	101014164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018421.3	-1	validated	p.Q138H	1.000	51	0%	65	18.5%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
GABBR2	9568	genome.wustl.edu	37	9	101053032	101053032	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005458.7	-1	reviewed	e19-1	1.000	162	0%	124	21.8%	0	-	-	-	-	-
GABBR2	9568	genome.wustl.edu	37	9	101304300	101304300	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005458.7	-1	reviewed	p.V162G	0.997	122	0%	38	18.4%	0	-	benign(0.007)	tolerated(0.13)	neutral(0.253)	HMMPfam_ANF_receptor,superfamily_SSF53822
GALNT12	79695	genome.wustl.edu	37	9	101585579	101585579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024642.3	+1	validated	p.T138I	0.996	263	0%	244	21.3%	7	14.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Nucleotide-diphospho-sugar transferases
GALNT12	79695	genome.wustl.edu	37	9	101594053	101594053	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024642.3	+1	validated	e4-1	1.000	260	0%	196	16.8%	1	0%	-	-	-	-
COL15A1	1306	genome.wustl.edu	37	9	101763227	101763227	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001855.3	+1	reviewed	p.E353D	0.004	153	0%	110	23.6%	7	0%	benign(0.157)	tolerated(0.61)	neutral(0.018)	NULL
COL15A1	1306	genome.wustl.edu	37	9	101816919	101816919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001855.3	+1	reviewed	p.Q1004H	0.999	408	0%	161	19.3%	21	0%	probably_damaging(0.992)	-	-	HMMPfam_Collagen,superfamily_C-type_lectin_fold
TGFBR1	7046	genome.wustl.edu	37	9	101894795	101894795	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004612.2	+1	reviewed	p.K116	1.000	207	0%	58	22.4%	4	50%	-	-	-	superfamily_Snake toxin-like
TGFBR1	7046	genome.wustl.edu	37	9	101894984	101894984	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004612.2	+1	reviewed	p.D179	0.965	182	0%	47	21.3%	4	25%	-	-	-	HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like)
TGFBR1	7046	genome.wustl.edu	37	9	101910042	101910042	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004612.2	+1	reviewed	p.I454	1.000	231	0%	55	21.8%	2	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KRT8P11	347265	genome.wustl.edu	37	9	102068286	102068286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000409686	+1	known	p.Y298C	1.000	32	0%	36	22.2%	0	-	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	HMMPfam_Filament
KRT8P11	347265	genome.wustl.edu	37	9	102068869	102068869	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000409686	+1	known	p.E492	1.000	32	0%	39	41%	0	-	-	-	-	NULL
NR4A3	8013	genome.wustl.edu	37	9	102590493	102590493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173200.1	+1	reviewed	p.S68G	1.000	96	0%	94	21.3%	0	-	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	NULL
NR4A3	8013	genome.wustl.edu	37	9	102606952	102606952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173200.1	+1	reviewed	p.A437T	0.026	155	0%	79	24.1%	0	-	benign(0)	tolerated(0.76)	neutral(0.001)	superfamily_Str_ncl_receptor
TEX10	54881	genome.wustl.edu	37	9	103070854	103070854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017746.3	-1	validated	p.A798V	1.000	207	0%	83	20.5%	64	50%	possibly_damaging(0.952)	tolerated(0.3)	neutral(0.424)	NULL
TEX10	54881	genome.wustl.edu	37	9	103109264	103109264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017746.3	-1	validated	p.R202I	1.000	194	0%	181	10.5%	10	60%	possibly_damaging(0.454)	tolerated(0.08)	neutral(0.449)	NULL
BAAT	570	genome.wustl.edu	37	9	104125077	104125077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127610.1	-1	reviewed	p.R297H	0.000	266	0.8%	63	12.7%	0	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	HMMPfam_BAAT_C,superfamily_SSF53474
ZNF189	7743	genome.wustl.edu	37	9	104171853	104171853	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003452.2	+1	validated	p.C601	1.000	193	0%	58	19%	14	57.1%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C9orf125	84302	genome.wustl.edu	37	9	104238826	104238826	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032342.1	-1	provisional	p.S183	0.003	98	0%	79	19%	9	100%	-	-	-	NULL
SMC2	10592	genome.wustl.edu	37	9	106882397	106882397	+	Missense_Mutation	SNP	C	C	T	rs145598831	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042550.1	+1	validated	p.R696W	0.014	196	0%	52	25%	13	46.1%	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC2	10592	genome.wustl.edu	37	9	106887315	106887315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042550.1	+1	validated	p.A794T	1.000	232	0%	65	15.4%	24	33.3%	benign(0.258)	deleterious(0.01)	neutral(0.433)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR13C5	138799	genome.wustl.edu	37	9	107361454	107361454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004482.1	-1	provisional	p.T81A	0.000	673	0%	122	13.9%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR13C9	286362	genome.wustl.edu	37	9	107380331	107380331	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001956.1	-1	provisional	p.D52V	0.007	661	0%	245	24.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
ABCA1	19	genome.wustl.edu	37	9	107576501	107576501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005502.2	-1	reviewed	p.P1267S	1.000	80	0%	46	28.3%	2	0%	benign(0.05)	tolerated(0.16)	neutral(0.062)	NULL
ABCA1	19	genome.wustl.edu	37	9	107593329	107593329	+	Nonsense_Mutation	SNP	C	C	T	rs137854496		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005502.2	-1	reviewed	p.W590*	1.000	144	0%	79	12.7%	4	0%	-	-	-	NULL
ABCA1	19	genome.wustl.edu	37	9	107595036	107595036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005502.2	-1	reviewed	p.R443M	0.989	271	0.4%	128	14.8%	1	0%	benign(0.257)	tolerated(0.13)	neutral(0.279)	NULL
SLC44A1	23446	genome.wustl.edu	37	9	108118546	108118546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080546.3	+1	validated	p.A185V	1.000	378	0%	394	20.3%	21	47.6%	benign(0.124)	tolerated(0.23)	neutral(0.052)	NULL
FSD1L	83856	genome.wustl.edu	37	9	108246663	108246663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145313.1	+1	validated	p.V156F	1.000	176	0.6%	127	13.4%	2	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00502
ZNF462	58499	genome.wustl.edu	37	9	109686673	109686673	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021224.4	+1	validated	p.K160	1.000	58	0%	72	27.8%	0	-	-	-	-	NULL
ZNF462	58499	genome.wustl.edu	37	9	109694551	109694551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000441147	+1	known	p.A852V	1.000	19	0%	25	24%	3	66.6%	possibly_damaging(0.93)	tolerated(0.13)	deleterious(0.629)	NULL
ZNF462	58499	genome.wustl.edu	37	9	109694791	109694791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021224.4	+1	validated	p.S2026I	1.000	172	0%	132	23.5%	6	66.6%	benign(0.323)	tolerated(0.1)	neutral(0.387)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24
RAD23B	5887	genome.wustl.edu	37	9	110068897	110068897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002874.3	+1	reviewed	p.P156S	1.000	137	0%	81	25.9%	116	36.2%	unknown(0)	deleterious(0.02)	-	NULL
RAD23B	5887	genome.wustl.edu	37	9	110081148	110081148	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000457811	+1	known	p.S93N	1.000	269	0.4%	157	25.5%	107	39.2%	-	-	-	HMMPfam_UBA,superfamily_UBA-like,HMMSmart_SM00165
RAD23B	5887	genome.wustl.edu	37	9	110087223	110087223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002874.3	+1	reviewed	p.A352S	1.000	333	0%	187	21.9%	133	41.3%	benign(0.096)	tolerated(0.46)	neutral(0.019)	NULL
ACTL7B	10880	genome.wustl.edu	37	9	111618158	111618158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006686.3	-1	reviewed	p.G18E	0.842	63	0%	74	20.3%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
ACTL7A	10881	genome.wustl.edu	37	9	111625230	111625230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006687.2	+1	reviewed	p.G210R	1.000	97	0%	87	17.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
IKBKAP	8518	genome.wustl.edu	37	9	111655308	111655308	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003640.3	-1	reviewed	p.N972	0.022	359	0.6%	160	21.2%	17	58.8%	-	-	-	NULL
IKBKAP	8518	genome.wustl.edu	37	9	111679924	111679924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003640.3	-1	reviewed	p.T256I	1.000	514	0%	371	19.1%	11	54.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_IKI3,superfamily_Amine_DH_B_like
FRRS1L	23732	genome.wustl.edu	37	9	111899813	111899813	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014334.2	-1	validated	p.A319	1.000	226	0%	117	23.9%	0	-	-	-	-	NULL
PTPN3	5774	genome.wustl.edu	37	9	112141791	112141791	+	RNA	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_026918.1	-1	reviewed	NULL	0.001	182	0%	94	31.9%	21	9.5%	-	-	-	-
PTPN3	5774	genome.wustl.edu	37	9	112144049	112144049	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002829.3	-1	reviewed	p.T849	0.097	284	0%	149	21.5%	23	73.9%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_PTPc,PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799
PTPN3	5774	genome.wustl.edu	37	9	112166753	112166753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002829.3	-1	reviewed	p.S643N	0.998	172	0%	97	15.5%	8	50%	possibly_damaging(0.748)	tolerated(0.05)	deleterious(0.620)	superfamily_SSF52799
PTPN3	5774	genome.wustl.edu	37	9	112172594	112172594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002829.3	-1	reviewed	p.G472D	0.973	139	0%	81	18.5%	9	88.8%	probably_damaging(0.998)	tolerated(0.38)	deleterious(0.492)	NULL
PTPN3	5774	genome.wustl.edu	37	9	112182879	112182879	+	Nonsense_Mutation	SNP	G	G	A	rs185821807	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002829.3	-1	reviewed	p.R380*	1.000	257	0%	110	22.7%	7	14.2%	-	-	-	NULL
PALM2	114299	genome.wustl.edu	37	9	112705401	112705401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053016.5	+1	validated	p.T313I	1.000	235	0%	65	20%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Paralemmin
PALM2-AKAP2	445815	genome.wustl.edu	37	9	112898915	112898915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007203.4	+1	validated	p.G364D	1.000	63	0%	40	20%	3	33.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
PALM2-AKAP2	445815	genome.wustl.edu	37	9	112899163	112899163	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007203.4	+1	validated	p.L447	1.000	128	0%	90	22.2%	3	0%	-	-	-	NULL
SVEP1	79987	genome.wustl.edu	37	9	113189931	113189931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153366.3	-1	validated	p.A1972V	0.999	184	0%	73	21.9%	0	-	probably_damaging(0.991)	tolerated(0.33)	neutral(0.468)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113196700	113196700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153366.3	-1	validated	p.D1659N	1.000	138	0%	76	19.7%	0	-	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113217961	113217961	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153366.3	-1	validated	p.I1232	0.051	146	0%	153	22.2%	0	-	-	-	-	HMMSmart_SM00179,PatternScan_EGF_CA,superfamily_EGF/Laminin
MUSK	4593	genome.wustl.edu	37	9	113538102	113538102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005592.3	+1	reviewed	p.A407T	1.000	89	0%	64	25%	0	-	benign(0.022)	deleterious(0.03)	neutral(0.365)	HMMPfam_Fz
LPAR1	1902	genome.wustl.edu	37	9	113704024	113704024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001401.3	-1	reviewed	p.T157I	1.000	231	0%	65	23.1%	14	50%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KIAA0368	23392	genome.wustl.edu	37	9	114124416	114124416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080398.1	-1	provisional	p.C1983Y	1.000	252	0%	117	22.2%	110	33.6%	benign(0.006)	tolerated(0.13)	neutral(0.253)	NULL
KIAA0368	23392	genome.wustl.edu	37	9	114138774	114138774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080398.1	-1	provisional	p.M1512I	1.000	322	0%	133	17.3%	38	42.1%	benign(0.258)	tolerated(0.53)	neutral(0.035)	superfamily_ARM repeat
ZNF483	158399	genome.wustl.edu	37	9	114304187	114304187	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133464.2	+1	validated	p.Y324*	0.871	148	0%	83	24.1%	0	-	-	-	-	NULL
PTGR1	22949	genome.wustl.edu	37	9	114325494	114325494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012212.3	-1	reviewed	p.K299N	0.918	695	0.3%	330	21.2%	26	84.6%	benign(0.004)	tolerated(0.13)	neutral(0.253)	superfamily_GroES_like
PTGR1	22949	genome.wustl.edu	37	9	114355217	114355217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012212.3	-1	reviewed	p.Q66H	0.103	175	0%	174	21.3%	38	94.7%	possibly_damaging(0.73)	tolerated(0.41)	neutral(0.282)	superfamily_GroES_like
SUSD1	64420	genome.wustl.edu	37	9	114860860	114860860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000374263	-1	known	p.P455L	0.003	322	0%	85	17.6%	3	66.6%	possibly_damaging(0.877)	deleterious(0)	deleterious(0.786)	NULL
KIAA1958	158405	genome.wustl.edu	37	9	115421998	115421998	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133465.2	+1	predicted	p.S600	0.990	133	0%	109	18.3%	2	0%	-	-	-	NULL
ZFP37	7539	genome.wustl.edu	37	9	115805995	115805995	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003408.1	-1	provisional	p.V301	0.981	497	0%	219	12.8%	3	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FKBP15	23307	genome.wustl.edu	37	9	115928408	115928408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015258.1	-1	validated	p.P1204S	1.000	339	0%	243	20.6%	61	34.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FKBP15	23307	genome.wustl.edu	37	9	115931594	115931594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015258.1	-1	validated	p.T1132I	0.009	176	0%	143	16.8%	40	30%	benign(0.147)	deleterious(0.01)	neutral(0.419)	NULL
PRPF4	9128	genome.wustl.edu	37	9	116038992	116038992	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004697.3	+1	provisional	p.I65	1.000	356	0%	196	25.5%	12	83.3%	-	-	-	NULL
C9orf43	257169	genome.wustl.edu	37	9	116190500	116190500	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152786.1	+1	predicted	p.K368	0.052	293	0%	142	17.6%	1	0%	-	-	-	NULL
ZNF618	114991	genome.wustl.edu	37	9	116770653	116770653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133374.2	+1	validated	p.R192W	1.000	181	0%	111	27.9%	10	20%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
ZNF618	114991	genome.wustl.edu	37	9	116811438	116811438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133374.2	+1	validated	p.C526Y	1.000	34	0%	21	19%	21	52.3%	probably_damaging(0.992)	tolerated(0.07)	deleterious(0.766)	NULL
AMBP	259	genome.wustl.edu	37	9	116838933	116838933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001633.3	-1	reviewed	p.V69M	0.991	152	0%	138	23.2%	7	42.8%	benign(0.021)	tolerated(0.21)	neutral(0.045)	HMMPfam_Lipocalin,superfamily_Calycin
KIF12	113220	genome.wustl.edu	37	9	116855707	116855707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138424.1	-1	provisional	p.A353T	0.003	96	0%	91	19.8%	164	47.5%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
COL27A1	85301	genome.wustl.edu	37	9	116925056	116925056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032888.2	+1	validated	p.A42T	0.997	606	0%	624	14.3%	2	100%	unknown(0)	tolerated(0.22)	-	NULL
COL27A1	85301	genome.wustl.edu	37	9	116930005	116930005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032888.2	+1	validated	p.T57M	0.212	33	0%	35	17.1%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00210
COL27A1	85301	genome.wustl.edu	37	9	117044584	117044584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032888.2	+1	validated	p.G1249C	1.000	157	0%	151	24.5%	7	57.1%	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
COL27A1	85301	genome.wustl.edu	37	9	117047007	117047007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032888.2	+1	validated	p.H1313Y	1.000	195	0%	208	25.5%	7	42.8%	unknown(0)	tolerated(0.47)	-	HMMPfam_Collagen
COL27A1	85301	genome.wustl.edu	37	9	117071715	117071715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032888.2	+1	validated	p.A1798V	1.000	57	0%	49	18.4%	12	50%	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	HMMPfam_COLFI,HMMSmart_SM00038
ORM1	5004	genome.wustl.edu	37	9	117087354	117087354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000607.2	+1	reviewed	p.E154D	0.646	166	0%	132	14.4%	0	-	benign(0.07)	deleterious(0)	neutral(0.450)	HMMPfam_Lipocalin,superfamily_Calycin
AKNA	80709	genome.wustl.edu	37	9	117099359	117099359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030767.4	-1	validated	p.S1432I	0.028	13	0%	26	30.8%	28	10.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
AKNA	80709	genome.wustl.edu	37	9	117129901	117129901	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030767.4	-1	validated	p.N550	0.001	24	0%	32	21.9%	13	7.6%	-	-	-	NULL
AKNA	80709	genome.wustl.edu	37	9	117130829	117130829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030767.4	-1	validated	p.T488M	0.000	189	0%	146	15.8%	17	0%	benign(0.142)	deleterious(0.01)	neutral(0.418)	NULL
DFNB31	25861	genome.wustl.edu	37	9	117187368	117187368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000374059	-1	known	p.S17Y	0.002	202	0%	102	23.5%	2	0%	benign(0.052)	deleterious(0)	neutral(0.448)	NULL
DFNB31	25861	genome.wustl.edu	37	9	117240929	117240929	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015404.3	-1	reviewed	p.P247	0.001	80	0%	48	14.6%	5	20%	-	-	-	NULL
TNC	3371	genome.wustl.edu	37	9	117825309	117825309	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002160.2	-1	validated	p.S1307T	0.995	97	0%	41	9.8%	8	0%	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
TNC	3371	genome.wustl.edu	37	9	117825361	117825361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002160.2	-1	validated	p.V1290I	1.000	143	0%	65	24.6%	6	33.3%	benign(0.002)	tolerated(0.65)	neutral(0.003)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
PAPPA	5069	genome.wustl.edu	37	9	118973953	118973953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002581.3	+1	reviewed	p.P554T	1.000	178	0%	39	15.4%	0	-	probably_damaging(1)	tolerated(0.68)	deleterious(0.502)	superfamily_SSF55486
PAPPA	5069	genome.wustl.edu	37	9	119109489	119109489	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002581.3	+1	reviewed	e15+1	1.000	150	0%	58	25.9%	0	-	-	-	-	-
ASTN2	23245	genome.wustl.edu	37	9	119202945	119202945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198187.3	-1	reviewed	p.S1242F	1.000	288	0%	171	24%	2	0%	possibly_damaging(0.922)	deleterious(0.02)	deleterious(0.754)	NULL
TRIM32	22954	genome.wustl.edu	37	9	119460168	119460168	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099679.1	+1	reviewed	p.E49	1.000	116	0%	99	24.2%	6	66.6%	-	-	-	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
ASTN2	23245	genome.wustl.edu	37	9	119625911	119625911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198187.3	-1	reviewed	p.R664H	0.954	201	0%	89	11.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_EGF/Laminin
ASTN2	23245	genome.wustl.edu	37	9	119770478	119770478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198187.3	-1	reviewed	p.A495D	1.000	212	0%	158	16.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC389787	389787	genome.wustl.edu	37	9	120845155	120845155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001725747.2	-1	model	p.T135M	1.000	85	0%	33	15.2%	0	-	-	-	-	HMMPfam_TCTP,superfamily_Mss4-like
DBC1	1620	genome.wustl.edu	37	9	122011301	122011301	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014618.2	-1	validated	p.Q116*	1.000	300	0%	149	16.8%	0	-	-	-	-	HMMSmart_SM00457
CDK5RAP2	55755	genome.wustl.edu	37	9	123201918	123201918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018249.4	-1	reviewed	p.K1161E	0.647	300	0%	92	26.1%	11	63.6%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123210353	123210353	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018249.4	-1	reviewed	p.G949*	0.400	283	0.7%	78	17.9%	8	0%	-	-	-	NULL
PSMD5	5711	genome.wustl.edu	37	9	123586940	123586940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005047.2	-1	reviewed	p.L280M	1.000	132	0%	83	18.1%	14	50%	possibly_damaging(0.938)	tolerated(0.23)	neutral(0.425)	superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB
CNTRL	11064	genome.wustl.edu	37	9	123870165	123870165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007018.4	+1	reviewed	p.E298D	1.000	93	0%	63	12.7%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
CNTRL	11064	genome.wustl.edu	37	9	123935622	123935622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007018.4	+1	reviewed	p.K2173N	1.000	188	0%	51	21.6%	10	0%	possibly_damaging(0.946)	deleterious(0.05)	deleterious(0.736)	superfamily_tRNA-binding arm
GSN	2934	genome.wustl.edu	37	9	124093786	124093786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000373807	+1	known	p.V478M	0.000	107	0%	92	19.6%	0	-	probably_damaging(0.983)	-	-	HMMSmart_GEL
DAB2IP	153090	genome.wustl.edu	37	9	124522492	124522492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032552.2	+1	validated	p.T287M	0.998	60	0%	38	13.2%	10	20%	probably_damaging(0.963)	tolerated(0.1)	deleterious(0.692)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TTLL11	158135	genome.wustl.edu	37	9	124585110	124585110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001139442.1	-1	validated	p.R720M	1.000	28	0%	24	20.8%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
OR1J4	26219	genome.wustl.edu	37	9	125281425	125281425	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004452.1	+1	provisional	p.K2N	0.000	267	0%	158	11.4%	0	-	benign(0.001)	tolerated(0.09)	neutral(0.296)	superfamily_Family A G protein-coupled receptor-like
OR1B1	347169	genome.wustl.edu	37	9	125391659	125391659	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004450.1	-1	provisional	p.S52	0.000	226	0%	71	22.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR1B1	347169	genome.wustl.edu	37	9	125391729	125391729	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004450.1	-1	provisional	p.L29H	0.362	236	0%	94	22.3%	0	-	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	superfamily_SSF81321
OR1L1	26737	genome.wustl.edu	37	9	125424780	125424780	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005236.3	+1	validated	p.P312	0.041	300	0%	118	16.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR1L3	26735	genome.wustl.edu	37	9	125437493	125437493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005234.1	+1	provisional	p.A29T	0.265	260	0%	110	18.2%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	superfamily_Family A G protein-coupled receptor-like
OR1L6	392390	genome.wustl.edu	37	9	125512030	125512030	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004453.2	+1	validated	p.F4L	0.000	282	0%	163	25.2%	0	-	benign(0.009)	tolerated(0.27)	neutral(0.034)	NULL
OR1L6	392390	genome.wustl.edu	37	9	125512206	125512206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004453.2	+1	validated	p.P63H	0.088	732	0.1%	345	22%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	superfamily_SSF81321
OR1K1	392392	genome.wustl.edu	37	9	125562739	125562739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080859.1	+1	provisional	p.S113N	0.008	113	0%	66	19.7%	1	0%	possibly_damaging(0.678)	tolerated(0.78)	neutral(0.242)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PDCL	5082	genome.wustl.edu	37	9	125582648	125582648	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005388.3	-1	reviewed	p.E208*	0.990	171	0%	105	27.6%	24	25%	-	-	-	HMMPfam_Phosducin,superfamily_Thioredoxin-like
ZBTB6	10773	genome.wustl.edu	37	9	125673604	125673604	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006626.4	-1	provisional	p.E250*	1.000	282	0%	243	29.2%	2	50%	-	-	-	NULL
ZBTB26	57684	genome.wustl.edu	37	9	125681212	125681212	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020924.2	-1	provisional	p.T334	1.000	110	0%	73	23.3%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RABGAP1	23637	genome.wustl.edu	37	9	125746935	125746935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012197.3	+1	validated	p.P108T	1.000	208	0%	53	17%	6	100%	possibly_damaging(0.842)	deleterious(0)	deleterious(0.766)	NULL
GPR21	2844	genome.wustl.edu	37	9	125797612	125797612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005294.1	+1	provisional	p.R256Q	1.000	143	0%	58	25.9%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CRB2	286204	genome.wustl.edu	37	9	126133184	126133184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173689.5	+1	validated	p.G618W	1.000	94	0%	101	19.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases
DENND1A	57706	genome.wustl.edu	37	9	126146038	126146038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020946.1	-1	validated	p.L578M	1.000	47	0%	59	22%	7	57.1%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
GPR144	347088	genome.wustl.edu	37	9	127230869	127230869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000334810	+1	known	p.E742D	1.000	139	0%	138	16.7%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_7tm_2
NR5A1	2516	genome.wustl.edu	37	9	127262767	127262767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004959.4	-1	reviewed	p.A158T	0.153	18	0%	16	43.8%	0	-	possibly_damaging(0.753)	tolerated(0.76)	neutral(0.278)	superfamily_Nuclear receptor ligand-binding domain
WDR38	401551	genome.wustl.edu	37	9	127618189	127618189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001045476.1	+1	provisional	p.Q119H	0.680	186	0%	224	15.6%	5	20%	possibly_damaging(0.91)	tolerated(0.56)	neutral(0.369)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
WDR38	401551	genome.wustl.edu	37	9	127618586	127618586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001045476.1	+1	provisional	p.T158M	0.020	49	0%	88	22.7%	2	0%	possibly_damaging(0.742)	deleterious(0)	deleterious(0.717)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
SCAI	286205	genome.wustl.edu	37	9	127781108	127781108	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173690.4	-1	reviewed	p.D300	1.000	192	0%	126	22.2%	1	0%	-	-	-	NULL
PPP6C	5537	genome.wustl.edu	37	9	127912158	127912158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001123355.1	-1	reviewed	p.Q275K	1.000	407	0.2%	328	22.3%	84	39.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Metallophos,HMMSmart_PP2Ac,superfamily_SSF56300
RABEPK	10244	genome.wustl.edu	37	9	127969873	127969873	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005833.3	+1	validated	p.P28	1.000	206	0%	150	22%	62	43.5%	-	-	-	superfamily_Galactose oxidase central domain
GAPVD1	26130	genome.wustl.edu	37	9	128083795	128083795	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000431329	+1	known	p.P425L	1.000	376	0%	318	22.6%	4	25%	-	-	-	NULL
GAPVD1	26130	genome.wustl.edu	37	9	128116984	128116984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015635.2	+1	validated	p.Q1234H	1.000	218	0%	76	22.4%	21	33.3%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	NULL
GAPVD1	26130	genome.wustl.edu	37	9	128118025	128118025	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000438537	+1	known	p.R13*	1.000	132	0%	47	17%	16	31.2%	-	-	-	NULL
PBX3	5090	genome.wustl.edu	37	9	128677963	128677963	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006195.5	+1	validated	e3-2	1.000	83	0%	48	31.2%	0	-	-	-	-	-
PBX3	5090	genome.wustl.edu	37	9	128697815	128697815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006195.5	+1	validated	p.L258I	1.000	314	0%	147	19%	6	0%	benign(0.312)	tolerated(0.19)	neutral(0.147)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
LMX1B	4010	genome.wustl.edu	37	9	129376791	129376791	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000373474	+1	known	p.C21	0.995	16	0%	12	33.3%	0	-	-	-	-	NULL
LMX1B	4010	genome.wustl.edu	37	9	129377800	129377800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002316.3	+1	reviewed	p.S70N	1.000	70	0%	89	20.2%	1	100%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LMX1B	4010	genome.wustl.edu	37	9	129453251	129453251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002316.3	+1	reviewed	p.E132K	1.000	46	0%	46	39.1%	0	-	possibly_damaging(0.804)	tolerated(0.09)	deleterious(0.599)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LMX1B	4010	genome.wustl.edu	37	9	129458715	129458715	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002316.3	+1	reviewed	p.S368	1.000	56	0%	74	20.3%	0	-	-	-	-	NULL
ZBTB34	403341	genome.wustl.edu	37	9	129642168	129642168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099270.1	+1	validated	p.P160S	1.000	80	0%	46	26.1%	0	-	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	NULL
ZBTB34	403341	genome.wustl.edu	37	9	129642338	129642338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099270.1	+1	validated	p.E216D	1.000	325	0.3%	101	29.7%	1	0%	probably_damaging(0.973)	tolerated(0.22)	neutral(0.457)	NULL
ZBTB34	403341	genome.wustl.edu	37	9	129642907	129642907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099270.1	+1	validated	p.G406V	1.000	242	0%	90	16.7%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RALGPS1	9649	genome.wustl.edu	37	9	129831610	129831610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014636.1	+1	provisional	p.K195N	1.000	378	0%	140	17.9%	3	100%	possibly_damaging(0.804)	tolerated(0.15)	deleterious(0.543)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
GARNL3	84253	genome.wustl.edu	37	9	130152985	130152985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032293.4	+1	validated	p.R937W	0.973	163	0%	129	20.2%	1	0%	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	NULL
ZNF79	7633	genome.wustl.edu	37	9	130206323	130206323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007135.2	+1	validated	p.S115Y	0.000	103	0%	67	34.3%	3	66.6%	possibly_damaging(0.922)	deleterious(0.04)	deleterious(0.720)	NULL
FAM129B	64855	genome.wustl.edu	37	9	130270806	130270806	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022833.2	-1	validated	p.N443	0.516	80	0%	92	14.1%	180	25.5%	-	-	-	NULL
FAM129B	64855	genome.wustl.edu	37	9	130279436	130279436	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022833.2	-1	validated	p.P255	0.293	35	0%	36	44.4%	116	33.6%	-	-	-	NULL
STXBP1	6812	genome.wustl.edu	37	9	130435537	130435537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003165.3	+1	reviewed	p.E369D	0.615	243	0.4%	124	21.8%	7	28.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
TTC16	158248	genome.wustl.edu	37	9	130491891	130491891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144965.1	+1	provisional	p.V599A	0.000	190	0%	170	17.6%	0	-	benign(0.253)	tolerated(0.36)	neutral(0.046)	NULL
ENG	2022	genome.wustl.edu	37	9	130578223	130578223	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114753.1	-1	reviewed	p.T617	0.999	29	0%	38	31.6%	104	9.6%	-	-	-	NULL
ENG	2022	genome.wustl.edu	37	9	130578279	130578279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114753.1	-1	reviewed	p.A599T	1.000	34	0%	57	14%	168	11.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PIP5KL1	138429	genome.wustl.edu	37	9	130687415	130687415	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135219.1	-1	validated	p.P296	0.007	87	0%	119	22.7%	4	0%	-	-	-	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
PIP5KL1	138429	genome.wustl.edu	37	9	130692024	130692024	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135219.1	-1	validated	p.C57	0.895	72	0%	64	28.1%	0	-	-	-	-	superfamily_SAICAR synthase-like
FAM102A	399665	genome.wustl.edu	37	9	130706948	130706948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001035254.2	-1	validated	p.L352P	1.000	27	0%	27	14.8%	27	7.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NAIF1	203245	genome.wustl.edu	37	9	130829154	130829154	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_197956.3	-1	validated	p.K76M	1.000	23	0%	16	25%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC25A25	114789	genome.wustl.edu	37	9	130868109	130868109	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001006641.1	+1	validated	p.N283	0.143	74	0%	80	13.8%	5	20%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
CIZ1	25792	genome.wustl.edu	37	9	130931723	130931723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001131016.1	-1	validated	p.H703Y	1.000	486	0%	391	12%	125	18.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_ZnF_U1,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
DNM1	1759	genome.wustl.edu	37	9	130982568	130982568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004408.2	+1	reviewed	p.R266H	1.000	165	0%	161	13.7%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Dynamin_M,superfamily_P-loop containing nucleoside triphosphate hydrolases
GOLGA2	2801	genome.wustl.edu	37	9	131020167	131020167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004486.4	-1	reviewed	p.R811H	0.728	234	0%	249	23.7%	30	46.6%	benign(0.15)	deleterious(0.01)	neutral(0.419)	NULL
SLC27A4	10999	genome.wustl.edu	37	9	131107689	131107689	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005094.3	+1	reviewed	p.F139	0.591	29	0%	62	17.7%	14	14.2%	-	-	-	HMMPfam_AMP-binding,PatternScan_LIPOCALIN,superfamily_Acetyl-CoA synthetase-like
CERCAM	51148	genome.wustl.edu	37	9	131191047	131191047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016174.4	+1	validated	p.R300C	1.000	56	0%	39	17.9%	14	57.1%	possibly_damaging(0.444)	deleterious(0.01)	deleterious(0.550)	NULL
CERCAM	51148	genome.wustl.edu	37	9	131198061	131198061	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016174.4	+1	validated	p.W555*	1.000	18	0%	17	41.2%	29	3.4%	-	-	-	NULL
ODF2	4957	genome.wustl.edu	37	9	131222848	131222848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002540.3	+1	reviewed	p.R4H	1.000	408	0%	319	22.6%	25	48%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ODF2	4957	genome.wustl.edu	37	9	131223220	131223220	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002540.3	+1	reviewed	e2-1	1.000	259	0%	242	24.4%	0	-	-	-	-	-
ODF2	4957	genome.wustl.edu	37	9	131247129	131247129	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002540.3	+1	reviewed	p.E394	0.958	215	0%	106	26.4%	28	42.8%	-	-	-	NULL
ODF2	4957	genome.wustl.edu	37	9	131262353	131262353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002540.3	+1	reviewed	p.R746H	1.000	115	0%	133	25.6%	58	25.8%	possibly_damaging(0.704)	deleterious(0.01)	deleterious(0.659)	NULL
SPTAN1	6709	genome.wustl.edu	37	9	131345429	131345429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130438.1	+1	validated	p.R627Q	1.000	265	0%	94	25.5%	14	21.4%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTAN1	6709	genome.wustl.edu	37	9	131389750	131389750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130438.1	+1	validated	p.A2221V	1.000	13	0%	16	37.5%	119	25.2%	benign(0.258)	tolerated(0.11)	neutral(0.299)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
WDR34	89891	genome.wustl.edu	37	9	131398650	131398650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052844.3	-1	validated	p.L205M	0.986	62	0%	27	22.2%	249	48.5%	possibly_damaging(0.929)	tolerated(0.1)	deleterious(0.662)	superfamily_WD40_like
WDR34	89891	genome.wustl.edu	37	9	131398669	131398669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052844.3	-1	validated	p.W198C	1.000	71	0%	36	16.7%	256	48.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
CCBL1	883	genome.wustl.edu	37	9	131600355	131600355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122671.1	-1	reviewed	p.R138H	0.018	270	0%	201	19.4%	7	71.4%	benign(0.002)	tolerated(0.16)	neutral(0.059)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
PHYHD1	254295	genome.wustl.edu	37	9	131696317	131696317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174933.3	+1	validated	p.S99F	0.998	284	0.4%	220	10.9%	12	0%	benign(0.339)	deleterious(0)	deleterious(0.551)	HMMPfam_PhyH
NUP188	23511	genome.wustl.edu	37	9	131741549	131741549	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015354.1	+1	validated	p.I404	0.740	292	0%	148	22.3%	15	53.3%	-	-	-	HMMPfam_Nup188
SH3GLB2	56904	genome.wustl.edu	37	9	131772137	131772137	+	Missense_Mutation	SNP	C	C	T	rs112735794		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020145.2	-1	provisional	p.R251H	1.000	62	0%	82	25.6%	97	21.6%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_BAR,HMMSmart_SM00721
SH3GLB2	56904	genome.wustl.edu	37	9	131772973	131772973	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020145.2	-1	provisional	e7-1	1.000	152	0%	119	27.7%	9	33.3%	-	-	-	-
CRAT	1384	genome.wustl.edu	37	9	131857884	131857884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000755.3	-1	reviewed	p.A558V	1.000	32	0%	44	18.2%	53	47.1%	possibly_damaging(0.437)	tolerated(0.18)	neutral(0.198)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
METTL11A	28989	genome.wustl.edu	37	9	132395013	132395013	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014064.2	+1	validated	p.Q11*	0.979	264	0%	246	15.9%	117	47.8%	-	-	-	HMMPfam_DUF858
METTL11A	28989	genome.wustl.edu	37	9	132397544	132397544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014064.2	+1	validated	p.R158H	1.000	30	3.3%	37	18.9%	225	52%	unknown(0)	-	-	HMMPfam_DUF858,superfamily_SSF53335
METTL11A	28989	genome.wustl.edu	37	9	132397561	132397561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014064.2	+1	validated	p.V164I	0.983	39	0%	51	9.8%	233	33.4%	benign(0.006)	tolerated(0.36)	neutral(0.020)	HMMPfam_DUF858,superfamily_SSF53335
C9orf78	51759	genome.wustl.edu	37	9	132591484	132591484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016520.2	-1	validated	p.R260W	0.974	193	0%	266	16.2%	84	20.2%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
FUBP3	8939	genome.wustl.edu	37	9	133506950	133506950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003934.1	+1	validated	p.N429D	0.580	139	0%	157	21%	37	51.3%	benign(0)	tolerated(0.24)	neutral(0.037)	superfamily_Eukaryotic type KH-domain (KH-domain type I)
QRFP	347148	genome.wustl.edu	37	9	133768931	133768931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198180.1	-1	validated	p.G99S	0.000	31	0%	27	37%	1	0%	benign(0.004)	tolerated(0.22)	neutral(0.042)	NULL
FIBCD1	84929	genome.wustl.edu	37	9	133780651	133780651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145106.1	-1	validated	p.L366F	0.993	55	0%	78	15.4%	0	-	possibly_damaging(0.732)	deleterious(0)	deleterious(0.712)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
PRRC2B	84726	genome.wustl.edu	37	9	134308162	134308162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013318.3	+1	validated	p.D92N	1.000	465	0%	272	18%	9	55.5%	probably_damaging(0.986)	deleterious(0.04)	deleterious(0.783)	HMMPfam_BAT2_N
PRRC2B	84726	genome.wustl.edu	37	9	134351347	134351347	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000451855	+1	known	p.G11R	0.998	72	0%	79	24.1%	10	30%	-	-	-	NULL
PRRC2B	84726	genome.wustl.edu	37	9	134363327	134363327	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000320547	+1	known	p.G30S	0.691	81	0%	74	13.5%	50	12%	-	-	-	NULL
UCK1	83549	genome.wustl.edu	37	9	134404648	134404648	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031432.2	-1	validated	p.E125	1.000	48	0%	86	27.9%	48	45.8%	-	-	-	HMMPfam_PRK,superfamily_SSF52540
RAPGEF1	2889	genome.wustl.edu	37	9	134465325	134465325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198679.1	-1	reviewed	p.R771C	1.000	201	0%	158	12.7%	16	6.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RasGEF_N,HMMSmart_RasGEFN,superfamily_Ras_GEF
RAPGEF1	2889	genome.wustl.edu	37	9	134514062	134514062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198679.1	-1	reviewed	p.T205N	0.395	254	0%	132	25%	21	33.3%	possibly_damaging(0.741)	tolerated(0.29)	neutral(0.301)	NULL
MED27	9442	genome.wustl.edu	37	9	134814829	134814829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004269.2	-1	reviewed	p.R171K	1.000	354	0%	119	20.2%	21	23.8%	probably_damaging(0.987)	tolerated(0.07)	deleterious(0.756)	NULL
SETX	23064	genome.wustl.edu	37	9	135173510	135173510	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015046.5	-1	reviewed	p.D1913V	1.000	346	0%	155	20%	12	50%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
SETX	23064	genome.wustl.edu	37	9	135203494	135203494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015046.5	-1	reviewed	p.R1164Q	0.040	186	0.5%	111	20.7%	0	-	benign(0.015)	deleterious(0)	neutral(0.445)	NULL
SETX	23064	genome.wustl.edu	37	9	135203908	135203908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015046.5	-1	reviewed	p.R1026I	0.000	406	0.2%	151	28.5%	2	0%	benign(0.163)	tolerated(0.06)	neutral(0.337)	NULL
SETX	23064	genome.wustl.edu	37	9	135204607	135204607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015046.5	-1	reviewed	p.H793R	0.907	336	0%	164	18.9%	1	0%	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
BARHL1	56751	genome.wustl.edu	37	9	135458442	135458442	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020064.3	+1	validated	p.P86	0.989	27	0%	25	24%	0	-	-	-	-	NULL
BARHL1	56751	genome.wustl.edu	37	9	135458627	135458627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020064.3	+1	validated	p.A148V	0.994	32	0%	36	13.9%	0	-	benign(0.007)	tolerated(0.08)	neutral(0.300)	NULL
DDX31	64794	genome.wustl.edu	37	9	135470283	135470283	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022779.7	-1	reviewed	p.Q842	0.001	191	0%	251	23.5%	12	41.6%	-	-	-	NULL
DDX31	64794	genome.wustl.edu	37	9	135487510	135487510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022779.7	-1	reviewed	p.A758D	0.009	274	0%	120	24.2%	22	36.3%	possibly_damaging(0.861)	tolerated(0.28)	neutral(0.365)	NULL
GTF3C4	9329	genome.wustl.edu	37	9	135554297	135554297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012204.2	+1	validated	p.A431T	0.996	208	0%	155	18.1%	5	20%	possibly_damaging(0.882)	tolerated(0.29)	neutral(0.373)	NULL
C9orf9	11092	genome.wustl.edu	37	9	135759354	135759354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018956.3	+1	provisional	p.S7F	0.007	144	0%	92	23.9%	19	57.8%	benign(0.002)	deleterious(0.03)	neutral(0.364)	NULL
TSC1	7248	genome.wustl.edu	37	9	135798749	135798749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000368.4	-1	reviewed	p.C165Y	1.000	297	0%	130	25.4%	2	100%	probably_damaging(0.986)	tolerated(0.55)	neutral(0.442)	HMMPfam_Hamartin
CEL	1056	genome.wustl.edu	37	9	135946543	135946543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001807.3	+1	reviewed	p.V555M	0.288	56	0%	80	16.3%	0	-	possibly_damaging(0.713)	tolerated(0.1)	deleterious(0.544)	superfamily_alpha/beta-Hydrolases
CEL	1056	genome.wustl.edu	37	9	135947032	135947032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001807.3	+1	reviewed	p.P718S	0.024	10	0%	17	29.4%	0	-	possibly_damaging(0.894)	deleterious(0)	deleterious(0.796)	NULL
RALGDS	5900	genome.wustl.edu	37	9	135979661	135979661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006266.2	-1	validated	p.P554S	0.719	197	0%	239	20.5%	35	31.4%	benign(0.221)	tolerated(0.19)	neutral(0.072)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
GBGT1	26301	genome.wustl.edu	37	9	136029216	136029216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000372043	-1	known	p.S258Y	0.967	99	0%	93	25.8%	1	0%	unknown(0)	-	-	HMMPfam_Glyco_transf_6
LCN1P1	286310	genome.wustl.edu	37	9	136102216	136102216	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_017747.3	-1	model	NULL	0.002	49	0%	76	18.4%	0	-	-	-	-	-
SURF6	6838	genome.wustl.edu	37	9	136201359	136201359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006753.4	-1	reviewed	p.R58Q	0.000	322	0%	513	20.7%	23	43.4%	benign(0.002)	tolerated(0.92)	-	NULL
C9orf96	169436	genome.wustl.edu	37	9	136249639	136249639	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153710.3	+1	validated	e3-1	1.000	388	0%	370	13.5%	2	0%	-	-	-	-
C9orf96	169436	genome.wustl.edu	37	9	136265601	136265601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153710.3	+1	validated	p.R381M	0.001	90	1.1%	112	12.5%	0	-	unknown(0)	-	-	superfamily_ARM repeat
C9orf96	169436	genome.wustl.edu	37	9	136270545	136270545	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153710.3	+1	validated	p.*681Y	0.000	55	0%	44	25%	0	-	-	-	-	NULL
REXO4	57109	genome.wustl.edu	37	9	136279820	136279820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000371935	-1	known	p.G120E	1.000	369	0.3%	404	24%	41	48.7%	unknown(0)	deleterious(0.02)	-	NULL
REXO4	57109	genome.wustl.edu	37	9	136282813	136282813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020385.2	-1	validated	p.S51I	0.000	248	0%	333	24.6%	13	38.4%	benign(0.184)	tolerated(0.14)	neutral(0.267)	NULL
ADAMTS13	11093	genome.wustl.edu	37	9	136305568	136305568	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139025.3	+1	reviewed	p.V630	0.594	50	0%	62	21%	5	20%	-	-	-	NULL
CACFD1	11094	genome.wustl.edu	37	9	136325263	136325263	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017586.2	+1	validated	p.W25*	1.000	64	0%	24	16.7%	7	14.2%	-	-	-	HMMPfam_Cg6151-P
SARDH	1757	genome.wustl.edu	37	9	136531968	136531968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134707.1	-1	reviewed	p.E840D	1.000	97	0%	73	20.5%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GCV_T_C,superfamily_SSF101790
SARDH	1757	genome.wustl.edu	37	9	136577769	136577769	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134707.1	-1	reviewed	p.E434*	1.000	50	0%	55	16.4%	1	0%	-	-	-	superfamily_SSF51905
BRD3	8019	genome.wustl.edu	37	9	136910508	136910508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007371.3	-1	reviewed	p.Q374H	1.000	124	0%	92	18.5%	18	44.4%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
BRD3	8019	genome.wustl.edu	37	9	136913283	136913283	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007371.3	-1	reviewed	p.K336	1.000	66	0%	61	18%	25	44%	-	-	-	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
BRD3	8019	genome.wustl.edu	37	9	136913406	136913406	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007371.3	-1	reviewed	p.D295	0.972	76	1.3%	56	32.1%	11	54.5%	-	-	-	superfamily_Bromodomain
RXRA	6256	genome.wustl.edu	37	9	137325971	137325971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002957.4	+1	reviewed	p.A387S	0.641	78	0%	60	16.7%	46	45.6%	benign(0)	tolerated(0.98)	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
COL5A1	1289	genome.wustl.edu	37	9	137582769	137582769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000093.3	+1	reviewed	p.D41Y	1.000	134	0%	91	28.6%	3	0%	unknown(0)	deleterious(0)	-	HMMSmart_TSPN
COL5A1	1289	genome.wustl.edu	37	9	137622081	137622081	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000093.3	+1	reviewed	e7-1	0.998	47	0%	47	21.3%	0	-	-	-	-	-
COL5A1	1289	genome.wustl.edu	37	9	137630649	137630649	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000093.3	+1	reviewed	p.E497*	1.000	139	0%	147	21.8%	4	0%	-	-	-	HMMPfam_Collagen
COL5A1	1289	genome.wustl.edu	37	9	137687142	137687142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000093.3	+1	reviewed	p.T927I	1.000	122	0%	171	27.5%	9	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Collagen
FCN2	2220	genome.wustl.edu	37	9	137772710	137772710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004108.2	+1	reviewed	p.L15M	0.002	76	0%	60	28.3%	0	-	benign(0.019)	tolerated(0.08)	neutral(0.301)	NULL
FCN2	2220	genome.wustl.edu	37	9	137777091	137777091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004108.2	+1	reviewed	p.R103H	0.005	75	0%	72	19.4%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FCN2	2220	genome.wustl.edu	37	9	137777172	137777172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004108.2	+1	reviewed	p.T130N	0.004	60	0%	66	18.2%	1	0%	possibly_damaging(0.93)	tolerated(0.5)	neutral(0.387)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FCN1	2219	genome.wustl.edu	37	9	137804989	137804989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002003.3	-1	reviewed	p.G114D	0.209	74	0%	59	18.6%	6	0%	possibly_damaging(0.921)	deleterious(0.03)	deleterious(0.736)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
OLFM1	10439	genome.wustl.edu	37	9	138011410	138011410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014279.4	+1	validated	p.D264N	1.000	185	0%	117	23.1%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_OLF,HMMSmart_OLF
PPP1R26	9858	genome.wustl.edu	37	9	138377451	138377451	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014811.3	+1	validated	p.D365	0.910	35	0%	30	30%	14	35.7%	-	-	-	NULL
PPP1R26	9858	genome.wustl.edu	37	9	138378672	138378672	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014811.3	+1	validated	p.V772	0.000	24	0%	20	20%	23	43.4%	-	-	-	NULL
MRPS2	51116	genome.wustl.edu	37	9	138395784	138395784	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016034.3	+1	reviewed	p.I232	1.000	86	0%	105	19%	156	42.9%	-	-	-	HMMPfam_Ribosomal_S2,superfamily_Ribosomal_S2
KCNT1	57582	genome.wustl.edu	37	9	138657519	138657519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020822.2	+1	validated	p.R417H	1.000	40	0%	58	17.2%	0	-	possibly_damaging(0.921)	tolerated(0.07)	deleterious(0.690)	NULL
KCNT1	57582	genome.wustl.edu	37	9	138662716	138662716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020822.2	+1	validated	p.L595I	1.000	46	0%	54	25.9%	0	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	HMMPfam_BK_channel_a,superfamily_NAD(P)-bd
KCNT1	57582	genome.wustl.edu	37	9	138675962	138675962	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020822.2	+1	validated	p.L978	1.000	61	0%	62	14.5%	0	-	-	-	-	NULL
CAMSAP1	157922	genome.wustl.edu	37	9	138709867	138709867	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015447.3	-1	validated	p.T1409	0.114	27	0%	31	22.6%	16	68.7%	-	-	-	NULL
CAMSAP1	157922	genome.wustl.edu	37	9	138713830	138713830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015447.3	-1	validated	p.E893K	1.000	27	3.7%	35	20%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CAMSAP1	157922	genome.wustl.edu	37	9	138714520	138714520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015447.3	-1	validated	p.D663N	0.001	123	0%	120	18.3%	8	62.5%	benign(0.273)	tolerated(0.08)	neutral(0.329)	NULL
CAMSAP1	157922	genome.wustl.edu	37	9	138714914	138714914	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015447.3	-1	validated	p.S531	1.000	467	0%	414	22.7%	2	100%	-	-	-	NULL
UBAC1	10422	genome.wustl.edu	37	9	138830126	138830126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016172.2	-1	validated	p.Q348H	0.998	147	0%	152	13.8%	114	20.1%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
LHX3	8022	genome.wustl.edu	37	9	139091536	139091536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014564.2	-1	reviewed	p.A153T	0.997	19	0%	35	31.4%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_LIM,superfamily_Homeodomain-like
LHX3	8022	genome.wustl.edu	37	9	139092439	139092439	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014564.2	-1	reviewed	p.D85	0.939	54	0%	73	16.4%	0	-	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
QSOX2	169714	genome.wustl.edu	37	9	139110587	139110587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181701.3	-1	validated	p.H342Y	0.997	62	0%	67	29.9%	14	28.5%	probably_damaging(0.994)	tolerated(0.39)	neutral(0.468)	NULL
SNAPC4	6621	genome.wustl.edu	37	9	139275262	139275262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003086.2	-1	validated	p.R810Q	0.518	25	0%	36	13.9%	5	40%	possibly_damaging(0.914)	tolerated(0.2)	neutral(0.415)	NULL
SNAPC4	6621	genome.wustl.edu	37	9	139276733	139276733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003086.2	-1	validated	p.A680V	0.001	26	0%	46	19.6%	3	100%	benign(0.032)	deleterious(0.01)	neutral(0.407)	NULL
SNAPC4	6621	genome.wustl.edu	37	9	139290216	139290216	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003086.2	-1	validated	p.E62*	0.751	102	0%	124	21%	4	25%	-	-	-	NULL
SDCCAG3	10807	genome.wustl.edu	37	9	139301683	139301683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039707.1	-1	validated	p.A245T	0.001	58	0%	78	24.4%	41	43.9%	benign(0.001)	tolerated(0.28)	neutral(0.032)	NULL
SDCCAG3	10807	genome.wustl.edu	37	9	139304577	139304577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039707.1	-1	validated	p.V62A	1.000	47	0%	53	15.1%	8	62.5%	possibly_damaging(0.574)	-	-	NULL
SEC16A	9919	genome.wustl.edu	37	9	139360538	139360538	+	Silent	SNP	C	C	T	rs185542947	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000433860	-1	known	p.A90T	0.002	38	0%	60	20%	11	72.7%	-	-	-	NULL
NOTCH1	4851	genome.wustl.edu	37	9	139391124	139391124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017617.3	-1	reviewed	p.A2356V	0.117	68	0%	61	18%	21	23.8%	benign(0.022)	tolerated(0.11)	neutral(0.273)	NULL
NOTCH1	4851	genome.wustl.edu	37	9	139401758	139401758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017617.3	-1	reviewed	p.Q1214H	1.000	29	0%	38	26.3%	5	20%	probably_damaging(0.999)	tolerated(0.48)	deleterious(0.501)	HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_1,superfamily_SSF57196
NOTCH1	4851	genome.wustl.edu	37	9	139407897	139407897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017617.3	-1	reviewed	p.T767I	1.000	94	0%	119	21%	10	10%	possibly_damaging(0.736)	tolerated(0.09)	deleterious(0.566)	HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_CA,superfamily_SSF57196
NOTCH1	4851	genome.wustl.edu	37	9	139410110	139410110	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017617.3	-1	reviewed	p.H576	1.000	62	0%	46	26.1%	6	33.3%	-	-	-	HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_CA,superfamily_SSF57196
NOTCH1	4851	genome.wustl.edu	37	9	139417387	139417387	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017617.3	-1	reviewed	p.Y219	0.567	15	0.000	9	0.444	0	-	-	-	-	superfamily_SSF57196
NOTCH1	4851	genome.wustl.edu	37	9	139438554	139438554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017617.3	-1	reviewed	p.G21V	0.995	39	0%	35	17.1%	0	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	NULL
AGPAT2	10555	genome.wustl.edu	37	9	139571488	139571488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006412.3	-1	reviewed	p.F139L	1.000	60	0%	58	24.1%	164	38.4%	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase
FAM69B	138311	genome.wustl.edu	37	9	139616614	139616614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152421.3	+1	validated	p.I115T	1.000	80	0%	77	28.6%	37	16.2%	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	NULL
TMEM141	85014	genome.wustl.edu	37	9	139686453	139686453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032928.3	+1	validated	p.P59H	0.850	140	0%	159	25.2%	125	40.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LOC100131193	100131193	genome.wustl.edu	37	9	139699092	139699092	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_024580.1	-1	predicted	NULL	0.000	82	0%	66	21.2%	1	0%	-	-	-	-
LOC100131193	100131193	genome.wustl.edu	37	9	139699691	139699691	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_024580.1	-1	predicted	NULL	0.001	26	0%	24	16.7%	1	0%	-	-	-	-
KIAA1984	84960	genome.wustl.edu	37	9	139701256	139701256	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039374.4	+1	validated	p.A442	0.006	37	0%	70	17.1%	3	33.3%	-	-	-	NULL
MAMDC4	158056	genome.wustl.edu	37	9	139750252	139750252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206920.2	+1	validated	p.R514W	0.020	19	0%	24	50%	0	-	possibly_damaging(0.825)	tolerated(0.11)	deleterious(0.584)	HMMPfam_MAM
MAMDC4	158056	genome.wustl.edu	37	9	139754400	139754400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206920.2	+1	validated	p.L1086F	0.876	92	0%	152	22.4%	4	25%	benign(0.002)	tolerated(0.48)	neutral(0.011)	NULL
TRAF2	7186	genome.wustl.edu	37	9	139818384	139818384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021138.3	+1	reviewed	p.L407M	1.000	98	0%	85	30.6%	48	45.8%	benign(0.045)	deleterious(0.01)	neutral(0.408)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
C8G	733	genome.wustl.edu	37	9	139840170	139840170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000606.2	+1	validated	p.L75M	0.000	35	0%	44	11.4%	5	40%	benign(0.177)	tolerated(0.16)	neutral(0.076)	HMMPfam_Lipocalin,superfamily_Calycin
CLIC3	9022	genome.wustl.edu	37	9	139889673	139889673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004669.2	-1	reviewed	p.A114V	0.914	66	0%	54	18.5%	30	16.6%	benign(0.093)	deleterious(0.03)	neutral(0.371)	superfamily_GST_C_like
ABCA2	20	genome.wustl.edu	37	9	139907938	139907938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_212533.2	-1	reviewed	p.A1539T	1.000	78	0%	63	30.2%	11	45.4%	benign(0.078)	tolerated(0.26)	neutral(0.040)	NULL
ABCA2	20	genome.wustl.edu	37	9	139910828	139910828	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000479446	-1	known	p.W356*	1.000	131	0%	165	21.2%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA2	20	genome.wustl.edu	37	9	139916884	139916884	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_212533.2	-1	reviewed	p.L192	0.032	42	0%	45	15.6%	3	0%	-	-	-	NULL
ABCA2	20	genome.wustl.edu	37	9	139917188	139917188	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_212533.2	-1	reviewed	p.P165	0.000	25	0%	25	24%	4	25%	-	-	-	NULL
GRIN1	2902	genome.wustl.edu	37	9	140059747	140059747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007327.3	+1	reviewed	p.T900M	1.000	64	0%	62	24.2%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
ANAPC2	29882	genome.wustl.edu	37	9	140076277	140076277	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013366.3	-1	reviewed	p.L442	1.000	23	0%	45	15.6%	31	38.7%	-	-	-	HMMPfam_Cullin
ANAPC2	29882	genome.wustl.edu	37	9	140077668	140077668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013366.3	-1	reviewed	p.L399I	1.000	45	0%	56	14.3%	53	41.5%	benign(0.043)	tolerated(0.11)	neutral(0.274)	HMMPfam_Cullin
ANAPC2	29882	genome.wustl.edu	37	9	140079394	140079394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013366.3	-1	reviewed	p.R340H	1.000	47	0%	53	22.6%	36	36.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Cullin
ANAPC2	29882	genome.wustl.edu	37	9	140082279	140082279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013366.3	-1	reviewed	p.L132M	0.997	138	0%	163	22.7%	22	50%	possibly_damaging(0.544)	tolerated(0.19)	neutral(0.234)	NULL
TPRN	286262	genome.wustl.edu	37	9	140093552	140093552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173691.3	-1	validated	p.L477M	0.015	82	0%	111	29.7%	51	49%	possibly_damaging(0.928)	tolerated(0.16)	neutral(0.435)	NULL
NDOR1	27158	genome.wustl.edu	37	9	140108704	140108704	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144026.1	+1	reviewed	p.T187	0.000	108	0%	139	18%	5	40%	-	-	-	NULL
NDOR1	27158	genome.wustl.edu	37	9	140108829	140108829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144026.1	+1	reviewed	p.R229Q	0.997	218	0.5%	247	23.1%	14	57.1%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_FAD_binding_1,superfamily_Riboflavin_synthase_like_b-brl
C9orf169	375791	genome.wustl.edu	37	9	140120100	140120100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199001.2	+1	validated	p.K9N	1.000	44	0%	41	29.3%	2	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DUF2477
SLC34A3	142680	genome.wustl.edu	37	9	140127500	140127500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080877.2	+1	reviewed	p.V165I	1.000	43	0%	69	17.4%	0	-	benign(0.084)	tolerated(1)	neutral(0.006)	HMMPfam_Na_Pi_cotrans
FAM166A	401565	genome.wustl.edu	37	9	140139867	140139867	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001710.1	-1	predicted	p.P138	0.040	192	0%	248	29%	0	-	-	-	-	NULL
C9orf173	441476	genome.wustl.edu	37	9	140146894	140146894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004353.2	+1	validated	p.G137S	0.980	50	0%	97	23.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
COBRA1	25920	genome.wustl.edu	37	9	140161501	140161501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015456.3	+1	validated	p.V401F	0.002	110	0%	99	22.2%	120	46.6%	benign(0.167)	deleterious(0.01)	neutral(0.421)	HMMPfam_COBRA1
ENTPD8	377841	genome.wustl.edu	37	9	140332457	140332457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033113.1	-1	validated	p.T69M	1.000	72	0%	67	29.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_GDA1_CD39
NELF	26012	genome.wustl.edu	37	9	140343912	140343912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130969.1	-1	reviewed	p.F509L	1.000	78	1.3%	79	31.6%	29	37.9%	probably_damaging(0.99)	tolerated(0.12)	deleterious(0.702)	NULL
NELF	26012	genome.wustl.edu	37	9	140351951	140351951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130969.1	-1	reviewed	p.P179H	0.426	14	0%	15	33.3%	6	16.6%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
PNPLA7	375775	genome.wustl.edu	37	9	140357963	140357963	+	Missense_Mutation	SNP	G	G	A	rs181370285	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098537.1	-1	validated	p.R1083C	1.000	48	0%	54	20.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
PNPLA7	375775	genome.wustl.edu	37	9	140361802	140361802	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098537.1	-1	validated	p.S1002	1.000	97	0%	114	19.3%	0	-	-	-	-	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
PNPLA7	375775	genome.wustl.edu	37	9	140437885	140437885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098537.1	-1	validated	p.R169W	0.926	85	0%	72	30.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_cAMP-binding domain-like
EHMT1	79813	genome.wustl.edu	37	9	140611197	140611197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000460843	+1	known	p.A69T	0.001	141	0%	114	21.9%	14	50%	benign(0.418)	deleterious(0.05)	deleterious(0.481)	NULL
EHMT1	79813	genome.wustl.edu	37	9	140638477	140638477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000460843	+1	known	p.A369T	0.012	76	0%	80	23.7%	22	45.4%	benign(0.132)	deleterious(0.02)	neutral(0.394)	NULL
EHMT1	79813	genome.wustl.edu	37	9	140707898	140707898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000460843	+1	known	p.E1032D	1.000	71	0%	72	18.1%	51	35.2%	benign(0.351)	deleterious(0.03)	deleterious(0.475)	HMMSmart_SM00468,HMMPfam_Pre-SET,superfamily_SET domain
EHMT1	79813	genome.wustl.edu	37	9	140711892	140711892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000460843	+1	known	p.A1126T	0.991	101	0%	145	20.7%	54	40.7%	benign(0)	tolerated(0.87)	neutral(0.001)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
CACNA1B	774	genome.wustl.edu	37	9	140880876	140880876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000718.2	+1	validated	p.S594Y	1.000	166	0.6%	99	18.2%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
DIP2C	22982	genome.wustl.edu	37	10	329333	329333	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014974.2	-1	reviewed	p.D1391	0.075	354	0%	275	23.6%	4	25%	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
DIP2C	22982	genome.wustl.edu	37	10	465072	465072	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014974.2	-1	reviewed	p.P224	0.003	225	0.4%	247	24.3%	4	50%	-	-	-	NULL
PITRM1	10531	genome.wustl.edu	37	10	3202075	3202075	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014889.2	-1	validated	p.K324	0.510	398	0.3%	250	24.4%	28	39.2%	-	-	-	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase
AKR1C3	8644	genome.wustl.edu	37	10	5144402	5144402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003739.4	+1	reviewed	p.W227L	1.000	291	0%	130	17.7%	66	0%	possibly_damaging(0.865)	deleterious(0)	deleterious(0.780)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
UCN3	114131	genome.wustl.edu	37	10	5415922	5415922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053049.2	+1	reviewed	p.T80I	0.924	93	0%	68	13.2%	0	-	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	NULL
TUBAL3	79861	genome.wustl.edu	37	10	5435682	5435682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024803.2	-1	validated	p.R380Q	0.996	121	0%	84	10.7%	1	0%	benign(0.003)	deleterious(0)	neutral(0.445)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
TUBAL3	79861	genome.wustl.edu	37	10	5436212	5436212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024803.2	-1	validated	p.E203D	1.000	408	0%	264	19.3%	0	-	benign(0.02)	tolerated(0.06)	neutral(0.324)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
NET1	10276	genome.wustl.edu	37	10	5496441	5496441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001047160.1	+1	validated	p.H328Y	1.000	207	0%	196	23%	18	27.7%	benign(0.25)	tolerated(0.65)	neutral(0.028)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1
NET1	10276	genome.wustl.edu	37	10	5498173	5498173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001047160.1	+1	validated	p.L441M	1.000	142	0%	107	15%	30	23.3%	probably_damaging(0.982)	tolerated(0.25)	neutral(0.463)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
NET1	10276	genome.wustl.edu	37	10	5498947	5498947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001047160.1	+1	validated	p.T594N	1.000	85	0%	57	21.1%	62	46.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CALML3	810	genome.wustl.edu	37	10	5567268	5567268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005185.2	+1	validated	p.A74T	1.000	56	0%	53	20.8%	0	-	benign(0.034)	deleterious(0)	neutral(0.447)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
FAM208B	54906	genome.wustl.edu	37	10	5788563	5788563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017782.4	+1	validated	p.A1060E	0.003	202	0%	110	18.2%	5	40%	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	NULL
FBXO18	84893	genome.wustl.edu	37	10	5948281	5948281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032807.3	+1	reviewed	p.A198T	0.360	58	0%	50	20%	12	33.3%	benign(0)	tolerated(1)	-	NULL
RBM17	84991	genome.wustl.edu	37	10	6156025	6156025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145547.1	+1	reviewed	p.A315V	1.000	747	0.4%	522	19.3%	128	39.8%	benign(0.34)	deleterious(0.01)	deleterious(0.513)	HMMSmart_SM00361,superfamily_RNA-binding domain RBD
SFMBT2	57713	genome.wustl.edu	37	10	7327800	7327800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000379713	-1	known	p.Y185H	0.002	389	0%	160	20%	1	0%	benign(0.005)	deleterious(0)	neutral(0.445)	NULL
ITIH5	80760	genome.wustl.edu	37	10	7618515	7618515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030569.5	-1	validated	p.V627I	0.000	33	0%	13	53.8%	7	57.1%	benign(0.048)	tolerated(0.06)	neutral(0.326)	NULL
ITIH2	3698	genome.wustl.edu	37	10	7769035	7769035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002216.2	+1	validated	p.Q369H	0.899	425	0%	243	27.6%	0	-	benign(0.065)	deleterious(0.01)	neutral(0.410)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
ITIH2	3698	genome.wustl.edu	37	10	7771917	7771917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002216.2	+1	validated	p.E428K	1.000	304	0%	198	19.7%	0	-	possibly_damaging(0.773)	deleterious(0.03)	deleterious(0.652)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
USP6NL	9712	genome.wustl.edu	37	10	11523807	11523807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080491.2	-1	validated	p.T364I	0.040	258	0%	198	26.3%	4	25%	benign(0.012)	deleterious(0.03)	neutral(0.365)	superfamily_Ypt/Rab-GAP domain of gyp1p
ECHDC3	79746	genome.wustl.edu	37	10	11805518	11805518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024693.4	+1	validated	p.P296H	1.000	19	0%	26	26.9%	43	90.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ClpP/crotonase
DHTKD1	55526	genome.wustl.edu	37	10	12162227	12162227	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018706.5	+1	validated	p.S873	0.166	477	0%	465	12%	14	21.4%	-	-	-	NULL
SEC61A2	55176	genome.wustl.edu	37	10	12197904	12197904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018144.3	+1	reviewed	p.S197N	1.000	417	0.2%	171	20.5%	5	40%	benign(0.235)	deleterious(0)	neutral(0.468)	HMMPfam_SecY,superfamily_Preprotein translocase SecY subunit
MCM10	55388	genome.wustl.edu	37	10	13214437	13214437	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182751.2	+1	validated	p.T137	0.398	221	0%	139	18.7%	4	25%	-	-	-	NULL
PHYH	5264	genome.wustl.edu	37	10	13323039	13323039	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006214.3	-1	reviewed	p.I300	0.127	626	0.2%	455	25.3%	49	36.7%	-	-	-	NULL
PHYH	5264	genome.wustl.edu	37	10	13330526	13330526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006214.3	-1	reviewed	p.R171H	1.000	89	0%	81	28.4%	53	39.6%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_PhyH
LOC100287471	100287471	genome.wustl.edu	37	10	13350249	13350249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342961.1	-1	model	p.G67C	0.931	63	0%	44	20.5%	0	-	probably_damaging(0.959)	tolerated(0.11)	deleterious(0.674)	NULL
LOC100287471	100287471	genome.wustl.edu	37	10	13350348	13350348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342961.1	-1	model	p.A34T	0.911	73	0%	45	28.9%	0	-	benign(0)	tolerated(1)	-	NULL
SEPHS1	22929	genome.wustl.edu	37	10	13380725	13380725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012247.3	-1	reviewed	p.V93I	1.000	238	0%	185	23.2%	96	38.5%	benign(0.012)	tolerated(0.2)	neutral(0.050)	HMMPfam_AIRS,superfamily_PurM N-terminal domain-like
SEPHS1	22929	genome.wustl.edu	37	10	13386789	13386789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012247.3	-1	reviewed	p.E54D	1.000	151	0%	221	20.4%	46	47.8%	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
BEND7	222389	genome.wustl.edu	37	10	13494557	13494557	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152751.2	-1	validated	p.R337W	1.000	468	0%	324	26.9%	12	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BEN
FRMD4A	55691	genome.wustl.edu	37	10	13698769	13698769	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018027.3	-1	validated	p.K940	0.995	40	0%	51	33.3%	8	12.5%	-	-	-	NULL
DCLRE1C	64421	genome.wustl.edu	37	10	14950573	14950573	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033855.1	-1	reviewed	p.N638T	0.000	773	0%	307	25.7%	11	54.5%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
FAM171A1	221061	genome.wustl.edu	37	10	15255565	15255565	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010924.1	-1	validated	p.N674	0.932	178	0%	144	13.2%	17	35.2%	-	-	-	HMMPfam_UPF0560
FAM171A1	221061	genome.wustl.edu	37	10	15255731	15255731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010924.1	-1	validated	p.S619F	0.853	108	0.9%	89	19.1%	9	44.4%	possibly_damaging(0.882)	deleterious(0.01)	deleterious(0.750)	HMMPfam_UPF0560
FAM171A1	221061	genome.wustl.edu	37	10	15256022	15256022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010924.1	-1	validated	p.A522V	0.004	170	0%	121	19.8%	17	47%	benign(0)	tolerated(0.78)	neutral(0.001)	HMMPfam_UPF0560
PTER	9317	genome.wustl.edu	37	10	16526441	16526441	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001484.1	+1	validated	p.L20	1.000	127	0%	28	17.9%	6	33.3%	-	-	-	HMMPfam_PTE,superfamily_Metallo-dependent hydrolases
PTER	9317	genome.wustl.edu	37	10	16528493	16528493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001484.1	+1	validated	p.A192D	0.996	164	0%	33	24.2%	11	54.5%	benign(0.062)	tolerated(0.57)	neutral(0.010)	HMMPfam_PTE,superfamily_Metallo-dependent hydrolases
CUBN	8029	genome.wustl.edu	37	10	17113487	17113487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001081.3	-1	reviewed	p.L855I	0.739	297	0%	108	23.1%	1	100%	benign(0.002)	tolerated(0.86)	neutral(0.001)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	17156057	17156057	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001081.3	-1	reviewed	p.Q284	0.001	74	0%	42	19%	0	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
TRDMT1	1787	genome.wustl.edu	37	10	17199740	17199740	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004412.5	-1	reviewed	p.K196T	0.386	425	0%	195	19.5%	1	0%	benign(0.282)	tolerated(0.17)	neutral(0.145)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
VIM	7431	genome.wustl.edu	37	10	17275845	17275845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003380.3	+1	reviewed	p.T266M	1.000	90	0%	58	25.9%	1649	28.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Filament
ST8SIA6	338596	genome.wustl.edu	37	10	17401523	17401523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004470.1	-1	validated	p.A123T	0.997	196	0.5%	90	14.4%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	HMMPfam_Glyco_transf_29
CACNB2	783	genome.wustl.edu	37	10	18690892	18690892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201596.2	+1	reviewed	p.D85N	1.000	183	0%	79	11.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CACNB2	783	genome.wustl.edu	37	10	18823029	18823029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201596.2	+1	reviewed	p.R360M	1.000	268	0%	103	21.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
CACNB2	783	genome.wustl.edu	37	10	18823141	18823141	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201596.2	+1	reviewed	p.K397	1.000	299	0%	109	18.3%	0	-	-	-	-	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
CACNB2	783	genome.wustl.edu	37	10	18825103	18825103	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201596.2	+1	reviewed	p.D427A	1.000	246	0%	118	22%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
NEBL	10529	genome.wustl.edu	37	10	21157634	21157634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006393.2	-1	reviewed	p.D215Y	1.000	346	0%	112	17.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nebulin,HMMSmart_SM00227
MLLT10	8028	genome.wustl.edu	37	10	21901363	21901363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004641.2	+1	validated	p.Q164H	1.000	218	0%	125	14.4%	1	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMSmart_PHD
MLLT10	8028	genome.wustl.edu	37	10	21977432	21977432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004641.2	+1	validated	p.S571N	0.046	352	0%	105	24.8%	1	100%	benign(0.205)	deleterious(0.01)	neutral(0.426)	NULL
MLLT10	8028	genome.wustl.edu	37	10	22015231	22015231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004641.2	+1	validated	p.R662I	1.000	400	0%	258	18.2%	5	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SPAG6	9576	genome.wustl.edu	37	10	22700066	22700066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012443.2	+1	reviewed	p.I474T	1.000	275	0%	256	26.2%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	superfamily_ARM repeat
PIP4K2A	5305	genome.wustl.edu	37	10	22828987	22828987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005028.4	-1	reviewed	p.E351D	1.000	196	0%	108	23.1%	15	40%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
ARMC3	219681	genome.wustl.edu	37	10	23297255	23297255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173081.3	+1	validated	p.S627N	1.000	169	0%	95	23.2%	6	16.6%	possibly_damaging(0.658)	tolerated(0.09)	deleterious(0.529)	NULL
ARMC3	219681	genome.wustl.edu	37	10	23319619	23319619	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173081.3	+1	validated	p.E714*	1.000	660	0%	172	23.8%	14	14.2%	-	-	-	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24722064	24722064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019590.3	+1	validated	p.V232I	1.000	190	0%	112	19.6%	5	0%	probably_damaging(0.965)	tolerated(0.06)	deleterious(0.730)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24833393	24833393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019590.3	+1	validated	p.P1732S	0.897	174	0%	89	15.7%	45	44.4%	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24874032	24874032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020824.3	-1	validated	p.S1729L	0.926	212	0%	82	24.4%	23	34.7%	benign(0.032)	deleterious(0.04)	neutral(0.350)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24874437	24874437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020824.3	-1	validated	p.T1594I	0.022	165	0%	73	32.9%	33	45.4%	benign(0.001)	tolerated(0.3)	neutral(0.029)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24910181	24910181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020824.3	-1	validated	p.A215T	1.000	202	0%	80	22.5%	7	42.8%	possibly_damaging(0.476)	tolerated(0.34)	neutral(0.180)	NULL
ENKUR	219670	genome.wustl.edu	37	10	25284595	25284595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145010.2	-1	provisional	p.P143T	1.000	322	0%	269	23%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
THNSL1	79896	genome.wustl.edu	37	10	25313659	25313659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024838.4	+1	validated	p.D503N	1.000	129	0%	115	22.6%	6	66.6%	probably_damaging(1)	tolerated(0.95)	deleterious(0.500)	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
GPR158	57512	genome.wustl.edu	37	10	25464634	25464634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020752.2	+1	validated	p.K95N	0.989	21	0%	11	45.5%	0	-	benign(0.198)	deleterious(0.01)	neutral(0.425)	NULL
GPR158	57512	genome.wustl.edu	37	10	25861655	25861655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020752.2	+1	validated	p.A531V	0.992	478	0%	232	22.8%	0	-	benign(0.268)	tolerated(0.4)	neutral(0.044)	HMMPfam_7tm_3
GPR158	57512	genome.wustl.edu	37	10	25885645	25885645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020752.2	+1	validated	p.R691Q	0.998	246	0.4%	72	26.4%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26241089	26241089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017433.4	+1	reviewed	p.P17H	1.000	232	0%	67	23.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like
MYO3A	53904	genome.wustl.edu	37	10	26455091	26455091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017433.4	+1	reviewed	p.A1032D	1.000	177	0%	60	18.3%	0	-	possibly_damaging(0.908)	deleterious(0.02)	deleterious(0.744)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO3A	53904	genome.wustl.edu	37	10	26500838	26500838	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017433.4	+1	reviewed	p.F1599	1.000	51	0%	56	26.8%	0	-	-	-	-	NULL
GAD2	2572	genome.wustl.edu	37	10	26559670	26559670	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000818.2	+1	reviewed	p.I359	1.000	137	0%	43	20.9%	0	-	-	-	-	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
YME1L1	10730	genome.wustl.edu	37	10	27403484	27403484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139312.1	-1	reviewed	p.S715Y	1.000	578	0%	343	17.2%	125	39.2%	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_Peptidase_M41
YME1L1	10730	genome.wustl.edu	37	10	27411876	27411876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139312.1	-1	reviewed	p.V434I	1.000	334	0%	151	28.5%	63	42.8%	possibly_damaging(0.896)	tolerated(1)	neutral(0.353)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
MASTL	84930	genome.wustl.edu	37	10	27469967	27469967	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032844.3	+1	reviewed	p.Q783H	0.627	446	0%	149	10.1%	15	13.3%	benign(0.022)	deleterious(0)	neutral(0.446)	superfamily_Kinase_like,HMMPfam_Pkinase
MASTL	84930	genome.wustl.edu	37	10	27469971	27469971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032844.3	+1	reviewed	p.V785L	1.000	428	0%	142	23.9%	10	40%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_Kinase_like,HMMPfam_Pkinase
MPP7	143098	genome.wustl.edu	37	10	28409157	28409157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173496.3	-1	validated	p.A285T	1.000	278	0%	95	21.1%	8	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_2
WAC	51322	genome.wustl.edu	37	10	28897220	28897220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016628.3	+1	reviewed	p.A342V	1.000	324	0%	272	21.7%	63	42.8%	-	-	-	NULL
BAMBI	25805	genome.wustl.edu	37	10	28970945	28970945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012342.2	+1	reviewed	p.R133I	1.000	306	0%	275	22.9%	14	64.2%	possibly_damaging(0.444)	deleterious(0.02)	deleterious(0.528)	NULL
BAMBI	25805	genome.wustl.edu	37	10	28971137	28971137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012342.2	+1	reviewed	p.S197I	1.000	267	0%	258	23.3%	28	42.8%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
SVIL	6840	genome.wustl.edu	37	10	29788161	29788161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021738.2	-1	reviewed	p.T1183M	1.000	327	0.3%	198	17.2%	4	25%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
SVIL	6840	genome.wustl.edu	37	10	29812598	29812598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021738.2	-1	reviewed	p.A982V	0.005	338	0%	203	28.1%	6	33.3%	benign(0)	tolerated(1)	-	NULL
MTPAP	55149	genome.wustl.edu	37	10	30630457	30630457	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018109.3	-1	validated	p.K90	1.000	221	0%	138	25.4%	18	22.2%	-	-	-	NULL
MAP3K8	1326	genome.wustl.edu	37	10	30736868	30736868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005204.2	+1	reviewed	p.A165V	1.000	439	0%	229	21.4%	1	0%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LYZL2	119180	genome.wustl.edu	37	10	30900899	30900899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183058.2	-1	validated	p.D190E	0.722	576	0.2%	190	16.8%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955
LYZL2	119180	genome.wustl.edu	37	10	30915834	30915834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183058.2	-1	validated	p.A50V	0.008	333	0.3%	188	14.9%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
LOC645954	645954	genome.wustl.edu	37	10	30986316	30986316	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_017086.3	+1	model	NULL	1.000	94	0%	41	24.4%	1	0%	-	-	-	-
LOC645954	645954	genome.wustl.edu	37	10	31001586	31001586	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_017086.3	+1	model	NULL	1.000	197	0%	65	13.8%	0	-	-	-	-	-
ZNF438	220929	genome.wustl.edu	37	10	31138756	31138756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143766.1	-1	validated	p.A193V	0.000	429	0%	307	45.3%	4	75%	benign(0.002)	tolerated(0.13)	neutral(0.253)	NULL
ZEB1	6935	genome.wustl.edu	37	10	31809345	31809345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030751.5	+1	reviewed	p.A361D	1.000	273	0%	63	19%	3	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
ZEB1	6935	genome.wustl.edu	37	10	31809757	31809757	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030751.5	+1	reviewed	p.V498	0.051	63	0%	31	22.6%	1	0%	-	-	-	NULL
KIF5B	3799	genome.wustl.edu	37	10	32317452	32317452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004521.2	-1	validated	p.M543I	1.000	620	0%	529	24.4%	32	43.7%	benign(0.008)	tolerated(0.17)	neutral(0.059)	NULL
KIF5B	3799	genome.wustl.edu	37	10	32323659	32323659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004521.2	-1	validated	p.T357N	1.000	260	0%	214	16.4%	20	45%	benign(0.281)	tolerated(0.32)	neutral(0.110)	NULL
C10orf68	79741	genome.wustl.edu	37	10	33103363	33103363	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024688.2	+1	validated	p.R326*	0.001	368	0%	124	25%	0	-	-	-	-	NULL
C10orf68	79741	genome.wustl.edu	37	10	33134501	33134501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024688.2	+1	validated	p.T399N	0.000	227	0%	77	24.7%	0	-	benign(0.099)	deleterious(0.03)	neutral(0.372)	NULL
NRP1	8829	genome.wustl.edu	37	10	33475324	33475324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003873.5	-1	validated	p.A719T	1.000	113	0%	49	20.4%	28	35.7%	possibly_damaging(0.797)	tolerated(0.17)	neutral(0.358)	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1
NRP1	8829	genome.wustl.edu	37	10	33481291	33481291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003873.5	-1	validated	p.F660L	1.000	365	0%	152	21.7%	37	37.8%	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_MAM,HMMSmart_SM00137
NRP1	8829	genome.wustl.edu	37	10	33491728	33491728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000374823	-1	known	p.P652L	0.000	126	0%	104	26%	1	100%	probably_damaging(0.988)	-	-	NULL
PARD3	56288	genome.wustl.edu	37	10	34400107	34400107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019619.3	-1	validated	p.F1354S	1.000	52	0%	41	22%	11	72.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CCNY	219771	genome.wustl.edu	37	10	35854954	35854954	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145012.4	+1	validated	p.N250	0.925	215	0%	118	22.9%	50	32%	-	-	-	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
NAMPTL	646309	genome.wustl.edu	37	10	36812040	36812040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000440465	-1	known	p.L375I	1.000	421	0%	616	21.9%	2	0%	benign(0.033)	tolerated(0.1)	neutral(0.288)	HMMPfam_NAPRTase
NAMPTL	646309	genome.wustl.edu	37	10	36812703	36812703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000440465	-1	known	p.A154T	1.000	478	0%	626	17.9%	26	0%	benign(0.002)	tolerated(0.37)	neutral(0.019)	NULL
NAMPTL	646309	genome.wustl.edu	37	10	36812825	36812825	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000440465	-1	known	p.F113C	1.000	543	0%	771	14%	9	0%	probably_damaging(0.999)	tolerated(0.32)	deleterious(0.514)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37431077	37431077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052997.2	+1	validated	p.A362T	0.003	318	0.3%	169	17.2%	0	-	benign(0.101)	tolerated(1)	neutral(0.007)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37436342	37436342	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052997.2	+1	validated	p.E444	0.001	182	0%	116	13.8%	0	-	-	-	-	NULL
ZNF248	57209	genome.wustl.edu	37	10	38121084	38121084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021045.1	-1	provisional	p.R400K	1.000	350	0%	125	16%	2	0%	benign(0.149)	tolerated(0.16)	neutral(0.072)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF25	219749	genome.wustl.edu	37	10	38246370	38246370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145011.2	-1	provisional	p.N40K	0.996	318	0%	168	13.1%	0	-	benign(0.026)	deleterious(0)	neutral(0.446)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF33B	7582	genome.wustl.edu	37	10	43089048	43089048	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006955.1	-1	provisional	p.F450	0.910	435	0%	160	22.5%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF33B	7582	genome.wustl.edu	37	10	43089614	43089614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006955.1	-1	provisional	p.L262F	0.433	282	0%	78	16.7%	9	22.2%	benign(0.002)	tolerated(0.2)	neutral(0.049)	NULL
BMS1	9790	genome.wustl.edu	37	10	43316001	43316001	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014753.3	+1	reviewed	p.R939*	0.996	77	0%	64	10.9%	25	4%	-	-	-	HMMPfam_DUF663
RET	5979	genome.wustl.edu	37	10	43623618	43623618	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020975.4	+1	reviewed	p.G1082	1.000	255	0.4%	202	24.8%	0	-	-	-	-	NULL
ZNF485	220992	genome.wustl.edu	37	10	44112192	44112192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145312.3	+1	validated	p.R234I	1.000	213	0%	221	25.8%	8	75%	benign(0.288)	tolerated(0.06)	neutral(0.411)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CXCL12	6387	genome.wustl.edu	37	10	44874128	44874128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033886.2	-1	reviewed	p.K75E	0.240	669	0%	605	25.8%	23	0%	probably_damaging(0.99)	tolerated(0.68)	neutral(0.444)	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8
RASSF4	83937	genome.wustl.edu	37	10	45478023	45478023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032023.3	+1	reviewed	p.R65W	0.992	93	0%	133	15.8%	20	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ALOX5	240	genome.wustl.edu	37	10	45878080	45878080	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000698.2	+1	reviewed	p.C100	1.000	95	0%	88	26.1%	15	26.6%	-	-	-	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
ZFAND4	93550	genome.wustl.edu	37	10	46113706	46113706	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128324.1	-1	validated	p.E644*	0.992	280	0%	158	17.7%	4	50%	-	-	-	NULL
ZFAND4	93550	genome.wustl.edu	37	10	46135367	46135367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128324.1	-1	validated	p.T205N	0.000	397	0%	203	27.6%	8	50%	benign(0.008)	tolerated(0.19)	neutral(0.050)	NULL
LOC100288690	100288690	genome.wustl.edu	37	10	46217814	46217814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002342980.1	-1	model	p.R18M	0.999	1245	0%	1163	13.7%	0	-	-	-	-	NULL
FAM21C	253725	genome.wustl.edu	37	10	46280015	46280015	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015262.2	+1	validated	p.G825	0.031	560	0%	278	23.4%	13	61.5%	-	-	-	NULL
ZNF488	118738	genome.wustl.edu	37	10	48370793	48370793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153034.2	+1	provisional	p.K87N	0.004	20	0%	20	40%	0	-	possibly_damaging(0.815)	tolerated(0.05)	deleterious(0.653)	NULL
ZNF488	118738	genome.wustl.edu	37	10	48371273	48371273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153034.2	+1	provisional	p.Q247H	0.007	76	0%	114	17.5%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
GDF10	2662	genome.wustl.edu	37	10	48428867	48428867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004962.2	-1	reviewed	p.R340H	0.324	64	0%	119	29.4%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
FRMPD2	143162	genome.wustl.edu	37	10	49381020	49381020	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018071.3	-1	reviewed	p.G1064	0.969	168	0%	37	10.8%	0	-	-	-	-	NULL
FRMPD2	143162	genome.wustl.edu	37	10	49414915	49414915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018071.3	-1	reviewed	p.R558M	0.000	270	0%	96	21.9%	1	100%	probably_damaging(0.964)	deleterious(0.03)	deleterious(0.771)	HMMPfam_FERM_C,superfamily_PH domain-like
MAPK8	5599	genome.wustl.edu	37	10	49609795	49609795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139047.1	+1	reviewed	p.P31L	1.000	213	0%	164	23.8%	4	25%	benign(0.025)	tolerated(0.07)	neutral(0.320)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ARHGAP22	58504	genome.wustl.edu	37	10	49667831	49667831	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021226.2	-1	validated	p.E185	0.997	55	0%	72	23.6%	4	0%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ARHGAP22	58504	genome.wustl.edu	37	10	49763555	49763555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021226.2	-1	validated	p.P92L	0.969	177	0%	121	25.6%	1	0%	benign(0.002)	tolerated(0.38)	neutral(0.018)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
WDFY4	57705	genome.wustl.edu	37	10	49933924	49933924	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020945.1	+1	validated	e5-2	1.000	151	0%	90	16.7%	0	-	-	-	-	-
WDFY4	57705	genome.wustl.edu	37	10	49994705	49994705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020945.1	+1	validated	p.P1200S	1.000	321	0%	133	21.8%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
WDFY4	57705	genome.wustl.edu	37	10	50004440	50004440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020945.1	+1	validated	p.R1452K	0.002	246	0%	92	15.2%	0	-	benign(0.014)	tolerated(0.11)	neutral(0.272)	NULL
C10orf71	118461	genome.wustl.edu	37	10	50531439	50531439	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135196.1	+1	validated	p.H283	0.745	109	0%	124	17.7%	0	-	-	-	-	NULL
C10orf71	118461	genome.wustl.edu	37	10	50531494	50531494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135196.1	+1	validated	p.A302T	0.002	116	0%	115	13.9%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	NULL
DRGX	644168	genome.wustl.edu	37	10	50574234	50574234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080520.1	-1	provisional	p.P245L	0.781	111	0%	72	26.4%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
PGBD3	267004	genome.wustl.edu	37	10	50724040	50724040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170753.2	-1	validated	p.T374I	0.003	155	0%	39	17.9%	9	77.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ERCC6	2074	genome.wustl.edu	37	10	50732357	50732357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000124.2	-1	reviewed	p.E373D	0.988	194	0%	164	28.7%	4	75%	probably_damaging(0.997)	tolerated(0.32)	deleterious(0.490)	NULL
OGDHL	55753	genome.wustl.edu	37	10	50952752	50952752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018245.2	-1	validated	p.R559M	1.000	184	0%	218	26.6%	41	39%	benign(0.257)	tolerated(0.08)	neutral(0.327)	HMMPfam_E1_dh,superfamily_SSF52518
OGDHL	55753	genome.wustl.edu	37	10	50953417	50953417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018245.2	-1	validated	p.E534D	1.000	159	0%	134	25.4%	47	34%	benign(0.012)	tolerated(0.2)	neutral(0.050)	HMMPfam_E1_dh,superfamily_SSF52518
OGDHL	55753	genome.wustl.edu	37	10	50955146	50955146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018245.2	-1	validated	p.A366T	1.000	326	0%	252	26.6%	53	64.1%	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	HMMPfam_E1_dh,superfamily_SSF52518
OGDHL	55753	genome.wustl.edu	37	10	50955188	50955188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018245.2	-1	validated	p.N352D	1.000	371	0%	283	16.3%	52	25%	benign(0)	tolerated(0.16)	neutral(0.059)	HMMPfam_E1_dh,superfamily_SSF52518
OGDHL	55753	genome.wustl.edu	37	10	50960759	50960759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018245.2	-1	validated	p.D135Y	1.000	113	0%	96	27.1%	35	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52518
PARG	8505	genome.wustl.edu	37	10	51087755	51087755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003631.2	-1	reviewed	p.S651L	0.999	517	0%	185	17.8%	13	30.7%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_PARG_cat
MSMB	4477	genome.wustl.edu	37	10	51556821	51556821	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002443.2	+1	reviewed	p.C60W	0.002	201	0%	122	25.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PSP94
NCOA4	8031	genome.wustl.edu	37	10	51585491	51585491	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145260.1	+1	reviewed	p.S546	0.130	82	0%	54	24.1%	47	29.7%	-	-	-	NULL
PRKG1	5592	genome.wustl.edu	37	10	54031208	54031208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006258.2	+1	validated	p.E424D	1.000	165	0%	25	16%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DKK1	22943	genome.wustl.edu	37	10	54074791	54074791	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012242.2	+1	reviewed	p.R118*	1.000	23	0%	36	30.6%	1	0%	-	-	-	HMMPfam_Dickkopf_N
PCDH15	65217	genome.wustl.edu	37	10	55570392	55570392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142769.1	-1	reviewed	p.R1481Q	0.999	468	0%	257	24.1%	0	-	possibly_damaging(0.883)	deleterious(0)	deleterious(0.789)	NULL
PCDH15	65217	genome.wustl.edu	37	10	55581785	55581785	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142763.1	-1	reviewed	p.S1908R	1.000	821	0%	849	24.1%	0	-	unknown(0)	deleterious(0)	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55663050	55663050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142763.1	-1	reviewed	p.G1157S	1.000	298	0%	153	24.2%	0	-	probably_damaging(0.999)	tolerated(0.41)	deleterious(0.505)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDH15	65217	genome.wustl.edu	37	10	55700629	55700629	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142763.1	-1	reviewed	p.E1082*	1.000	287	0%	153	24.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH15	65217	genome.wustl.edu	37	10	55719581	55719581	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142763.1	-1	reviewed	p.D1016E	0.999	223	0%	101	21.8%	0	-	probably_damaging(0.999)	tolerated(0.48)	deleterious(0.501)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH15	65217	genome.wustl.edu	37	10	55892663	55892663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142763.1	-1	reviewed	p.R635M	1.000	330	0%	175	23.4%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDH15	65217	genome.wustl.edu	37	10	56287590	56287590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142763.1	-1	reviewed	p.D52Y	1.000	290	0%	170	23.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CCDC6	8030	genome.wustl.edu	37	10	61612436	61612436	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005436.3	-1	validated	p.E110*	1.000	359	0%	180	20%	15	0%	-	-	-	HMMPfam_DUF2046
ANK3	288	genome.wustl.edu	37	10	61823957	61823957	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020987.2	-1	reviewed	p.L4137V	1.000	237	0%	92	20.7%	15	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
ANK3	288	genome.wustl.edu	37	10	61832248	61832248	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020987.2	-1	reviewed	p.N2797	0.000	214	0%	64	28.1%	0	-	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61842462	61842462	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020987.2	-1	reviewed	p.L1412	0.119	479	0%	191	26.2%	12	33.3%	-	-	-	NULL
CDK1	983	genome.wustl.edu	37	10	62539953	62539953	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001786.4	+1	reviewed	p.I10	1.000	331	0%	459	13.5%	34	26.4%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
RHOBTB1	9886	genome.wustl.edu	37	10	62631290	62631290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014836.4	-1	reviewed	p.R681C	1.000	590	0%	212	18.9%	6	83.3%	possibly_damaging(0.693)	deleterious(0.02)	deleterious(0.631)	NULL
ARID5B	84159	genome.wustl.edu	37	10	63760010	63760010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032199.2	+1	validated	p.Q221H	1.000	154	0%	49	12.2%	3	66.6%	benign(0.253)	deleterious(0.05)	neutral(0.371)	NULL
RTKN2	219790	genome.wustl.edu	37	10	64022469	64022469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145307.2	-1	provisional	p.L58F	1.000	303	0%	381	21.5%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00742
JMJD1C	221037	genome.wustl.edu	37	10	64945323	64945323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032776.1	-1	validated	p.R2277K	1.000	372	0%	310	15.5%	13	7.6%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMSmart_SM00558
JMJD1C	221037	genome.wustl.edu	37	10	64950714	64950714	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000327520	-1	known	p.Y624C	0.862	488	0.2%	252	25%	10	60%	-	-	-	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64957268	64957268	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000327520	-1	known	p.V396A	1.000	347	0%	218	15.6%	4	100%	-	-	-	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64967069	64967069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032776.1	-1	validated	p.A1454T	1.000	57	0%	66	13.6%	6	0%	possibly_damaging(0.577)	tolerated(0.12)	neutral(0.459)	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64968244	64968244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032776.1	-1	validated	p.H1062R	0.996	417	0%	127	17.3%	4	25%	probably_damaging(0.999)	tolerated(0.32)	deleterious(0.514)	NULL
CTNNA3	29119	genome.wustl.edu	37	10	67748548	67748548	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127384.1	-1	validated	p.G723*	1.000	267	0%	138	21%	0	-	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
CTNNA3	29119	genome.wustl.edu	37	10	68040264	68040264	+	Silent	SNP	T	T	G	rs182490263	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127384.1	-1	validated	p.T616	0.999	419	0%	78	21.8%	0	-	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
MYPN	84665	genome.wustl.edu	37	10	69948824	69948824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032578.2	+1	validated	p.V956I	1.000	189	0%	63	19%	0	-	possibly_damaging(0.882)	tolerated(1)	neutral(0.344)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ATOH7	220202	genome.wustl.edu	37	10	69991233	69991233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145178.2	-1	validated	p.P68T	0.993	57	0%	60	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
HNRNPH3	3189	genome.wustl.edu	37	10	70098422	70098422	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012207.2	+1	reviewed	p.R138	1.000	676	0%	495	10.7%	162	0%	-	-	-	NULL
DNA2	1763	genome.wustl.edu	37	10	70179610	70179610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080449.1	-1	provisional	p.N999D	1.000	409	0%	309	17.2%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNA2	1763	genome.wustl.edu	37	10	70182093	70182093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080449.1	-1	provisional	p.H948Q	0.002	362	0%	220	22.7%	8	87.5%	benign(0.03)	deleterious(0.03)	neutral(0.366)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNA2	1763	genome.wustl.edu	37	10	70227935	70227935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080449.1	-1	provisional	p.S215N	1.000	413	0%	387	26.4%	2	50%	probably_damaging(0.976)	deleterious(0.03)	deleterious(0.782)	HMMPfam_Dna2
TET1	80312	genome.wustl.edu	37	10	70332414	70332414	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030625.2	+1	validated	p.R107*	0.993	124	1.6%	87	25.3%	0	-	-	-	-	NULL
TET1	80312	genome.wustl.edu	37	10	70404707	70404707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030625.2	+1	validated	p.V741I	0.979	225	0%	99	11.1%	0	-	benign(0.056)	tolerated(0.4)	neutral(0.019)	NULL
TET1	80312	genome.wustl.edu	37	10	70404827	70404827	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030625.2	+1	validated	p.E781*	0.973	162	0%	81	27.2%	0	-	-	-	-	NULL
TET1	80312	genome.wustl.edu	37	10	70405959	70405959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030625.2	+1	validated	p.R1158Q	0.036	340	0.3%	137	22.6%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
TET1	80312	genome.wustl.edu	37	10	70406353	70406353	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030625.2	+1	validated	p.T1289	0.002	219	0%	99	11.1%	1	0%	-	-	-	NULL
CCAR1	55749	genome.wustl.edu	37	10	70496642	70496642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018237.2	+1	validated	p.G28D	1.000	283	0%	110	25.5%	18	27.7%	unknown(0)	deleterious(0.01)	-	NULL
CCAR1	55749	genome.wustl.edu	37	10	70531185	70531185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018237.2	+1	validated	p.D841Y	1.000	263	0%	107	17.8%	26	19.2%	unknown(0)	deleterious(0.01)	-	NULL
ENSG00000247499	0	genome.wustl.edu	37	10	70546145	70546145	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000501160	-1	known	NULL	0.036	21	0%	26	34.6%	0	-	-	-	-	-
STOX1	219736	genome.wustl.edu	37	10	70645798	70645798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130161.2	+1	reviewed	p.R749H	0.000	274	0%	134	23.1%	1	0%	benign(0.013)	tolerated(0.08)	neutral(0.300)	NULL
STOX1	219736	genome.wustl.edu	37	10	70646249	70646249	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130161.2	+1	reviewed	p.Q899H	0.000	109	0%	53	13.2%	4	25%	benign(0.003)	tolerated(0.29)	neutral(0.029)	NULL
KIAA1279	26128	genome.wustl.edu	37	10	70775846	70775846	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015634.3	+1	reviewed	p.L514	0.002	135	0%	104	19.2%	16	56.2%	-	-	-	NULL
HKDC1	80201	genome.wustl.edu	37	10	71002996	71002996	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025130.3	+1	validated	p.G250	0.010	210	0%	152	21.1%	8	50%	-	-	-	HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain
TACR2	6865	genome.wustl.edu	37	10	71166959	71166959	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001057.2	-1	validated	p.G273	0.756	244	0%	294	26.2%	2	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TACR2	6865	genome.wustl.edu	37	10	71175704	71175704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001057.2	-1	validated	p.A126T	1.000	153	0.7%	134	22.4%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
COL13A1	1305	genome.wustl.edu	37	10	71678045	71678045	+	Missense_Mutation	SNP	C	C	T	rs191741850	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130103.1	+1	reviewed	p.A334V	0.425	183	0%	104	24%	0	-	benign(0.008)	-	-	NULL
AIFM2	84883	genome.wustl.edu	37	10	71876491	71876491	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032797.4	-1	reviewed	p.E219A	0.179	247	0%	154	19.5%	50	52%	benign(0.013)	tolerated(0.72)	neutral(0.002)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
AIFM2	84883	genome.wustl.edu	37	10	71877646	71877646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032797.4	-1	reviewed	p.A180T	1.000	83	0%	41	31.7%	39	25.6%	benign(0.313)	tolerated(0.24)	neutral(0.135)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
KIAA1274	27143	genome.wustl.edu	37	10	72307173	72307173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014431.2	+1	validated	p.R745W	1.000	87	0%	55	10.9%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRF1	5551	genome.wustl.edu	37	10	72358804	72358804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083116.1	-1	reviewed	p.R225W	0.511	130	0%	105	24.8%	61	0%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_MACPF,HMMSmart_SM00457
C10orf27	219793	genome.wustl.edu	37	10	72531188	72531188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152710.2	-1	validated	p.M334V	0.000	365	0%	246	11%	0	-	benign(0)	tolerated(1)	-	NULL
C10orf27	219793	genome.wustl.edu	37	10	72543126	72543126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152710.2	-1	validated	p.D4Y	0.181	301	0%	157	15.3%	0	-	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	NULL
UNC5B	219699	genome.wustl.edu	37	10	73051330	73051330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170744.3	+1	validated	p.S479N	1.000	108	0%	95	16.8%	4	25%	benign(0)	tolerated(1)	-	NULL
CDH23	64072	genome.wustl.edu	37	10	73199651	73199651	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022124.5	+1	reviewed	p.C21*	1.000	222	0%	170	17.1%	0	-	-	-	-	NULL
CDH23	64072	genome.wustl.edu	37	10	73544107	73544107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022124.5	+1	reviewed	p.R1811Q	1.000	75	0%	79	20.3%	1	0%	probably_damaging(1)	tolerated(0.45)	deleterious(0.512)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73553197	73553197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022124.5	+1	reviewed	p.R2171H	1.000	77	0%	54	24.1%	1	0%	possibly_damaging(0.833)	tolerated(0.13)	deleterious(0.570)	HMMSmart_SM00112,superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73563155	73563155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022124.5	+1	reviewed	p.G2617D	1.000	88	0%	54	14.8%	0	-	probably_damaging(0.996)	tolerated(0.36)	deleterious(0.482)	superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73565700	73565700	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022124.5	+1	reviewed	p.S2670	0.093	34	0%	27	18.5%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73572245	73572245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022124.5	+1	reviewed	p.P3130H	1.000	47	0%	59	32.2%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPOCK2	9806	genome.wustl.edu	37	10	73823951	73823951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014767.2	-1	validated	p.A326T	1.000	134	0%	200	22.5%	41	9.7%	benign(0.01)	tolerated(0.35)	neutral(0.021)	HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin_1
DNAJB12	54788	genome.wustl.edu	37	10	74103248	74103248	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002762.2	-1	validated	p.Y145	1.000	318	0%	306	19.6%	44	40.9%	-	-	-	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
OIT3	170392	genome.wustl.edu	37	10	74684055	74684055	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152635.1	+1	provisional	p.S340	0.996	64	1.6%	39	30.8%	0	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_SM00241
OIT3	170392	genome.wustl.edu	37	10	74684268	74684268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152635.1	+1	provisional	p.K411N	1.000	129	0%	74	9.5%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
OIT3	170392	genome.wustl.edu	37	10	74684370	74684370	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152635.1	+1	provisional	p.D445	0.986	108	0%	57	14%	0	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_SM00241
OIT3	170392	genome.wustl.edu	37	10	74692200	74692200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152635.1	+1	provisional	p.R519H	0.931	81	1.2%	70	21.4%	1	100%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
PLA2G12B	84647	genome.wustl.edu	37	10	74700957	74700957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032562.2	-1	validated	p.R146W	1.000	280	0%	122	23%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_PLA2G12,superfamily_PhospholipaseA2
FAM149B1	317662	genome.wustl.edu	37	10	74937677	74937677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173348.1	+1	validated	p.Y76H	1.000	482	0%	355	24.2%	7	57.1%	benign(0.113)	deleterious(0.01)	neutral(0.415)	NULL
DNAJC9	23234	genome.wustl.edu	37	10	75003169	75003169	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015190.3	-1	provisional	p.E258*	1.000	313	0%	333	21.6%	65	21.5%	-	-	-	NULL
TTC18	118491	genome.wustl.edu	37	10	75071662	75071662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145170.3	-1	validated	p.S435N	1.000	309	0%	116	19.8%	1	100%	benign(0.424)	tolerated(0.29)	neutral(0.167)	NULL
TTC18	118491	genome.wustl.edu	37	10	75082793	75082793	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145170.3	-1	validated	p.L350	1.000	357	0%	235	24.7%	1	0%	-	-	-	NULL
TTC18	118491	genome.wustl.edu	37	10	75101296	75101296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145170.3	-1	validated	p.G218E	1.000	227	0%	188	23.9%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
USP54	159195	genome.wustl.edu	37	10	75264678	75264678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152586.3	-1	provisional	p.R1414H	0.999	293	0%	176	11.9%	11	18.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
USP54	159195	genome.wustl.edu	37	10	75276311	75276311	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152586.3	-1	provisional	p.H1291	0.001	234	0%	97	19.6%	14	28.5%	-	-	-	NULL
MYOZ1	58529	genome.wustl.edu	37	10	75397604	75397604	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021245.2	-1	provisional	p.S50	0.004	362	0%	265	21.5%	0	-	-	-	-	HMMPfam_Calsarcin
SYNPO2L	79933	genome.wustl.edu	37	10	75407361	75407361	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114133.1	-1	validated	p.A683	0.989	40	0%	55	25.5%	0	-	-	-	-	NULL
FUT11	170384	genome.wustl.edu	37	10	75533012	75533012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173540.2	+1	validated	p.A258V	0.985	89	0%	117	25.6%	5	20%	possibly_damaging(0.833)	tolerated(0.12)	deleterious(0.578)	HMMPfam_Glyco_transf_10
KIAA0913	23053	genome.wustl.edu	37	10	75557153	75557153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015037.2	+1	validated	p.S1151I	1.000	142	0%	105	21%	29	27.5%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
NDST2	8509	genome.wustl.edu	37	10	75563042	75563042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003635.3	-1	reviewed	p.P740T	1.000	354	0%	382	19.9%	23	26%	possibly_damaging(0.844)	tolerated(0.05)	deleterious(0.669)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
VCL	7414	genome.wustl.edu	37	10	75854158	75854158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014000.2	+1	reviewed	p.E494D	0.913	115	0%	69	10.1%	25	20%	possibly_damaging(0.882)	tolerated(0.49)	neutral(0.355)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
ADK	132	genome.wustl.edu	37	10	76349047	76349047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006721.2	+1	reviewed	p.A245V	1.000	197	0%	88	17%	39	33.3%	benign(0.002)	tolerated(0.27)	neutral(0.034)	HMMPfam_PfkB,superfamily_Ribokinase-like
KAT6B	23522	genome.wustl.edu	37	10	76735539	76735539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012330.2	+1	validated	p.G482C	1.000	305	0.3%	138	18.8%	3	0%	probably_damaging(0.998)	-	-	NULL
KAT6B	23522	genome.wustl.edu	37	10	76790256	76790256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012330.2	+1	validated	p.P1892S	1.000	342	0%	261	11.5%	15	13.3%	probably_damaging(0.999)	-	-	NULL
DUSP13	51207	genome.wustl.edu	37	10	76865537	76865537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007271.1	-1	reviewed	p.R153C	0.912	26	0%	20	25%	0	-	possibly_damaging(0.509)	deleterious(0.02)	deleterious(0.553)	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
KCNMA1	3778	genome.wustl.edu	37	10	78647073	78647073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014797.2	-1	reviewed	p.S1167F	1.000	173	0%	133	18%	2	0%	possibly_damaging(0.455)	deleterious(0)	deleterious(0.594)	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78709052	78709052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014797.2	-1	reviewed	p.A799T	1.000	102	0%	35	22.9%	5	20%	possibly_damaging(0.577)	tolerated(0.14)	neutral(0.448)	NULL
POLR3A	11128	genome.wustl.edu	37	10	79745848	79745848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007055.3	-1	validated	p.D991N	1.000	648	0%	253	20.6%	2	0%	benign(0.085)	tolerated(0.27)	neutral(0.040)	HMMPfam_RNA_pol_Rpb1_5,superfamily_SSF64484
POLR3A	11128	genome.wustl.edu	37	10	79782103	79782103	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007055.3	-1	validated	p.R229*	0.991	164	0%	84	21.4%	2	0%	-	-	-	HMMPfam_RNA_pol_Rpb1_1,superfamily_SSF64484
ZMIZ1	57178	genome.wustl.edu	37	10	81053330	81053330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020338.3	+1	validated	p.R384W	1.000	10	0.000	8	0.625	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ZMIZ1	57178	genome.wustl.edu	37	10	81070924	81070924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020338.3	+1	validated	p.P1027S	1.000	50	0%	37	13.5%	7	0%	possibly_damaging(0.476)	tolerated(0.17)	neutral(0.216)	NULL
PPIF	10105	genome.wustl.edu	37	10	81109459	81109459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005729.3	+1	reviewed	p.G89S	1.000	242	0%	307	25.1%	79	24%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
PPIF	10105	genome.wustl.edu	37	10	81113552	81113552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005729.3	+1	reviewed	p.R193K	1.000	197	0%	180	23.9%	124	40.3%	benign(0)	tolerated(1)	-	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
SFTPA1	653509	genome.wustl.edu	37	10	81372076	81372076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001093770.2	+1	reviewed	p.G61S	1.000	167	0%	99	27.3%	0	-	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	HMMPfam_Collagen
FAM22B	729262	genome.wustl.edu	37	10	81463739	81463739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000429828	+1	known	p.S125L	0.047	663	0%	835	12.2%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
FAM22B	729262	genome.wustl.edu	37	10	81465951	81465951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000429828	+1	known	p.S179Y	0.009	67	0%	90	12.2%	1	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
FAM22B	729262	genome.wustl.edu	37	10	81471468	81471468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000429828	+1	known	p.R622C	0.004	205	0.5%	210	14.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C10orf57	80195	genome.wustl.edu	37	10	81841645	81841645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025125.2	+1	provisional	p.L46M	0.599	342	0%	297	22.9%	25	32%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
MAT1A	4143	genome.wustl.edu	37	10	82039978	82039978	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000429.2	-1	reviewed	p.L167R	0.999	74	0%	33	21.2%	0	-	possibly_damaging(0.457)	deleterious(0.03)	deleterious(0.514)	HMMPfam_S-AdoMet_synt_M,superfamily_S-AdoMet_synt
DYDC2	84332	genome.wustl.edu	37	10	82126651	82126651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032372.4	+1	provisional	p.A160T	0.000	102	0%	94	21.3%	1	100%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
FAM213A	84293	genome.wustl.edu	37	10	82185704	82185704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032333.4	+1	validated	p.R118M	0.001	312	0%	200	20.5%	91	45%	benign(0.186)	tolerated(0.08)	neutral(0.318)	NULL
FAM213A	84293	genome.wustl.edu	37	10	82187096	82187096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032333.4	+1	validated	p.F140L	0.986	351	0%	254	17.7%	62	46.7%	possibly_damaging(0.89)	deleterious(0)	deleterious(0.794)	NULL
SH2D4B	387694	genome.wustl.edu	37	10	82369292	82369292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207372.2	+1	validated	p.A324T	0.968	98	0%	91	22%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NRG3	10718	genome.wustl.edu	37	10	83635660	83635660	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010848.3	+1	reviewed	p.A188	0.965	53	0%	39	10.3%	0	-	-	-	-	NULL
GHITM	27069	genome.wustl.edu	37	10	85903790	85903790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014394.2	+1	validated	p.A90V	0.999	753	0%	665	23.2%	151	41%	benign(0.015)	tolerated(0.31)	neutral(0.028)	NULL
CDHR1	92211	genome.wustl.edu	37	10	85968628	85968628	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033100.2	+1	reviewed	p.L437	0.012	227	0%	188	22.3%	2	50%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
LDB3	11155	genome.wustl.edu	37	10	88477868	88477868	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007078.2	+1	reviewed	p.P608	0.000	242	0.8%	276	20.7%	1	0%	-	-	-	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
BMPR1A	657	genome.wustl.edu	37	10	88672002	88672002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004329.2	+1	reviewed	p.Y179C	0.997	261	0%	163	17.8%	5	40%	possibly_damaging(0.762)	tolerated(0.11)	deleterious(0.554)	NULL
MMRN2	79812	genome.wustl.edu	37	10	88702269	88702269	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024756.2	-1	validated	p.F758I	0.613	118	0%	185	24.3%	7	0%	probably_damaging(0.982)	tolerated(0.36)	neutral(0.447)	NULL
AGAP11	119385	genome.wustl.edu	37	10	88768605	88768605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133447.1	+1	validated	p.S199I	0.998	331	0%	243	14.8%	1	0%	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
AGAP11	119385	genome.wustl.edu	37	10	88768860	88768860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133447.1	+1	validated	p.T284M	0.994	104	0%	80	26.3%	1	0%	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
GLUD1	2746	genome.wustl.edu	37	10	88822513	88822513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005271.3	-1	reviewed	p.R274H	1.000	283	0.4%	157	22.9%	72	45.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd
FAM35A	54537	genome.wustl.edu	37	10	88912531	88912531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019054.2	+1	validated	p.V474I	0.021	222	0%	144	27.1%	15	40%	benign(0.003)	tolerated(1)	-	NULL
PAPSS2	9060	genome.wustl.edu	37	10	89475543	89475543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001015880.1	+1	reviewed	p.G270S	1.000	559	0%	136	16.9%	12	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PUA-like
PTEN	5728	genome.wustl.edu	37	10	89653780	89653780	+	Splice_Site	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000371953	+1	known	e2-2	1.000	476	0%	186	24.2%	0	-	-	-	-	-
RNLS	55328	genome.wustl.edu	37	10	90034779	90034779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018363.3	-1	validated	p.A296D	0.816	258	0%	82	24.4%	1	0%	possibly_damaging(0.529)	deleterious(0.02)	deleterious(0.561)	NULL
LIPK	643414	genome.wustl.edu	37	10	90486554	90486554	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080518.1	+1	provisional	p.S36	0.961	373	0%	265	19.6%	1	0%	-	-	-	HMMPfam_Abhydro_lipase,superfamily_SSF53474
LIPM	340654	genome.wustl.edu	37	10	90575228	90575228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128215.1	+1	validated	p.L276M	0.959	470	0%	250	19.2%	0	-	benign(0.03)	tolerated(0.31)	neutral(0.029)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
FAS	355	genome.wustl.edu	37	10	90767546	90767546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000043.3	+1	reviewed	p.H96Y	0.054	289	0%	160	25%	19	36.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
LIPA	3988	genome.wustl.edu	37	10	90974597	90974597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000235.2	-1	reviewed	p.R396S	1.000	47	0%	78	30.8%	34	29.4%	benign(0.005)	tolerated(0.39)	neutral(0.016)	superfamily_alpha/beta-Hydrolases
LIPA	3988	genome.wustl.edu	37	10	90988026	90988026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000235.2	-1	reviewed	p.S120N	1.000	365	0%	146	18.5%	25	32%	benign(0.423)	deleterious(0.01)	deleterious(0.543)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
IFIT2	3433	genome.wustl.edu	37	10	91066410	91066410	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001547.4	+1	validated	p.E233*	0.003	114	0%	37	16.2%	21	23.8%	-	-	-	superfamily_SSF48452
IFIT5	24138	genome.wustl.edu	37	10	91177231	91177231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012420.2	+1	validated	p.R92Q	0.060	197	0%	190	17.9%	35	28.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF48452
IFIT5	24138	genome.wustl.edu	37	10	91178178	91178178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012420.2	+1	validated	p.D408Y	0.000	329	0%	378	20.1%	71	38%	benign(0.038)	deleterious(0.03)	neutral(0.366)	superfamily_SSF48452
PANK1	53354	genome.wustl.edu	37	10	91371688	91371688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_148977.1	-1	reviewed	p.R274Q	1.000	196	0%	98	19.4%	3	66.6%	possibly_damaging(0.845)	tolerated(0.09)	deleterious(0.621)	HMMPfam_Fumble,superfamily_Actin-like ATPase domain
KIF20B	9585	genome.wustl.edu	37	10	91468944	91468944	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016195.2	+1	validated	p.K56N	1.000	107	0%	104	18.3%	0	-	possibly_damaging(0.881)	tolerated(0.06)	deleterious(0.666)	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF20B	9585	genome.wustl.edu	37	10	91505703	91505703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016195.2	+1	validated	p.E1321D	0.948	335	0%	134	27.6%	4	0%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
KIF20B	9585	genome.wustl.edu	37	10	91533786	91533786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016195.2	+1	validated	p.R1775Q	0.851	133	0%	43	20.9%	12	41.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
HTR7	3363	genome.wustl.edu	37	10	92508971	92508971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019859.3	-1	reviewed	p.R307I	0.979	165	0%	88	21.6%	0	-	possibly_damaging(0.91)	tolerated(0.1)	deleterious(0.649)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ANKRD1	27063	genome.wustl.edu	37	10	92675581	92675581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014391.2	-1	reviewed	p.E236D	1.000	66	0%	10	60%	2	0%	benign(0.229)	deleterious(0.03)	neutral(0.388)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD1	27063	genome.wustl.edu	37	10	92678660	92678660	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014391.2	-1	reviewed	p.F139V	1.000	362	0%	117	23.1%	1	100%	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_Ank,superfamily_ANK
PCGF5	84333	genome.wustl.edu	37	10	93024196	93024196	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032373.3	+1	provisional	p.V194	1.000	483	0%	124	29.8%	10	30%	-	-	-	NULL
TNKS2	80351	genome.wustl.edu	37	10	93593724	93593724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025235.3	+1	validated	p.L464I	1.000	344	0%	158	13.3%	2	0%	benign(0.378)	tolerated(0.33)	neutral(0.144)	HMMPfam_Ank,superfamily_ANK
TNKS2	80351	genome.wustl.edu	37	10	93608154	93608154	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025235.3	+1	validated	p.S791	0.200	95	1.1%	56	21.4%	9	22.2%	-	-	-	NULL
BTAF1	9044	genome.wustl.edu	37	10	93722343	93722343	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003972.2	+1	validated	p.G438*	1.000	185	0%	100	17%	0	-	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
LOC100128302	100128302	genome.wustl.edu	37	10	93879014	93879014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343006.1	+1	model	p.S147T	0.540	353	0%	405	19.3%	0	-	-	-	-	NULL
IDE	3416	genome.wustl.edu	37	10	94223528	94223528	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004969.3	-1	reviewed	p.Y907*	0.993	525	0%	197	24.9%	16	0%	-	-	-	superfamily_Metalloenz_metal-bd
IDE	3416	genome.wustl.edu	37	10	94225557	94225557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004969.3	-1	reviewed	p.N788K	1.000	674	0%	214	26.6%	7	85.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd
EXOC6	54536	genome.wustl.edu	37	10	94694168	94694168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019053.4	+1	reviewed	p.A374V	1.000	272	0%	140	17.1%	3	0%	benign(0.071)	tolerated(0.29)	neutral(0.034)	NULL
CYP26A1	1592	genome.wustl.edu	37	10	94836946	94836946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000783.3	+1	reviewed	p.A460V	1.000	107	0%	131	23.7%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_p450,superfamily_Cytochrome_P450
MYOF	26509	genome.wustl.edu	37	10	95132730	95132730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013451.3	-1	reviewed	p.A805V	1.000	487	0%	164	18.9%	8	50%	benign(0.141)	tolerated(0.47)	neutral(0.023)	HMMPfam_FerB
PDE6C	5146	genome.wustl.edu	37	10	95400277	95400277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006204.3	+1	reviewed	p.G567V	1.000	327	0%	91	15.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
FRA10AC1	118924	genome.wustl.edu	37	10	95430576	95430576	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145246.4	-1	reviewed	p.E286*	1.000	484	0%	159	26.4%	23	13%	-	-	-	NULL
SLC35G1	159371	genome.wustl.edu	37	10	95660593	95660593	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134658.1	+1	validated	p.Y148*	1.000	295	0%	214	24.8%	3	66.6%	-	-	-	HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE
SLC35G1	159371	genome.wustl.edu	37	10	95660892	95660892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134658.1	+1	validated	p.S248Y	1.000	300	0%	243	26.3%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_DUF6
CYP2C9	1559	genome.wustl.edu	37	10	96698519	96698519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000771.3	+1	reviewed	p.G27E	0.003	363	0%	90	20%	0	-	possibly_damaging(0.627)	tolerated(0.06)	deleterious(0.541)	NULL
C10orf129	142827	genome.wustl.edu	37	10	96985146	96985146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207321.2	+1	validated	p.M434V	0.012	383	0%	194	14.4%	0	-	benign(0)	tolerated(0.6)	neutral(0.004)	superfamily_Acetyl-CoA synthetase-like
C10orf129	142827	genome.wustl.edu	37	10	96988522	96988522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207321.2	+1	validated	p.A475V	0.016	749	0%	522	12.3%	0	-	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
SORBS1	10580	genome.wustl.edu	37	10	97106200	97106200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001034954.1	-1	validated	p.A798T	1.000	339	0.3%	216	25%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
CCNJ	54619	genome.wustl.edu	37	10	97817914	97817914	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134375.1	+1	validated	p.V356	0.995	521	0%	284	21.8%	11	63.6%	-	-	-	NULL
ZNF518A	9849	genome.wustl.edu	37	10	97917118	97917118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000371192	+1	known	p.V347L	0.201	106	0%	46	15.2%	1	0%	-	-	-	NULL
TLL2	7093	genome.wustl.edu	37	10	98240216	98240216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012465.3	-1	validated	p.A59V	1.000	456	0%	264	23.1%	3	0%	benign(0.001)	tolerated(0.13)	neutral(0.253)	NULL
PIK3AP1	118788	genome.wustl.edu	37	10	98380159	98380159	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152309.2	-1	validated	p.E631*	1.000	114	0%	32	25%	6	0%	-	-	-	NULL
LCOR	84458	genome.wustl.edu	37	10	98715360	98715360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032440.3	+1	validated	p.S328L	1.000	120	0.8%	80	21.2%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
SLIT1	6585	genome.wustl.edu	37	10	98770819	98770819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003061.2	-1	validated	p.R1091H	1.000	97	0%	104	18.3%	0	-	benign(0.002)	tolerated(0.12)	neutral(0.261)	HMMSmart_SM00179,HMMSmart_SM00274,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
ARHGAP19	84986	genome.wustl.edu	37	10	99019330	99019330	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032900.4	-1	validated	p.R223	0.999	1203	0.1%	512	22.1%	0	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
RRP12	23223	genome.wustl.edu	37	10	99126306	99126306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015179.3	-1	validated	p.E1096D	0.999	159	0%	150	18.7%	62	61.2%	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
RRP12	23223	genome.wustl.edu	37	10	99130489	99130489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015179.3	-1	validated	p.T856N	0.743	166	0%	142	21.1%	41	46.3%	benign(0.308)	tolerated(0.39)	neutral(0.112)	superfamily_ARM repeat
ZFYVE27	118813	genome.wustl.edu	37	10	99512797	99512797	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002261.3	+1	reviewed	p.E305	1.000	31	0%	32	18.8%	19	21%	-	-	-	superfamily_FYVE_PHD_ZnF
LOC100289281	100289281	genome.wustl.edu	37	10	99527391	99527391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343028.1	+1	model	p.M1I	1.000	58	0%	62	27.4%	0	-	-	-	-	NULL
CRTAC1	55118	genome.wustl.edu	37	10	99640121	99640121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000298819	-1	known	p.S554L	0.358	122	0%	71	18.3%	1	0%	benign(0.104)	-	-	NULL
LOXL4	84171	genome.wustl.edu	37	10	100010824	100010824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032211.6	-1	reviewed	p.T733I	1.000	87	0%	60	25%	5	40%	benign(0)	tolerated(1)	-	HMMPfam_Lysyl_oxidase
PYROXD2	84795	genome.wustl.edu	37	10	100150791	100150791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032709.2	-1	validated	p.R371W	1.000	133	0%	79	30.4%	8	37.5%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	superfamily_SSF51905
HPS1	3257	genome.wustl.edu	37	10	100184109	100184109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000195.2	-1	reviewed	p.A453V	1.000	80	0%	85	20%	56	41%	benign(0.003)	tolerated(0.12)	neutral(0.261)	NULL
HPS1	3257	genome.wustl.edu	37	10	100190387	100190387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000195.2	-1	reviewed	p.L237I	1.000	126	0%	101	18.8%	74	32.4%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	NULL
GOT1	2805	genome.wustl.edu	37	10	101163590	101163590	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002079.2	-1	reviewed	p.G228	1.000	174	0%	55	32.7%	32	25%	-	-	-	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
GOT1	2805	genome.wustl.edu	37	10	101165531	101165531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002079.2	-1	reviewed	p.Q208H	1.000	151	0%	66	36.4%	30	13.3%	benign(0.247)	deleterious(0)	deleterious(0.470)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
SLC25A28	81894	genome.wustl.edu	37	10	101370626	101370626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031212.3	-1	validated	p.E359K	1.000	222	0%	148	18.9%	126	37.3%	benign(0.022)	tolerated(0.05)	neutral(0.346)	NULL
SLC25A28	81894	genome.wustl.edu	37	10	101370908	101370908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031212.3	-1	validated	p.V265I	0.999	236	0%	157	22.9%	47	29.7%	benign(0.039)	tolerated(0.62)	neutral(0.006)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
SLC25A28	81894	genome.wustl.edu	37	10	101370931	101370931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031212.3	-1	validated	p.R257I	1.000	243	0%	168	13.7%	57	22.8%	probably_damaging(0.988)	deleterious(0.03)	deleterious(0.802)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
SLC25A28	81894	genome.wustl.edu	37	10	101370995	101370995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031212.3	-1	validated	p.V236I	1.000	187	0%	111	25.2%	75	33.3%	benign(0.009)	tolerated(1)	neutral(0.001)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
ABCC2	1244	genome.wustl.edu	37	10	101567276	101567276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000392.3	+1	reviewed	p.L556M	0.928	233	0%	78	24.4%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC2	1244	genome.wustl.edu	37	10	101579027	101579027	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000392.3	+1	reviewed	e19+1	1.000	176	0%	91	17.6%	0	-	-	-	-	-
ABCC2	1244	genome.wustl.edu	37	10	101590174	101590174	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000392.3	+1	reviewed	p.R911*	0.788	216	0%	173	22%	0	-	-	-	-	NULL
ABCC2	1244	genome.wustl.edu	37	10	101590500	101590500	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000392.3	+1	reviewed	p.K925	0.852	170	0%	127	13.4%	0	-	-	-	-	NULL
DNMBP	23268	genome.wustl.edu	37	10	101639896	101639896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015221.2	-1	validated	p.S1407Y	0.001	439	0.2%	264	22.7%	10	50%	possibly_damaging(0.502)	deleterious(0.01)	deleterious(0.573)	NULL
DNMBP	23268	genome.wustl.edu	37	10	101640022	101640022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015221.2	-1	validated	p.S1365Y	1.000	90	0%	60	26.7%	12	25%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
DNMBP	23268	genome.wustl.edu	37	10	101646143	101646143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015221.2	-1	validated	p.L1178I	1.000	162	0%	165	23%	6	66.6%	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	HMMPfam_BAR,HMMSmart_SM00721
CPN1	1369	genome.wustl.edu	37	10	101823460	101823460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001308.2	-1	reviewed	p.A261V	1.000	210	0%	127	26%	0	-	probably_damaging(1)	tolerated(0.36)	deleterious(0.520)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
ERLIN1	10613	genome.wustl.edu	37	10	101945361	101945361	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001100626.1	-1	validated	p.V8G	0.998	109	0%	182	25.3%	12	33.3%	possibly_damaging(0.903)	deleterious(0.01)	deleterious(0.764)	NULL
CWF19L1	55280	genome.wustl.edu	37	10	101996624	101996624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018294.4	-1	validated	p.H453Y	1.000	474	0%	372	21.2%	33	33.3%	benign(0.025)	tolerated(0.16)	neutral(0.060)	HMMPfam_CwfJ_C_2
CWF19L1	55280	genome.wustl.edu	37	10	102020758	102020758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018294.4	-1	validated	p.A51D	1.000	227	0%	140	19.3%	8	62.5%	benign(0.019)	deleterious(0.03)	neutral(0.365)	NULL
PKD2L1	9033	genome.wustl.edu	37	10	102052761	102052761	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016112.2	-1	reviewed	p.V608	0.970	283	0%	238	24.8%	0	-	-	-	-	NULL
SCD	6319	genome.wustl.edu	37	10	102112122	102112122	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005063.4	+1	validated	e3-1	0.998	212	0%	176	19.3%	1	100%	-	-	-	-
SEC31B	25956	genome.wustl.edu	37	10	102257899	102257899	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015490.3	-1	reviewed	p.L584	1.000	334	0%	171	18.7%	3	33.3%	-	-	-	NULL
SEC31B	25956	genome.wustl.edu	37	10	102269110	102269110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015490.3	-1	reviewed	p.T121M	0.821	180	0%	114	21.1%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
HIF1AN	55662	genome.wustl.edu	37	10	102300403	102300403	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017902.2	+1	validated	p.Q147	1.000	330	0%	266	22.6%	16	62.5%	-	-	-	HMMSmart_JmjC,superfamily_SSF51197
FAM178A	55719	genome.wustl.edu	37	10	102690807	102690807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136123.1	+1	validated	p.P803H	1.000	646	0%	806	12.8%	4	25%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
FAM178A	55719	genome.wustl.edu	37	10	102706864	102706864	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136123.1	+1	validated	p.Q1001	1.000	183	0%	154	25.3%	1	0%	-	-	-	NULL
MRPL43	84545	genome.wustl.edu	37	10	102746553	102746553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176794.1	-1	reviewed	p.F140L	0.000	209	0%	186	23.1%	229	38.8%	benign(0)	tolerated(0.64)	neutral(0.003)	NULL
C10orf2	56652	genome.wustl.edu	37	10	102748320	102748320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021830.4	+1	reviewed	p.A118V	0.998	71	0%	110	20.9%	9	44.4%	benign(0.001)	tolerated(0.53)	neutral(0.007)	NULL
C10orf2	56652	genome.wustl.edu	37	10	102748706	102748706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021830.4	+1	reviewed	p.L247M	1.000	93	0%	114	12.3%	8	37.5%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
POLL	27343	genome.wustl.edu	37	10	103339346	103339346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013274.3	-1	reviewed	p.A531V	1.000	87	0%	87	16.1%	59	27.1%	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	HMMSmart_POLXc,superfamily_SSF81301
POLL	27343	genome.wustl.edu	37	10	103345794	103345794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013274.3	-1	reviewed	p.G79C	0.715	58	0%	60	23.3%	14	35.7%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	superfamily_BRCT
DPCD	25911	genome.wustl.edu	37	10	103360506	103360506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015448.1	+1	provisional	p.R53C	1.000	61	0%	42	14.3%	80	33.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FBXW4	6468	genome.wustl.edu	37	10	103427724	103427724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022039.3	-1	reviewed	p.A230V	1.000	129	0%	55	23.6%	61	21.3%	benign(0.098)	tolerated(0.1)	neutral(0.294)	superfamily_WD40_like
FGF8	2253	genome.wustl.edu	37	10	103534668	103534668	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033163.2	-1	reviewed	p.V53G	1.000	117	0%	170	24.7%	0	-	probably_damaging(0.977)	tolerated(0.13)	deleterious(0.671)	NULL
FGF8	2253	genome.wustl.edu	37	10	103534951	103534951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033163.2	-1	reviewed	p.A31V	0.561	7	0.000	10	0.400	0	-	benign(0.201)	tolerated(0.18)	neutral(0.075)	NULL
NPM3	10360	genome.wustl.edu	37	10	103542289	103542289	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006993.2	-1	reviewed	p.D90	0.998	314	0%	348	26.4%	238	46.2%	-	-	-	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin
MGEA5	10724	genome.wustl.edu	37	10	103546339	103546339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012215.3	-1	validated	p.R874W	1.000	154	0%	184	13%	37	13.5%	probably_damaging(0.994)	tolerated(0.14)	deleterious(0.702)	superfamily_Acyl-CoA N-acyltransferases (Nat)
LDB1	8861	genome.wustl.edu	37	10	103867901	103867901	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113407.1	-1	validated	p.P395	0.989	433	0%	349	24.1%	89	44.9%	-	-	-	HMMPfam_LIM_bind
GBF1	8729	genome.wustl.edu	37	10	104135318	104135318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004193.1	+1	provisional	p.A1287V	1.000	75	0%	59	25.4%	28	42.8%	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
GBF1	8729	genome.wustl.edu	37	10	104136897	104136897	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004193.1	+1	provisional	p.D1497	1.000	72	0%	53	15.1%	21	47.6%	-	-	-	NULL
GBF1	8729	genome.wustl.edu	37	10	104139316	104139316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004193.1	+1	provisional	p.R1561W	0.988	159	0%	105	25.7%	60	61.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NFKB2	4791	genome.wustl.edu	37	10	104157155	104157155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077494.1	+1	validated	p.Q164H	0.997	96	0%	115	22.6%	69	37.6%	possibly_damaging(0.9)	tolerated(0.13)	deleterious(0.609)	superfamily_p53-like transcription factors,HMMPfam_RHD
PSD	5662	genome.wustl.edu	37	10	104164757	104164757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002779.3	-1	provisional	p.S818I	1.000	68	0%	101	28.7%	14	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PSD	5662	genome.wustl.edu	37	10	104170824	104170824	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002779.3	-1	provisional	p.L664	0.999	130	0%	164	19.5%	1	0%	-	-	-	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
CUEDC2	79004	genome.wustl.edu	37	10	104183283	104183283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024040.2	-1	validated	p.T255I	1.000	374	0%	329	21.3%	270	47%	possibly_damaging(0.937)	tolerated(0.65)	neutral(0.386)	NULL
CUEDC2	79004	genome.wustl.edu	37	10	104184459	104184459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024040.2	-1	validated	p.E55D	0.996	79	0%	81	18.5%	139	47.4%	possibly_damaging(0.527)	tolerated(0.19)	neutral(0.227)	NULL
SFXN2	118980	genome.wustl.edu	37	10	104492639	104492639	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178858.4	+1	validated	p.R249	0.995	354	0%	260	20.8%	4	50%	-	-	-	HMMPfam_Mtc
CNNM2	54805	genome.wustl.edu	37	10	104679767	104679767	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017649.3	+1	validated	p.P510	0.992	472	0%	450	11.6%	8	12.5%	-	-	-	HMMPfam_CBS
CNNM2	54805	genome.wustl.edu	37	10	104836891	104836891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017649.3	+1	validated	p.T861M	0.956	69	0%	93	14%	9	44.4%	benign(0.14)	deleterious(0.02)	neutral(0.395)	NULL
NT5C2	22978	genome.wustl.edu	37	10	104859732	104859732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134373.1	-1	validated	p.R195Q	1.000	212	0%	153	24.8%	16	25%	benign(0.193)	tolerated(0.15)	neutral(0.259)	HMMPfam_5_nucleotid
NT5C2	22978	genome.wustl.edu	37	10	104934693	104934693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134373.1	-1	validated	p.R8Q	1.000	470	0%	211	25.1%	16	62.5%	benign(0.253)	tolerated(0.06)	neutral(0.349)	NULL
TAF5	6877	genome.wustl.edu	37	10	105145247	105145247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006951.3	+1	reviewed	p.R610Q	1.000	191	0%	105	18.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
PDCD11	22984	genome.wustl.edu	37	10	105179315	105179315	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014976.1	+1	validated	p.A709	0.042	275	0%	184	29.3%	9	33.3%	-	-	-	NULL
PDCD11	22984	genome.wustl.edu	37	10	105183331	105183331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014976.1	+1	validated	p.K893N	0.942	258	0%	155	10.3%	18	16.6%	possibly_damaging(0.676)	tolerated(0.5)	neutral(0.251)	HMMSmart_S1
PDCD11	22984	genome.wustl.edu	37	10	105185001	105185001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014976.1	+1	validated	p.K1008N	0.001	256	0%	133	20.3%	20	35%	benign(0.003)	tolerated(0.06)	neutral(0.323)	NULL
CALHM3	119395	genome.wustl.edu	37	10	105233422	105233422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001129742.1	-1	validated	p.A195T	1.000	17	0%	20	25%	0	-	possibly_damaging(0.796)	tolerated(0.06)	deleterious(0.621)	NULL
SH3PXD2A	9644	genome.wustl.edu	37	10	105484058	105484058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014631.2	-1	validated	p.A123V	1.000	98	0%	49	24.5%	1	0%	possibly_damaging(0.856)	deleterious(0.02)	deleterious(0.714)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
COL17A1	1308	genome.wustl.edu	37	10	105793988	105793988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000494.3	-1	reviewed	p.G1291C	0.000	31	0%	20	25%	0	-	unknown(0)	tolerated(0.05)	-	NULL
COL17A1	1308	genome.wustl.edu	37	10	105815561	105815561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000494.3	-1	reviewed	p.L556I	0.080	230	0%	232	10.8%	0	-	unknown(0)	deleterious(0.05)	-	NULL
COL17A1	1308	genome.wustl.edu	37	10	105819433	105819433	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000494.3	-1	reviewed	p.A395	0.763	443	0%	474	21.1%	0	-	-	-	-	NULL
WDR96	80217	genome.wustl.edu	37	10	105985275	105985275	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025145.5	-1	provisional	p.Y120	0.994	248	0%	193	20.7%	4	50%	-	-	-	superfamily_WD40 repeat-like
ITPRIP	85450	genome.wustl.edu	37	10	106074458	106074458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033397.2	-1	provisional	p.A451V	0.109	29	3.4%	21	19%	5	40%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
ITPRIP	85450	genome.wustl.edu	37	10	106075104	106075104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033397.2	-1	provisional	p.D236Y	1.000	34	0%	17	35.3%	4	50%	possibly_damaging(0.924)	deleterious(0.05)	deleterious(0.718)	NULL
ITPRIP	85450	genome.wustl.edu	37	10	106075746	106075746	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033397.2	-1	provisional	p.L22	1.000	42	0%	66	27.3%	4	25%	-	-	-	NULL
CCDC147	159686	genome.wustl.edu	37	10	106118174	106118174	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008723.1	+1	validated	p.E29*	0.997	149	0%	135	20%	0	-	-	-	-	NULL
CCDC147	159686	genome.wustl.edu	37	10	106139857	106139857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008723.1	+1	validated	p.R415M	1.000	222	0%	64	12.5%	0	-	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	NULL
CCDC147	159686	genome.wustl.edu	37	10	106152000	106152000	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008723.1	+1	validated	p.N459H	0.967	204	0%	79	17.7%	0	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	NULL
CCDC147	159686	genome.wustl.edu	37	10	106160512	106160512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008723.1	+1	validated	p.K630N	1.000	307	0.3%	99	29.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SORCS3	22986	genome.wustl.edu	37	10	107015516	107015516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014978.1	+1	reviewed	p.K1098N	1.000	373	0.3%	272	22.4%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
SORCS1	114815	genome.wustl.edu	37	10	108469002	108469002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013031.1	-1	reviewed	p.Q374H	1.000	279	0%	90	15.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_VPS10,superfamily_SSF110296
SORCS1	114815	genome.wustl.edu	37	10	108536435	108536435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013031.1	-1	reviewed	p.D248N	1.000	363	0%	104	25%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMSmart_VPS10,superfamily_SSF110296
ADD3	120	genome.wustl.edu	37	10	111876169	111876169	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016824.3	+1	reviewed	e3+1	1.000	372	0%	150	20.7%	0	-	-	-	-	-
SMNDC1	10285	genome.wustl.edu	37	10	112063322	112063322	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005871.3	-1	reviewed	p.Q8	1.000	294	0%	454	21.6%	5	60%	-	-	-	NULL
PDCD4	27250	genome.wustl.edu	37	10	112641153	112641153	+	Missense_Mutation	SNP	G	G	A	rs184353935	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014456.3	+1	reviewed	p.R69Q	1.000	204	0%	136	15.4%	29	6.8%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
PDCD4	27250	genome.wustl.edu	37	10	112653867	112653867	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014456.3	+1	reviewed	p.E337*	1.000	287	0%	132	23.5%	49	6.1%	-	-	-	HMMPfam_MA3,HMMSmart_SM00544
ADRA2A	150	genome.wustl.edu	37	10	112838030	112838030	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000681.3	+1	reviewed	p.S92	0.066	62	0%	91	27.5%	4	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
VTI1A	143187	genome.wustl.edu	37	10	114428033	114428033	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145206.2	+1	validated	p.R162*	1.000	510	0%	284	12.7%	13	0%	-	-	-	HMMSmart_t_SNARE,HMMPfam_V-SNARE
HABP2	3026	genome.wustl.edu	37	10	115334054	115334054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004132.3	+1	reviewed	p.T38I	0.973	278	0%	101	15.8%	4	25%	benign(0.052)	deleterious(0)	neutral(0.448)	NULL
HABP2	3026	genome.wustl.edu	37	10	115337003	115337003	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004132.3	+1	reviewed	p.Y142	0.996	224	0%	124	22.6%	2	100%	unknown(0)	-	-	HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
HABP2	3026	genome.wustl.edu	37	10	115341667	115341667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004132.3	+1	reviewed	p.P291S	0.000	169	0%	102	13.7%	3	33.3%	benign(0.008)	deleterious(0.04)	neutral(0.349)	superfamily_Kringle-like
NRAP	4892	genome.wustl.edu	37	10	115381650	115381650	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198060.2	-1	validated	p.K916M	1.000	183	0%	71	21.1%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Nebulin,HMMSmart_SM00227
NRAP	4892	genome.wustl.edu	37	10	115385888	115385888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198060.2	-1	validated	p.R721M	0.251	176	0%	62	17.7%	0	-	possibly_damaging(0.803)	deleterious(0.05)	deleterious(0.648)	HMMPfam_Nebulin,HMMSmart_SM00227
CASP7	840	genome.wustl.edu	37	10	115489170	115489170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033340.2	+1	reviewed	p.S250Y	1.000	200	0%	62	32.3%	32	28.1%	unknown(0)	-	-	HMMSmart_SM00115
C10orf81	79949	genome.wustl.edu	37	10	115526207	115526207	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000369310	+1	known	p.C16	1.000	302	0%	115	13%	2	0%	-	-	-	HMMSmart_SM00233,superfamily_PH domain-like
C10orf81	79949	genome.wustl.edu	37	10	115529545	115529545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000369310	+1	known	p.E140D	0.160	203	0%	96	18.8%	2	0%	probably_damaging(0.98)	tolerated(0.31)	neutral(0.451)	NULL
DCLRE1A	9937	genome.wustl.edu	37	10	115609302	115609302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014881.3	-1	provisional	p.L521S	0.003	227	0%	292	25.3%	10	30%	benign(0.037)	tolerated(0.31)	neutral(0.029)	NULL
NHLRC2	374354	genome.wustl.edu	37	10	115618341	115618341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198514.2	+1	provisional	p.G78V	1.000	379	0%	440	21.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thioredoxin-like
NHLRC2	374354	genome.wustl.edu	37	10	115639384	115639384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198514.2	+1	provisional	p.S280Y	1.000	82	0%	39	30.8%	3	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_NHL,superfamily_NHL repeat
ADRB1	153	genome.wustl.edu	37	10	115804638	115804638	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000684.2	+1	reviewed	p.R249	1.000	12	0%	19	42.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C10orf118	55088	genome.wustl.edu	37	10	115895663	115895663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018017.2	-1	validated	p.T500I	1.000	812	0%	350	20.3%	2	50%	probably_damaging(0.998)	tolerated(0.26)	deleterious(0.508)	NULL
C10orf118	55088	genome.wustl.edu	37	10	115922556	115922556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018017.2	-1	validated	p.A158T	0.501	279	0%	237	11.8%	2	0%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
TDRD1	56165	genome.wustl.edu	37	10	115971782	115971782	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198795.1	+1	reviewed	p.K606	0.995	271	0%	66	24.2%	0	-	-	-	-	HMMPfam_TUDOR
TDRD1	56165	genome.wustl.edu	37	10	115973331	115973331	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198795.1	+1	reviewed	p.D686	0.000	208	0%	73	20.5%	0	-	-	-	-	NULL
TDRD1	56165	genome.wustl.edu	37	10	115980525	115980525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198795.1	+1	reviewed	p.A898V	0.000	286	0%	78	21.8%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
TDRD1	56165	genome.wustl.edu	37	10	115987003	115987003	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198795.1	+1	reviewed	p.V1116	0.979	311	0.3%	154	11%	0	-	-	-	-	NULL
VWA2	340706	genome.wustl.edu	37	10	116044706	116044706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198496.1	+1	provisional	p.A325V	1.000	91	0%	107	24.3%	0	-	possibly_damaging(0.929)	deleterious(0.02)	deleterious(0.759)	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
AFAP1L2	84632	genome.wustl.edu	37	10	116073750	116073750	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001936.1	-1	validated	p.S224	0.915	253	0%	237	19%	34	41.1%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ABLIM1	3983	genome.wustl.edu	37	10	116335207	116335207	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002313.5	-1	reviewed	p.Y177	1.000	124	0%	55	14.5%	2	50%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
FAM160B1	57700	genome.wustl.edu	37	10	116590658	116590658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020940.3	+1	validated	p.K31N	1.000	552	0%	482	20.7%	2	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
ATRNL1	26033	genome.wustl.edu	37	10	117185792	117185792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207303.2	+1	validated	p.P1101L	1.000	627	0.2%	457	12.9%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin
C10orf96	374355	genome.wustl.edu	37	10	118117392	118117392	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198515.2	+1	validated	p.L199	0.633	292	0%	102	12.7%	0	-	-	-	-	NULL
PNLIP	5406	genome.wustl.edu	37	10	118306806	118306806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000936.2	+1	reviewed	p.G16V	0.991	176	0%	110	11.8%	0	-	possibly_damaging(0.757)	deleterious(0)	deleterious(0.724)	NULL
HSPA12A	259217	genome.wustl.edu	37	10	118441358	118441358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025015.2	-1	validated	p.S289N	1.000	283	0%	191	24.1%	1	0%	benign(0.106)	tolerated(0.18)	neutral(0.064)	NULL
KIAA1598	57698	genome.wustl.edu	37	10	118713641	118713641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127211.1	-1	validated	p.E116D	1.000	351	0%	137	16.8%	9	33.3%	probably_damaging(0.994)	tolerated(0.49)	neutral(0.463)	NULL
VAX1	11023	genome.wustl.edu	37	10	118891804	118891804	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199131.2	-1	reviewed	p.K159	0.000	200	0%	324	22.2%	0	-	-	-	-	HMMSmart_SM00389
KCNK18	338567	genome.wustl.edu	37	10	118957092	118957092	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181840.1	+1	provisional	p.V31	1.000	169	0%	99	26.3%	0	-	-	-	-	superfamily_SSF81324
SLC18A2	6571	genome.wustl.edu	37	10	119029887	119029887	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003054.4	+1	reviewed	p.W451*	1.000	760	0%	270	18.1%	2	0%	-	-	-	superfamily_MFS general substrate transporter
PDZD8	118987	genome.wustl.edu	37	10	119049712	119049712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173791.3	-1	provisional	p.L416F	1.000	111	0%	21	19%	15	33.3%	possibly_damaging(0.82)	deleterious(0.01)	deleterious(0.716)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
RAB11FIP2	22841	genome.wustl.edu	37	10	119798620	119798620	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014904.2	-1	validated	p.N376	1.000	663	0%	579	21.6%	0	-	-	-	-	NULL
LOC100287264	100287264	genome.wustl.edu	37	10	120354424	120354424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343034.1	+1	model	p.G225S	1.000	28	0%	13	30.8%	0	-	-	-	-	NULL
EIF3A	8661	genome.wustl.edu	37	10	120802268	120802268	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003750.2	-1	validated	p.E922*	1.000	100	0%	102	24.5%	73	0%	-	-	-	NULL
FAM45A	404636	genome.wustl.edu	37	10	120889095	120889095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207009.2	+1	validated	p.L255M	1.000	901	0%	347	25.6%	12	41.6%	probably_damaging(0.995)	tolerated(0.11)	deleterious(0.729)	NULL
TIAL1	7073	genome.wustl.edu	37	10	121337031	121337031	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033925.1	-1	reviewed	p.Q240	1.000	325	0%	132	17.4%	49	48.9%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
TIAL1	7073	genome.wustl.edu	37	10	121338347	121338347	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033925.1	-1	reviewed	e7-1	1.000	262	0%	92	17.4%	0	-	-	-	-	-
INPP5F	22876	genome.wustl.edu	37	10	121569695	121569695	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014937.2	+1	reviewed	p.N551	1.000	390	0%	252	12.3%	1	0%	-	-	-	NULL
SEC23IP	11196	genome.wustl.edu	37	10	121677347	121677347	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007190.2	+1	reviewed	e9-1	1.000	62	0%	26	38.5%	0	-	-	-	-	-
WDR11	55717	genome.wustl.edu	37	10	122633379	122633379	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018117.11	+1	reviewed	p.Y500	1.000	162	0%	102	19.6%	17	23.5%	-	-	-	superfamily_WD40_like
TACC2	10579	genome.wustl.edu	37	10	123842457	123842457	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206862.2	+1	reviewed	p.G148*	0.007	28	0%	27	14.8%	0	-	-	-	-	NULL
TACC2	10579	genome.wustl.edu	37	10	123843456	123843456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206862.2	+1	reviewed	p.H481Y	0.000	167	0%	76	21.1%	1	0%	benign(0.202)	tolerated(0.06)	neutral(0.342)	NULL
TACC2	10579	genome.wustl.edu	37	10	123843513	123843513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206862.2	+1	reviewed	p.H500Y	0.000	244	0%	147	21.1%	0	-	benign(0.003)	tolerated(0.1)	neutral(0.286)	NULL
TACC2	10579	genome.wustl.edu	37	10	123845667	123845667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206862.2	+1	reviewed	p.D1218Y	0.000	61	0%	53	18.9%	0	-	possibly_damaging(0.861)	deleterious(0.02)	deleterious(0.716)	NULL
TACC2	10579	genome.wustl.edu	37	10	123846428	123846428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206862.2	+1	reviewed	p.Q1471H	0.000	63	0%	35	14.3%	2	100%	possibly_damaging(0.745)	deleterious(0)	deleterious(0.718)	NULL
TACC2	10579	genome.wustl.edu	37	10	123846553	123846553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206862.2	+1	reviewed	p.G1513V	0.000	63	0%	41	14.6%	2	100%	benign(0.328)	tolerated(0.11)	neutral(0.374)	NULL
TACC2	10579	genome.wustl.edu	37	10	123848153	123848153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000515273	+1	known	p.D1874N	0.000	167	0%	100	23%	0	-	unknown(0)	-	-	NULL
TACC2	10579	genome.wustl.edu	37	10	123987479	123987479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206862.2	+1	reviewed	p.L2618M	1.000	105	0%	62	9.7%	15	26.6%	probably_damaging(0.97)	tolerated(0.11)	deleterious(0.684)	NULL
PLEKHA1	59338	genome.wustl.edu	37	10	124166101	124166101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001974.1	+1	validated	p.A85V	1.000	225	0%	90	26.7%	13	23%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
PLEKHA1	59338	genome.wustl.edu	37	10	124172444	124172444	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001974.1	+1	validated	p.K117	1.000	209	0%	63	23.8%	10	50%	-	-	-	superfamily_SSF50729
DMBT1	1755	genome.wustl.edu	37	10	124345681	124345681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007329.2	+1	reviewed	p.S522I	0.011	426	0%	189	17.5%	0	-	possibly_damaging(0.918)	tolerated(0.2)	neutral(0.417)	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
DMBT1	1755	genome.wustl.edu	37	10	124380767	124380767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007329.2	+1	reviewed	p.G1698C	0.997	244	0%	92	20.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
C10orf120	399814	genome.wustl.edu	37	10	124457758	124457758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010912.1	-1	predicted	p.H167Y	0.869	341	0%	344	22.4%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CUZD1	50624	genome.wustl.edu	37	10	124596388	124596388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022034.4	-1	provisional	p.S259F	1.000	208	0%	84	14.3%	1	0%	benign(0.045)	tolerated(0.74)	neutral(0.004)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
IKZF5	64376	genome.wustl.edu	37	10	124753469	124753469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022466.5	-1	provisional	p.L363M	1.000	206	0%	158	18.4%	8	50%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
ACADSB	36	genome.wustl.edu	37	10	124800183	124800183	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001609.3	+1	reviewed	p.E169*	0.996	223	0%	96	18.8%	2	0%	-	-	-	HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like
CPXM2	119587	genome.wustl.edu	37	10	125539749	125539749	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198148.2	-1	validated	p.R304	1.000	617	0%	260	14.6%	6	0%	-	-	-	NULL
CPXM2	119587	genome.wustl.edu	37	10	125650996	125650996	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198148.2	-1	validated	p.P60	0.001	16	0%	20	30%	4	50%	-	-	-	NULL
CHST15	51363	genome.wustl.edu	37	10	125771886	125771886	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015892.2	-1	validated	p.K486	0.172	285	0%	214	22.9%	9	55.5%	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
LHPP	64077	genome.wustl.edu	37	10	126205791	126205791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022126.3	+1	validated	p.A223T	1.000	131	0%	105	18.1%	28	42.8%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_Hydrolase,superfamily_SSF56784
ZRANB1	54764	genome.wustl.edu	37	10	126631521	126631521	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017580.2	+1	validated	p.W153*	1.000	331	0%	148	23%	11	45.4%	-	-	-	HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,superfamily_SSF90209
ZRANB1	54764	genome.wustl.edu	37	10	126660593	126660593	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017580.2	+1	validated	p.Q354	1.000	218	0%	54	11.1%	14	21.4%	-	-	-	NULL
ZRANB1	54764	genome.wustl.edu	37	10	126662268	126662268	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017580.2	+1	validated	p.D404A	1.000	424	0%	139	11.5%	17	17.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CTBP2	1488	genome.wustl.edu	37	10	126683158	126683158	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022802.2	-1	reviewed	p.S760	1.000	218	0%	139	21.6%	80	43.7%	-	-	-	HMMPfam_2-Hacid_dh,HMMPfam_2-Hacid_dh_C,superfamily_NAD(P)-bd
C10orf137	26098	genome.wustl.edu	37	10	127434402	127434402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015608.2	+1	validated	p.T872M	0.986	329	0%	117	30.8%	5	40%	benign(0.016)	tolerated(0.6)	neutral(0.005)	NULL
C10orf137	26098	genome.wustl.edu	37	10	127436518	127436518	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015608.2	+1	validated	p.Q986	1.000	189	0%	58	29.3%	6	33.3%	-	-	-	NULL
MMP21	118856	genome.wustl.edu	37	10	127458926	127458926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_147191.1	-1	reviewed	p.R405I	0.949	554	0%	564	21.3%	0	-	benign(0.013)	tolerated(0.08)	neutral(0.300)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
UROS	7390	genome.wustl.edu	37	10	127486632	127486632	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000375.2	-1	reviewed	e6+2	0.816	448	0%	251	18.7%	0	-	-	-	-	-
ADAM12	8038	genome.wustl.edu	37	10	127797212	127797212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003474.4	-1	reviewed	p.L234M	0.999	680	0.1%	245	13.1%	0	-	benign(0.009)	tolerated(0.24)	neutral(0.038)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
C10orf90	118611	genome.wustl.edu	37	10	128193535	128193535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004298.2	-1	validated	p.Q78H	0.260	279	0%	297	25.3%	0	-	possibly_damaging(0.815)	deleterious(0.03)	deleterious(0.672)	NULL
DOCK1	1793	genome.wustl.edu	37	10	128780220	128780220	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000398025	+1	known	p.A70	0.005	667	0%	333	19.2%	1	100%	-	-	-	superfamily_SH3
DOCK1	1793	genome.wustl.edu	37	10	128829958	128829958	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000398025	+1	known	p.L536	1.000	201	0%	158	31%	5	60%	-	-	-	NULL
DOCK1	1793	genome.wustl.edu	37	10	129183158	129183158	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000398025	+1	known	p.Y1349*	1.000	205	0%	128	16.4%	10	0%	-	-	-	NULL
MKI67	4288	genome.wustl.edu	37	10	129901889	129901889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002417.4	-1	reviewed	p.A2739S	0.000	326	0%	152	20.4%	33	57.5%	benign(0.009)	tolerated(0.33)	neutral(0.025)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129904023	129904023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002417.4	-1	reviewed	p.Q2027H	0.000	849	0%	333	18.9%	14	35.7%	benign(0.388)	tolerated(0.17)	neutral(0.183)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129904891	129904891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002417.4	-1	reviewed	p.R1738I	0.000	772	0%	399	22.6%	12	33.3%	probably_damaging(0.955)	tolerated(0.09)	deleterious(0.695)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129905532	129905532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002417.4	-1	reviewed	p.F1524L	0.000	955	0.1%	461	19.3%	13	38.4%	benign(0.009)	tolerated(1)	neutral(0.001)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129905847	129905847	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002417.4	-1	reviewed	p.H1419	0.000	868	0%	471	20.8%	9	22.2%	-	-	-	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129906081	129906081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002417.4	-1	reviewed	p.Q1341H	0.000	455	0.2%	255	13.7%	3	0%	probably_damaging(0.983)	deleterious(0.03)	deleterious(0.793)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129913208	129913208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002417.4	-1	reviewed	p.N488K	0.001	129	0%	121	24.8%	0	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	NULL
MKI67	4288	genome.wustl.edu	37	10	129913785	129913785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002417.4	-1	reviewed	p.S296Y	0.009	208	0%	177	27.1%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
EBF3	253738	genome.wustl.edu	37	10	131640380	131640380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005463.1	-1	validated	p.V449F	1.000	192	0%	269	12.6%	0	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
TCERG1L	256536	genome.wustl.edu	37	10	132902588	132902588	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174937.3	-1	validated	p.E475D	0.999	299	0%	316	17.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_FF,HMMSmart_FF,superfamily_FF
TCERG1L	256536	genome.wustl.edu	37	10	132961439	132961439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174937.3	-1	validated	p.S327N	0.000	127	0%	107	16.8%	0	-	benign(0.086)	tolerated(0.09)	neutral(0.303)	NULL
JAKMIP3	282973	genome.wustl.edu	37	10	133930791	133930791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105521.2	+1	provisional	p.L116M	1.000	88	0%	96	26%	0	-	probably_damaging(0.983)	tolerated(0.2)	deleterious(0.478)	NULL
JAKMIP3	282973	genome.wustl.edu	37	10	133955541	133955541	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105521.2	+1	provisional	p.R531*	1.000	51	0%	46	19.6%	0	-	-	-	-	NULL
DPYSL4	10570	genome.wustl.edu	37	10	134013895	134013895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006426.2	+1	validated	p.L283M	1.000	98	0%	104	20.2%	3	0%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
STK32C	282974	genome.wustl.edu	37	10	134022557	134022557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173575.2	-1	reviewed	p.V434M	1.000	311	0%	344	22.4%	10	20%	benign(0.027)	tolerated(0.11)	neutral(0.273)	NULL
PWWP2B	170394	genome.wustl.edu	37	10	134219137	134219137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138499.3	+1	validated	p.A378V	0.020	8	0.000	9	0.444	19	31.5%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
TUBGCP2	10844	genome.wustl.edu	37	10	135094914	135094914	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006659.2	-1	validated	p.V812	0.000	62	0%	76	17.1%	163	36.1%	-	-	-	NULL
TUBGCP2	10844	genome.wustl.edu	37	10	135099064	135099064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006659.2	-1	validated	p.E597D	1.000	47	0%	59	10.2%	129	9.3%	benign(0.378)	tolerated(0.07)	neutral(0.440)	HMMPfam_Spc97_Spc98
TUBGCP2	10844	genome.wustl.edu	37	10	135106072	135106072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006659.2	-1	validated	p.A382V	1.000	134	0.7%	221	16.7%	85	38.8%	benign(0.218)	deleterious(0.03)	neutral(0.386)	HMMPfam_Spc97_Spc98
TUBGCP2	10844	genome.wustl.edu	37	10	135106575	135106575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006659.2	-1	validated	p.A331D	1.000	63	0%	65	15.4%	78	17.9%	benign(0.126)	tolerated(0.05)	neutral(0.356)	HMMPfam_Spc97_Spc98
TUBGCP2	10844	genome.wustl.edu	37	10	135113079	135113079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006659.2	-1	validated	p.K103T	0.956	158	0%	144	18.1%	43	51.1%	benign(0.005)	tolerated(0.09)	neutral(0.296)	NULL
CYP2E1	1571	genome.wustl.edu	37	10	135347316	135347316	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000773.3	+1	reviewed	p.A294	0.000	267	0%	257	22.2%	2	50%	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
LOC100288718	100288718	genome.wustl.edu	37	11	291121	291121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343044.1	-1	model	p.S13I	0.042	32	0%	46	26.1%	9	22.2%	-	-	-	NULL
ATHL1	80162	genome.wustl.edu	37	11	293142	293142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000409479	+1	known	p.H444R	0.000	123	0%	193	26.9%	12	41.6%	possibly_damaging(0.623)	tolerated(0.25)	neutral(0.254)	HMMPfam_Glyco_hydro_65m,superfamily_Six-hairpin glycosidases
B4GALNT4	338707	genome.wustl.edu	37	11	375669	375669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178537.4	+1	validated	p.A294V	0.996	34	0%	33	27.3%	14	7.1%	unknown(0)	tolerated(0.32)	-	NULL
B4GALNT4	338707	genome.wustl.edu	37	11	379966	379966	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178537.4	+1	validated	p.F863	0.968	40	0%	36	16.7%	12	25%	-	-	-	HMMPfam_CHGN,superfamily_SSF53448
B4GALNT4	338707	genome.wustl.edu	37	11	380394	380394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178537.4	+1	validated	p.A940T	1.000	42	0%	30	30%	22	63.6%	possibly_damaging(0.868)	tolerated(0.08)	deleterious(0.637)	HMMPfam_CHGN,superfamily_SSF53448
ANO9	338440	genome.wustl.edu	37	11	433389	433389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012302.2	-1	validated	p.T92I	0.005	79	0%	92	16.3%	15	6.6%	possibly_damaging(0.707)	tolerated(0.2)	neutral(0.304)	NULL
LRRC56	115399	genome.wustl.edu	37	11	540862	540862	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198075.3	+1	validated	e1+1	1.000	43	0%	40	40%	0	-	-	-	-	-
C11orf35	256329	genome.wustl.edu	37	11	557915	557915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173573.2	-1	validated	p.R175H	0.477	18	0%	29	17.2%	11	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RASSF7	8045	genome.wustl.edu	37	11	563288	563288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003475.3	+1	validated	p.R308W	0.198	36	0%	14	28.6%	129	47.2%	unknown(0)	deleterious(0.03)	-	NULL
CEND1	51286	genome.wustl.edu	37	11	788345	788345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016564.3	-1	reviewed	p.L78M	1.000	179	0%	230	19.1%	3	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SLC25A22	79751	genome.wustl.edu	37	11	792882	792882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024698.4	-1	provisional	p.A134T	1.000	44	0%	56	26.8%	25	48%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SLC25A22	79751	genome.wustl.edu	37	11	792924	792924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024698.4	-1	provisional	p.V120M	1.000	39	0%	65	20%	41	26.8%	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
PIDD	55367	genome.wustl.edu	37	11	803290	803290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145886.2	-1	reviewed	p.R198H	0.017	176	0%	159	22.6%	7	28.5%	possibly_damaging(0.829)	tolerated(0.09)	deleterious(0.611)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
EFCAB4A	283229	genome.wustl.edu	37	11	828877	828877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173584.3	+1	validated	p.T64M	0.952	107	0%	130	20%	38	21%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_EF-hand
EFCAB4A	283229	genome.wustl.edu	37	11	828921	828921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173584.3	+1	validated	p.H79N	0.515	67	0%	79	30.4%	34	29.4%	benign(0.007)	tolerated(0.71)	neutral(0.002)	superfamily_EF-hand
EFCAB4A	283229	genome.wustl.edu	37	11	829053	829053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000450828	+1	known	p.C123R	0.000	16	0%	17	23.5%	10	30%	-	-	-	NULL
CHID1	66005	genome.wustl.edu	37	11	902198	902198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142676.1	-1	validated	p.G157W	1.000	178	1.1%	175	23.4%	62	4.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat
MUC6	4588	genome.wustl.edu	37	11	1025364	1025364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005961.2	-1	validated	p.L935M	0.245	24	0%	27	33.3%	0	-	unknown(0)	tolerated(0.17)	-	HMMPfam_VWD,HMMSmart_SM00216
MUC6	4588	genome.wustl.edu	37	11	1029543	1029543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005961.2	-1	validated	p.G363V	0.806	46	0%	67	17.9%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00215
MUC5B	727897	genome.wustl.edu	37	11	1262270	1262270	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002458.1	+1	validated	p.D1390A	0.000	23	0%	28	25%	0	-	benign(0.014)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1265053	1265053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002458.1	+1	validated	p.E2318K	0.000	297	0%	232	23.3%	2	0%	benign(0.115)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1268392	1268392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002458.1	+1	validated	p.A3431S	0.000	808	0%	613	26.3%	0	-	unknown(0)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1268476	1268476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002458.1	+1	validated	p.G3459R	0.000	621	0.2%	437	23.3%	2	0%	unknown(0)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1270234	1270234	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002458.1	+1	validated	p.T4045P	0.040	630	0.2%	438	14.4%	1	0%	unknown(0)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1271343	1271343	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002458.1	+1	validated	p.P4414	0.001	257	0.4%	199	20.6%	4	50%	-	-	-	NULL
BRSK2	9024	genome.wustl.edu	37	11	1466873	1466873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003957.2	+1	validated	p.E350D	1.000	55	0%	42	26.2%	0	-	benign(0.003)	tolerated(0.72)	neutral(0.002)	superfamily_Kinase_like
LOC338651	338651	genome.wustl.edu	37	11	1618799	1618799	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_021489.1	+1	validated	NULL	0.005	42	0%	57	21.1%	0	-	-	-	-	-
KRTAP5-2	440021	genome.wustl.edu	37	11	1619305	1619305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004325.1	-1	validated	p.P59L	0.002	113	0%	94	26.6%	3	66.6%	unknown(0)	tolerated(0.37)	-	PatternScan_MOLYBDOPTERIN_PROK_1
KRTAP5-3	387266	genome.wustl.edu	37	11	1629154	1629154	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012708.2	-1	validated	p.S154	0.929	299	0.3%	245	11.4%	0	-	-	-	-	PatternScan_VWFC_1
ENSG00000244242	0	genome.wustl.edu	37	11	1756533	1756533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000340134	-1	known	p.R222W	1.000	252	0%	135	25.2%	31	32.2%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
LOC100287770	100287770	genome.wustl.edu	37	11	1778625	1778625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343068.1	+1	model	p.H260Y	0.584	143	0%	160	26.9%	1085	29.4%	-	-	-	NULL
LSP1	4046	genome.wustl.edu	37	11	1901341	1901341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002339.2	+1	reviewed	p.E26D	0.486	67	0%	58	25.9%	103	0%	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	NULL
TH	7054	genome.wustl.edu	37	11	2186479	2186479	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199292.2	-1	reviewed	p.D470	0.109	101	0%	100	21%	1	0%	-	-	-	HMMPfam_Biopterin_H,superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains
TH	7054	genome.wustl.edu	37	11	2188139	2188139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199292.2	-1	reviewed	p.E304D	1.000	13	0%	16	37.5%	0	-	possibly_damaging(0.739)	deleterious(0.04)	deleterious(0.619)	HMMPfam_Biopterin_H,superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains
C11orf21	29125	genome.wustl.edu	37	11	2323109	2323109	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_024621.1	-1	inferred	NULL	0.002	109	0%	105	16.2%	1	0%	-	-	-	-
TRPM5	29850	genome.wustl.edu	37	11	2427271	2427271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014555.3	-1	validated	p.R1101H	0.003	91	0%	128	20.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRPM5	29850	genome.wustl.edu	37	11	2439409	2439409	+	Silent	SNP	G	G	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014555.3	-1	validated	p.R298	0.672	58	0%	89	27%	0	-	-	-	-	NULL
KCNQ1	3784	genome.wustl.edu	37	11	2592581	2592581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000218.2	+1	reviewed	p.V211M	1.000	92	0%	156	17.3%	1	0%	possibly_damaging(0.631)	deleterious(0.02)	deleterious(0.604)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SLC22A18	5002	genome.wustl.edu	37	11	2929502	2929502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183233.2	+1	reviewed	p.G62S	0.964	182	0.5%	285	23.5%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
NAP1L4	4676	genome.wustl.edu	37	11	2976986	2976986	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005969.3	-1	reviewed	p.D301	1.000	310	0%	177	19.2%	136	36.7%	-	-	-	HMMPfam_NAP
CARS	833	genome.wustl.edu	37	11	3039932	3039932	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014437.1	-1	reviewed	p.G481	0.845	603	0%	408	20.8%	65	47.6%	-	-	-	HMMPfam_tRNA-synt_1e,superfamily_SSF52374
CARS	833	genome.wustl.edu	37	11	3050289	3050289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014437.1	-1	reviewed	p.R323Q	1.000	184	0.5%	111	22.5%	44	43.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_tRNA-synt_1e,superfamily_SSF52374
OSBPL5	114879	genome.wustl.edu	37	11	3114775	3114775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020896.3	-1	reviewed	p.T643M	0.042	25	0%	28	28.6%	19	31.5%	benign(0.034)	tolerated(0.05)	neutral(0.347)	HMMPfam_Oxysterol_BP
ART5	116969	genome.wustl.edu	37	11	3661391	3661391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001079536.1	-1	reviewed	p.A90T	0.917	46	0%	49	10.2%	0	-	benign(0.012)	tolerated(0.14)	neutral(0.250)	HMMPfam_ART,superfamily_ADP-ribosylation
CHRNA10	57053	genome.wustl.edu	37	11	3687525	3687525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020402.2	-1	provisional	p.L389M	1.000	36	0%	65	12.3%	2	0%	possibly_damaging(0.553)	tolerated(0.13)	neutral(0.441)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
CHRNA10	57053	genome.wustl.edu	37	11	3690550	3690550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020402.2	-1	provisional	p.L80M	1.000	153	0%	173	23.7%	0	-	possibly_damaging(0.945)	deleterious(0.03)	deleterious(0.754)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
NUP98	4928	genome.wustl.edu	37	11	3697755	3697755	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000429801	-1	known	p.S676P	1.000	157	0%	110	20.9%	84	30.9%	-	-	-	NULL
PGAP2	27315	genome.wustl.edu	37	11	3845199	3845199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145439.1	+1	validated	p.L38F	1.000	92	0%	80	25%	50	34%	unknown(0)	-	-	NULL
PGAP2	27315	genome.wustl.edu	37	11	3846314	3846314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014489.2	+1	validated	p.A258V	0.998	475	0%	400	20.5%	56	48.2%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Frag1
OR52B4	143496	genome.wustl.edu	37	11	4388683	4388683	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005161.3	-1	validated	p.V281	0.058	279	0%	48	27.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TRIM21	6737	genome.wustl.edu	37	11	4411369	4411369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003141.3	-1	reviewed	p.R91W	0.000	213	0.5%	132	25%	43	44.1%	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMPfam_zf-B_box,HMMSmart_BBOX,superfamily_SSF57850
OR52K1	390036	genome.wustl.edu	37	11	4510588	4510588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005171.2	+1	validated	p.R153Q	0.013	270	0%	109	25.7%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52M1	119772	genome.wustl.edu	37	11	4566814	4566814	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004137.1	+1	validated	p.L132	0.010	328	0%	127	15%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR52M1	119772	genome.wustl.edu	37	11	4567357	4567357	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004137.1	+1	validated	p.E313*	0.001	385	0.3%	102	25.5%	0	-	-	-	-	NULL
TRIM68	55128	genome.wustl.edu	37	11	4626532	4626532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018073.5	-1	reviewed	p.N68S	0.003	206	0%	193	18.7%	0	-	benign(0.111)	tolerated(0.07)	neutral(0.328)	superfamily_SSF57850
OR51S1	119692	genome.wustl.edu	37	11	4869545	4869545	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004758.1	-1	provisional	p.L298	0.992	372	0%	109	16.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51S1	119692	genome.wustl.edu	37	11	4870223	4870223	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004758.1	-1	provisional	p.F72	0.960	156	0%	49	22.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51A7	119687	genome.wustl.edu	37	11	4929000	4929000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004749.1	+1	provisional	p.S134Y	0.268	194	0%	78	21.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_SSF81321
OR51G2	81282	genome.wustl.edu	37	11	4936522	4936522	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005238.1	-1	provisional	p.A124	0.999	275	0%	62	25.8%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR51G1	79324	genome.wustl.edu	37	11	4945452	4945452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005237.1	-1	provisional	p.V40I	0.004	177	0%	44	20.5%	0	-	possibly_damaging(0.746)	tolerated(0.2)	neutral(0.323)	superfamily_SSF81321
OR51L1	119682	genome.wustl.edu	37	11	5020814	5020814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004755.1	+1	provisional	p.G201E	1.000	592	0%	223	22%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR51L1	119682	genome.wustl.edu	37	11	5020917	5020917	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004755.1	+1	provisional	p.E235	0.525	620	0%	252	20.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR52J3	119679	genome.wustl.edu	37	11	5068135	5068135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001916.2	+1	validated	p.A127V	1.000	335	0%	73	19.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
HBB	3043	genome.wustl.edu	37	11	5247833	5247833	+	Silent	SNP	G	G	A	rs34665886	byCluster	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000518.4	-1	reviewed	p.L97	1.000	215	0%	67	22.4%	4	0%	-	-	-	HMMPfam_Globin,superfamily_Globin-like
OR51B4	79339	genome.wustl.edu	37	11	5322772	5322772	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033179.2	-1	validated	p.N135K	0.049	308	0%	252	11.9%	0	-	benign(0.011)	tolerated(0.06)	neutral(0.323)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51B5	282763	genome.wustl.edu	37	11	5364019	5364019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005567.1	-1	provisional	p.V246I	0.752	235	0%	80	26.3%	0	-	benign(0.364)	tolerated(0.13)	neutral(0.368)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51B6	390058	genome.wustl.edu	37	11	5373443	5373443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004750.1	+1	provisional	p.L236I	1.000	616	0%	238	21.8%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_7tm_1,superfamily_SSF81321
OR51M1	390059	genome.wustl.edu	37	11	5410631	5410631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004756.2	+1	validated	p.M1I	0.001	263	0%	70	37.1%	0	-	benign(0.192)	deleterious(0)	neutral(0.463)	superfamily_Family A G protein-coupled receptor-like
OR51I2	390064	genome.wustl.edu	37	11	5475054	5475054	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004754.2	+1	validated	p.S112	0.000	210	0%	161	11.2%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR51I2	390064	genome.wustl.edu	37	11	5475553	5475553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004754.2	+1	validated	p.V279M	0.000	233	0%	165	17.6%	0	-	possibly_damaging(0.728)	tolerated(0.16)	neutral(0.325)	HMMPfam_7tm_1,superfamily_SSF81321
UBQLN3	50613	genome.wustl.edu	37	11	5529853	5529853	+	Silent	SNP	G	G	A	rs184537471	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017481.2	-1	reviewed	p.G312	0.000	186	0.5%	62	27.4%	0	-	-	-	-	NULL
UBQLN3	50613	genome.wustl.edu	37	11	5530464	5530464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017481.2	-1	reviewed	p.T109A	0.001	137	0%	42	28.6%	0	-	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
UBQLN3	50613	genome.wustl.edu	37	11	5530475	5530475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017481.2	-1	reviewed	p.A105V	0.022	146	0%	48	25%	0	-	benign(0.016)	tolerated(0.08)	neutral(0.300)	NULL
UBQLNL	143630	genome.wustl.edu	37	11	5536566	5536566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145053.4	-1	validated	p.S369I	0.000	782	0%	220	26.8%	1	0%	probably_damaging(0.998)	tolerated(0.35)	deleterious(0.495)	NULL
OR52H1	390067	genome.wustl.edu	37	11	5565933	5565933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005289.1	-1	provisional	p.H274R	0.946	627	0%	229	17%	0	-	benign(0.004)	tolerated(0.37)	neutral(0.019)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52H1	390067	genome.wustl.edu	37	11	5566168	5566168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005289.1	-1	provisional	p.A196T	0.031	180	0%	62	19.4%	0	-	possibly_damaging(0.53)	deleterious(0.03)	deleterious(0.543)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TRIM6-TRIM34	445372	genome.wustl.edu	37	11	5625799	5625799	+	Silent	SNP	C	C	T	rs192827622	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003819.2	+1	reviewed	p.N181	0.985	342	0%	207	20.3%	1	0%	-	-	-	NULL
TRIM22	10346	genome.wustl.edu	37	11	5729464	5729464	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006074.3	+1	reviewed	p.R279*	0.002	497	0%	253	23.3%	49	6.1%	-	-	-	NULL
TRIM22	10346	genome.wustl.edu	37	11	5730402	5730402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006074.3	+1	reviewed	p.A341T	0.000	384	0%	172	18%	49	2%	benign(0.002)	tolerated(0.6)	neutral(0.004)	NULL
TRIM22	10346	genome.wustl.edu	37	11	5730750	5730750	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006074.3	+1	reviewed	p.F457V	0.995	123	0%	78	16.7%	43	9.3%	benign(0.028)	deleterious(0)	neutral(0.446)	HMMPfam_SPRY,HMMSmart_SM00449
OR52N4	390072	genome.wustl.edu	37	11	5776823	5776823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005175.2	+1	validated	p.L285F	0.019	349	0%	77	15.6%	0	-	possibly_damaging(0.769)	deleterious(0.02)	deleterious(0.668)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR56A3	390083	genome.wustl.edu	37	11	5969480	5969480	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003443.2	+1	provisional	p.E302*	1.000	232	0%	151	25.2%	0	-	-	-	-	superfamily_SSF81321
OR52L1	338751	genome.wustl.edu	37	11	6007801	6007801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005173.2	-1	validated	p.F120L	0.991	175	0%	64	28.1%	0	-	possibly_damaging(0.799)	deleterious(0.01)	deleterious(0.707)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C11orf42	160298	genome.wustl.edu	37	11	6231398	6231398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173525.2	+1	validated	p.R131C	1.000	95	0%	72	25%	1	0%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
FAM160A2	84067	genome.wustl.edu	37	11	6238996	6238996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032127.3	-1	validated	p.G621V	0.995	40	0%	45	20%	5	40%	benign(0.037)	tolerated(0.07)	neutral(0.321)	NULL
CNGA4	1262	genome.wustl.edu	37	11	6261575	6261575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037329.2	+1	validated	p.S184N	1.000	26	0%	27	14.8%	0	-	possibly_damaging(0.679)	deleterious(0)	deleterious(0.686)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CNGA4	1262	genome.wustl.edu	37	11	6261604	6261604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037329.2	+1	validated	p.L194M	1.000	30	0%	28	28.6%	0	-	probably_damaging(0.991)	tolerated(0.16)	deleterious(0.504)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CNGA4	1262	genome.wustl.edu	37	11	6261780	6261780	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037329.2	+1	validated	p.L252	1.000	64	0%	78	25.6%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CNGA4	1262	genome.wustl.edu	37	11	6263023	6263023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000254589	+1	known	p.S196I	0.002	238	0%	266	21.4%	0	-	possibly_damaging(0.539)	deleterious(0)	deleterious(0.627)	HMMSmart_cNMP
SMPD1	6609	genome.wustl.edu	37	11	6415705	6415705	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000543.3	+1	reviewed	p.T588	0.000	73	0%	76	14.5%	44	9%	-	-	-	NULL
APBB1	322	genome.wustl.edu	37	11	6422283	6422283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001164.2	-1	reviewed	p.K536N	1.000	326	0%	321	19.3%	16	6.2%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_PH domain-like
APBB1	322	genome.wustl.edu	37	11	6422613	6422613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001164.2	-1	reviewed	p.S517Y	0.999	162	0%	154	14.9%	17	0%	possibly_damaging(0.446)	deleterious(0.03)	deleterious(0.510)	superfamily_PH domain-like
APBB1	322	genome.wustl.edu	37	11	6424557	6424557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001164.2	-1	reviewed	p.Q344H	1.000	163	0%	137	26.3%	10	50%	probably_damaging(0.961)	tolerated(0.18)	neutral(0.460)	superfamily_PH domain-like
FXC1	26515	genome.wustl.edu	37	11	6503043	6503043	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012192.3	+1	validated	p.C32	1.000	139	0%	150	12%	35	31.4%	-	-	-	HMMPfam_zf-Tim10_DDP
DNHD1	144132	genome.wustl.edu	37	11	6550137	6550137	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144666.2	+1	provisional	p.C711	0.908	170	0%	61	23%	0	-	-	-	-	NULL
DNHD1	144132	genome.wustl.edu	37	11	6584682	6584682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144666.2	+1	provisional	p.R3247Q	0.992	265	0%	227	18.1%	1	0%	probably_damaging(0.999)	tolerated(0.61)	deleterious(0.494)	NULL
DNHD1	144132	genome.wustl.edu	37	11	6585654	6585654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144666.2	+1	provisional	p.R3459H	0.956	255	0%	321	20.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
DNHD1	144132	genome.wustl.edu	37	11	6588771	6588771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144666.2	+1	provisional	p.S4011I	0.000	49	0%	73	19.2%	3	0%	possibly_damaging(0.867)	tolerated(0.18)	neutral(0.393)	HMMPfam_Dynein_heavy
RRP8	23378	genome.wustl.edu	37	11	6622595	6622595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015324.2	-1	provisional	p.R234Q	0.878	48	0%	50	22%	16	25%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	NULL
ILK	3611	genome.wustl.edu	37	11	6629279	6629279	+	Silent	SNP	C	C	T	rs56057203		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014794.1	+1	reviewed	p.D31	0.864	197	0%	305	25.9%	90	24.4%	-	-	-	superfamily_ANK
DCHS1	8642	genome.wustl.edu	37	11	6647297	6647297	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003737.2	-1	reviewed	p.A2195	1.000	124	0%	177	24.9%	3	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6648080	6648080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003737.2	-1	reviewed	p.R2064C	0.852	41	0%	73	12.3%	2	0%	probably_damaging(0.96)	tolerated(0.05)	deleterious(0.748)	HMMSmart_CA
DCHS1	8642	genome.wustl.edu	37	11	6653554	6653554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003737.2	-1	reviewed	p.E1063D	1.000	117	0%	140	23.6%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6653630	6653630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003737.2	-1	reviewed	p.A1038V	1.000	85	0%	134	20.9%	0	-	probably_damaging(0.972)	tolerated(0.24)	neutral(0.451)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6661646	6661646	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003737.2	-1	reviewed	p.H400R	0.999	65	0%	73	26%	1	0%	possibly_damaging(0.767)	tolerated(0.71)	neutral(0.286)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6662383	6662383	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003737.2	-1	reviewed	p.E154	1.000	31	0%	29	31%	1	0%	-	-	-	superfamily_Cadherin
OR6A2	8590	genome.wustl.edu	37	11	6816724	6816724	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003696.2	-1	provisional	p.I72	0.101	434	0%	116	26.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2D2	120776	genome.wustl.edu	37	11	6913341	6913341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003700.1	-1	provisional	p.R131C	0.996	126	0%	43	30.2%	0	-	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF214	7761	genome.wustl.edu	37	11	7021930	7021930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013249.2	-1	validated	p.E328D	1.000	299	0%	181	22.1%	1	0%	possibly_damaging(0.611)	tolerated(0.28)	neutral(0.243)	superfamily_C2H2 and C2HC zinc fingers
ZNF214	7761	genome.wustl.edu	37	11	7022178	7022178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013249.2	-1	validated	p.L246I	0.858	136	0%	81	17.3%	4	0%	benign(0.013)	tolerated(0.49)	neutral(0.011)	superfamily_C2H2 and C2HC zinc fingers
OLFML1	283298	genome.wustl.edu	37	11	7530915	7530915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198474.3	+1	validated	p.E235D	1.000	117	0%	124	17.7%	2	0%	probably_damaging(0.979)	tolerated(0.05)	deleterious(0.767)	HMMPfam_OLF,HMMSmart_SM00284
PPFIBP2	8495	genome.wustl.edu	37	11	7661042	7661042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003621.2	+1	validated	p.A439V	0.285	63	0%	57	15.8%	14	50%	benign(0.001)	tolerated(0.61)	neutral(0.004)	NULL
OVCH2	341277	genome.wustl.edu	37	11	7727861	7727861	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198185.2	-1	validated	p.L27	0.027	363	0%	92	18.5%	0	-	-	-	-	NULL
OR5P2	120065	genome.wustl.edu	37	11	7818166	7818166	+	Silent	SNP	G	G	A	rs190297076	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153444.1	-1	provisional	p.C108	1.000	150	0%	33	12.1%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
LMO1	4004	genome.wustl.edu	37	11	8251933	8251933	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002315.1	-1	reviewed	p.C48	0.992	85	0%	68	14.7%	0	-	-	-	-	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
STK33	65975	genome.wustl.edu	37	11	8496313	8496313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030906.2	-1	validated	p.S47I	0.633	321	0%	175	25.7%	2	50%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
ST5	6764	genome.wustl.edu	37	11	8728769	8728769	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005418.3	-1	reviewed	p.L812	1.000	79	0%	84	17.9%	30	33.3%	-	-	-	HMMPfam_DENN,HMMSmart_SM00799
ASCL3	56676	genome.wustl.edu	37	11	8959454	8959454	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020646.1	-1	provisional	p.G85	0.013	191	0%	74	12.2%	0	-	-	-	-	NULL
SCUBE2	57758	genome.wustl.edu	37	11	9042647	9042647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020974.2	-1	validated	p.S982L	1.000	276	0%	123	19.5%	11	45.4%	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
IPO7	10527	genome.wustl.edu	37	11	9462065	9462065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006391.2	+1	reviewed	p.A920D	1.000	689	0.1%	243	10.7%	81	19.7%	possibly_damaging(0.813)	deleterious(0.04)	deleterious(0.656)	superfamily_ARM-type_fold
SWAP70	23075	genome.wustl.edu	37	11	9715818	9715818	+	Silent	SNP	G	G	A	rs113738506		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015055.2	+1	validated	p.R75	1.000	193	0%	72	20.8%	4	25%	-	-	-	superfamily_SSF47473
SBF2	81846	genome.wustl.edu	37	11	10050040	10050040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030962.3	-1	reviewed	p.P193H	1.000	127	0%	40	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DENN,HMMSmart_SM00799
SBF2	81846	genome.wustl.edu	37	11	10051421	10051421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030962.3	-1	reviewed	p.A135D	1.000	159	0%	46	19.6%	1	0%	possibly_damaging(0.446)	tolerated(0.09)	neutral(0.443)	HMMPfam_DENN,HMMSmart_SM00799
MRVI1	10335	genome.wustl.edu	37	11	10622544	10622544	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098579.1	-1	reviewed	p.T637	0.764	291	0%	185	26.5%	4	0%	-	-	-	HMMPfam_MRVI1
MRVI1	10335	genome.wustl.edu	37	11	10649289	10649289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098579.1	-1	reviewed	p.V233I	0.628	133	0.8%	98	26.5%	1	0%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
CTR9	9646	genome.wustl.edu	37	11	10781765	10781765	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014633.3	+1	provisional	p.K213T	1.000	488	0%	268	11.2%	5	0%	benign(0.245)	tolerated(0.41)	neutral(0.040)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
CTR9	9646	genome.wustl.edu	37	11	10785662	10785662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014633.3	+1	provisional	p.H400Y	1.000	429	0%	254	15.7%	7	0%	benign(0.003)	tolerated(0.06)	neutral(0.323)	superfamily_SSF48452
CTR9	9646	genome.wustl.edu	37	11	10788010	10788010	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014633.3	+1	provisional	p.W553*	1.000	336	0%	169	17.2%	4	0%	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
CTR9	9646	genome.wustl.edu	37	11	10789934	10789934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014633.3	+1	provisional	p.V669I	1.000	320	0%	161	12.4%	19	47.3%	benign(0.01)	tolerated(0.89)	neutral(0.001)	superfamily_SSF48452
EIF4G2	1982	genome.wustl.edu	37	11	10825910	10825910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000429377	-1	known	p.C209Y	1.000	203	0%	231	14.7%	159	29.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MIF4G,HMMSmart_MIF4G,superfamily_ARM-type_fold
ZBED5	58486	genome.wustl.edu	37	11	10874611	10874611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143667.1	-1	reviewed	p.A628T	0.998	216	0%	179	25.1%	56	39.2%	benign(0.428)	tolerated(0.5)	neutral(0.149)	NULL
DKK3	27122	genome.wustl.edu	37	11	11986111	11986111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018057.1	-1	reviewed	p.R318H	1.000	109	0%	53	20.8%	12	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MICAL2	9645	genome.wustl.edu	37	11	12183867	12183867	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014632.2	+1	provisional	p.S55	0.955	199	0.5%	66	12.1%	0	-	-	-	-	NULL
MICAL2	9645	genome.wustl.edu	37	11	12246310	12246310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014632.2	+1	provisional	p.S544F	1.000	90	0%	79	25.3%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
MICAL2	9645	genome.wustl.edu	37	11	12278388	12278388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014632.2	+1	provisional	p.F1004L	1.000	180	0%	95	22.1%	5	20%	benign(0.307)	tolerated(0.23)	neutral(0.137)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
FAR1	84188	genome.wustl.edu	37	11	13749118	13749118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032228.5	+1	validated	p.V425I	1.000	297	0%	81	12.3%	18	44.4%	possibly_damaging(0.696)	deleterious(0.01)	deleterious(0.655)	HMMPfam_Sterile
SPON1	10418	genome.wustl.edu	37	11	14096939	14096939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000310358	+1	known	p.S176Y	1.000	236	0%	127	22.8%	52	94.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Spond_N
SPON1	10418	genome.wustl.edu	37	11	14101477	14101477	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000310358	+1	known	p.P195	0.250	269	0%	124	20.2%	65	6.1%	-	-	-	HMMPfam_Spond_N
INSC	387755	genome.wustl.edu	37	11	15197353	15197353	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031853.3	+1	provisional	p.C88	0.943	117	0%	81	25.9%	0	-	-	-	-	NULL
INSC	387755	genome.wustl.edu	37	11	15197489	15197489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031853.3	+1	provisional	p.E134K	0.999	48	0%	42	19%	0	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	superfamily_ARM repeat
INSC	387755	genome.wustl.edu	37	11	15247257	15247257	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031853.3	+1	provisional	p.N398	1.000	138	0%	102	25.5%	1	100%	-	-	-	superfamily_ARM repeat
SOX6	55553	genome.wustl.edu	37	11	15994493	15994493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033326.3	-1	reviewed	p.K763N	1.000	371	0%	118	25.4%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SOX6	55553	genome.wustl.edu	37	11	16007761	16007761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033326.3	-1	reviewed	p.F704L	1.000	407	0.2%	154	18.2%	3	33.3%	benign(0.307)	tolerated(0.13)	neutral(0.348)	NULL
SOX6	55553	genome.wustl.edu	37	11	16010768	16010768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017508.2	-1	reviewed	p.A557T	1.000	186	0%	93	18.3%	1	100%	benign(0.026)	tolerated(0.09)	neutral(0.297)	NULL
SOX6	55553	genome.wustl.edu	37	11	16071288	16071288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017508.2	-1	reviewed	p.S445N	0.998	779	0%	185	13%	0	-	unknown(0)	deleterious(0.05)	-	NULL
SOX6	55553	genome.wustl.edu	37	11	16077444	16077444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033326.3	-1	reviewed	p.L369I	1.000	322	0%	88	22.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PLEKHA7	144100	genome.wustl.edu	37	11	16848050	16848050	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175058.4	-1	validated	p.H320Q	0.013	116	0%	59	16.9%	13	46.1%	benign(0.003)	tolerated(0.32)	neutral(0.024)	NULL
PIK3C2A	5286	genome.wustl.edu	37	11	17141435	17141435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002645.2	-1	validated	p.S915I	1.000	405	0%	303	27.7%	1	100%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_ARM repeat
PIK3C2A	5286	genome.wustl.edu	37	11	17156477	17156477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002645.2	-1	validated	p.P666H	0.005	364	0%	331	23.9%	0	-	benign(0.003)	tolerated(0.12)	neutral(0.261)	NULL
KCNJ11	3767	genome.wustl.edu	37	11	17408610	17408610	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000525.3	-1	reviewed	p.L343	0.931	169	0%	140	22.1%	3	33.3%	-	-	-	HMMPfam_IRK,superfamily_Ig_E-set
ABCC8	6833	genome.wustl.edu	37	11	17418746	17418746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000352.3	-1	reviewed	p.L1328I	1.000	92	0%	125	23.2%	0	-	benign(0.122)	tolerated(0.44)	neutral(0.022)	NULL
ABCC8	6833	genome.wustl.edu	37	11	17483202	17483202	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000352.3	-1	reviewed	p.I250	0.956	190	0%	132	27.3%	0	-	-	-	-	NULL
ABCC8	6833	genome.wustl.edu	37	11	17496454	17496454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000352.3	-1	reviewed	p.A90V	0.998	368	0%	363	25.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
KCNC1	3746	genome.wustl.edu	37	11	17793600	17793600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001112741.1	+1	reviewed	p.R320H	1.000	60	0%	44	20.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
MRGPRX4	117196	genome.wustl.edu	37	11	18195767	18195767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_054032.3	+1	validated	p.P322S	0.027	145	0%	131	14.5%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
ENSG00000189332	0	genome.wustl.edu	37	11	18231432	18231432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000340135	+1	known	p.T73M	1.000	150	0%	136	24.3%	0	-	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	superfamily_Mitochondrial carrier
HPS5	11234	genome.wustl.edu	37	11	18309205	18309205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181507.1	-1	reviewed	p.R865Q	1.000	292	0%	216	23.1%	31	29%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
GTF2H1	2965	genome.wustl.edu	37	11	18359704	18359704	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142307.1	+1	validated	p.V132	1.000	567	0%	305	21%	13	76.9%	-	-	-	HMMPfam_BSD,HMMSmart_SM00751
LDHA	3939	genome.wustl.edu	37	11	18418496	18418496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005566.3	+1	reviewed	p.A36V	1.000	294	0%	266	23.3%	673	41.4%	possibly_damaging(0.507)	deleterious(0.04)	deleterious(0.518)	HMMPfam_Ldh_1_N,superfamily_NAD(P)-binding Rossmann-fold domains
LDHA	3939	genome.wustl.edu	37	11	18424561	18424561	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005566.3	+1	reviewed	e4+1	1.000	169	0%	182	13.2%	0	-	-	-	-	-
TSG101	7251	genome.wustl.edu	37	11	18503300	18503300	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006292.2	-1	reviewed	p.P320	1.000	632	0%	318	18.9%	151	43.7%	-	-	-	HMMPfam_Vps23_core
SPTY2D1	144108	genome.wustl.edu	37	11	18636512	18636512	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194285.2	-1	validated	p.Q437*	0.505	48	0%	29	20.7%	1	0%	-	-	-	NULL
SPTY2D1	144108	genome.wustl.edu	37	11	18655786	18655786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194285.2	-1	validated	p.L7F	1.000	178	0%	148	18.2%	2	0%	possibly_damaging(0.897)	deleterious(0)	deleterious(0.798)	NULL
PTPN5	84867	genome.wustl.edu	37	11	18750529	18750529	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006906.1	-1	validated	p.H550	0.998	243	0%	214	12.6%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
MRGPRX1	259249	genome.wustl.edu	37	11	18956158	18956158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_147199.3	-1	provisional	p.R58S	0.028	230	0%	188	12.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_SSF81321
ZDHHC13	54503	genome.wustl.edu	37	11	19173825	19173825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019028.2	+1	validated	p.K235N	1.000	560	0%	155	17.4%	4	25%	possibly_damaging(0.811)	deleterious(0.03)	deleterious(0.670)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ZDHHC13	54503	genome.wustl.edu	37	11	19180593	19180593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000319776	+1	known	p.P372T	1.000	637	0.2%	206	16%	0	-	-	-	-	NULL
E2F8	79733	genome.wustl.edu	37	11	19247159	19247159	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024680.2	-1	validated	p.V677G	1.000	292	0%	202	20.3%	16	18.7%	benign(0.038)	deleterious(0.01)	neutral(0.408)	NULL
E2F8	79733	genome.wustl.edu	37	11	19256043	19256043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024680.2	-1	validated	p.K264N	1.000	400	0%	392	21.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_E2F_TDP,superfamily_""Winged helix"" DNA-binding domain"
NAV2	89797	genome.wustl.edu	37	11	20113856	20113856	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182964.5	+1	validated	p.P1922	0.000	52	0%	23	21.7%	1	100%	-	-	-	NULL
NAV2	89797	genome.wustl.edu	37	11	20127174	20127174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182964.5	+1	validated	p.R2251C	0.998	199	0%	85	21.2%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DBX1	120237	genome.wustl.edu	37	11	20178227	20178227	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001029865.1	-1	provisional	p.R228*	0.000	22	0%	14	42.9%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
DBX1	120237	genome.wustl.edu	37	11	20180751	20180751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001029865.1	-1	provisional	p.S152Y	1.000	437	0.2%	321	21.8%	0	-	possibly_damaging(0.86)	deleterious(0.01)	deleterious(0.738)	NULL
PRMT3	10196	genome.wustl.edu	37	11	20529919	20529919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005788.3	+1	validated	p.L519P	0.996	202	0%	66	19.7%	30	30%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ANO5	203859	genome.wustl.edu	37	11	22249033	22249033	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213599.2	+1	reviewed	p.H183Q	0.065	255	0%	50	20%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
ANO5	203859	genome.wustl.edu	37	11	22281093	22281093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213599.2	+1	reviewed	p.A479D	1.000	582	0%	151	18.5%	0	-	possibly_damaging(0.649)	deleterious(0)	deleterious(0.672)	NULL
SLC17A6	57084	genome.wustl.edu	37	11	22384325	22384325	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020346.2	+1	validated	p.G234	1.000	812	0%	476	22.7%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SVIP	258010	genome.wustl.edu	37	11	22848808	22848808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_148893.1	-1	provisional	p.E55G	1.000	90	0%	194	19.6%	37	35.1%	benign(0.133)	deleterious(0)	neutral(0.456)	NULL
LUZP2	338645	genome.wustl.edu	37	11	24518839	24518839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009909.2	+1	validated	p.V17A	1.000	22	0%	44	27.3%	0	-	benign(0.053)	deleterious(0)	neutral(0.448)	NULL
LUZP2	338645	genome.wustl.edu	37	11	25004764	25004764	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009909.2	+1	validated	p.T230	0.000	282	0%	68	22.1%	0	-	-	-	-	NULL
ANO3	63982	genome.wustl.edu	37	11	26620414	26620414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031418.2	+1	validated	p.R514C	1.000	227	0%	95	27.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ANO3	63982	genome.wustl.edu	37	11	26677934	26677934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031418.2	+1	validated	p.Y890C	1.000	426	0%	209	12.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF590
SLC5A12	159963	genome.wustl.edu	37	11	26743102	26743102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178498.3	-1	validated	p.G54S	0.994	184	0%	101	16.8%	0	-	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_SSF
BDNF	627	genome.wustl.edu	37	11	27679757	27679757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143810.1	-1	reviewed	p.A201T	1.000	224	0%	274	14.6%	1	0%	possibly_damaging(0.507)	deleterious(0)	deleterious(0.614)	NULL
KIF18A	81930	genome.wustl.edu	37	11	28057835	28057835	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031217.3	-1	validated	p.D775	0.115	426	0%	149	20.8%	29	58.6%	-	-	-	NULL
KIF18A	81930	genome.wustl.edu	37	11	28090928	28090928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031217.3	-1	validated	p.R490C	0.981	339	0.3%	83	20.5%	9	44.4%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	NULL
KIF18A	81930	genome.wustl.edu	37	11	28119395	28119395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031217.3	-1	validated	p.V34I	1.000	221	0%	184	19.6%	6	50%	possibly_damaging(0.653)	tolerated(0.42)	neutral(0.244)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
KCNA4	3739	genome.wustl.edu	37	11	30033434	30033434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002233.2	-1	reviewed	p.E264D	1.000	82	1.2%	110	24.5%	0	-	benign(0.011)	tolerated(0.23)	neutral(0.042)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
MPPED2	744	genome.wustl.edu	37	11	30516846	30516846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001584.2	-1	reviewed	p.P178L	1.000	315	0%	222	20.3%	10	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
DCDC1	341019	genome.wustl.edu	37	11	31349706	31349706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181807.2	-1	validated	p.T41N	0.001	303	0.3%	224	19.6%	0	-	possibly_damaging(0.638)	deleterious(0.02)	deleterious(0.607)	NULL
PAX6	5080	genome.wustl.edu	37	11	31812352	31812352	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001604.4	-1	reviewed	p.S377	0.950	288	0%	170	20.6%	16	93.7%	-	-	-	NULL
PAX6	5080	genome.wustl.edu	37	11	31812409	31812409	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001604.4	-1	reviewed	e10-1	1.000	185	0%	114	21.1%	0	-	-	-	-	-
PAX6	5080	genome.wustl.edu	37	11	31823185	31823185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001604.4	-1	reviewed	p.C108Y	1.000	198	0%	252	25%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAX,HMMSmart_PAX,superfamily_Homeodomain_like
PAX6	5080	genome.wustl.edu	37	11	31832564	31832564	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001604.4	-1	reviewed	e1-1	1.000	7	0.000	45	0.178	3	33.3%	-	-	-	-
QSER1	79832	genome.wustl.edu	37	11	32953336	32953336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001076786.1	+1	provisional	p.P49S	1.000	400	0%	145	23.4%	4	75%	possibly_damaging(0.863)	tolerated(0.24)	neutral(0.371)	NULL
QSER1	79832	genome.wustl.edu	37	11	32953772	32953772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001076786.1	+1	provisional	p.R194Q	1.000	198	0.5%	88	10.2%	1	0%	possibly_damaging(0.666)	tolerated(0.06)	deleterious(0.558)	NULL
QSER1	79832	genome.wustl.edu	37	11	32987973	32987973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001076786.1	+1	provisional	p.E1570D	1.000	275	0%	194	13.9%	7	14.2%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
CSTF3	1479	genome.wustl.edu	37	11	33129474	33129474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001326.2	-1	reviewed	p.T111A	1.000	501	0%	208	25.5%	10	60%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	superfamily_TPR-like
HIPK3	10114	genome.wustl.edu	37	11	33308518	33308518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005734.3	+1	validated	p.Q186H	0.996	113	0%	66	15.2%	1	0%	benign(0.02)	deleterious(0.01)	neutral(0.407)	superfamily_Protein kinase-like (PK-like)
HIPK3	10114	genome.wustl.edu	37	11	33370735	33370735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005734.3	+1	validated	p.L903F	1.000	395	0%	126	23.8%	11	36.3%	probably_damaging(0.99)	tolerated(0.11)	deleterious(0.713)	NULL
C11orf41	25758	genome.wustl.edu	37	11	33596361	33596361	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012194.1	+1	validated	p.T1157	1.000	206	0.5%	56	26.8%	0	-	-	-	-	NULL
FBXO3	26273	genome.wustl.edu	37	11	33776033	33776033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012175.3	-1	reviewed	p.R231Q	1.000	424	0.2%	168	25%	14	42.8%	benign(0.004)	tolerated(0.34)	neutral(0.023)	HMMPfam_SMI1_KNR4
FBXO3	26273	genome.wustl.edu	37	11	33777361	33777361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012175.3	-1	reviewed	p.A212S	0.991	225	0%	110	22.7%	14	42.8%	benign(0)	tolerated(0.81)	neutral(0.001)	HMMPfam_SMI1_KNR4
FBXO3	26273	genome.wustl.edu	37	11	33777486	33777486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012175.3	-1	reviewed	p.R170H	1.000	176	0%	69	11.6%	15	13.3%	benign(0.107)	tolerated(0.2)	neutral(0.058)	HMMPfam_SMI1_KNR4
CAPRIN1	4076	genome.wustl.edu	37	11	34097897	34097897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005898.4	+1	validated	p.D161Y	1.000	231	0%	126	17.5%	65	47.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CAPRIN1	4076	genome.wustl.edu	37	11	34107631	34107631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005898.4	+1	validated	p.Q329H	1.000	133	0%	113	20.4%	61	21.3%	benign(0.02)	tolerated(0.29)	neutral(0.030)	NULL
CAPRIN1	4076	genome.wustl.edu	37	11	34107766	34107766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005898.4	+1	validated	p.Q374H	1.000	87	0%	98	19.4%	58	17.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CAPRIN1	4076	genome.wustl.edu	37	11	34120902	34120902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005898.4	+1	validated	p.Q706H	1.000	181	0%	92	19.6%	139	30.2%	unknown(0)	deleterious(0)	-	NULL
NAT10	55226	genome.wustl.edu	37	11	34167693	34167693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024662.2	+1	validated	p.R1011I	0.999	695	0%	332	22.3%	55	34.5%	unknown(0)	deleterious(0.05)	-	NULL
ELF5	2001	genome.wustl.edu	37	11	34503985	34503985	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198381.1	-1	reviewed	p.S166	0.185	459	0%	203	18.2%	0	-	-	-	-	NULL
PDHX	8050	genome.wustl.edu	37	11	34979121	34979121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003477.2	+1	reviewed	p.G178E	0.008	99	0%	67	17.9%	26	57.6%	possibly_damaging(0.449)	tolerated(0.35)	neutral(0.167)	superfamily_E3_bd
SLC1A2	6506	genome.wustl.edu	37	11	35339032	35339032	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004171.3	-1	reviewed	p.R17*	0.994	150	0%	51	21.6%	0	-	-	-	-	NULL
ENSG00000186082	0	genome.wustl.edu	37	11	35882096	35882096	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000333983	-1	known	p.H319	0.758	16	0%	22	27.3%	0	-	-	-	-	HMMPfam_Filament
ENSG00000186082	0	genome.wustl.edu	37	11	35882296	35882296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000333983	-1	known	p.L253I	0.956	66	0%	42	21.4%	0	-	-	-	-	HMMPfam_Filament
PRR5L	79899	genome.wustl.edu	37	11	36422835	36422835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024841.4	+1	validated	p.S55I	1.000	34	0%	36	19.4%	2	50%	possibly_damaging(0.468)	deleterious(0.01)	deleterious(0.559)	HMMPfam_HbrB
TRAF6	7189	genome.wustl.edu	37	11	36511764	36511764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004620.2	-1	reviewed	p.P398L	1.000	339	0%	157	21%	9	22.2%	possibly_damaging(0.527)	deleterious(0.01)	deleterious(0.584)	HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like
TRAF6	7189	genome.wustl.edu	37	11	36511925	36511925	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004620.2	-1	reviewed	p.I344	0.981	402	0%	157	17.2%	2	50%	-	-	-	NULL
RAG1	5896	genome.wustl.edu	37	11	36596826	36596826	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000448.2	+1	reviewed	p.L658V	0.003	156	0%	50	22%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RAG2	5897	genome.wustl.edu	37	11	36614670	36614670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000536.3	-1	reviewed	p.C350Y	1.000	626	0%	440	19.3%	0	-	benign(0.173)	deleterious(0.01)	neutral(0.422)	HMMPfam_RAG2
LRRC4C	57689	genome.wustl.edu	37	11	40136151	40136151	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020929.1	-1	validated	p.R564	1.000	596	0%	172	19.2%	0	-	-	-	-	NULL
LRRC4C	57689	genome.wustl.edu	37	11	40136551	40136551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020929.1	-1	validated	p.S431F	1.000	197	0%	63	14.3%	0	-	possibly_damaging(0.822)	deleterious(0.05)	deleterious(0.656)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
LRRC4C	57689	genome.wustl.edu	37	11	40137621	40137621	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020929.1	-1	validated	p.I74	1.000	165	0%	77	20.8%	1	0%	-	-	-	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like
LRRC4C	57689	genome.wustl.edu	37	11	40137641	40137641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020929.1	-1	validated	p.R68C	0.623	180	0%	78	23.1%	1	0%	possibly_damaging(0.938)	deleterious(0.05)	deleterious(0.729)	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like
LOC399881	399881	genome.wustl.edu	37	11	43283761	43283761	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_040375.2	-1	model	NULL	1.000	69	0%	27	22.2%	0	-	-	-	-	-
LOC399881	399881	genome.wustl.edu	37	11	43284675	43284675	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_040375.2	-1	model	NULL	1.000	89	0%	35	17.1%	0	-	-	-	-	-
API5	8539	genome.wustl.edu	37	11	43364195	43364195	+	RNA	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_024625.1	+1	validated	NULL	1.000	36	0%	17	23.5%	84	42.8%	unknown(0)	-	-	-
TTC17	55761	genome.wustl.edu	37	11	43400797	43400797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018259.5	+1	validated	p.M58I	1.000	175	0%	42	23.8%	5	40%	benign(0.06)	tolerated(0.12)	neutral(0.265)	NULL
TTC17	55761	genome.wustl.edu	37	11	43511819	43511819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018259.5	+1	validated	p.A1021T	1.000	97	0%	25	16%	27	51.8%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_TPR,superfamily_SSF48452
ACCSL	390110	genome.wustl.edu	37	11	44069845	44069845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031854.2	+1	validated	p.A87T	0.000	79	0%	24	16.7%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
ACCSL	390110	genome.wustl.edu	37	11	44074213	44074213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031854.2	+1	validated	p.E258D	0.300	479	0%	199	21.6%	0	-	benign(0.045)	tolerated(1)	neutral(0.003)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ACCS	84680	genome.wustl.edu	37	11	44097138	44097138	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127219.1	+1	validated	p.A184	0.001	321	0%	282	23%	6	0%	-	-	-	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major
EXT2	2132	genome.wustl.edu	37	11	44130830	44130830	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000401.3	+1	reviewed	p.D221A	1.000	235	0%	149	14.1%	31	38.7%	benign(0.02)	tolerated(0.05)	neutral(0.346)	HMMPfam_Exostosin
CD82	3732	genome.wustl.edu	37	11	44626654	44626654	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002231.3	+1	reviewed	p.G61	0.056	173	0%	126	19%	29	24.1%	-	-	-	HMMPfam_Tetraspannin
CD82	3732	genome.wustl.edu	37	11	44640598	44640598	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002231.3	+1	reviewed	e8-1	1.000	108	0%	82	17.1%	10	80%	-	-	-	-
TSPAN18	90139	genome.wustl.edu	37	11	44948230	44948230	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130783.4	+1	validated	p.C207	0.995	155	0%	83	14.5%	2	0%	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
TP53I11	9537	genome.wustl.edu	37	11	44959842	44959842	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001076787.1	-1	validated	p.Q15	1.000	79	0%	102	21.6%	21	47.6%	-	-	-	NULL
SYT13	57586	genome.wustl.edu	37	11	45265684	45265684	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020826.2	-1	validated	p.S400	0.001	77	0%	51	21.6%	13	69.2%	-	-	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CHST1	8534	genome.wustl.edu	37	11	45671251	45671251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003654.4	-1	validated	p.R408H	0.998	19	0%	29	20.7%	2	0%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
CHST1	8534	genome.wustl.edu	37	11	45672417	45672417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003654.4	-1	validated	p.Q19H	1.000	43	0%	33	30.3%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC35C1	55343	genome.wustl.edu	37	11	45832511	45832511	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018389.4	+1	reviewed	p.I240	0.999	49	2%	56	16.1%	35	45.7%	-	-	-	HMMPfam_TPT
CRY2	1408	genome.wustl.edu	37	11	45891195	45891195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021117.3	+1	validated	p.R362S	1.000	109	0%	65	32.3%	7	42.8%	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_FAD_binding_7,superfamily_Photolyase_FAD-bd/Cryptochr_C
PEX16	9409	genome.wustl.edu	37	11	45932474	45932474	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_057174.2	-1	reviewed	p.H309	0.946	67	0%	74	18.9%	61	47.5%	-	-	-	HMMPfam_Pex16
PEX16	9409	genome.wustl.edu	37	11	45937083	45937083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_057174.2	-1	reviewed	p.K132N	1.000	151	0%	145	22.1%	139	37.4%	probably_damaging(0.977)	tolerated(0.06)	deleterious(0.742)	HMMPfam_Pex16
GYLTL1B	120071	genome.wustl.edu	37	11	45946196	45946196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152312.3	+1	validated	p.S211L	1.000	203	0%	265	19.6%	13	84.6%	benign(0.004)	tolerated(0.58)	neutral(0.005)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
PHF21A	51317	genome.wustl.edu	37	11	45991391	45991391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001101802.1	-1	validated	p.T225I	1.000	576	0%	220	26.4%	10	40%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
PHF21A	51317	genome.wustl.edu	37	11	46098328	46098328	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001101802.1	-1	validated	p.I44L	1.000	512	0.2%	346	18.2%	4	25%	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
CREB3L1	90993	genome.wustl.edu	37	11	46332668	46332668	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052854.2	+1	validated	p.P227	0.997	49	0%	52	23.1%	6	0%	-	-	-	NULL
DGKZ	8525	genome.wustl.edu	37	11	46391092	46391092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105540.1	+1	reviewed	p.V353I	0.032	139	0%	198	22.7%	33	42.4%	benign(0.003)	tolerated(0.56)	neutral(0.006)	NULL
DGKZ	8525	genome.wustl.edu	37	11	46400051	46400051	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105540.1	+1	reviewed	e27+1	1.000	148	0%	136	22.8%	7	28.5%	-	-	-	-
CHRM4	1132	genome.wustl.edu	37	11	46406856	46406856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000741.2	-1	reviewed	p.V418I	0.996	333	0%	258	11.2%	0	-	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CHRM4	1132	genome.wustl.edu	37	11	46407157	46407157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000741.2	-1	reviewed	p.E317D	1.000	133	0%	113	10.6%	0	-	benign(0.083)	tolerated(0.58)	neutral(0.011)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CHRM4	1132	genome.wustl.edu	37	11	46407510	46407510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000741.2	-1	reviewed	p.A200T	0.992	76	0%	82	26.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
AMBRA1	55626	genome.wustl.edu	37	11	46419115	46419115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017749.2	-1	validated	p.P1171L	0.352	315	0%	275	21.8%	30	33.3%	benign(0.141)	tolerated(1)	neutral(0.012)	NULL
F2	2147	genome.wustl.edu	37	11	46749628	46749628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000506.3	+1	reviewed	p.A405T	1.000	57	0%	47	10.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS
CKAP5	9793	genome.wustl.edu	37	11	46782292	46782292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008938.1	-1	validated	p.R1422W	1.000	495	0.2%	125	12.8%	41	12.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRP4	4038	genome.wustl.edu	37	11	46918427	46918427	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002334.3	-1	reviewed	p.E305	1.000	275	0%	297	23.2%	1	100%	-	-	-	HMMSmart_SM00192,HMMSmart_SM00181
C11orf49	79096	genome.wustl.edu	37	11	47073953	47073953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003677.1	+1	validated	p.C55Y	1.000	295	0%	158	13.9%	50	42%	benign(0.048)	tolerated(0.42)	neutral(0.017)	NULL
ARFGAP2	84364	genome.wustl.edu	37	11	47189750	47189750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032389.3	-1	provisional	p.P332S	1.000	387	0%	261	20.7%	70	35.7%	unknown(0)	deleterious(0.01)	-	NULL
DDB2	1643	genome.wustl.edu	37	11	47256408	47256408	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000107.2	+1	reviewed	p.K268T	1.000	123	0%	76	19.7%	35	45.7%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
MADD	8567	genome.wustl.edu	37	11	47305747	47305747	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003682.3	+1	reviewed	p.D627	0.287	451	0%	314	23.6%	4	0%	-	-	-	NULL
MADD	8567	genome.wustl.edu	37	11	47330219	47330219	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003682.3	+1	reviewed	p.S1279	1.000	130	0%	82	23.2%	19	26.3%	-	-	-	NULL
MADD	8567	genome.wustl.edu	37	11	47350243	47350243	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003682.3	+1	reviewed	p.Y1609	1.000	188	0%	139	21.6%	49	24.4%	-	-	-	NULL
MYBPC3	4607	genome.wustl.edu	37	11	47359094	47359094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000256.3	-1	reviewed	p.R817Q	1.000	141	0%	141	19.9%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
PSMC3	5702	genome.wustl.edu	37	11	47444254	47444254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002804.4	-1	reviewed	p.A252V	1.000	82	0%	69	27.5%	310	42.2%	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAPSN	5913	genome.wustl.edu	37	11	47462750	47462750	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005055.3	-1	reviewed	p.I309N	0.977	79	0%	96	21.9%	0	-	benign(0.004)	tolerated(0.06)	neutral(0.323)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
KBTBD4	55709	genome.wustl.edu	37	11	47594601	47594601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018095.4	-1	validated	p.R496W	1.000	128	0%	103	25.2%	33	42.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KBTBD4	55709	genome.wustl.edu	37	11	47594892	47594892	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018095.4	-1	validated	p.L399	0.995	203	0%	185	22.7%	29	41.3%	-	-	-	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
KBTBD4	55709	genome.wustl.edu	37	11	47594984	47594984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018095.4	-1	validated	p.R368H	1.000	218	0%	177	26.6%	26	38.4%	benign(0.312)	tolerated(0.16)	neutral(0.157)	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2
MTCH2	23788	genome.wustl.edu	37	11	47653241	47653241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014342.3	-1	validated	p.R131H	1.000	261	0%	112	14.3%	184	46.7%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
MTCH2	23788	genome.wustl.edu	37	11	47657124	47657124	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014342.3	-1	validated	e4-1	1.000	524	0%	336	19.3%	0	-	-	-	-	-
FNBP4	23360	genome.wustl.edu	37	11	47744718	47744718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015308.2	-1	validated	p.M872T	0.942	253	0%	149	21.5%	20	50%	benign(0.013)	deleterious(0.02)	neutral(0.384)	NULL
NUP160	23279	genome.wustl.edu	37	11	47810091	47810091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015231.1	-1	validated	p.T1195I	0.994	225	0%	144	29.2%	31	45.1%	possibly_damaging(0.816)	tolerated(0.06)	deleterious(0.631)	NULL
OR4X2	119764	genome.wustl.edu	37	11	48267394	48267394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004727.1	+1	provisional	p.V247I	0.013	190	0%	62	24.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FOLH1	2346	genome.wustl.edu	37	11	49186262	49186262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004476.1	-1	reviewed	p.K479E	1.000	324	0%	225	21.8%	13	46.1%	possibly_damaging(0.872)	deleterious(0.01)	deleterious(0.745)	superfamily_Zn-dependent exopeptidases
FOLH1	2346	genome.wustl.edu	37	11	49221902	49221902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004476.1	-1	reviewed	p.D106N	1.000	427	0.2%	477	21.8%	6	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
OR4C13	283092	genome.wustl.edu	37	11	49974756	49974756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001955.2	+1	validated	p.A261D	0.000	448	0%	127	21.3%	0	-	possibly_damaging(0.768)	deleterious(0.04)	deleterious(0.634)	HMMPfam_7tm_1,superfamily_SSF81321
OR4C12	283093	genome.wustl.edu	37	11	50003768	50003768	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005270.2	-1	validated	p.I90	0.849	192	0%	82	15.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4A5	81318	genome.wustl.edu	37	11	51411567	51411567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005272.3	-1	validated	p.H277Y	0.947	161	0%	55	18.2%	0	-	benign(0.119)	deleterious(0)	neutral(0.454)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TRIM48	79097	genome.wustl.edu	37	11	55032719	55032719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024114.3	+1	validated	p.L130M	0.996	252	0.4%	76	21.1%	0	-	probably_damaging(0.969)	tolerated(0.09)	deleterious(0.708)	HMMPfam_zf-B_box,HMMSmart_SM00336
ENSG00000166007	0	genome.wustl.edu	37	11	55065654	55065654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000309470	-1	known	p.G31V	0.995	92	0%	21	19%	0	-	-	-	-	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
OR4A15	81328	genome.wustl.edu	37	11	55136019	55136019	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005275.1	+1	provisional	p.T220	0.007	592	0.2%	173	20.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000181950	0	genome.wustl.edu	37	11	55234888	55234888	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000314689	+1	known	p.I119	0.136	66	0%	49	30.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4C16	219428	genome.wustl.edu	37	11	55339654	55339654	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004701.2	+1	validated	p.Q17	0.032	305	0%	134	23.1%	0	-	-	-	-	superfamily_SSF81321
OR4P4	81300	genome.wustl.edu	37	11	55406128	55406128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004124.1	+1	provisional	p.L99I	0.004	349	0%	76	15.8%	0	-	probably_damaging(0.972)	tolerated(0.22)	neutral(0.456)	HMMPfam_7tm_1,superfamily_SSF81321
OR4P4	81300	genome.wustl.edu	37	11	55406404	55406404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004124.1	+1	provisional	p.H191Y	0.000	342	0.6%	121	26.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5L1	219437	genome.wustl.edu	37	11	55578960	55578960	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004738.1	+1	provisional	p.C6	0.021	404	0%	254	24.8%	0	-	-	-	-	superfamily_SSF81321
OR5L1	219437	genome.wustl.edu	37	11	55579534	55579534	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004738.1	+1	provisional	p.L198	0.000	393	0%	264	22.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5D16	390144	genome.wustl.edu	37	11	55606428	55606428	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005496.1	+1	provisional	p.H67	0.734	472	0.2%	141	17.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR10AG1	282770	genome.wustl.edu	37	11	55735063	55735063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005491.1	-1	provisional	p.R293G	0.921	169	0%	73	26%	0	-	probably_damaging(0.962)	deleterious(0.04)	deleterious(0.754)	superfamily_Family A G protein-coupled receptor-like
OR7E5P	219445	genome.wustl.edu	37	11	55746836	55746836	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000399170	-1	known	p.T207	0.922	162	0.6%	97	16.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR7E5P	219445	genome.wustl.edu	37	11	55746910	55746910	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000399170	-1	known	p.L183	0.030	296	0%	220	22.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5F1	338674	genome.wustl.edu	37	11	55761862	55761862	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003697.1	-1	provisional	p.K80	0.004	140	0%	44	22.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8I2	120586	genome.wustl.edu	37	11	55860932	55860932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003750.1	+1	provisional	p.R50I	0.000	742	0.1%	214	22%	0	-	possibly_damaging(0.509)	tolerated(0.45)	neutral(0.183)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8H2	390151	genome.wustl.edu	37	11	55872720	55872720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005200.1	+1	provisional	p.S68P	0.662	766	0%	286	23.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
OR8H3	390152	genome.wustl.edu	37	11	55890175	55890175	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005201.1	+1	provisional	p.T109	0.000	596	0%	243	12.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8H3	390152	genome.wustl.edu	37	11	55890226	55890226	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005201.1	+1	provisional	p.I126	1.000	519	0.2%	219	18.7%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR8J3	81168	genome.wustl.edu	37	11	55905162	55905162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004064.1	-1	provisional	p.E11D	0.342	250	0%	360	10.6%	0	-	possibly_damaging(0.93)	tolerated(0.08)	deleterious(0.676)	superfamily_SSF81321
OR5T3	390154	genome.wustl.edu	37	11	56020246	56020246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004747.1	+1	provisional	p.V191M	0.000	575	0%	291	22%	0	-	possibly_damaging(0.908)	tolerated(0.22)	neutral(0.403)	HMMPfam_7tm_1,superfamily_SSF81321
OR5T3	390154	genome.wustl.edu	37	11	56020357	56020357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004747.1	+1	provisional	p.L228I	0.000	523	0%	285	22.1%	0	-	probably_damaging(1)	tolerated(0.31)	deleterious(0.527)	HMMPfam_7tm_1,superfamily_SSF81321
OR8H1	219469	genome.wustl.edu	37	11	56058043	56058043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005199.1	-1	provisional	p.H166Y	0.022	288	0%	152	13.2%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8K3	219473	genome.wustl.edu	37	11	56086518	56086518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005202.1	+1	provisional	p.V246M	0.932	360	0%	164	25.6%	0	-	benign(0.208)	deleterious(0.01)	neutral(0.426)	HMMPfam_7tm_1,superfamily_SSF81321
OR8K3	219473	genome.wustl.edu	37	11	56086627	56086627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005202.1	+1	provisional	p.P282H	0.991	243	0%	141	22%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR8K3	219473	genome.wustl.edu	37	11	56086656	56086656	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005202.1	+1	provisional	p.R292*	0.986	236	0%	133	21.1%	0	-	-	-	-	superfamily_SSF81321
OR8K1	390157	genome.wustl.edu	37	11	56114154	56114154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002907.1	+1	provisional	p.L214F	0.000	345	0%	156	22.4%	0	-	benign(0.006)	tolerated(0.35)	neutral(0.021)	HMMPfam_7tm_1,superfamily_SSF81321
OR8J1	219477	genome.wustl.edu	37	11	56127958	56127958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005205.1	+1	provisional	p.P79L	1.000	479	0%	187	27.3%	0	-	benign(0.147)	deleterious(0.01)	neutral(0.419)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5M10	390167	genome.wustl.edu	37	11	56345026	56345026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004741.1	-1	provisional	p.P58S	0.999	549	0%	322	18%	0	-	possibly_damaging(0.728)	deleterious(0.01)	deleterious(0.671)	HMMPfam_7tm_1,superfamily_SSF81321
APLNR	187	genome.wustl.edu	37	11	57003771	57003771	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005161.4	-1	reviewed	p.R236	0.853	116	0%	110	26.4%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TNKS1BP1	85456	genome.wustl.edu	37	11	57076793	57076793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033396.2	-1	validated	p.R1131I	0.006	63	0%	56	28.6%	88	38.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TNKS1BP1	85456	genome.wustl.edu	37	11	57077271	57077271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033396.2	-1	validated	p.A972T	0.000	106	0.9%	114	18.4%	61	32.7%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
TNKS1BP1	85456	genome.wustl.edu	37	11	57081165	57081165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033396.2	-1	validated	p.A333T	0.000	79	1.3%	87	20.7%	19	42.1%	benign(0.013)	deleterious(0.04)	neutral(0.349)	NULL
SSRP1	6749	genome.wustl.edu	37	11	57095792	57095792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003146.2	-1	reviewed	p.K530N	0.936	307	0%	478	19.9%	233	43.7%	probably_damaging(0.958)	tolerated(0.2)	neutral(0.451)	NULL
SSRP1	6749	genome.wustl.edu	37	11	57099656	57099656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003146.2	-1	reviewed	p.R324H	1.000	190	0%	188	23.4%	227	45.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SSrecog
SSRP1	6749	genome.wustl.edu	37	11	57101995	57101995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003146.2	-1	reviewed	p.G61V	1.000	402	0%	388	19.6%	100	44%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SSRP1	6749	genome.wustl.edu	37	11	57102043	57102043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003146.2	-1	reviewed	p.A45D	1.000	478	0%	441	23.4%	123	47.1%	possibly_damaging(0.837)	deleterious(0.03)	deleterious(0.684)	NULL
SLC43A1	8501	genome.wustl.edu	37	11	57261558	57261558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003627.4	-1	provisional	p.R260M	1.000	72	0%	95	25.3%	5	60%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_MFS general substrate transporter
SERPING1	710	genome.wustl.edu	37	11	57373488	57373488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000062.2	+1	reviewed	p.A231T	0.590	320	0%	198	20.2%	525	23.8%	benign(0.008)	tolerated(0.64)	neutral(0.003)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPING1	710	genome.wustl.edu	37	11	57379257	57379257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000062.2	+1	reviewed	p.R366H	0.000	200	0%	115	15.7%	540	7.7%	benign(0.001)	tolerated(0.57)	neutral(0.006)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPING1	710	genome.wustl.edu	37	11	57381816	57381816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000062.2	+1	reviewed	p.S422Y	0.000	209	0%	84	23.8%	566	21.3%	possibly_damaging(0.892)	tolerated(0.17)	neutral(0.410)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
CLP1	10978	genome.wustl.edu	37	11	57426965	57426965	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006831.2	+1	validated	p.N6I	0.002	227	0%	173	25.4%	6	66.6%	benign(0.076)	tolerated(0.17)	neutral(0.065)	NULL
ZDHHC5	25921	genome.wustl.edu	37	11	57466653	57466653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015457.2	+1	validated	p.R582H	1.000	62	1.6%	40	25%	69	27.5%	possibly_damaging(0.774)	tolerated(0.13)	deleterious(0.541)	NULL
ZDHHC5	25921	genome.wustl.edu	37	11	57466821	57466821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015457.2	+1	validated	p.S638I	1.000	65	0%	33	18.2%	77	44.1%	benign(0.17)	deleterious(0.01)	neutral(0.421)	NULL
CTNND1	1500	genome.wustl.edu	37	11	57561489	57561489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001085458.1	+1	validated	p.R68Q	1.000	370	0%	312	17.9%	8	62.5%	probably_damaging(0.999)	tolerated(0.32)	deleterious(0.514)	NULL
CTNND1	1500	genome.wustl.edu	37	11	57564049	57564049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001085458.1	+1	validated	p.D181Y	1.000	117	0%	78	24.4%	25	36%	benign(0.313)	tolerated(0.12)	neutral(0.358)	NULL
CTNND1	1500	genome.wustl.edu	37	11	57569304	57569304	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001085458.1	+1	validated	p.S352	1.000	90	0%	56	23.2%	29	55.1%	-	-	-	NULL
CTNND1	1500	genome.wustl.edu	37	11	57573419	57573419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001085458.1	+1	validated	p.Q596H	0.998	321	0%	117	17.9%	38	39.4%	benign(0)	tolerated(0.28)	neutral(0.032)	superfamily_ARM repeat
CTNND1	1500	genome.wustl.edu	37	11	57574424	57574424	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001085458.1	+1	validated	p.V644	1.000	454	0%	208	24.5%	38	34.2%	-	-	-	superfamily_ARM repeat
OR9Q1	219956	genome.wustl.edu	37	11	57947713	57947713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005212.3	+1	validated	p.S266F	0.014	278	0%	106	25.5%	0	-	benign(0.024)	deleterious(0.03)	neutral(0.365)	HMMPfam_7tm_1,superfamily_SSF81321
OR1S2	219958	genome.wustl.edu	37	11	57970826	57970826	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004459.1	-1	validated	p.S276	0.000	528	0%	211	23.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5B12	390191	genome.wustl.edu	37	11	58206743	58206743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004733.2	-1	validated	p.E294D	0.604	242	0%	176	13.6%	0	-	benign(0.085)	tolerated(1)	neutral(0.006)	superfamily_SSF81321
ZFP91	80829	genome.wustl.edu	37	11	58384736	58384736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053023.3	+1	reviewed	p.A424T	1.000	148	0%	71	29.6%	14	50%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	superfamily_C2H2 and C2HC zinc fingers
GLYATL2	219970	genome.wustl.edu	37	11	58602289	58602289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145016.3	-1	validated	p.M166I	0.000	153	0%	151	17.9%	0	-	benign(0.001)	tolerated(0.62)	neutral(0.004)	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)
GLYATL2	219970	genome.wustl.edu	37	11	58604608	58604608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145016.3	-1	validated	p.T119I	0.123	686	0%	487	23%	0	-	possibly_damaging(0.476)	tolerated(0.24)	neutral(0.195)	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)
GLYATL1	92292	genome.wustl.edu	37	11	58714590	58714590	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000317391	+1	known	p.L10	0.016	564	0%	305	23.3%	0	-	-	-	-	HMMPfam_Gly_acyl_tr_N
FAM111B	374393	genome.wustl.edu	37	11	58892444	58892444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198947.3	+1	validated	p.E292K	0.008	97	0%	69	29%	6	50%	possibly_damaging(0.867)	tolerated(0.06)	deleterious(0.659)	NULL
FAM111B	374393	genome.wustl.edu	37	11	58893085	58893085	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198947.3	+1	validated	p.W505*	0.853	52	0%	36	11.1%	6	33.3%	-	-	-	superfamily_Trypsin-like serine proteases
FAM111B	374393	genome.wustl.edu	37	11	58893108	58893108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198947.3	+1	validated	p.A513V	0.000	63	0%	37	13.5%	5	40%	benign(0.001)	tolerated(1)	-	superfamily_Trypsin-like serine proteases
OR5AN1	390195	genome.wustl.edu	37	11	59132028	59132028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004729.1	+1	provisional	p.L33M	0.480	399	0%	159	19.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF81321
OR5AN1	390195	genome.wustl.edu	37	11	59132654	59132654	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004729.1	+1	provisional	p.T241	1.000	496	0%	196	16.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5A2	219981	genome.wustl.edu	37	11	59189983	59189983	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001954.1	-1	provisional	p.G148	0.000	176	0.6%	48	18.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4D10	390197	genome.wustl.edu	37	11	59245102	59245102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004705.1	+1	provisional	p.S67F	0.046	318	0%	181	17.1%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4D9	390199	genome.wustl.edu	37	11	59282620	59282620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004711.1	+1	provisional	p.P79T	0.981	412	0.2%	140	20.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OSBP	5007	genome.wustl.edu	37	11	59368060	59368060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002556.2	-1	reviewed	p.T407I	1.000	497	0%	308	22.1%	16	62.5%	benign(0.04)	tolerated(0.06)	neutral(0.325)	HMMPfam_Oxysterol_BP
PATL1	219988	genome.wustl.edu	37	11	59406615	59406615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152716.2	-1	validated	p.L733M	1.000	348	0.3%	362	23.2%	67	29.8%	probably_damaging(0.998)	tolerated(0.2)	deleterious(0.523)	NULL
PATL1	219988	genome.wustl.edu	37	11	59425037	59425037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152716.2	-1	validated	p.P196H	1.000	325	0%	289	27.3%	31	51.6%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_PAT1
MRPL16	54948	genome.wustl.edu	37	11	59577388	59577388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017840.3	-1	reviewed	p.W21R	0.026	107	0%	136	18.4%	56	48.2%	probably_damaging(0.964)	tolerated(0.44)	neutral(0.419)	NULL
MS4A4A	51338	genome.wustl.edu	37	11	60073642	60073642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_148975.1	+1	reviewed	p.G206R	0.985	991	0%	755	17.4%	29	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CD20
MS4A6E	245802	genome.wustl.edu	37	11	60105419	60105419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139249.2	+1	reviewed	p.A118D	0.706	223	0%	132	21.2%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_CD20
MS4A1	931	genome.wustl.edu	37	11	60233603	60233603	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021950.3	+1	reviewed	p.Y182*	1.000	327	0%	252	15.5%	4	0%	-	-	-	HMMPfam_CD20
MS4A1	931	genome.wustl.edu	37	11	60234474	60234474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021950.3	+1	reviewed	p.L206F	0.999	445	0%	203	23.2%	2	0%	benign(0.035)	tolerated(0.29)	neutral(0.031)	HMMPfam_CD20
MS4A12	54860	genome.wustl.edu	37	11	60264835	60264835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017716.2	+1	reviewed	p.T15I	0.000	303	0%	266	22.2%	0	-	probably_damaging(0.996)	tolerated(0.81)	neutral(0.462)	NULL
MS4A15	219995	genome.wustl.edu	37	11	60541379	60541379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098835.1	+1	validated	p.A190T	1.000	275	0%	223	23.8%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_CD20
MS4A10	341116	genome.wustl.edu	37	11	60565954	60565954	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206893.3	+1	validated	p.I230T	0.001	197	0%	122	13.1%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
CCDC86	79080	genome.wustl.edu	37	11	60615400	60615400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024098.3	+1	validated	p.F254L	1.000	89	0%	89	16.9%	45	51.1%	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	NULL
ZP1	22917	genome.wustl.edu	37	11	60638480	60638480	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207341.2	+1	validated	p.E293*	0.020	230	0%	165	31.5%	0	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_ZP
PRPF19	27339	genome.wustl.edu	37	11	60670318	60670318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014502.4	-1	validated	p.Q94H	1.000	131	0%	128	19.5%	180	44.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Prp19
TMEM132A	54972	genome.wustl.edu	37	11	60702764	60702764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017870.3	+1	reviewed	p.A627V	0.977	68	0%	103	34%	23	39.1%	possibly_damaging(0.951)	tolerated(1)	neutral(0.394)	NULL
SLC15A3	51296	genome.wustl.edu	37	11	60705442	60705442	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016582.2	-1	validated	p.G497	1.000	65	0%	68	26.5%	465	36.5%	unknown(0)	-	-	HMMPfam_PTR2,superfamily_MFS general substrate transporter
CD6	923	genome.wustl.edu	37	11	60777067	60777067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006725.3	+1	validated	p.G269W	0.990	41	0%	96	25%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD6	923	genome.wustl.edu	37	11	60777246	60777246	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006725.3	+1	validated	p.Y328*	1.000	49	0%	81	25.9%	10	0%	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD6	923	genome.wustl.edu	37	11	60785340	60785340	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006725.3	+1	validated	p.S564	1.000	89	0%	96	29.2%	20	0%	-	-	-	NULL
CD5	921	genome.wustl.edu	37	11	60890399	60890399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014207.3	+1	validated	p.G374C	0.288	154	0%	120	21.7%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SRCR-like
DDB1	1642	genome.wustl.edu	37	11	61081794	61081794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001923.3	-1	validated	p.E525D	1.000	128	0%	71	21.1%	60	46.6%	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
DDB1	1642	genome.wustl.edu	37	11	61096905	61096905	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001923.3	-1	validated	p.E160V	1.000	207	0%	212	19.8%	29	27.5%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
DAK	26007	genome.wustl.edu	37	11	61106612	61106612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015533.3	+1	reviewed	p.L90M	0.988	19	0%	16	37.5%	34	32.3%	benign(0.426)	deleterious(0)	deleterious(0.583)	HMMPfam_Dak1,superfamily_DAK1/DegV-like
DAK	26007	genome.wustl.edu	37	11	61113017	61113017	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015533.3	+1	reviewed	p.A477	0.914	51	0%	46	23.9%	78	48.7%	-	-	-	HMMPfam_Dak2,superfamily_Citrobacter dihydroxyacetone kinase extra ATP-binding domain
TMEM138	51524	genome.wustl.edu	37	11	61131868	61131868	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016464.4	+1	validated	p.L2	0.075	238	0%	206	20.4%	33	33.3%	-	-	-	NULL
CPSF7	79869	genome.wustl.edu	37	11	61183137	61183137	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024811.3	-1	validated	e7+1	1.000	248	0%	127	15%	1	100%	-	-	-	-
PPP1R32	220004	genome.wustl.edu	37	11	61253293	61253293	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145017.2	+1	validated	p.I199	0.335	77	0%	91	17.6%	4	25%	-	-	-	NULL
DAGLA	747	genome.wustl.edu	37	11	61493545	61493545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006133.1	+1	validated	p.D209E	1.000	50	0%	40	22.5%	1	100%	possibly_damaging(0.772)	tolerated(0.33)	neutral(0.311)	NULL
DAGLA	747	genome.wustl.edu	37	11	61507116	61507116	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006133.1	+1	validated	p.H612	1.000	115	0%	96	19.8%	1	100%	-	-	-	NULL
DAGLA	747	genome.wustl.edu	37	11	61508805	61508805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006133.1	+1	validated	p.R719C	0.968	26	0%	38	13.2%	2	0%	possibly_damaging(0.881)	deleterious(0)	deleterious(0.788)	NULL
DAGLA	747	genome.wustl.edu	37	11	61511846	61511846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006133.1	+1	validated	p.P1005H	0.999	32	0%	38	23.7%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
C11orf9	745	genome.wustl.edu	37	11	61533110	61533110	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127392.1	+1	validated	p.N20	1.000	33	0%	60	23.3%	23	34.7%	-	-	-	NULL
C11orf9	745	genome.wustl.edu	37	11	61541602	61541602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127392.1	+1	validated	p.D427N	1.000	52	0%	61	23%	25	40%	benign(0.268)	tolerated(0.08)	neutral(0.329)	HMMPfam_NDT80_PhoG,superfamily_p53-like transcription factors
FADS1	3992	genome.wustl.edu	37	11	61569896	61569896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013402.4	-1	reviewed	p.Y498C	1.000	162	0%	127	22%	22	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FADS1	3992	genome.wustl.edu	37	11	61570315	61570315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013402.4	-1	reviewed	p.Y471C	1.000	193	0%	139	21.6%	24	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FA_desaturase
FADS2	9415	genome.wustl.edu	37	11	61631197	61631197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004265.2	+1	reviewed	p.V366M	0.994	112	0%	121	22.3%	136	44.8%	possibly_damaging(0.785)	deleterious(0)	deleterious(0.738)	HMMPfam_FA_desaturase
FADS3	3995	genome.wustl.edu	37	11	61646843	61646843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021727.3	-1	reviewed	p.L155I	0.016	66	0%	65	23.1%	40	50%	benign(0.055)	tolerated(0.3)	neutral(0.032)	NULL
BEST1	7439	genome.wustl.edu	37	11	61727035	61727035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000435278	+1	known	p.S379L	0.172	339	0%	363	27%	1	0%	unknown(0)	-	-	NULL
BEST1	7439	genome.wustl.edu	37	11	61730182	61730182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001139443.1	+1	reviewed	p.S459N	0.000	286	0%	254	20.9%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
SCGB1D1	10648	genome.wustl.edu	37	11	61959636	61959636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006552.1	+1	reviewed	p.A55D	0.000	303	0%	122	23%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Uteroglobin,HMMSmart_UTG,superfamily_Secretoglobin
SCGB1D2	10647	genome.wustl.edu	37	11	62010903	62010903	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006551.3	+1	reviewed	p.T66	0.000	361	0%	97	19.6%	1248	45.4%	-	-	-	HMMPfam_Uteroglobin,HMMSmart_UTG,superfamily_Secretoglobin
ASRGL1	80150	genome.wustl.edu	37	11	62124494	62124494	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083926.1	+1	validated	p.A123	0.000	182	0%	261	16.1%	216	19.9%	-	-	-	HMMPfam_Asparaginase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
SCGB1A1	7356	genome.wustl.edu	37	11	62189875	62189875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003357.4	+1	reviewed	p.L80F	0.006	273	0%	174	12.6%	0	-	probably_damaging(0.989)	tolerated(0.14)	deleterious(0.689)	HMMPfam_Uteroglobin,HMMSmart_SM00096,superfamily_Uteroglobin-like
AHNAK	79026	genome.wustl.edu	37	11	62284860	62284860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001620.1	-1	validated	p.E5677K	1.000	151	0%	78	20.5%	144	31.9%	probably_damaging(0.986)	tolerated(0.24)	deleterious(0.472)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62289992	62289992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001620.1	-1	validated	p.P3966L	1.000	490	0.2%	232	18.1%	30	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62290909	62290909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001620.1	-1	validated	p.K3660N	1.000	644	0%	272	25.7%	19	31.5%	probably_damaging(0.958)	tolerated(0.13)	deleterious(0.654)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62292348	62292348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001620.1	-1	validated	p.V3181I	0.733	537	0.4%	246	18.3%	20	40%	benign(0.002)	tolerated(0.81)	neutral(0.001)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62294986	62294986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001620.1	-1	validated	p.K2301N	1.000	435	0%	225	19.1%	8	50%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62300061	62300061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001620.1	-1	validated	p.V610L	0.995	114	0%	110	18.2%	6	33.3%	possibly_damaging(0.59)	tolerated(0.66)	neutral(0.206)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62300697	62300697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001620.1	-1	validated	p.D398Y	0.013	154	0%	99	23.2%	3	33.3%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62300848	62300848	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001620.1	-1	validated	p.L347	0.039	48	0%	33	12.1%	2	0%	-	-	-	NULL
TUT1	64852	genome.wustl.edu	37	11	62343537	62343537	+	Missense_Mutation	SNP	C	C	T	rs150786326	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022830.2	-1	reviewed	p.A552T	1.000	25	0%	19	31.6%	26	30.7%	possibly_damaging(0.862)	tolerated(0.09)	deleterious(0.629)	superfamily_PAP/OAS1 substrate-binding domain
MTA2	9219	genome.wustl.edu	37	11	62363977	62363977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004739.2	-1	reviewed	p.V304F	1.000	388	0%	300	25%	98	42.8%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SANT,HMMPfam_Myb_DNA-binding
EML3	256364	genome.wustl.edu	37	11	62370660	62370660	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153265.2	-1	validated	p.W773G	1.000	155	0.6%	174	10.3%	100	33%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
EML3	256364	genome.wustl.edu	37	11	62371473	62371473	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153265.2	-1	validated	p.I704	1.000	257	0%	310	14.5%	75	24%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
EML3	256364	genome.wustl.edu	37	11	62378920	62378920	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000394776	-1	known	p.H51Y	0.001	63	0%	66	28.8%	14	14.2%	-	-	-	NULL
GANAB	23193	genome.wustl.edu	37	11	62402314	62402314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198335.2	-1	validated	p.H180R	1.000	171	0%	125	24%	73	39.7%	possibly_damaging(0.923)	deleterious(0.01)	deleterious(0.778)	NULL
INTS5	80789	genome.wustl.edu	37	11	62415821	62415821	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030628.1	-1	provisional	p.N577	1.000	58	0%	65	27.7%	32	40.6%	-	-	-	NULL
C11orf48	79081	genome.wustl.edu	37	11	62437124	62437124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024099.3	-1	validated	p.S101N	0.994	242	0%	180	22.2%	15	40%	possibly_damaging(0.602)	deleterious(0)	deleterious(0.653)	NULL
BSCL2	26580	genome.wustl.edu	37	11	62458098	62458098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122955.2	-1	reviewed	p.P407H	0.458	133	0%	148	16.9%	339	40.7%	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	NULL
HNRNPUL2	221092	genome.wustl.edu	37	11	62490074	62490074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001079559.1	-1	provisional	p.A365V	1.000	259	0%	225	10.7%	97	17.5%	probably_damaging(0.959)	tolerated(0.43)	neutral(0.416)	HMMPfam_SPRY,HMMSmart_SPRY
TAF6L	10629	genome.wustl.edu	37	11	62550279	62550279	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006473.2	+1	reviewed	p.L314	1.000	127	0%	139	20.1%	16	56.2%	-	-	-	HMMPfam_DUF1546
TMEM179B	374395	genome.wustl.edu	37	11	62556623	62556623	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199337.2	+1	validated	p.L75	1.000	187	0%	270	22.2%	145	37.2%	-	-	-	NULL
TMEM223	79064	genome.wustl.edu	37	11	62558156	62558156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080501.2	-1	validated	p.T183N	1.000	147	0%	166	28.9%	81	30.8%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
WDR74	54663	genome.wustl.edu	37	11	62601270	62601270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018093.2	-1	validated	p.E305D	1.000	254	0%	233	11.6%	92	31.5%	possibly_damaging(0.903)	tolerated(0.57)	neutral(0.364)	superfamily_WD40 repeat-like
WDR74	54663	genome.wustl.edu	37	11	62601968	62601968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018093.2	-1	validated	p.R217H	1.000	60	0%	50	28%	140	43.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
SLC3A2	6520	genome.wustl.edu	37	11	62649447	62649447	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000422606	+1	known	p.*154R	0.976	318	0%	251	11.6%	217	20.7%	-	-	-	NULL
SLC3A2	6520	genome.wustl.edu	37	11	62651929	62651929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012661.1	+1	reviewed	p.D363N	0.750	631	0%	464	20%	232	40.9%	benign(0.222)	tolerated(0.19)	neutral(0.072)	HMMSmart_SM00642,superfamily_(Trans)glycosidases
SLC22A6	9356	genome.wustl.edu	37	11	62747308	62747308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004790.3	-1	reviewed	p.V384M	0.212	87	0%	57	28.1%	0	-	possibly_damaging(0.671)	deleterious(0.05)	deleterious(0.583)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RARRES3	5920	genome.wustl.edu	37	11	63312126	63312126	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004585.3	+1	validated	p.F51Y	0.000	98	0%	67	26.9%	1306	42.8%	possibly_damaging(0.772)	tolerated(0.33)	neutral(0.311)	NULL
HRASLS2	54979	genome.wustl.edu	37	11	63320485	63320485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017878.1	-1	provisional	p.A147V	0.000	81	0%	85	18.8%	2	100%	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
C11orf84	144097	genome.wustl.edu	37	11	63594579	63594579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138471.1	+1	predicted	p.A372T	0.000	70	0%	69	31.9%	28	39.2%	benign(0.001)	tolerated(0.22)	neutral(0.042)	NULL
MARK2	2011	genome.wustl.edu	37	11	63666538	63666538	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000513765	+1	known	p.A147T	0.999	419	0%	340	22.6%	22	36.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MARK2	2011	genome.wustl.edu	37	11	63672325	63672325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039469.2	+1	reviewed	p.P549S	0.999	73	0%	108	23.1%	21	57.1%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
MARK2	2011	genome.wustl.edu	37	11	63675746	63675746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039469.2	+1	reviewed	p.P626H	1.000	120	0.8%	185	14.6%	30	13.3%	probably_damaging(0.988)	deleterious(0.05)	deleterious(0.783)	NULL
RCOR2	283248	genome.wustl.edu	37	11	63680352	63680352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173587.3	-1	validated	p.R320H	0.999	126	0%	206	12.6%	20	45%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RCOR2	283248	genome.wustl.edu	37	11	63682377	63682377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173587.3	-1	validated	p.E105D	1.000	75	0%	109	27.5%	12	58.3%	possibly_damaging(0.663)	deleterious(0)	deleterious(0.679)	NULL
STIP1	10963	genome.wustl.edu	37	11	63963209	63963209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006819.2	+1	validated	p.P199H	0.985	361	0%	356	20.5%	144	42.3%	benign(0.007)	deleterious(0.01)	neutral(0.406)	superfamily_SSF48452
STIP1	10963	genome.wustl.edu	37	11	63963265	63963265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006819.2	+1	validated	p.L218I	1.000	456	0%	474	22.6%	159	44.6%	probably_damaging(0.968)	tolerated(0.23)	neutral(0.451)	superfamily_SSF48452
FERMT3	83706	genome.wustl.edu	37	11	63978623	63978623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178443.2	+1	reviewed	p.S165I	0.998	36	0%	29	17.2%	32	0%	benign(0.002)	tolerated(0.12)	neutral(0.261)	HMMSmart_SM00295
TRPT1	83707	genome.wustl.edu	37	11	63991770	63991770	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033678.3	-1	validated	p.P182	0.993	124	0%	128	21.9%	148	32.4%	-	-	-	HMMPfam_PTS_2-RNA
TRPT1	83707	genome.wustl.edu	37	11	63992118	63992118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033678.3	-1	validated	p.F133L	1.000	203	0%	202	26.7%	142	31.6%	benign(0.12)	deleterious(0.02)	neutral(0.393)	HMMPfam_PTS_2-RNA
PLCB3	5331	genome.wustl.edu	37	11	64021918	64021918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000932.2	+1	reviewed	p.R44H	0.923	117	0%	135	14.8%	10	30%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PLCB3	5331	genome.wustl.edu	37	11	64024146	64024146	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000932.2	+1	reviewed	p.L308	1.000	165	0%	220	21.8%	21	47.6%	-	-	-	HMMPfam_efhand_like,superfamily_EF-hand
PLCB3	5331	genome.wustl.edu	37	11	64026072	64026072	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000932.2	+1	reviewed	p.G380	1.000	66	0%	61	21.3%	12	33.3%	-	-	-	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
PLCB3	5331	genome.wustl.edu	37	11	64029078	64029078	+	Silent	SNP	G	G	A	rs138145158	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000932.2	+1	reviewed	p.S618	0.021	140	0.7%	154	18.2%	16	50%	-	-	-	HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_PLC-like phosphodiesterases
CCDC88B	283234	genome.wustl.edu	37	11	64120586	64120586	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032251.5	+1	reviewed	p.G1187	0.971	58	0%	67	17.9%	4	0%	-	-	-	NULL
PYGM	5837	genome.wustl.edu	37	11	64527193	64527193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005609.2	-1	reviewed	p.V60M	1.000	205	0%	171	16.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF53756
MAP4K2	5871	genome.wustl.edu	37	11	64557391	64557391	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004579.2	-1	reviewed	p.G763	0.511	33	0%	31	12.9%	22	45.4%	-	-	-	HMMPfam_CNH,HMMSmart_CNH
MAP4K2	5871	genome.wustl.edu	37	11	64557698	64557698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004579.2	-1	reviewed	p.A737V	0.994	151	0%	224	19.2%	19	15.7%	benign(0.025)	tolerated(0.42)	neutral(0.015)	HMMPfam_CNH,HMMSmart_CNH
MAP4K2	5871	genome.wustl.edu	37	11	64570127	64570127	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004579.2	-1	reviewed	e3-2	1.000	66	0%	79	21.5%	0	-	-	-	-	-
MEN1	4221	genome.wustl.edu	37	11	64577254	64577254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000244.3	-1	reviewed	p.G110W	0.982	169	0%	127	30.7%	30	26.6%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Menin
CDC42BPG	55561	genome.wustl.edu	37	11	64597448	64597448	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017525.2	-1	validated	p.S1154	0.909	24	0%	20	25%	5	80%	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
CDC42BPG	55561	genome.wustl.edu	37	11	64602404	64602404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017525.2	-1	validated	p.L698M	1.000	102	0%	127	24.4%	3	100%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
CDC42BPG	55561	genome.wustl.edu	37	11	64606182	64606182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017525.2	-1	validated	p.R357W	0.001	51	2%	63	30.2%	1	100%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	HMMSmart_SM00133,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_C
ATG2A	23130	genome.wustl.edu	37	11	64666131	64666131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015104.2	-1	validated	p.P1550S	1.000	30	0%	42	33.3%	23	21.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATG2A	23130	genome.wustl.edu	37	11	64679398	64679398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015104.2	-1	validated	p.L382I	0.921	122	0%	123	25.2%	13	38.4%	benign(0.313)	tolerated(0.09)	neutral(0.394)	NULL
PPP2R5B	5526	genome.wustl.edu	37	11	64698011	64698011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006244.3	+1	reviewed	p.V281I	1.000	276	0%	294	20.7%	19	26.3%	benign(0.152)	tolerated(0.08)	neutral(0.314)	HMMPfam_B56
C11orf85	283129	genome.wustl.edu	37	11	64722234	64722234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037225.1	-1	predicted	p.L48M	0.996	497	0%	213	24.9%	0	-	possibly_damaging(0.634)	tolerated(0.17)	neutral(0.281)	NULL
SNX15	29907	genome.wustl.edu	37	11	64802556	64802556	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013306.3	+1	reviewed	p.E133V	0.566	23	0%	41	19.5%	8	37.5%	unknown(0)	-	-	NULL
SAC3D1	29901	genome.wustl.edu	37	11	64811854	64811854	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013299.3	+1	validated	p.C244*	0.915	35	0%	36	27.8%	102	30.3%	-	-	-	HMMPfam_SAC3_GANP
NAALADL1	10004	genome.wustl.edu	37	11	64813959	64813959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005468.2	-1	validated	p.A547S	1.000	445	0%	509	13.8%	3	0%	unknown(0)	tolerated(1)	-	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases
NAALADL1	10004	genome.wustl.edu	37	11	64815473	64815473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005468.2	-1	validated	p.V466I	0.035	50	0%	66	22.7%	0	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases
LOC100131416	100131416	genome.wustl.edu	37	11	64878064	64878064	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001716064.2	-1	model	e3-1	1.000	103	0%	151	21.2%	189	28%	benign(0.192)	deleterious(0)	neutral(0.463)	-
ZNHIT2	741	genome.wustl.edu	37	11	64883976	64883976	+	Missense_Mutation	SNP	G	G	A	rs184318096	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014205.2	-1	validated	p.R384W	0.997	60	0%	48	12.5%	48	18.7%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SYVN1	84447	genome.wustl.edu	37	11	64897273	64897273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172230.2	-1	reviewed	p.R508H	1.000	94	0%	104	22.1%	45	42.2%	unknown(0)	tolerated(0.14)	-	NULL
SYVN1	84447	genome.wustl.edu	37	11	64897844	64897844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172230.2	-1	reviewed	p.Q371H	0.998	102	0%	95	26.3%	13	7.6%	unknown(0)	tolerated(0.2)	-	NULL
SYVN1	84447	genome.wustl.edu	37	11	64898503	64898503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172230.2	-1	reviewed	p.P277S	1.000	234	0%	229	12.2%	64	14%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SLC22A20	440044	genome.wustl.edu	37	11	64985150	64985150	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004326.4	+1	validated	p.S210	1.000	58	0%	74	29.7%	0	-	-	-	-	superfamily_MFS general substrate transporter
SLC22A20	440044	genome.wustl.edu	37	11	64989997	64989997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004326.4	+1	validated	p.S231R	0.983	233	0%	173	26.6%	0	-	-	-	-	NULL
DPF2	5977	genome.wustl.edu	37	11	65108884	65108884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006268.3	+1	reviewed	p.L106M	1.000	172	0%	155	13.5%	23	21.7%	possibly_damaging(0.882)	tolerated(0.21)	neutral(0.388)	NULL
DPF2	5977	genome.wustl.edu	37	11	65108959	65108959	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006268.3	+1	reviewed	p.R131*	1.000	187	0%	169	26%	29	3.4%	-	-	-	NULL
SLC25A45	283130	genome.wustl.edu	37	11	65143945	65143945	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000332723	-1	known	p.C241*	0.999	181	0%	126	22.2%	7	0%	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	NULL
SCYL1	57410	genome.wustl.edu	37	11	65302737	65302737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020680.3	+1	reviewed	p.L424I	1.000	211	0%	212	13.2%	137	20.4%	possibly_damaging(0.812)	tolerated(0.59)	neutral(0.310)	superfamily_ARM repeat
PCNXL3	399909	genome.wustl.edu	37	11	65401704	65401704	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032223.2	+1	validated	p.S1526	0.044	35	0%	35	37.1%	37	40.5%	-	-	-	NULL
PCNXL3	399909	genome.wustl.edu	37	11	65402085	65402085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032223.2	+1	validated	p.G1593E	1.000	81	0%	93	31.2%	29	34.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pecanex_C
PCNXL3	399909	genome.wustl.edu	37	11	65402529	65402529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032223.2	+1	validated	p.D1631N	1.000	170	0%	213	26.8%	60	38.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pecanex_C
KAT5	10524	genome.wustl.edu	37	11	65482327	65482327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182710.1	+1	reviewed	p.E325D	1.000	404	0%	289	20.4%	70	35.7%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat)
AP5B1	91056	genome.wustl.edu	37	11	65545611	65545611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138368.3	-1	validated	p.L728I	0.987	46	0%	47	25.5%	26	34.6%	-	-	-	NULL
AP5B1	91056	genome.wustl.edu	37	11	65547190	65547190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138368.3	-1	validated	p.E201D	0.018	33	0%	46	15.2%	4	25%	-	-	-	NULL
CFL1	1072	genome.wustl.edu	37	11	65623470	65623470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005507.2	-1	validated	p.A83T	1.000	339	0.3%	433	20.8%	2052	33.4%	benign(0.138)	deleterious(0)	neutral(0.456)	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
MUS81	80198	genome.wustl.edu	37	11	65629692	65629692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025128.4	+1	validated	p.G154D	0.205	191	0%	293	22.9%	15	60%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	NULL
EFEMP2	30008	genome.wustl.edu	37	11	65635525	65635525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016938.3	-1	reviewed	p.R326H	1.000	136	0%	150	28.7%	26	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_EGF,HMMPfam_EGF_CA
CTSW	1521	genome.wustl.edu	37	11	65650596	65650596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001335.3	+1	reviewed	p.P268S	0.004	154	0%	128	27.3%	57	0%	benign(0.146)	tolerated(0.47)	neutral(0.024)	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
FIBP	9158	genome.wustl.edu	37	11	65653099	65653099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198897.1	-1	reviewed	p.R183H	1.000	284	0%	304	22%	195	39.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FIBP
DRAP1	10589	genome.wustl.edu	37	11	65687860	65687860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006442.3	+1	reviewed	p.L86M	0.998	66	0%	87	27.6%	379	30.6%	possibly_damaging(0.892)	deleterious(0.05)	deleterious(0.697)	superfamily_Histone-fold
CATSPER1	117144	genome.wustl.edu	37	11	65792903	65792903	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053054.3	-1	reviewed	p.G316	0.000	966	0.1%	612	23.7%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
PACS1	55690	genome.wustl.edu	37	11	65978705	65978705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018026.2	+1	reviewed	p.A212V	1.000	234	0%	128	18.8%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KLC2	64837	genome.wustl.edu	37	11	66029313	66029313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134775.1	+1	validated	p.R110H	1.000	60	0%	66	33.3%	21	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rab5-bind
YIF1A	10897	genome.wustl.edu	37	11	66052910	66052910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020470.2	-1	validated	p.V195M	1.000	48	0%	62	21%	286	42.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_YIF1
CD248	57124	genome.wustl.edu	37	11	66082857	66082857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020404.2	-1	validated	p.P548S	0.047	456	0%	451	17.3%	24	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CD248	57124	genome.wustl.edu	37	11	66082973	66082973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020404.2	-1	validated	p.P509H	0.802	376	0.3%	394	17%	34	0%	benign(0.282)	deleterious(0)	deleterious(0.531)	NULL
RIN1	9610	genome.wustl.edu	37	11	66102887	66102887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004292.2	-1	validated	p.L180M	1.000	121	0%	128	23.4%	12	41.6%	probably_damaging(0.964)	tolerated(0.15)	deleterious(0.647)	NULL
LOC100128074	100128074	genome.wustl.edu	37	11	66114516	66114516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001716221.1	+1	model	p.H105Y	0.998	20	0%	31	48.4%	8	37.5%	-	-	-	NULL
NPAS4	266743	genome.wustl.edu	37	11	66192682	66192682	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178864.3	+1	validated	p.D774V	1.000	102	0%	108	17.6%	0	-	benign(0.007)	deleterious(0.04)	neutral(0.349)	NULL
PELI3	246330	genome.wustl.edu	37	11	66235658	66235658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145065.2	+1	validated	p.R20Q	0.358	81	0%	142	19%	3	100%	benign(0.144)	tolerated(0.19)	neutral(0.062)	NULL
BBS1	582	genome.wustl.edu	37	11	66288807	66288807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024649.4	+1	reviewed	p.A264T	0.860	115	0%	87	29.9%	15	46.6%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
CCDC87	55231	genome.wustl.edu	37	11	66358213	66358213	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018219.2	-1	validated	p.S758	0.000	218	0%	262	18.7%	1	100%	-	-	-	NULL
CCDC87	55231	genome.wustl.edu	37	11	66358798	66358798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018219.2	-1	validated	p.M563I	0.000	323	0%	381	20.2%	1	0%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
CCDC87	55231	genome.wustl.edu	37	11	66359536	66359536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018219.2	-1	validated	p.E317D	0.852	33	0%	46	23.9%	0	-	possibly_damaging(0.667)	tolerated(0.06)	deleterious(0.558)	NULL
SPTBN2	6712	genome.wustl.edu	37	11	66463896	66463896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006946.2	-1	reviewed	p.R1377H	1.000	82	0%	147	15.6%	25	24%	probably_damaging(0.974)	deleterious(0.04)	deleterious(0.765)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN2	6712	genome.wustl.edu	37	11	66466916	66466916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006946.2	-1	reviewed	p.A1246V	0.657	169	0%	202	20.3%	16	50%	possibly_damaging(0.815)	deleterious(0.01)	deleterious(0.713)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN2	6712	genome.wustl.edu	37	11	66472348	66472348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006946.2	-1	reviewed	p.R800Q	1.000	20	5%	26	30.8%	6	33.3%	possibly_damaging(0.707)	tolerated(0.38)	neutral(0.273)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
C11orf80	79703	genome.wustl.edu	37	11	66512374	66512374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024650.3	+1	validated	p.A54V	0.878	4	0.000	12	0.500	1	0%	unknown(0)	deleterious(0)	-	NULL
C11orf80	79703	genome.wustl.edu	37	11	66583552	66583552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024650.3	+1	validated	p.Q406H	0.000	541	0%	269	22.7%	13	46.1%	possibly_damaging(0.653)	deleterious(0.01)	deleterious(0.635)	NULL
SYT12	91683	genome.wustl.edu	37	11	66816093	66816093	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177963.3	+1	reviewed	p.S377	0.491	53	0%	44	25%	0	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
KDM2A	22992	genome.wustl.edu	37	11	66947577	66947577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012308.2	+1	reviewed	p.D24Y	1.000	420	0%	133	9.8%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KDM2A	22992	genome.wustl.edu	37	11	66995540	66995540	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012308.2	+1	reviewed	p.Y330	1.000	543	0.2%	492	22.2%	4	25%	-	-	-	superfamily_Clavaminate synthase-like
ADRBK1	156	genome.wustl.edu	37	11	67048603	67048603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001619.3	+1	reviewed	p.R199C	1.000	99	0%	102	21.6%	62	19.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
ADRBK1	156	genome.wustl.edu	37	11	67050271	67050271	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001619.3	+1	reviewed	p.D403	1.000	71	0%	77	22.1%	104	27.8%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ANKRD13D	338692	genome.wustl.edu	37	11	67069016	67069016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207354.2	+1	validated	p.S382N	0.994	40	0%	37	21.6%	61	27.8%	benign(0.202)	tolerated(0.35)	neutral(0.040)	NULL
SSH3	54961	genome.wustl.edu	37	11	67074886	67074886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017857.3	+1	validated	p.P194H	0.992	105	0%	79	22.8%	43	37.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POLD4	57804	genome.wustl.edu	37	11	67120167	67120167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021173.3	-1	validated	p.Q98H	0.994	19	0%	24	25%	139	24.4%	probably_damaging(0.983)	tolerated(0.07)	deleterious(0.748)	HMMPfam_DNA_pol_delta_4
PPP1CA	5499	genome.wustl.edu	37	11	67168665	67168665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008709.1	-1	reviewed	p.G32C	1.000	113	0%	131	24.4%	335	42%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
CARNS1	57571	genome.wustl.edu	37	11	67191900	67191900	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020811.1	+1	validated	p.N771T	0.923	34	0%	45	35.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Glutathione synthetase ATP-binding domain-like
CORO1B	57175	genome.wustl.edu	37	11	67207718	67207718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018070.1	-1	validated	p.R293Q	1.000	208	0%	189	19%	250	46.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like,HMMPfam_DUF1900
AIP	9049	genome.wustl.edu	37	11	67257544	67257544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003977.2	+1	reviewed	p.W168C	1.000	76	0%	96	10.4%	141	9.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF48452
PITPNM1	9600	genome.wustl.edu	37	11	67260519	67260519	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004910.2	-1	validated	p.I1119	1.000	73	1.4%	93	22.6%	95	32.6%	-	-	-	HMMPfam_LNS2,HMMSmart_SM00775,superfamily_HAD-like
PITPNM1	9600	genome.wustl.edu	37	11	67262946	67262946	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004910.2	-1	validated	p.Q815H	0.999	17	0%	29	20.7%	44	38.6%	possibly_damaging(0.529)	deleterious(0.02)	deleterious(0.561)	HMMPfam_DDHD
PITPNM1	9600	genome.wustl.edu	37	11	67269406	67269406	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004910.2	-1	validated	p.A189	1.000	70	0%	97	26.8%	27	40.7%	-	-	-	HMMPfam_IP_trans,superfamily_Bet v1-like
PITPNM1	9600	genome.wustl.edu	37	11	67271627	67271627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004910.2	-1	validated	p.L9M	1.000	49	0%	38	15.8%	5	60%	benign(0.136)	deleterious(0.04)	neutral(0.360)	HMMPfam_IP_trans,superfamily_Bet v1-like
GSTP1	2950	genome.wustl.edu	37	11	67352613	67352613	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000398606	+1	known	p.L79	0.076	136	0%	147	17.7%	3112	42.2%	-	-	-	superfamily_GST_C_like
NDUFV1	4723	genome.wustl.edu	37	11	67375937	67375937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007103.3	+1	reviewed	p.R48H	1.000	252	0%	308	26.9%	121	43.8%	unknown(0)	deleterious(0)	-	NULL
TBX10	347853	genome.wustl.edu	37	11	67400561	67400561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005995.3	-1	provisional	p.S188F	1.000	327	0%	378	20.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
TBX10	347853	genome.wustl.edu	37	11	67402336	67402336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005995.3	-1	provisional	p.D110N	0.978	57	0%	84	25%	0	-	probably_damaging(0.979)	tolerated(0.05)	deleterious(0.767)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
ALDH3B2	222	genome.wustl.edu	37	11	67433088	67433088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000695.3	-1	reviewed	p.P125H	0.984	53	0%	63	23.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldedh,superfamily_ALDH-like
ALDH3B2	222	genome.wustl.edu	37	11	67434139	67434139	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000695.3	-1	reviewed	p.I19	1.000	173	0%	233	20.2%	0	-	-	-	-	superfamily_ALDH-like
UNC93B1	81622	genome.wustl.edu	37	11	67764210	67764210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000227471	-1	known	p.D317N	1.000	64	0%	90	24.4%	190	42.6%	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	NULL
CHKA	1119	genome.wustl.edu	37	11	67837655	67837655	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001277.2	-1	reviewed	e6+1	1.000	156	0%	115	19.1%	0	-	-	-	-	-
CHKA	1119	genome.wustl.edu	37	11	67842196	67842196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001277.2	-1	reviewed	p.E206D	1.000	243	0%	71	19.7%	19	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)
SUV420H1	51111	genome.wustl.edu	37	11	67925466	67925466	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017635.3	-1	reviewed	p.R783*	1.000	580	0.2%	292	18.5%	9	22.2%	-	-	-	NULL
LRP5	4041	genome.wustl.edu	37	11	68178923	68178923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002335.2	+1	reviewed	p.W780R	1.000	59	0%	40	27.5%	51	39.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
LRP5	4041	genome.wustl.edu	37	11	68193517	68193517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002335.2	+1	reviewed	p.L1167I	1.000	49	0%	55	30.9%	78	43.5%	possibly_damaging(0.916)	tolerated(0.34)	neutral(0.390)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
MTL5	9633	genome.wustl.edu	37	11	68483395	68483395	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004923.3	-1	reviewed	p.C310*	1.000	227	0.4%	112	15.2%	1	100%	-	-	-	HMMPfam_CXC
MRPL21	219927	genome.wustl.edu	37	11	68660241	68660241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000447977	-1	known	p.P224T	0.000	109	0%	48	31.2%	5	40%	unknown(0)	-	-	NULL
MRGPRF	116535	genome.wustl.edu	37	11	68773544	68773544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098515.1	-1	validated	p.F78L	1.000	46	0%	42	26.2%	11	0%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TPCN2	219931	genome.wustl.edu	37	11	68838829	68838829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139075.3	+1	reviewed	p.L301M	1.000	184	0%	182	12.1%	9	33.3%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	HMMPfam_Ion_trans,superfamily_SSF81324
TPCN2	219931	genome.wustl.edu	37	11	68848947	68848947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139075.3	+1	reviewed	p.R557C	1.000	91	0%	78	25.6%	18	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
MYEOV	26579	genome.wustl.edu	37	11	69063727	69063727	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138768.2	+1	validated	p.G270	0.000	99	0%	93	18.3%	21	71.4%	-	-	-	NULL
ANO1	55107	genome.wustl.edu	37	11	70028612	70028612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018043.5	+1	validated	p.F803S	1.000	114	0%	89	25.8%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF590
CTTN	2017	genome.wustl.edu	37	11	70281162	70281162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005231.3	+1	reviewed	p.D516V	1.000	73	0%	77	18.2%	154	15.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
KRTAP5-9	3846	genome.wustl.edu	37	11	71259945	71259945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005553.3	+1	validated	p.S81N	0.194	217	0%	168	26.2%	0	-	unknown(0)	tolerated(0.18)	-	PatternScan_VWFC_1,PatternScan_ZN2_CY6_FUNGAL_1
ENSG00000187811	0	genome.wustl.edu	37	11	71316496	71316496	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000343767	-1	known	p.R47	1.000	106	0%	158	20.9%	0	-	-	-	-	NULL
RNF121	55298	genome.wustl.edu	37	11	71671806	71671806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018320.4	+1	reviewed	p.A38T	1.000	76	0%	42	19%	19	36.8%	benign(0.389)	tolerated(0.71)	neutral(0.126)	NULL
NUMA1	4926	genome.wustl.edu	37	11	71715067	71715067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006185.2	-1	validated	p.A2068S	0.019	84	0%	64	23.4%	362	36.1%	benign(0.006)	tolerated(0.18)	neutral(0.056)	NULL
LAMTOR1	55004	genome.wustl.edu	37	11	71809456	71809456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017907.1	-1	provisional	p.R91H	0.999	52	0%	53	26.4%	280	37.1%	unknown(0)	-	-	NULL
INPPL1	3636	genome.wustl.edu	37	11	71942194	71942194	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001567.3	+1	reviewed	p.R486	0.912	114	0%	113	33.6%	38	47.3%	-	-	-	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
INPPL1	3636	genome.wustl.edu	37	11	71942581	71942581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001567.3	+1	reviewed	p.L513M	1.000	83	0%	86	29.1%	59	50.8%	probably_damaging(0.995)	tolerated(0.09)	deleterious(0.754)	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
INPPL1	3636	genome.wustl.edu	37	11	71948243	71948243	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001567.3	+1	reviewed	p.A985	1.000	47	0%	61	19.7%	103	44.6%	-	-	-	NULL
ARHGEF17	9828	genome.wustl.edu	37	11	73074857	73074857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014786.3	+1	validated	p.A1771V	0.556	125	0%	208	20.7%	8	25%	benign(0)	deleterious(0.04)	neutral(0.349)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
ARHGEF17	9828	genome.wustl.edu	37	11	73076913	73076913	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014786.3	+1	validated	p.H1972	0.969	56	0%	74	24.3%	22	31.8%	-	-	-	NULL
RAB6A	5870	genome.wustl.edu	37	11	73418518	73418518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002869.4	-1	validated	p.L148M	1.000	903	0%	514	23.3%	52	38.4%	benign(0.008)	tolerated(0.21)	neutral(0.044)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
UCP2	7351	genome.wustl.edu	37	11	73688976	73688976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003355.2	-1	reviewed	p.G98S	1.000	71	0%	64	23.4%	494	41%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
C2CD3	26005	genome.wustl.edu	37	11	73809119	73809119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015531.4	-1	validated	p.L972I	0.000	250	0.4%	85	15.3%	2	50%	possibly_damaging(0.926)	tolerated(0.51)	neutral(0.384)	NULL
C2CD3	26005	genome.wustl.edu	37	11	73809211	73809211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015531.4	-1	validated	p.G941V	1.000	198	0%	53	26.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPME1	51400	genome.wustl.edu	37	11	73957221	73957221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016147.1	+1	provisional	p.C312Y	1.000	465	0%	228	19.7%	51	45%	possibly_damaging(0.894)	deleterious(0.01)	deleterious(0.758)	superfamily_alpha/beta-Hydrolases
P4HA3	283208	genome.wustl.edu	37	11	73997411	73997411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182904.3	-1	reviewed	p.R265S	1.000	175	0%	64	20.3%	0	-	benign(0.086)	tolerated(0.16)	neutral(0.066)	superfamily_TPR-like
LOC100287896	100287896	genome.wustl.edu	37	11	74208702	74208702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343118.1	+1	model	p.T251N	0.326	312	0%	317	15.8%	7	42.8%	-	-	-	NULL
POLD3	10714	genome.wustl.edu	37	11	74336588	74336588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006591.1	+1	validated	p.P290H	1.000	84	0%	95	13.7%	8	50%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_CDC27
OR2AT4	341152	genome.wustl.edu	37	11	74800540	74800540	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005285.1	-1	provisional	p.T73	0.002	572	0%	321	13.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SLCO2B1	11309	genome.wustl.edu	37	11	74876954	74876954	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007256.3	+1	validated	p.H136	1.000	105	0%	69	26.1%	7	0%	-	-	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
SLCO2B1	11309	genome.wustl.edu	37	11	74899246	74899246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007256.3	+1	validated	p.Q346H	0.953	161	0%	97	24.7%	12	16.6%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_OATP,superfamily_MFS general substrate transporter
ARRB1	408	genome.wustl.edu	37	11	74977255	74977255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004041.3	-1	validated	p.K403N	1.000	315	0.3%	251	21.1%	25	16%	benign(0.028)	tolerated(0.36)	neutral(0.022)	NULL
ARRB1	408	genome.wustl.edu	37	11	74984002	74984002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004041.3	-1	validated	p.R312H	1.000	223	0%	178	32.6%	9	33.3%	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	HMMPfam_Arrestin_C,superfamily_E set domains
RPS3	6188	genome.wustl.edu	37	11	75111792	75111792	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005.3	+1	reviewed	p.L29	1.000	419	0%	414	14.5%	2015	19.4%	-	-	-	superfamily_Prokaryotic type KH domain (KH-domain type II)
GDPD5	81544	genome.wustl.edu	37	11	75161022	75161022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030792.6	-1	validated	p.L128M	1.000	27	0%	29	24.1%	7	71.4%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
MAP6	4135	genome.wustl.edu	37	11	75298157	75298157	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033063.1	-1	reviewed	p.R797*	1.000	257	0%	273	23.4%	4	0%	-	-	-	NULL
MAP6	4135	genome.wustl.edu	37	11	75298580	75298580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033063.1	-1	reviewed	p.A656T	0.021	473	0%	411	26.3%	2	0%	probably_damaging(0.996)	tolerated(0.35)	deleterious(0.482)	NULL
DGAT2	84649	genome.wustl.edu	37	11	75508212	75508212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032564.3	+1	validated	p.P215H	1.000	144	0%	88	17%	1	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_DAGAT
UVRAG	7405	genome.wustl.edu	37	11	75694527	75694527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003369.3	+1	reviewed	p.H266Y	1.000	242	0.4%	180	19.4%	15	33.3%	benign(0.202)	tolerated(0.07)	neutral(0.339)	NULL
UVRAG	7405	genome.wustl.edu	37	11	75852428	75852428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003369.3	+1	reviewed	p.R691C	1.000	115	0%	62	27.4%	36	38.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WNT11	7481	genome.wustl.edu	37	11	75902891	75902891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004626.2	-1	reviewed	p.A203T	0.999	32	0%	49	18.4%	1	0%	benign(0.153)	tolerated(0.47)	neutral(0.025)	HMMPfam_wnt,HMMSmart_WNT1
C11orf30	56946	genome.wustl.edu	37	11	76255814	76255814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020193.3	+1	validated	p.P1074L	1.000	425	0%	145	20%	7	42.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
OMP	4975	genome.wustl.edu	37	11	76814231	76814231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006189.1	+1	reviewed	p.D116Y	0.996	59	0%	76	25%	0	-	possibly_damaging(0.916)	deleterious(0.01)	deleterious(0.772)	HMMPfam_Olfactory_mark,superfamily_Olfactory_marker
CAPN5	726	genome.wustl.edu	37	11	76825334	76825334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004055.4	+1	reviewed	p.A185T	1.000	166	0%	144	17.4%	2	50%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
CAPN5	726	genome.wustl.edu	37	11	76826541	76826541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004055.4	+1	reviewed	p.G267D	1.000	29	0%	23	21.7%	1	100%	possibly_damaging(0.832)	tolerated(0.13)	deleterious(0.570)	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
CAPN5	726	genome.wustl.edu	37	11	76834862	76834862	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004055.4	+1	reviewed	p.L623	0.989	74	0%	90	26.7%	11	18.1%	-	-	-	NULL
MYO7A	4647	genome.wustl.edu	37	11	76867920	76867920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000260.3	+1	reviewed	p.A202V	1.000	62	0%	51	31.4%	1	0%	unknown(0)	deleterious(0)	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO7A	4647	genome.wustl.edu	37	11	76903162	76903162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000260.3	+1	reviewed	p.K1331E	1.000	92	0%	65	20%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FERM_N,HMMSmart_SM00295
GDPD4	220032	genome.wustl.edu	37	11	76940274	76940274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182833.1	-1	provisional	p.P465S	0.997	211	0%	93	21.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
RSF1	51773	genome.wustl.edu	37	11	77451875	77451875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016578.3	-1	validated	p.G160D	1.000	339	0.3%	349	18.3%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C11orf67	28971	genome.wustl.edu	37	11	77580783	77580783	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024684.2	+1	predicted	p.Q50*	1.000	645	0%	196	29.1%	42	7.1%	-	-	-	HMMPfam_DUF498,superfamily_Hypothetical protein MT938 (MTH938)
INTS4	92105	genome.wustl.edu	37	11	77602750	77602750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033547.3	-1	validated	p.L809M	0.996	197	0%	67	16.4%	45	28.8%	possibly_damaging(0.915)	tolerated(0.19)	neutral(0.416)	NULL
KCTD14	65987	genome.wustl.edu	37	11	77728123	77728123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023930.3	-1	validated	p.T95N	0.657	204	0.5%	106	22.6%	24	54.1%	benign(0.167)	tolerated(0.09)	neutral(0.311)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
KCTD14	65987	genome.wustl.edu	37	11	77728197	77728197	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023930.3	-1	validated	p.S70	0.004	147	0%	70	24.3%	28	35.7%	-	-	-	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
USP35	57558	genome.wustl.edu	37	11	77911266	77911266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020798.2	+1	provisional	p.E342K	1.000	179	0%	227	20.7%	3	33.3%	possibly_damaging(0.919)	tolerated(0.06)	deleterious(0.692)	NULL
GAB2	9846	genome.wustl.edu	37	11	77937924	77937924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080491.2	-1	reviewed	p.T265N	1.000	105	0%	74	24.3%	6	50%	benign(0.174)	tolerated(0.19)	neutral(0.066)	NULL
NARS2	79731	genome.wustl.edu	37	11	78147735	78147735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024678.4	-1	validated	p.P472H	1.000	268	0.4%	143	14.7%	53	26.4%	benign(0.192)	deleterious(0)	neutral(0.463)	HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases
ODZ4	26011	genome.wustl.edu	37	11	78369519	78369519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098816.2	-1	validated	p.L2632M	1.000	156	0%	127	16.5%	1	0%	possibly_damaging(0.893)	tolerated(0.11)	deleterious(0.623)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78413130	78413130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098816.2	-1	validated	p.P1510S	1.000	220	0%	101	20.8%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	superfamily_SSF101898,superfamily_TolB_C
ODZ4	26011	genome.wustl.edu	37	11	78600872	78600872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098816.2	-1	validated	p.V348I	0.996	184	0.5%	149	24.2%	0	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78600955	78600955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098816.2	-1	validated	p.R320H	1.000	224	0%	199	22.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ten_N
C11orf82	220042	genome.wustl.edu	37	11	82645045	82645045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145018.3	+1	validated	p.L889I	0.054	131	0%	62	30.6%	12	33.3%	benign(0.31)	tolerated(0.42)	neutral(0.111)	NULL
PCF11	51585	genome.wustl.edu	37	11	82880133	82880133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015885.3	+1	validated	p.G919V	1.000	209	0%	124	29.8%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANKRD42	338699	genome.wustl.edu	37	11	82947551	82947551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182603.2	+1	validated	p.R312M	1.000	206	0.5%	105	19%	3	0%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	superfamily_Ankyrin repeat
SYTL2	54843	genome.wustl.edu	37	11	85406361	85406361	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206927.2	-1	reviewed	p.V1232	0.562	219	0%	106	18.9%	3	0%	-	-	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SYTL2	54843	genome.wustl.edu	37	11	85436784	85436784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206927.2	-1	reviewed	p.R239Q	0.000	250	0%	172	11.6%	0	-	possibly_damaging(0.656)	tolerated(0.06)	deleterious(0.553)	NULL
CCDC83	220047	genome.wustl.edu	37	11	85627151	85627151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173556.3	+1	provisional	p.L350F	0.000	255	0%	105	21.9%	0	-	benign(0.001)	tolerated(0.28)	neutral(0.032)	NULL
PICALM	8301	genome.wustl.edu	37	11	85711735	85711735	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007166.2	-1	validated	p.M369L	1.000	134	0%	69	10.1%	48	14.5%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
EED	8726	genome.wustl.edu	37	11	85977211	85977211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003797.2	+1	reviewed	p.M271I	1.000	226	0%	134	24.6%	15	20%	benign(0)	tolerated(0.21)	neutral(0.044)	superfamily_WD40 repeat-like
EED	8726	genome.wustl.edu	37	11	85988963	85988963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003797.2	+1	reviewed	p.L377I	1.000	127	0%	107	20.6%	33	3%	benign(0.336)	tolerated(0.31)	neutral(0.133)	superfamily_WD40 repeat-like
CCDC81	60494	genome.wustl.edu	37	11	86103837	86103837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000445632	+1	known	p.N185D	1.000	257	0%	109	32.1%	0	-	possibly_damaging(0.944)	deleterious(0.03)	deleterious(0.753)	NULL
FZD4	8322	genome.wustl.edu	37	11	86662289	86662289	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012193.2	-1	reviewed	p.T503	0.205	350	0%	423	23.6%	5	60%	unknown(0)	-	-	HMMPfam_Frizzled
GRM5	2915	genome.wustl.edu	37	11	88300781	88300781	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143831.2	-1	reviewed	p.A690	1.000	448	0%	130	16.9%	0	-	-	-	-	HMMPfam_7tm_3
TYR	7299	genome.wustl.edu	37	11	88911247	88911247	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000372.4	+1	reviewed	p.D42	0.643	122	0.8%	105	16.2%	0	-	-	-	-	NULL
TYR	7299	genome.wustl.edu	37	11	89018089	89018089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000372.4	+1	reviewed	p.L445M	1.000	170	0%	105	20%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Di-copper centre-containing domain
TYR	7299	genome.wustl.edu	37	11	89028413	89028413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000372.4	+1	reviewed	p.A490V	0.012	119	0%	105	31.4%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
NOX4	50507	genome.wustl.edu	37	11	89182639	89182639	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016931.3	-1	reviewed	p.I106	0.981	239	0%	62	21%	3	66.6%	-	-	-	HMMPfam_Ferric_reduct
TRIM77P	390231	genome.wustl.edu	37	11	89447534	89447534	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343107.1	+1	model	p.E228*	0.000	283	0%	108	20.4%	0	-	-	-	-	NULL
ENSG00000234376	0	genome.wustl.edu	37	11	89486461	89486461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000411859	-1	known	p.P225L	0.999	111	0%	83	10.8%	0	-	-	-	-	HMMSmart_SM00398,superfamily_HMG-box
ENSG00000204456	0	genome.wustl.edu	37	11	89499927	89499927	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000375974	-1	known	p.F147V	0.000	255	0%	125	17.6%	0	-	-	-	-	HMMPfam_SPRY
TRIM64B	642446	genome.wustl.edu	37	11	89604178	89604178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000329862	-1	known	p.P321S	0.000	158	0%	183	20.8%	0	-	benign(0.002)	tolerated(0.63)	neutral(0.004)	NULL
ENSG00000223709	0	genome.wustl.edu	37	11	89796053	89796053	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000436580	-1	known	p.C37	0.684	191	0%	134	17.2%	0	-	-	-	-	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box
NAALAD2	10003	genome.wustl.edu	37	11	89868804	89868804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005467.3	+1	reviewed	p.E54K	0.985	542	0%	452	47.3%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
NAALAD2	10003	genome.wustl.edu	37	11	89892459	89892459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005467.3	+1	reviewed	p.V315M	1.000	425	0%	371	20.8%	0	-	unknown(0)	-	-	superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases
ENSG00000214391	0	genome.wustl.edu	37	11	90016619	90016619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000318973	+1	known	p.H265R	1.000	509	0%	260	23.8%	0	-	-	-	-	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
ENSG00000214391	0	genome.wustl.edu	37	11	90016745	90016745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000318973	+1	known	p.R307H	1.000	260	0.4%	111	12.6%	1	0%	-	-	-	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
FAT3	120114	genome.wustl.edu	37	11	92087538	92087538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008781.2	+1	validated	p.D754N	1.000	160	0%	46	23.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92531126	92531126	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008781.2	+1	validated	p.P1649	0.073	193	0%	46	21.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92532944	92532944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008781.2	+1	validated	p.K2255N	0.980	317	0%	71	26.8%	0	-	benign(0.364)	tolerated(0.4)	neutral(0.132)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92533025	92533025	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008781.2	+1	validated	p.D2282	1.000	443	0%	97	26.8%	0	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92533851	92533851	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008781.2	+1	validated	p.L2558	1.000	207	0%	59	30.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92534392	92534392	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008781.2	+1	validated	p.V2738G	0.742	210	0%	54	22.2%	0	-	possibly_damaging(0.772)	tolerated(0.08)	deleterious(0.587)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92539531	92539531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008781.2	+1	validated	p.A3033T	0.998	299	0%	60	21.7%	0	-	benign(0.001)	tolerated(0.48)	neutral(0.011)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92543083	92543083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008781.2	+1	validated	p.G3108R	1.000	167	0%	31	16.1%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92568197	92568197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008781.2	+1	validated	p.V3345I	0.952	108	0%	32	15.6%	0	-	benign(0.016)	tolerated(0.8)	neutral(0.001)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92577230	92577230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008781.2	+1	validated	p.P3566H	1.000	214	0%	100	26%	0	-	possibly_damaging(0.944)	tolerated(0.06)	deleterious(0.711)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92600094	92600094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008781.2	+1	validated	p.T3949M	0.941	40	0%	45	26.7%	0	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
FAT3	120114	genome.wustl.edu	37	11	92624183	92624183	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008781.2	+1	validated	p.S4526	0.790	75	0%	50	28%	0	-	-	-	-	NULL
MTNR1B	4544	genome.wustl.edu	37	11	92715304	92715304	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005959.3	+1	reviewed	p.A305	0.987	152	0%	130	18.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SLC36A4	120103	genome.wustl.edu	37	11	92917673	92917673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152313.2	-1	provisional	p.L65I	1.000	300	0%	271	21.4%	7	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Aa_trans
SLC36A4	120103	genome.wustl.edu	37	11	92918856	92918856	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152313.2	-1	provisional	e2+1	1.000	214	0%	160	18.1%	0	-	-	-	-	-
CCDC67	159989	genome.wustl.edu	37	11	93088649	93088649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181645.3	+1	validated	p.D48N	0.999	319	0%	122	23.8%	0	-	probably_damaging(0.983)	tolerated(0.07)	deleterious(0.748)	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93430450	93430450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033395.1	+1	validated	p.P791H	0.559	251	0%	102	20.6%	1	100%	benign(0.031)	deleterious(0)	neutral(0.446)	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93431460	93431460	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033395.1	+1	validated	p.L1128V	0.005	129	0%	61	16.4%	2	0%	unknown(0)	tolerated(0.3)	-	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93432860	93432860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033395.1	+1	validated	p.K1594N	0.000	114	0%	30	13.3%	4	25%	benign(0.083)	deleterious(0.01)	neutral(0.412)	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93432876	93432876	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033395.1	+1	validated	p.Q1600*	0.066	120	0%	29	17.2%	3	33.3%	-	-	-	NULL
TAF1D	79101	genome.wustl.edu	37	11	93472437	93472437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024116.3	-1	validated	p.V12M	0.000	592	0%	399	21.6%	32	40.6%	possibly_damaging(0.519)	tolerated(0.08)	deleterious(0.474)	NULL
HEPHL1	341208	genome.wustl.edu	37	11	93837734	93837734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098672.1	+1	validated	p.R908Q	1.000	417	0%	213	16.9%	0	-	probably_damaging(0.99)	tolerated(0.12)	deleterious(0.702)	superfamily_Cupredoxin
PIWIL4	143689	genome.wustl.edu	37	11	94353018	94353018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152431.2	+1	validated	p.T754N	0.998	373	0%	149	10.7%	11	45.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Piwi,superfamily_Ribonuclease H-like
AMOTL1	154810	genome.wustl.edu	37	11	94563341	94563341	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130847.2	+1	reviewed	p.D513E	0.994	278	0%	193	14.5%	1	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
KDM4D	55693	genome.wustl.edu	37	11	94731914	94731914	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018039.2	+1	validated	p.L460	0.002	35	0%	34	26.5%	4	100%	-	-	-	NULL
KDM4DL	390245	genome.wustl.edu	37	11	94758772	94758772	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000450979	+1	known	p.T17	0.646	234	0%	140	21.4%	0	-	-	-	-	HMMPfam_JmjN
KDM4DL	390245	genome.wustl.edu	37	11	94760192	94760192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000450979	+1	known	p.R491G	0.000	129	0%	92	20.7%	0	-	benign(0.009)	deleterious(0.01)	neutral(0.406)	NULL
MAML2	84441	genome.wustl.edu	37	11	95825795	95825795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032427.1	-1	validated	p.S467Y	0.287	62	0%	24	16.7%	4	75%	unknown(0)	deleterious(0.03)	-	NULL
CCDC82	79780	genome.wustl.edu	37	11	96092254	96092254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024725.3	-1	validated	p.C490Y	1.000	793	0%	538	21.4%	23	21.7%	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	NULL
JRKL	8690	genome.wustl.edu	37	11	96124412	96124412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003772.3	+1	reviewed	p.P200H	0.003	72	0%	102	26.5%	8	62.5%	benign(0.293)	deleterious(0)	deleterious(0.535)	HMMPfam_DDE
CNTN5	53942	genome.wustl.edu	37	11	100095464	100095464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014361.2	+1	reviewed	p.L642P	1.000	390	0.3%	113	13.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ANGPTL5	253935	genome.wustl.edu	37	11	101765653	101765653	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178127.4	-1	validated	p.T268	0.993	263	0%	222	26.6%	0	-	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
ANGPTL5	253935	genome.wustl.edu	37	11	101777954	101777954	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178127.4	-1	validated	p.E41*	0.925	442	0%	512	20.9%	0	-	-	-	-	NULL
KIAA1377	57562	genome.wustl.edu	37	11	101833546	101833546	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020802.2	+1	validated	p.I594L	0.619	47	0%	31	35.5%	0	-	benign(0.063)	tolerated(0.14)	neutral(0.254)	NULL
KIAA1377	57562	genome.wustl.edu	37	11	101849107	101849107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020802.2	+1	validated	p.A959T	0.039	310	0%	186	25.3%	0	-	benign(0.001)	tolerated(0.13)	neutral(0.253)	NULL
BIRC2	329	genome.wustl.edu	37	11	102221118	102221118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001166.3	+1	reviewed	p.S178I	0.995	205	0.5%	225	21.8%	11	27.2%	possibly_damaging(0.623)	tolerated(0.26)	neutral(0.251)	superfamily_SSF57924
TMEM123	114908	genome.wustl.edu	37	11	102272364	102272364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052932.2	-1	reviewed	p.V170I	1.000	257	0%	179	24%	91	38.4%	benign(0.417)	tolerated(0.15)	neutral(0.376)	NULL
MMP10	4319	genome.wustl.edu	37	11	102650033	102650033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002425.2	-1	reviewed	p.A136D	1.000	475	0%	317	13.6%	24	8.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
DYNC2H1	79659	genome.wustl.edu	37	11	103006564	103006564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080463.1	+1	reviewed	p.D821Y	1.000	315	0%	173	23.7%	0	-	benign(0.034)	deleterious(0.02)	neutral(0.385)	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103014071	103014071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080463.1	+1	reviewed	p.E883D	1.000	478	0%	381	22.8%	0	-	possibly_damaging(0.823)	deleterious(0)	deleterious(0.756)	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103126151	103126151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080463.1	+1	reviewed	p.A3412D	1.000	311	0%	105	22.9%	0	-	benign(0.212)	deleterious(0.01)	neutral(0.426)	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103175365	103175365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080463.1	+1	reviewed	p.M3773I	1.000	323	0%	107	22.4%	1	0%	benign(0.019)	tolerated(0.09)	neutral(0.297)	HMMPfam_Dynein_heavy
DYNC2H1	79659	genome.wustl.edu	37	11	103191806	103191806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080463.1	+1	reviewed	p.A3932D	1.000	313	0%	248	19.4%	1	0%	possibly_damaging(0.859)	deleterious(0)	deleterious(0.776)	HMMPfam_Dynein_heavy
DYNC2H1	79659	genome.wustl.edu	37	11	103191954	103191954	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080463.1	+1	reviewed	p.S3981	0.980	367	0%	270	20.7%	5	20%	-	-	-	HMMPfam_Dynein_heavy
PDGFD	80310	genome.wustl.edu	37	11	103814213	103814213	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025208.4	-1	reviewed	p.R247*	1.000	249	0%	87	25.3%	0	-	-	-	-	NULL
PDGFD	80310	genome.wustl.edu	37	11	103814333	103814333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025208.4	-1	reviewed	p.A207T	1.000	338	0%	108	16.7%	1	0%	possibly_damaging(0.922)	deleterious(0.05)	deleterious(0.717)	NULL
DDI1	414301	genome.wustl.edu	37	11	103908438	103908438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001711.2	+1	validated	p.Q296H	0.993	244	0%	327	22.6%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	superfamily_Pept_Aspartic,HMMPfam_Asp_protease
CASP4	837	genome.wustl.edu	37	11	104820297	104820297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001225.3	-1	reviewed	p.V252I	1.000	592	0%	130	26.2%	243	36.2%	possibly_damaging(0.605)	tolerated(0.27)	neutral(0.243)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_CYS,superfamily_Caspase-like
CASP5	838	genome.wustl.edu	37	11	104877934	104877934	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136112.1	-1	reviewed	p.Y116*	0.000	385	0%	177	19.2%	1	0%	-	-	-	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain
GRIA4	2893	genome.wustl.edu	37	11	105774625	105774625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000829.3	+1	reviewed	p.R324M	1.000	340	0%	127	24.4%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIA4	2893	genome.wustl.edu	37	11	105795133	105795133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000829.3	+1	reviewed	p.E495D	1.000	233	0%	63	25.4%	0	-	benign(0.001)	tolerated(1)	-	HMMSmart_PBPe,superfamily_SSF53850
GRIA4	2893	genome.wustl.edu	37	11	105845109	105845109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000829.3	+1	reviewed	p.A828T	1.000	557	0%	293	16.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Lig_chan
MSANTD4	84437	genome.wustl.edu	37	11	105880291	105880291	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032424.1	-1	validated	p.R337*	0.994	290	0%	192	20.8%	2	0%	-	-	-	NULL
MSANTD4	84437	genome.wustl.edu	37	11	105880531	105880531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032424.1	-1	validated	p.L257M	1.000	200	0%	140	19.3%	2	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
MSANTD4	84437	genome.wustl.edu	37	11	105880582	105880582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032424.1	-1	validated	p.L240M	1.000	233	0%	152	30.3%	5	0%	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
AASDHPPT	60496	genome.wustl.edu	37	11	105967583	105967583	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015423.2	+1	reviewed	p.D293	1.000	306	0%	149	28.9%	36	50%	-	-	-	NULL
ELMOD1	55531	genome.wustl.edu	37	11	107502335	107502335	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018712.3	+1	validated	p.P74	0.981	243	0.4%	100	18%	0	-	-	-	-	NULL
ELMOD1	55531	genome.wustl.edu	37	11	107518314	107518314	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018712.3	+1	validated	p.L181	0.997	426	0%	258	24%	0	-	-	-	-	HMMPfam_ELMO_CED12
RAB39A	54734	genome.wustl.edu	37	11	107799359	107799359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017516.1	+1	provisional	p.S22Y	1.000	42	0%	27	29.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
NPAT	4863	genome.wustl.edu	37	11	108043298	108043298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002519.2	-1	validated	p.G805W	0.019	148	0%	60	23.3%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NPAT	4863	genome.wustl.edu	37	11	108060041	108060041	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002519.2	-1	validated	p.G116	1.000	336	0%	277	26.7%	1	0%	-	-	-	NULL
ATM	472	genome.wustl.edu	37	11	108099957	108099957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000051.3	+1	reviewed	p.P80S	1.000	123	0%	102	25.5%	5	20%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
ATM	472	genome.wustl.edu	37	11	108100018	108100018	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000051.3	+1	reviewed	p.L100W	1.000	171	0%	143	23.1%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATM	472	genome.wustl.edu	37	11	108121756	108121756	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000051.3	+1	reviewed	p.E522*	1.000	291	0%	162	21%	0	-	-	-	-	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108143318	108143318	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000051.3	+1	reviewed	p.L1046R	1.000	499	0%	334	20.1%	0	-	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108180947	108180947	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000051.3	+1	reviewed	p.V1941	0.999	337	0%	157	11.5%	1	0%	-	-	-	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108206584	108206584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000051.3	+1	reviewed	p.L2722M	1.000	263	0%	91	16.5%	3	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1
C11orf65	160140	genome.wustl.edu	37	11	108253896	108253896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152587.3	-1	validated	p.R265M	0.594	256	0%	136	24.3%	1	0%	benign(0.267)	tolerated(0.08)	neutral(0.328)	NULL
C11orf65	160140	genome.wustl.edu	37	11	108264071	108264071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152587.3	-1	validated	p.H199Y	0.001	808	0%	396	23.5%	3	100%	benign(0.282)	tolerated(0.16)	neutral(0.146)	NULL
EXPH5	23086	genome.wustl.edu	37	11	108384204	108384204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015065.2	-1	validated	p.S677I	0.000	430	0%	290	20.7%	0	-	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	NULL
EXPH5	23086	genome.wustl.edu	37	11	108385448	108385448	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015065.2	-1	validated	p.H262	0.006	567	0%	335	22.4%	1	0%	-	-	-	NULL
ZC3H12C	85463	genome.wustl.edu	37	11	110035530	110035530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033390.1	+1	validated	p.P574T	1.000	268	0%	153	15%	0	-	benign(0.265)	tolerated(0.45)	neutral(0.040)	NULL
ARHGAP20	57569	genome.wustl.edu	37	11	110454445	110454445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020809.2	-1	validated	p.P478S	1.000	284	0%	94	24.5%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ARHGAP20	57569	genome.wustl.edu	37	11	110485285	110485285	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020809.2	-1	validated	p.Y210	0.995	243	0.4%	193	20.7%	0	-	-	-	-	HMMPfam_RA
POU2AF1	5450	genome.wustl.edu	37	11	111229555	111229555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006235.2	-1	validated	p.K35N	0.998	83	0%	59	16.9%	13	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_PD-C2-AF1
FDXACB1	91893	genome.wustl.edu	37	11	111745772	111745772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138378.1	-1	validated	p.Q583H	1.000	519	0%	576	21.4%	9	44.4%	benign(0.416)	tolerated(0.23)	neutral(0.176)	HMMPfam_FDX-ACB,superfamily_Anticodon-binding domain of PheRS
C11orf1	64776	genome.wustl.edu	37	11	111753295	111753295	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022761.2	+1	validated	p.I83	0.000	281	0%	226	19.5%	98	30.6%	-	-	-	HMMPfam_DUF1143
DIXDC1	85458	genome.wustl.edu	37	11	111866284	111866284	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037954.2	+1	validated	p.E562*	1.000	124	0%	70	17.1%	1	0%	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
DIXDC1	85458	genome.wustl.edu	37	11	111888560	111888560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000440460	+1	known	p.R640Q	1.000	524	0.2%	357	19%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DIX,HMMSmart_SM00021
SDHD	6392	genome.wustl.edu	37	11	111965680	111965680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000375549	+1	known	p.L156M	1.000	73	0%	29	20.7%	144	4.8%	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMPfam_CybS
BCO2	83875	genome.wustl.edu	37	11	112085592	112085592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031938.4	+1	validated	p.F480L	1.000	629	0.2%	587	21%	0	-	possibly_damaging(0.746)	deleterious(0.01)	deleterious(0.679)	HMMPfam_RPE65
NCAM1	4684	genome.wustl.edu	37	11	113102379	113102379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000401611	+1	known	p.H240Y	1.000	66	0%	50	26%	1	0%	benign(0.215)	tolerated(0.4)	neutral(0.037)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
NCAM1	4684	genome.wustl.edu	37	11	113126681	113126681	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000401611	+1	known	p.D544	0.990	131	0%	41	22%	1	0%	-	-	-	superfamily_FN_III-like
TTC12	54970	genome.wustl.edu	37	11	113222013	113222013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017868.3	+1	validated	p.G434C	0.003	228	0%	105	19%	13	38.4%	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	superfamily_ARM-type_fold
ANKK1	255239	genome.wustl.edu	37	11	113265762	113265762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178510.1	+1	reviewed	p.E198K	1.000	123	0%	102	17.6%	0	-	possibly_damaging(0.866)	deleterious(0.01)	deleterious(0.741)	superfamily_Kinase_like,HMMPfam_Pkinase
DRD2	1813	genome.wustl.edu	37	11	113283486	113283486	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000795.3	-1	reviewed	p.P310	0.000	354	0%	171	21.1%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZW10	9183	genome.wustl.edu	37	11	113628411	113628411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004724.2	-1	reviewed	p.L300I	0.598	176	0%	104	28.8%	14	28.5%	possibly_damaging(0.925)	tolerated(0.07)	deleterious(0.693)	HMMPfam_Zw10
USP28	57646	genome.wustl.edu	37	11	113672230	113672230	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020886.2	-1	validated	p.C1011*	1.000	313	0%	134	15.7%	8	37.5%	-	-	-	NULL
USP28	57646	genome.wustl.edu	37	11	113675639	113675639	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020886.2	-1	validated	p.R844*	0.999	442	0%	228	21.5%	6	0%	-	-	-	NULL
HTR3B	9177	genome.wustl.edu	37	11	113803769	113803769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006028.3	+1	reviewed	p.S217I	0.001	341	0%	132	18.2%	0	-	benign(0.01)	tolerated(0.2)	neutral(0.050)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
HTR3A	3359	genome.wustl.edu	37	11	113860364	113860364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213621.3	+1	reviewed	p.A471V	1.000	42	0%	30	20%	0	-	possibly_damaging(0.768)	tolerated(0.51)	neutral(0.294)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
ZBTB16	7704	genome.wustl.edu	37	11	113935069	113935069	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018011.1	+1	reviewed	p.P349	0.000	94	0%	95	21.1%	1	0%	-	-	-	NULL
REXO2	25996	genome.wustl.edu	37	11	114316750	114316750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015523.3	+1	validated	p.Q157H	1.000	353	0%	385	18.2%	72	47.2%	benign(0.002)	tolerated(0.05)	neutral(0.345)	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T
FAM55A	120400	genome.wustl.edu	37	11	114392866	114392866	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152315.2	-1	validated	p.F348I	0.016	522	0%	251	13.9%	0	-	benign(0.075)	deleterious(0)	neutral(0.450)	NULL
FAM55A	120400	genome.wustl.edu	37	11	114392980	114392980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152315.2	-1	validated	p.R310C	0.990	343	0.3%	124	18.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CADM1	23705	genome.wustl.edu	37	11	115047299	115047299	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014333.3	-1	validated	p.T408	0.999	524	0%	307	11.1%	16	0%	-	-	-	HMMSmart_SM00294
CADM1	23705	genome.wustl.edu	37	11	115080365	115080365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014333.3	-1	validated	p.T336N	1.000	134	0%	36	16.7%	13	15.3%	unknown(0)	tolerated(0.13)	-	NULL
SIK3	23387	genome.wustl.edu	37	11	116733035	116733035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000375288	-1	known	p.S30N	1.000	417	0%	173	13.9%	7	0%	unknown(0)	-	-	NULL
PAFAH1B2	5049	genome.wustl.edu	37	11	117023240	117023240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002572.3	+1	validated	p.S26Y	1.000	316	0%	248	22.2%	6	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SGNH hydrolase
SIDT2	51092	genome.wustl.edu	37	11	117054801	117054801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040455.1	+1	validated	p.D272N	1.000	204	0%	218	18.8%	14	35.7%	possibly_damaging(0.805)	tolerated(0.94)	neutral(0.303)	NULL
SIDT2	51092	genome.wustl.edu	37	11	117059535	117059535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040455.1	+1	validated	p.R424H	1.000	150	0%	126	16.7%	15	13.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SIDT2	51092	genome.wustl.edu	37	11	117064642	117064642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040455.1	+1	validated	p.A762V	0.998	157	0%	227	21.1%	32	18.7%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
TAGLN	6876	genome.wustl.edu	37	11	117075049	117075049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001522.1	+1	reviewed	p.G194R	1.000	125	0%	82	23.2%	414	0.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Calponin,PatternScan_CALPONIN_1
RNF214	257160	genome.wustl.edu	37	11	117115292	117115292	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077239.1	+1	validated	p.K270	1.000	223	0%	190	18.9%	7	42.8%	-	-	-	NULL
CEP164	22897	genome.wustl.edu	37	11	117252436	117252436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014956.4	+1	validated	p.H477Y	0.005	28	0%	20	25%	5	60%	benign(0.154)	deleterious(0.03)	neutral(0.378)	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117307942	117307942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020693.2	-1	provisional	p.T1599M	0.349	168	0%	184	11.4%	0	-	possibly_damaging(0.836)	tolerated(0.16)	neutral(0.379)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DSCAML1	57453	genome.wustl.edu	37	11	117651207	117651207	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020693.2	-1	provisional	e2+1	1.000	137	0%	139	28.1%	2	100%	-	-	-	-
FXYD2	486	genome.wustl.edu	37	11	117693277	117693277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127489.1	-1	reviewed	p.G61C	0.306	139	0%	81	23.5%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
IL10RA	3587	genome.wustl.edu	37	11	117870209	117870209	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001558.3	+1	reviewed	p.S530	0.008	53	0%	47	14.9%	23	0%	-	-	-	NULL
SCN4B	6330	genome.wustl.edu	37	11	118007723	118007723	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_024527.1	-1	reviewed	NULL	0.462	203	0%	172	18%	0	-	-	-	-	-
UBE4A	9354	genome.wustl.edu	37	11	118244309	118244309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004788.2	+1	reviewed	p.T349N	1.000	422	0%	179	23.5%	5	40%	benign(0.104)	deleterious(0)	neutral(0.453)	HMMPfam_Ufd2P_core
UBE4A	9354	genome.wustl.edu	37	11	118267107	118267107	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004788.2	+1	reviewed	p.I1058	1.000	253	0%	143	17.5%	11	27.2%	-	-	-	HMMPfam_U-box,HMMSmart_SM00504
MLL	4297	genome.wustl.edu	37	11	118343153	118343153	+	Missense_Mutation	SNP	C	C	T	rs142138730	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005933.2	+1	validated	p.R427W	1.000	124	0%	88	12.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MLL	4297	genome.wustl.edu	37	11	118362640	118362640	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005933.2	+1	validated	p.R1664	0.986	116	0%	130	17.7%	0	-	-	-	-	HMMSmart_SM00297
MLL	4297	genome.wustl.edu	37	11	118371830	118371830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005933.2	+1	validated	p.R2093M	0.996	190	0%	95	31.6%	4	25%	probably_damaging(0.995)	-	-	NULL
MLL	4297	genome.wustl.edu	37	11	118373690	118373690	+	Silent	SNP	G	G	A	rs192173056	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005933.2	+1	validated	p.S2358	0.000	236	0.4%	156	21.8%	1	0%	-	-	-	NULL
TMEM25	84866	genome.wustl.edu	37	11	118403784	118403784	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032780.3	+1	validated	p.F179V	1.000	83	0%	117	23.9%	22	50%	benign(0.282)	deleterious(0.01)	deleterious(0.492)	superfamily_Immunoglobulin
IFT46	56912	genome.wustl.edu	37	11	118422992	118422992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020153.3	-1	validated	p.T232M	0.862	573	0%	320	23.7%	36	58.3%	probably_damaging(0.974)	tolerated(0.11)	deleterious(0.688)	NULL
PHLDB1	23187	genome.wustl.edu	37	11	118502929	118502929	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144758.1	+1	validated	p.L765	0.997	145	0%	123	22%	5	0%	-	-	-	NULL
PHLDB1	23187	genome.wustl.edu	37	11	118526593	118526593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144758.1	+1	validated	p.M1328I	1.000	315	0%	221	13.6%	0	-	benign(0)	tolerated(0.64)	neutral(0.003)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
TREH	11181	genome.wustl.edu	37	11	118532113	118532113	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000264029	-1	known	p.T241	0.000	289	0%	187	19.3%	0	-	-	-	-	HMMPfam_Trehalase,superfamily_Six-hairpin glycosidases
BCL9L	283149	genome.wustl.edu	37	11	118769565	118769565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182557.2	-1	validated	p.Q1353H	1.000	149	0%	117	20.5%	44	36.3%	benign(0.019)	deleterious(0.03)	neutral(0.365)	NULL
BCL9L	283149	genome.wustl.edu	37	11	118779146	118779146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182557.2	-1	validated	p.A82V	1.000	122	0%	147	26.5%	13	53.8%	benign(0.355)	tolerated(0.61)	neutral(0.117)	NULL
HYOU1	10525	genome.wustl.edu	37	11	118922262	118922262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130991.1	-1	reviewed	p.R472W	1.000	478	0%	407	26.3%	70	40%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
HYOU1	10525	genome.wustl.edu	37	11	118925975	118925975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130991.1	-1	reviewed	p.A114D	1.000	147	0.7%	177	18.1%	39	43.5%	possibly_damaging(0.538)	tolerated(0.63)	neutral(0.185)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
NLRX1	79671	genome.wustl.edu	37	11	119042139	119042139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024618.2	+1	reviewed	p.R9S	1.000	278	0%	269	22.3%	8	37.5%	possibly_damaging(0.934)	deleterious(0)	deleterious(0.825)	NULL
MCAM	4162	genome.wustl.edu	37	11	119181087	119181087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006500.2	-1	validated	p.S628N	0.818	132	0%	138	10.1%	27	3.7%	benign(0)	tolerated(1)	-	NULL
MCAM	4162	genome.wustl.edu	37	11	119183044	119183044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006500.2	-1	validated	p.E319G	0.029	155	0%	223	24.2%	23	0%	possibly_damaging(0.935)	tolerated(0.21)	neutral(0.424)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
MFRP	83552	genome.wustl.edu	37	11	119216802	119216802	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031433.2	-1	reviewed	p.S75	0.002	76	0%	80	16.3%	0	-	-	-	-	NULL
MFRP	83552	genome.wustl.edu	37	11	119217040	119217040	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031433.2	-1	reviewed	p.P33	0.000	263	0%	194	16.5%	0	-	-	-	-	NULL
PVRL1	5818	genome.wustl.edu	37	11	119549424	119549424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002855.4	-1	reviewed	p.G44D	1.000	27	0%	28	39.3%	9	77.7%	probably_damaging(0.987)	tolerated(0.06)	deleterious(0.759)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
TRIM29	23650	genome.wustl.edu	37	11	119993763	119993763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012101.3	-1	reviewed	p.G445V	0.985	169	0%	142	23.9%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRIM29	23650	genome.wustl.edu	37	11	119996462	119996462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012101.3	-1	reviewed	p.V424I	0.936	175	0.6%	120	15%	16	50%	benign(0.081)	tolerated(0.18)	neutral(0.062)	NULL
POU2F3	25833	genome.wustl.edu	37	11	120176370	120176370	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014352.2	+1	validated	p.A215	0.797	121	0%	76	14.5%	0	-	-	-	-	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains
POU2F3	25833	genome.wustl.edu	37	11	120180245	120180245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014352.2	+1	validated	p.N340D	1.000	203	0%	76	15.8%	0	-	benign(0.006)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00389
ARHGEF12	23365	genome.wustl.edu	37	11	120318979	120318979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015313.1	+1	reviewed	p.K553N	1.000	370	0.3%	164	20.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RGS-like,superfamily_Regulator of G-protein signaling RGS
ARHGEF12	23365	genome.wustl.edu	37	11	120331410	120331410	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015313.1	+1	reviewed	p.R853*	1.000	502	0%	224	20.5%	5	60%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
GRIK4	2900	genome.wustl.edu	37	11	120686169	120686169	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014619.2	+1	reviewed	p.I110	1.000	69	0%	44	18.2%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIK4	2900	genome.wustl.edu	37	11	120690485	120690485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014619.2	+1	reviewed	p.P123S	1.000	303	0%	172	15.7%	0	-	possibly_damaging(0.592)	tolerated(0.67)	neutral(0.207)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIK4	2900	genome.wustl.edu	37	11	120690533	120690533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014619.2	+1	reviewed	p.L139I	1.000	235	0%	127	28.3%	1	0%	possibly_damaging(0.84)	deleterious(0.01)	deleterious(0.727)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIK4	2900	genome.wustl.edu	37	11	120745922	120745922	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014619.2	+1	reviewed	p.I378	1.000	261	0%	140	21.4%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIK4	2900	genome.wustl.edu	37	11	120852815	120852815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014619.2	+1	reviewed	p.G799D	1.000	739	0%	830	24.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Lig_chan
TECTA	7007	genome.wustl.edu	37	11	120976544	120976544	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005422.2	+1	reviewed	p.Q23	0.995	263	0%	90	14.4%	0	-	-	-	-	NULL
TECTA	7007	genome.wustl.edu	37	11	121000384	121000384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005422.2	+1	reviewed	p.P802H	1.000	465	0%	312	19.9%	0	-	benign(0.136)	tolerated(0.14)	neutral(0.261)	HMMPfam_VWD,HMMSmart_SM00216
TECTA	7007	genome.wustl.edu	37	11	121031011	121031011	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005422.2	+1	reviewed	p.C1619*	0.872	194	0%	209	24.9%	1	0%	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
TECTA	7007	genome.wustl.edu	37	11	121061420	121061420	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005422.2	+1	reviewed	p.N2125H	1.000	466	0%	329	26.1%	0	-	possibly_damaging(0.598)	deleterious(0.03)	deleterious(0.572)	superfamily_EGF/Laminin
SORL1	6653	genome.wustl.edu	37	11	121340758	121340758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003105.4	+1	reviewed	p.A110T	1.000	157	0%	98	11.2%	1	0%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
SORL1	6653	genome.wustl.edu	37	11	121485685	121485685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003105.4	+1	reviewed	p.R1842H	0.319	98	0%	69	15.9%	13	30.7%	possibly_damaging(0.782)	tolerated(0.12)	deleterious(0.553)	superfamily_Fibronectin type III
UBASH3B	84959	genome.wustl.edu	37	11	122650347	122650347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032873.4	+1	validated	p.A182V	1.000	134	0%	53	18.9%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C11orf63	79864	genome.wustl.edu	37	11	122805282	122805282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024806.2	+1	validated	p.S378Y	0.008	193	0%	52	21.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
HSPA8	3312	genome.wustl.edu	37	11	122928472	122928472	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006597.3	-1	reviewed	p.S637	0.994	332	0%	243	16%	1291	38.8%	-	-	-	NULL
HSPA8	3312	genome.wustl.edu	37	11	122931858	122931858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006597.3	-1	reviewed	p.V59I	1.000	333	0%	290	19.7%	514	41.8%	benign(0.155)	deleterious(0)	neutral(0.458)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
SCN3B	55800	genome.wustl.edu	37	11	123513288	123513288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040151.1	-1	reviewed	p.S104F	1.000	71	0%	41	26.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
OR6M1	390261	genome.wustl.edu	37	11	123676994	123676994	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005325.1	-1	provisional	p.R22*	0.001	180	0.6%	41	22%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
TMEM225	338661	genome.wustl.edu	37	11	123755305	123755305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013743.1	-1	provisional	p.L74F	0.001	367	0%	62	24.2%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
OR4D5	219875	genome.wustl.edu	37	11	123810768	123810768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001965.1	+1	provisional	p.W149R	1.000	161	0.6%	74	16.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6T1	219874	genome.wustl.edu	37	11	123814474	123814474	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005187.1	-1	provisional	p.Q24	0.000	100	0%	42	16.7%	0	-	-	-	-	superfamily_SSF81321
OR10G8	219869	genome.wustl.edu	37	11	123900825	123900825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004464.1	+1	provisional	p.P166T	0.847	386	0%	161	14.3%	0	-	possibly_damaging(0.736)	deleterious(0.02)	deleterious(0.652)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
VWA5A	4013	genome.wustl.edu	37	11	123989240	123989240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130142.1	+1	validated	p.G157E	0.029	167	0%	116	13.8%	26	34.6%	benign(0.013)	tolerated(1)	neutral(0.001)	NULL
VWA5A	4013	genome.wustl.edu	37	11	124007322	124007322	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130142.1	+1	validated	p.L522	0.068	238	0%	176	22.7%	58	53.4%	-	-	-	NULL
OR8G2	26492	genome.wustl.edu	37	11	124095829	124095829	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007249.1	+1	provisional	p.L144	0.877	348	0%	264	20.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8D1	283159	genome.wustl.edu	37	11	124180652	124180652	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002917.1	-1	provisional	p.E4A	0.000	79	0%	27	25.9%	0	-	benign(0.001)	tolerated(0.53)	neutral(0.007)	superfamily_Family A G protein-coupled receptor-like
OR8B3	390271	genome.wustl.edu	37	11	124266551	124266551	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005467.1	-1	provisional	p.G233*	0.167	339	0%	167	16.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8B8	26493	genome.wustl.edu	37	11	124310774	124310774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012378.1	-1	provisional	p.D70N	0.999	442	0%	398	20.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MSANTD2	79684	genome.wustl.edu	37	11	124637456	124637456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024631.2	-1	validated	p.E380D	0.997	111	0%	148	18.2%	8	75%	benign(0)	deleterious(0)	neutral(0.445)	NULL
ROBO3	64221	genome.wustl.edu	37	11	124740064	124740064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022370.3	+1	reviewed	p.R257H	1.000	283	0%	291	17.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Immunoglobulin
ROBO3	64221	genome.wustl.edu	37	11	124742801	124742801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022370.3	+1	reviewed	p.P451L	1.000	64	0%	94	28.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_I-set,superfamily_Immunoglobulin
ROBO3	64221	genome.wustl.edu	37	11	124745514	124745514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022370.3	+1	reviewed	p.S785I	1.000	48	0%	54	18.5%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ROBO4	54538	genome.wustl.edu	37	11	124756449	124756449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019055.5	-1	validated	p.A902D	0.016	71	0%	43	11.6%	8	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
SLC37A2	219855	genome.wustl.edu	37	11	124950676	124950676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198277.2	+1	validated	p.H232Y	0.955	107	0%	101	20.8%	1	0%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
FEZ1	9638	genome.wustl.edu	37	11	125351530	125351530	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005103.3	-1	reviewed	e2-1	1.000	248	0.4%	118	21.2%	0	-	-	-	-	-
CHEK1	1111	genome.wustl.edu	37	11	125503112	125503112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114121.1	+1	validated	p.R160H	0.998	364	0%	284	20.8%	15	33.3%	possibly_damaging(0.646)	deleterious(0.04)	deleterious(0.576)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CHEK1	1111	genome.wustl.edu	37	11	125514004	125514004	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114121.1	+1	validated	p.Y314	0.995	267	0%	248	23.4%	26	46.1%	-	-	-	superfamily_Protein kinase-like (PK-like)
ACRV1	56	genome.wustl.edu	37	11	125548003	125548003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001612.4	-1	reviewed	p.A81V	0.003	170	0.6%	41	17.1%	0	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
PATE1	160065	genome.wustl.edu	37	11	125618578	125618578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138294.2	+1	validated	p.V111L	0.142	380	0%	102	23.5%	0	-	possibly_damaging(0.892)	-	-	NULL
PATE4	399968	genome.wustl.edu	37	11	125707872	125707872	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144874.1	+1	validated	p.Y56*	0.001	228	0%	52	19.2%	0	-	-	-	-	NULL
PATE4	399968	genome.wustl.edu	37	11	125708245	125708245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144874.1	+1	validated	p.R74W	0.000	187	0%	64	15.6%	0	-	benign(0.293)	deleterious(0.01)	deleterious(0.496)	NULL
PUS3	83480	genome.wustl.edu	37	11	125766161	125766161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031307.3	-1	validated	p.D7Y	0.466	516	0%	537	21.2%	5	20%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
HYLS1	219844	genome.wustl.edu	37	11	125769942	125769942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134793.1	+1	reviewed	p.R227C	0.006	219	0%	223	27.4%	9	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DDX25	29118	genome.wustl.edu	37	11	125778159	125778159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013264.3	+1	reviewed	p.A127V	1.000	226	0%	225	17.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX25	29118	genome.wustl.edu	37	11	125787060	125787060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013264.3	+1	reviewed	p.L318M	0.016	189	0%	114	20.2%	0	-	benign(0.005)	tolerated(0.1)	neutral(0.286)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CDON	50937	genome.wustl.edu	37	11	125875677	125875677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016952.4	-1	validated	p.A610T	1.000	152	0%	50	10%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CDON	50937	genome.wustl.edu	37	11	125887118	125887118	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016952.4	-1	validated	p.G265*	0.017	213	0%	76	27.6%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
DCPS	28960	genome.wustl.edu	37	11	126213248	126213248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014026.3	+1	validated	p.R228I	0.259	116	0%	148	24.3%	69	37.6%	possibly_damaging(0.686)	deleterious(0)	deleterious(0.690)	HMMPfam_DcpS,superfamily_His_triad-like_motif
KIRREL3	84623	genome.wustl.edu	37	11	126294649	126294649	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032531.3	-1	reviewed	p.S721	1.000	171	0%	146	15.1%	0	-	-	-	-	NULL
KIRREL3	84623	genome.wustl.edu	37	11	126295538	126295538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032531.3	-1	reviewed	p.L630M	1.000	189	0%	171	22.2%	0	-	possibly_damaging(0.818)	tolerated(0.61)	neutral(0.313)	NULL
KIRREL3	84623	genome.wustl.edu	37	11	126314948	126314948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032531.3	-1	reviewed	p.A393V	1.000	79	0%	73	16.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
FLI1	2313	genome.wustl.edu	37	11	128680466	128680466	+	Silent	SNP	C	C	T	rs61733405	byFrequency;by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002017.3	+1	validated	p.P314	0.997	89	1.1%	72	20.8%	9	0%	-	-	-	"HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain"
KCNJ5	3762	genome.wustl.edu	37	11	128781408	128781408	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000890.3	+1	reviewed	p.T80	0.185	177	0%	123	29.3%	2	50%	-	-	-	HMMPfam_IRK,superfamily_SSF81324
ARHGAP32	9743	genome.wustl.edu	37	11	128840793	128840793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142685.1	-1	validated	p.A1425T	0.785	133	0%	114	19.3%	1	0%	probably_damaging(0.999)	tolerated(0.29)	deleterious(0.519)	NULL
BARX2	8538	genome.wustl.edu	37	11	129312796	129312796	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003658.4	+1	reviewed	p.R185	1.000	344	0%	188	19.7%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
NFRKB	4798	genome.wustl.edu	37	11	129762640	129762640	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006165.3	-1	validated	p.R48S	0.992	170	0%	251	25.5%	2	0%	probably_damaging(0.961)	tolerated(0.05)	deleterious(0.750)	NULL
PRDM10	56980	genome.wustl.edu	37	11	129793283	129793283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020228.2	-1	reviewed	p.R636C	1.000	193	0%	124	22.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PRDM10	56980	genome.wustl.edu	37	11	129800985	129800985	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020228.2	-1	reviewed	p.Q486*	0.911	385	0%	350	25.1%	2	0%	-	-	-	NULL
APLP2	334	genome.wustl.edu	37	11	129991646	129991646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001642.2	+1	validated	p.E218D	0.413	174	0%	146	23.3%	157	1.2%	possibly_damaging(0.476)	tolerated(0.43)	neutral(0.171)	NULL
APLP2	334	genome.wustl.edu	37	11	129999090	129999090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001642.2	+1	validated	p.D482N	1.000	30	0%	33	27.3%	254	4.3%	probably_damaging(0.975)	tolerated(0.42)	neutral(0.431)	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
APLP2	334	genome.wustl.edu	37	11	130010379	130010379	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001642.2	+1	validated	e15+1	1.000	541	0%	251	18.7%	0	-	-	-	-	-
ST14	6768	genome.wustl.edu	37	11	130068906	130068906	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021978.3	+1	reviewed	p.G583	0.940	193	0%	199	16.1%	236	48.3%	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
ST14	6768	genome.wustl.edu	37	11	130078384	130078384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021978.3	+1	reviewed	p.R692C	0.830	93	0%	76	28.9%	325	49.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
NTM	50863	genome.wustl.edu	37	11	132177621	132177621	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144058.1	+1	reviewed	p.Q189*	1.000	182	0%	62	21%	1	0%	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
NTM	50863	genome.wustl.edu	37	11	132184544	132184544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144058.1	+1	reviewed	p.T294N	1.000	217	0%	67	17.9%	1	0%	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
IGSF9B	22997	genome.wustl.edu	37	11	133790867	133790867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014987.1	-1	validated	p.S918I	1.000	45	0%	80	25%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
IGSF9B	22997	genome.wustl.edu	37	11	133792071	133792071	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014987.1	-1	validated	e17+1	1.000	246	0.4%	257	24.5%	0	-	-	-	-	-
IGSF9B	22997	genome.wustl.edu	37	11	133795671	133795671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014987.1	-1	validated	p.G666V	1.000	109	0%	95	14.7%	1	100%	benign(0.003)	tolerated(0.13)	neutral(0.253)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
IGSF9B	22997	genome.wustl.edu	37	11	133799589	133799589	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014987.1	-1	validated	p.G536	0.999	184	0%	247	22.3%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
JAM3	83700	genome.wustl.edu	37	11	134019073	134019073	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032801.3	+1	reviewed	p.I355	1.000	271	0%	186	16.7%	7	0%	-	-	-	NULL
NCAPD3	23310	genome.wustl.edu	37	11	134037890	134037890	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015261.2	-1	validated	e27+1	1.000	275	0%	150	26.7%	1	100%	-	-	-	-
NCAPD3	23310	genome.wustl.edu	37	11	134079364	134079364	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015261.2	-1	validated	p.E192A	0.985	106	0%	61	13.1%	1	0%	possibly_damaging(0.808)	tolerated(0.14)	deleterious(0.553)	superfamily_ARM-type_fold
VPS26B	112936	genome.wustl.edu	37	11	134114838	134114838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052875.3	+1	validated	p.S243Y	1.000	61	0%	71	29.6%	57	33.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Vps26
ACAD8	27034	genome.wustl.edu	37	11	134128475	134128475	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014384.2	+1	reviewed	p.L149	1.000	325	0%	261	18.4%	21	23.8%	-	-	-	HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM
ACAD8	27034	genome.wustl.edu	37	11	134128972	134128972	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014384.2	+1	reviewed	p.G187	1.000	197	0%	188	11.2%	22	22.7%	-	-	-	HMMPfam_Acyl-CoA_dh_M,superfamily_AcylCoA_dehyd_NM
GLB1L3	112937	genome.wustl.edu	37	11	134163065	134163065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080407.2	+1	validated	p.L280F	0.000	422	0%	371	22.1%	0	-	benign(0.002)	tolerated(0.48)	neutral(0.011)	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases
GLB1L3	112937	genome.wustl.edu	37	11	134181034	134181034	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080407.2	+1	validated	p.P419	0.004	121	0%	95	24.2%	0	-	-	-	-	NULL
GLB1L2	89944	genome.wustl.edu	37	11	134217261	134217261	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138342.3	+1	validated	p.Y164	0.999	280	0%	323	23.5%	6	0%	-	-	-	HMMPfam_Glyco_hydro_35,superfamily_Glyco_hydro_cat
GLB1L2	89944	genome.wustl.edu	37	11	134244871	134244871	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138342.3	+1	validated	p.I610	0.486	101	0%	125	22.4%	7	14.2%	-	-	-	NULL
SLC6A12	6539	genome.wustl.edu	37	12	319210	319210	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122847.1	-1	validated	e1-1	0.020	52	0%	52	17.3%	0	-	-	-	-	-
KDM5A	5927	genome.wustl.edu	37	12	427507	427507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042603.1	-1	reviewed	p.L888F	1.000	275	0%	90	22.2%	7	14.2%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_PLU-1
KDM5A	5927	genome.wustl.edu	37	12	438086	438086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042603.1	-1	reviewed	p.D628G	1.000	223	0%	172	34.3%	6	33.3%	benign(0.354)	tolerated(0.22)	neutral(0.154)	NULL
B4GALNT3	283358	genome.wustl.edu	37	12	661660	661660	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173593.3	+1	validated	p.I412	0.466	49	0%	47	29.8%	6	33.3%	-	-	-	NULL
WNK1	65125	genome.wustl.edu	37	12	994868	994868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018979.3	+1	reviewed	p.T1633I	0.039	320	0%	122	22.1%	13	23%	unknown(0)	tolerated(0.25)	-	NULL
WNK1	65125	genome.wustl.edu	37	12	1009702	1009702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018979.3	+1	reviewed	p.P2170H	1.000	217	0%	84	10.7%	42	9.5%	unknown(0)	deleterious(0)	-	NULL
ERC1	23085	genome.wustl.edu	37	12	1219425	1219425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178040.2	+1	reviewed	p.S410L	1.000	416	0.2%	172	22.7%	2	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Cast
ERC1	23085	genome.wustl.edu	37	12	1250888	1250888	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178040.2	+1	reviewed	p.E558*	1.000	456	0%	162	23.5%	1	0%	-	-	-	superfamily_Prefoldin,HMMPfam_Cast
CACNA2D4	93589	genome.wustl.edu	37	12	2017177	2017177	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172364.4	-1	reviewed	p.I171	1.000	54	0%	54	22.2%	0	-	-	-	-	HMMPfam_VWA_N
CACNA1C	775	genome.wustl.edu	37	12	2566783	2566783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199460.2	+1	reviewed	p.A223V	0.830	213	0%	136	20.6%	1	0%	probably_damaging(0.985)	tolerated(0.58)	neutral(0.437)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1C	775	genome.wustl.edu	37	12	2676847	2676847	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199460.2	+1	reviewed	p.F594	1.000	72	0%	56	23.2%	1	0%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1C	775	genome.wustl.edu	37	12	2694639	2694639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199460.2	+1	reviewed	p.G813R	1.000	44	0%	74	25.7%	0	-	probably_damaging(0.989)	tolerated(0.13)	deleterious(0.692)	NULL
CACNA1C	775	genome.wustl.edu	37	12	2714302	2714302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199460.2	+1	reviewed	p.L1026M	1.000	119	0%	97	20.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ITFG2	55846	genome.wustl.edu	37	12	2927452	2927452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000419778	+1	known	p.M1I	0.001	248	0%	193	23.8%	0	-	benign(0.002)	deleterious(0.03)	neutral(0.364)	NULL
TSPAN9	10867	genome.wustl.edu	37	12	3390926	3390926	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006675.4	+1	reviewed	p.W197*	1.000	154	0%	128	10.9%	14	0%	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
PRMT8	56341	genome.wustl.edu	37	12	3702307	3702307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019854.3	+1	validated	p.L382M	1.000	228	0%	106	11.3%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
C12orf4	57102	genome.wustl.edu	37	12	4599729	4599729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020374.2	-1	predicted	p.D509Y	1.000	298	0%	87	18.4%	14	28.5%	probably_damaging(0.959)	deleterious(0.03)	deleterious(0.767)	HMMPfam_DUF2362
C12orf4	57102	genome.wustl.edu	37	12	4614483	4614483	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020374.2	-1	predicted	p.N409T	1.000	371	0%	358	26.5%	6	33.3%	benign(0.35)	deleterious(0)	deleterious(0.555)	HMMPfam_DUF2362
C12orf4	57102	genome.wustl.edu	37	12	4627417	4627417	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020374.2	-1	predicted	p.A280	1.000	154	0%	81	28.4%	9	44.4%	unknown(0)	tolerated(0.06)	-	HMMPfam_DUF2362
C12orf4	57102	genome.wustl.edu	37	12	4643428	4643428	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020374.2	-1	predicted	p.S73	0.005	258	0%	160	15%	5	80%	-	-	-	HMMPfam_DUF2362
DYRK4	8798	genome.wustl.edu	37	12	4708229	4708229	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003845.1	+1	provisional	p.F199C	1.000	365	0%	198	21.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DYRK4	8798	genome.wustl.edu	37	12	4722897	4722897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003845.1	+1	provisional	p.N514S	0.018	115	0%	78	19.2%	84	46.4%	benign(0.023)	tolerated(0.37)	neutral(0.020)	NULL
AKAP3	10566	genome.wustl.edu	37	12	4735811	4735811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006422.2	-1	reviewed	p.A753T	0.000	315	0%	181	27.1%	5	40%	benign(0)	tolerated(0.73)	neutral(0.002)	HMMPfam_AKAP_110,HMMSmart_SM00807
AKAP3	10566	genome.wustl.edu	37	12	4736167	4736167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006422.2	-1	reviewed	p.A634V	0.002	72	0%	37	10.8%	2	100%	benign(0)	tolerated(0.05)	neutral(0.345)	HMMPfam_AKAP_110,HMMSmart_SM00807
AKAP3	10566	genome.wustl.edu	37	12	4736387	4736387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006422.2	-1	reviewed	p.A561T	0.000	106	0%	57	19.3%	1	100%	benign(0)	tolerated(1)	-	HMMPfam_AKAP_110,HMMSmart_SM00807
AKAP3	10566	genome.wustl.edu	37	12	4737603	4737603	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006422.2	-1	reviewed	p.V155	0.057	378	0.3%	248	28.2%	0	-	-	-	-	HMMSmart_SM00807
NDUFA9	4704	genome.wustl.edu	37	12	4763595	4763595	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005002.4	+1	reviewed	p.G63*	1.000	385	0%	146	26%	110	3.6%	-	-	-	HMMPfam_Epimerase,superfamily_NAD(P)-bd
GALNT8	26290	genome.wustl.edu	37	12	4854641	4854641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017417.1	+1	reviewed	p.V303M	0.005	234	0%	55	12.7%	0	-	possibly_damaging(0.783)	deleterious(0)	deleterious(0.738)	HMMPfam_Glycos_transf_2,superfamily_SSF53448
GALNT8	26290	genome.wustl.edu	37	12	4854727	4854727	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017417.1	+1	reviewed	p.L331	0.062	240	0%	77	11.7%	0	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_SSF53448
KCNA6	3742	genome.wustl.edu	37	12	4920430	4920430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002235.3	+1	reviewed	p.S408N	1.000	268	0%	304	20.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ion_trans,superfamily_SSF81324
KCNA5	3741	genome.wustl.edu	37	12	5154785	5154785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002234.2	+1	reviewed	p.V491A	0.387	192	0%	200	14.5%	0	-	benign(0.235)	tolerated(0.2)	neutral(0.073)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KCNA5	3741	genome.wustl.edu	37	12	5154914	5154914	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002234.2	+1	reviewed	p.V534G	0.000	190	0%	198	24.2%	0	-	benign(0.025)	tolerated(0.2)	neutral(0.050)	NULL
ANO2	57101	genome.wustl.edu	37	12	5744396	5744396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020373.2	-1	validated	p.A580S	0.999	217	0%	188	26.6%	0	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
ANO2	57101	genome.wustl.edu	37	12	5842032	5842032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020373.2	-1	validated	p.Q478H	1.000	551	0%	229	18.3%	0	-	possibly_damaging(0.859)	deleterious(0.03)	deleterious(0.697)	NULL
VWF	7450	genome.wustl.edu	37	12	6120886	6120886	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000552.3	-1	reviewed	p.K1913	0.997	70	0%	52	25%	26	0%	-	-	-	NULL
VWF	7450	genome.wustl.edu	37	12	6125704	6125704	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000552.3	-1	reviewed	p.R1763	0.229	113	0%	87	19.5%	27	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
VWF	7450	genome.wustl.edu	37	12	6127628	6127628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000552.3	-1	reviewed	p.Q1652H	0.648	40	0%	38	28.9%	20	0%	benign(0)	tolerated(0.15)	neutral(0.241)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
PLEKHG6	55200	genome.wustl.edu	37	12	6425047	6425047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144856.1	+1	validated	p.G190S	0.784	48	0%	65	23.1%	4	50%	probably_damaging(0.995)	tolerated(0.36)	deleterious(0.478)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
CD27	939	genome.wustl.edu	37	12	6554653	6554653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001242.4	+1	reviewed	p.P67L	0.014	149	0%	93	17.2%	74	1.3%	benign(0.009)	tolerated(0.17)	neutral(0.059)	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
MRPL51	51258	genome.wustl.edu	37	12	6601586	6601586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016497.3	-1	reviewed	p.L80I	1.000	642	0%	727	26%	381	45.6%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_MRP-L51
NCAPD2	9918	genome.wustl.edu	37	12	6604312	6604312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014865.3	+1	validated	p.E16D	0.788	511	0%	554	21.5%	14	71.4%	possibly_damaging(0.787)	tolerated(1)	neutral(0.294)	NULL
NCAPD2	9918	genome.wustl.edu	37	12	6634800	6634800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014865.3	+1	validated	p.L756M	1.000	226	0%	198	19.7%	44	50%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	superfamily_ARM repeat
IFFO1	25900	genome.wustl.edu	37	12	6650772	6650772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039670.1	-1	validated	p.H498Y	1.000	123	0%	134	26.9%	12	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
IFFO1	25900	genome.wustl.edu	37	12	6657977	6657977	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000416019	-1	known	p.G96V	1.000	32	0%	34	20.6%	7	0%	-	-	-	NULL
IFFO1	25900	genome.wustl.edu	37	12	6658970	6658970	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000416019	-1	known	p.A73V	0.533	120	0%	125	28%	9	0%	-	-	-	NULL
NOP2	4839	genome.wustl.edu	37	12	6666637	6666637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033714.1	-1	validated	p.S650Y	0.018	585	0.3%	658	24.5%	87	34.4%	possibly_damaging(0.805)	deleterious(0.04)	deleterious(0.652)	NULL
NOP2	4839	genome.wustl.edu	37	12	6669658	6669658	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033714.1	-1	validated	p.T501	0.603	94	0%	102	11.8%	66	13.6%	-	-	-	HMMPfam_Nol1_Nop2_Fmu,superfamily_SSF53335
CHD4	1108	genome.wustl.edu	37	12	6690253	6690253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001273.2	-1	reviewed	p.E1622D	0.988	500	0%	423	18.9%	112	32.1%	benign(0.133)	tolerated(0.33)	neutral(0.035)	NULL
CHD4	1108	genome.wustl.edu	37	12	6691351	6691351	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001273.2	-1	reviewed	p.R1489	0.997	160	0%	123	16.3%	155	39.3%	-	-	-	HMMPfam_DUF1086
CHD4	1108	genome.wustl.edu	37	12	6696909	6696909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001273.2	-1	reviewed	p.E1224D	1.000	181	0%	125	23.2%	75	38.6%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD4	1108	genome.wustl.edu	37	12	6710471	6710471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001273.2	-1	reviewed	p.K261N	1.000	124	0%	119	16.8%	26	23%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
CHD4	1108	genome.wustl.edu	37	12	6711613	6711613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001273.2	-1	reviewed	p.L51I	1.000	847	0%	881	11.6%	9	33.3%	benign(0.35)	tolerated(0.36)	neutral(0.131)	NULL
LPAR5	57121	genome.wustl.edu	37	12	6729440	6729440	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142961.1	-1	reviewed	p.T325	0.000	26	0%	11	36.4%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
ACRBP	84519	genome.wustl.edu	37	12	6754473	6754473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032489.2	-1	reviewed	p.L130F	0.568	581	0%	583	23%	1	100%	unknown(0)	-	-	HMMPfam_PBP_sp32
C12orf53	196500	genome.wustl.edu	37	12	6806744	6806744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153685.2	-1	predicted	p.R78W	0.719	48	0%	38	21.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CDCA3	83461	genome.wustl.edu	37	12	6958492	6958492	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031299.4	-1	validated	p.R216*	0.180	537	0%	448	25.2%	43	18.6%	-	-	-	NULL
CDCA3	83461	genome.wustl.edu	37	12	6958584	6958584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031299.4	-1	validated	p.R185H	0.000	523	0%	431	20.4%	34	14.7%	benign(0.005)	tolerated(0.32)	neutral(0.024)	NULL
USP5	8078	genome.wustl.edu	37	12	6970686	6970686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098536.1	+1	validated	p.Q526H	1.000	65	0%	56	37.5%	70	44.2%	benign(0.133)	tolerated(0.08)	neutral(0.311)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP5	8078	genome.wustl.edu	37	12	6973293	6973293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098536.1	+1	validated	p.D726E	1.000	203	0%	176	24.4%	80	42.5%	benign(0)	tolerated(1)	-	HMMPfam_UBA,HMMPfam_UCH,superfamily_UBA-like,HMMSmart_SM00165,superfamily_Cysteine proteinases
ATN1	1822	genome.wustl.edu	37	12	7044986	7044986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007026.1	+1	reviewed	p.H186Y	0.945	212	0%	219	30.1%	37	43.2%	possibly_damaging(0.873)	tolerated(0.39)	neutral(0.355)	HMMPfam_Atrophin-1
PTPN6	5777	genome.wustl.edu	37	12	7060792	7060792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080549.3	+1	reviewed	p.S10N	0.999	44	0%	49	20.4%	28	25%	possibly_damaging(0.687)	tolerated(0.15)	deleterious(0.486)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
PHB2	11331	genome.wustl.edu	37	12	7076360	7076360	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144831.1	-1	validated	p.R255*	1.000	274	0%	191	14.7%	385	4.6%	-	-	-	NULL
PHB2	11331	genome.wustl.edu	37	12	7077628	7077628	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144831.1	-1	validated	p.L141	1.000	197	0%	143	18.2%	205	3.9%	-	-	-	HMMPfam_Band_7,HMMSmart_SM00244
LPCAT3	10162	genome.wustl.edu	37	12	7086807	7086807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005768.5	-1	validated	p.L381M	1.000	238	0%	145	17.9%	64	40.6%	possibly_damaging(0.644)	tolerated(0.05)	deleterious(0.571)	HMMPfam_MBOAT
C1S	716	genome.wustl.edu	37	12	7175770	7175770	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001734.3	+1	reviewed	p.H402	0.026	477	0%	256	25.4%	162	20.3%	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
C1S	716	genome.wustl.edu	37	12	7177214	7177214	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001734.3	+1	reviewed	p.S442	0.000	116	0%	63	15.9%	157	2.5%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
C1RL	51279	genome.wustl.edu	37	12	7254516	7254516	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016546.2	-1	validated	p.F156	1.000	103	0%	60	18.3%	34	38.2%	unknown(0)	-	-	HMMSmart_CUB,superfamily_CUB
CLSTN3	9746	genome.wustl.edu	37	12	7302240	7302240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014718.3	+1	validated	p.Q732H	1.000	140	0.7%	119	11.8%	34	2.9%	benign(0.106)	tolerated(0.41)	neutral(0.023)	NULL
ACSM4	341392	genome.wustl.edu	37	12	7459137	7459137	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080454.1	+1	provisional	p.E70	0.994	161	0%	51	25.5%	0	-	-	-	-	superfamily_SSF56801
CD163L1	283316	genome.wustl.edu	37	12	7531666	7531666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174941.4	-1	reviewed	p.T760N	0.580	76	0%	41	26.8%	0	-	possibly_damaging(0.862)	tolerated(0.52)	neutral(0.342)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
APOBEC1	339	genome.wustl.edu	37	12	7802162	7802162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001644.3	-1	reviewed	p.P231H	0.001	614	0.2%	543	20.6%	0	-	possibly_damaging(0.592)	deleterious(0.03)	deleterious(0.569)	NULL
GDF3	9573	genome.wustl.edu	37	12	7842857	7842857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020634.1	-1	reviewed	p.L238I	1.000	179	0%	113	24.8%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
SLC2A3	6515	genome.wustl.edu	37	12	8078525	8078525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006931.2	-1	validated	p.G294E	0.953	476	0%	339	26%	7	0%	benign(0.057)	tolerated(0.43)	neutral(0.017)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
SLC2A3	6515	genome.wustl.edu	37	12	8082281	8082281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006931.2	-1	validated	p.A287V	1.000	400	0%	176	23.3%	7	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
CLEC4E	26253	genome.wustl.edu	37	12	8687340	8687340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014358.2	-1	reviewed	p.S185Y	0.844	354	0%	283	13.8%	27	0%	benign(0.258)	tolerated(1)	neutral(0.027)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
MFAP5	8076	genome.wustl.edu	37	12	8802116	8802116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003480.2	-1	reviewed	p.K130N	0.999	853	0%	510	21.8%	56	51.7%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_MAGP
RIMKLB	57494	genome.wustl.edu	37	12	8906555	8906555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020734.2	+1	validated	p.A188V	1.000	439	0%	106	20.8%	41	53.6%	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMPfam_RimK,superfamily_Glutathione synthetase ATP-binding domain-like
A2ML1	144568	genome.wustl.edu	37	12	8975886	8975886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144670.3	+1	validated	p.E57D	1.000	277	0%	166	22.3%	1	0%	possibly_damaging(0.916)	tolerated(0.33)	neutral(0.391)	HMMPfam_A2M_N
A2ML1	144568	genome.wustl.edu	37	12	8995748	8995748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144670.3	+1	validated	p.D423Y	0.964	181	0%	115	14.8%	0	-	probably_damaging(0.955)	deleterious(0.03)	deleterious(0.763)	NULL
A2ML1	144568	genome.wustl.edu	37	12	9020488	9020488	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144670.3	+1	validated	p.Y1256	0.006	325	0.3%	128	23.4%	0	-	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases
PHC1	1911	genome.wustl.edu	37	12	9087075	9087075	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004426.2	+1	reviewed	e9+1	1.000	86	0%	66	18.2%	2	100%	-	-	-	-
A2M	2	genome.wustl.edu	37	12	9225262	9225262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000014.4	-1	reviewed	p.C1321Y	1.000	347	0.3%	268	20.5%	307	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
A2M	2	genome.wustl.edu	37	12	9243004	9243004	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000014.4	-1	reviewed	p.I848	1.000	335	0.6%	300	26%	109	0%	-	-	-	NULL
A2M	2	genome.wustl.edu	37	12	9252092	9252092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000014.4	-1	reviewed	p.P529H	0.000	237	0%	247	21.1%	103	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_A2M_N_2
DDX11L8	100302090	genome.wustl.edu	37	12	9451404	9451404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000341155	+1	known	p.S276N	0.093	572	0%	477	13.4%	2	0%	-	-	-	HMMSmart_SM00488,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC100286917	100286917	genome.wustl.edu	37	12	9571259	9571259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343147.1	+1	model	p.V113A	0.000	463	0%	320	9.7%	16	6.2%	-	-	-	NULL
DDX12P	440081	genome.wustl.edu	37	12	9582181	9582181	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000432996	-1	known	p.L422	1.000	419	0%	381	8.1%	2	0%	-	-	-	HMMSmart_SM00488
CD69	969	genome.wustl.edu	37	12	9907629	9907629	+	RNA	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_026672.1	-1	reviewed	NULL	0.000	46	0%	38	21.1%	0	-	-	-	-	-
CLEC12A	160364	genome.wustl.edu	37	12	10131965	10131965	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138337.5	+1	reviewed	p.K74T	0.048	161	0%	44	20.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CLEC7A	64581	genome.wustl.edu	37	12	10280409	10280409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_197947.2	-1	reviewed	p.A47T	0.902	231	0%	224	18.8%	11	0%	benign(0.1)	tolerated(0.17)	neutral(0.067)	HMMPfam_Ly49
GABARAPL1	23710	genome.wustl.edu	37	12	10373129	10373129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031412.2	+1	validated	p.T87I	1.000	381	0%	337	24.9%	32	18.7%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like
GABARAPL1	23710	genome.wustl.edu	37	12	10374426	10374426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031412.2	+1	validated	p.S110N	1.000	414	0%	378	21.4%	21	14.2%	possibly_damaging(0.454)	deleterious(0)	deleterious(0.593)	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like
PRR4	11272	genome.wustl.edu	37	12	11000974	11000974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098538.1	-1	validated	p.P46S	0.000	312	0%	118	20.3%	3	66.6%	possibly_damaging(0.949)	-	-	NULL
PRB2	653247	genome.wustl.edu	37	12	11545836	11545836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006248.3	-1	validated	p.Q392H	0.001	340	0.3%	155	15.5%	0	-	unknown(0)	tolerated(0.16)	-	NULL
ETV6	2120	genome.wustl.edu	37	12	11803078	11803078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001987.4	+1	reviewed	p.A6V	1.000	142	0%	184	27.2%	8	75%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ETV6	2120	genome.wustl.edu	37	12	12006453	12006453	+	Missense_Mutation	SNP	C	C	T	rs146150601	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001987.4	+1	reviewed	p.H141Y	1.000	534	0%	280	21.1%	7	14.2%	possibly_damaging(0.838)	deleterious(0.03)	deleterious(0.684)	NULL
LRP6	4040	genome.wustl.edu	37	12	12332866	12332866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002336.2	-1	reviewed	p.A475T	1.000	294	0%	142	19.7%	1	0%	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
LOC100288143	100288143	genome.wustl.edu	37	12	12618762	12618762	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343156.1	-1	model	p.V7	0.097	12	0%	10	60%	22	22.7%	-	-	-	NULL
GPRC5D	55507	genome.wustl.edu	37	12	13102585	13102585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018654.1	-1	reviewed	p.A245D	1.000	236	0%	69	18.8%	0	-	benign(0.21)	deleterious(0)	neutral(0.465)	HMMPfam_7tm_3
HEBP1	50865	genome.wustl.edu	37	12	13153044	13153044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015987.3	-1	reviewed	p.L2S	1.000	23	0%	40	15%	13	38.4%	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	NULL
GRIN2B	2904	genome.wustl.edu	37	12	13716898	13716898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000834.3	-1	reviewed	p.R1092W	1.000	93	0%	88	15.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NMDAR2_C
GRIN2B	2904	genome.wustl.edu	37	12	13768199	13768199	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000834.3	-1	reviewed	p.V501	1.000	204	0%	96	27.1%	0	-	-	-	-	HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53850
ATF7IP	55729	genome.wustl.edu	37	12	14613677	14613677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018179.3	+1	validated	p.G803W	1.000	317	0%	108	22.2%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GUCY2C	2984	genome.wustl.edu	37	12	14834401	14834401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004963.3	-1	validated	p.A208T	1.000	339	0%	66	18.2%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
WBP11	51729	genome.wustl.edu	37	12	14946666	14946666	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016312.2	-1	reviewed	p.S304	1.000	536	0%	386	24.4%	92	43.4%	unknown(0)	-	-	NULL
C12orf60	144608	genome.wustl.edu	37	12	14976169	14976169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175874.3	+1	validated	p.K100N	0.059	244	0%	109	18.3%	9	11.1%	benign(0.048)	tolerated(0.24)	neutral(0.041)	NULL
ART4	420	genome.wustl.edu	37	12	14993967	14993967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021071.2	-1	reviewed	p.A89S	0.000	186	0%	86	10.5%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	HMMPfam_ART,superfamily_ADP-ribosylation
MGP	4256	genome.wustl.edu	37	12	15035143	15035143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000900.2	-1	validated	p.R81H	1.000	235	0%	55	25.5%	208	0%	probably_damaging(0.998)	tolerated(0.18)	deleterious(0.530)	HMMPfam_Gla,HMMSmart_GLA,PatternScan_GLA_1,superfamily_VitK_dep_GLA
PTPRO	5800	genome.wustl.edu	37	12	15679170	15679170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030667.1	+1	reviewed	p.T713I	1.000	201	0%	50	18%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PTPRO	5800	genome.wustl.edu	37	12	15704516	15704516	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030667.1	+1	reviewed	p.I823	1.000	564	0%	187	26.2%	2	0%	-	-	-	NULL
EPS8	2059	genome.wustl.edu	37	12	15823789	15823789	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004447.5	-1	reviewed	e3+1	1.000	315	0%	174	23.6%	0	-	-	-	-	-
STRAP	11171	genome.wustl.edu	37	12	16055879	16055879	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007178.3	+1	validated	p.C340	1.000	179	0%	169	23.1%	189	42.8%	-	-	-	NULL
DERA	51071	genome.wustl.edu	37	12	16135350	16135350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015954.2	+1	validated	p.S206I	1.000	447	0%	321	14.3%	32	28.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DeoC,superfamily_SSF51569
SLC15A5	729025	genome.wustl.edu	37	12	16425577	16425577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000344941	-1	known	p.G168C	1.000	303	0%	75	24%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PTR2
PIK3C2G	5288	genome.wustl.edu	37	12	18649004	18649004	+	Silent	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004570.4	+1	reviewed	p.S893	0.961	561	0.2%	778	12.5%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
PIK3C2G	5288	genome.wustl.edu	37	12	18715663	18715663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004570.4	+1	reviewed	p.F1165S	1.000	200	0%	124	19.4%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
PIK3C2G	5288	genome.wustl.edu	37	12	18719941	18719941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004570.4	+1	reviewed	p.L1280I	1.000	260	0.4%	216	17.6%	0	-	probably_damaging(0.999)	tolerated(0.42)	deleterious(0.504)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
CAPZA3	93661	genome.wustl.edu	37	12	18891767	18891767	+	Missense_Mutation	SNP	A	A	C	rs61740731		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033328.2	+1	reviewed	p.I189L	0.829	269	0%	74	31.1%	0	-	benign(0.011)	tolerated(1)	neutral(0.001)	HMMPfam_F-actin_cap_A,superfamily_SSF90096
PLEKHA5	54477	genome.wustl.edu	37	12	19459429	19459429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000309364	+1	known	p.L648M	0.102	33	0%	24	16.7%	1	0%	unknown(0)	-	-	NULL
PLEKHA5	54477	genome.wustl.edu	37	12	19499950	19499950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143821.1	+1	validated	p.R734H	1.000	191	0%	181	21.5%	0	-	benign(0.126)	tolerated(0.09)	neutral(0.307)	NULL
PYROXD1	79912	genome.wustl.edu	37	12	21598280	21598280	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024854.3	+1	validated	e3-1	1.000	106	0%	112	28.6%	0	-	-	-	-	-
RECQL	5965	genome.wustl.edu	37	12	21630852	21630852	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002907.3	-1	reviewed	p.I251N	0.945	260	0%	97	15.5%	12	41.6%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
RECQL	5965	genome.wustl.edu	37	12	21630862	21630862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002907.3	-1	reviewed	p.A248T	0.021	260	0.8%	98	30.6%	10	60%	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
GYS2	2998	genome.wustl.edu	37	12	21695455	21695455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021957.3	-1	reviewed	p.E540D	1.000	85	0%	45	17.8%	0	-	benign(0.334)	tolerated(0.29)	neutral(0.134)	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
GYS2	2998	genome.wustl.edu	37	12	21757407	21757407	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021957.3	-1	reviewed	p.V41fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Glycogen_syn
KCNJ8	3764	genome.wustl.edu	37	12	21919525	21919525	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004982.2	-1	reviewed	p.E136A	1.000	219	0%	138	26.1%	2	0%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_IRK,superfamily_SSF81324
ABCC9	10060	genome.wustl.edu	37	12	21998544	21998544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005691.2	-1	reviewed	p.A1030V	0.757	282	0%	107	24.3%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC9	10060	genome.wustl.edu	37	12	22015924	22015924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005691.2	-1	reviewed	p.E768K	1.000	279	0%	106	14.2%	0	-	possibly_damaging(0.827)	deleterious(0.02)	deleterious(0.697)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC9	10060	genome.wustl.edu	37	12	22059085	22059085	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005691.2	-1	reviewed	p.T531	1.000	523	0.2%	186	19.4%	1	0%	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC9	10060	genome.wustl.edu	37	12	22068672	22068672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005691.2	-1	reviewed	p.G249E	1.000	404	0%	144	21.5%	0	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
KIAA0528	9847	genome.wustl.edu	37	12	22635554	22635554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014802.1	-1	predicted	p.M558I	1.000	552	0%	140	25.7%	7	42.8%	benign(0.137)	deleterious(0.02)	neutral(0.395)	NULL
ETNK1	55500	genome.wustl.edu	37	12	22796866	22796866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018638.4	+1	reviewed	p.L198P	1.000	246	0%	84	13.1%	19	31.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Choline_kinase,superfamily_Kinase_like
SOX5	6660	genome.wustl.edu	37	12	23908599	23908599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006940.4	-1	reviewed	p.G181R	1.000	564	0%	182	19.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
BCAT1	586	genome.wustl.edu	37	12	25054777	25054777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005504.6	-1	reviewed	p.G17R	0.013	242	0%	254	13.8%	4	0%	benign(0.372)	deleterious(0.02)	deleterious(0.502)	NULL
LRMP	4033	genome.wustl.edu	37	12	25242996	25242996	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006152.2	+1	reviewed	p.E157	0.999	413	0%	151	29.1%	0	-	-	-	-	HMMPfam_MRVI1
IFLTD1	160492	genome.wustl.edu	37	12	25671820	25671820	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145728.1	-1	validated	p.C366	0.118	258	0%	305	23.3%	0	-	-	-	-	NULL
RASSF8	11228	genome.wustl.edu	37	12	26217804	26217804	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007211.4	+1	validated	p.C159	0.956	73	0%	53	20.8%	0	-	-	-	-	NULL
RASSF8	11228	genome.wustl.edu	37	12	26221695	26221695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000405154	+1	known	p.R402C	0.998	276	0%	164	23.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITPR2	3709	genome.wustl.edu	37	12	26750028	26750028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002223.2	-1	validated	p.D1348Y	1.000	194	0%	82	22%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RYDR_ITPR
ASUN	55726	genome.wustl.edu	37	12	27066586	27066586	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018164.2	-1	validated	p.E537*	1.000	600	0%	265	25.3%	24	8.3%	-	-	-	HMMPfam_DUF2151
FGFR1OP2	26127	genome.wustl.edu	37	12	27109491	27109491	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015633.2	+1	validated	p.Q51*	1.000	114	0%	36	25%	23	4.3%	-	-	-	HMMPfam_DUF837
TM7SF3	51768	genome.wustl.edu	37	12	27128584	27128584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016551.2	-1	validated	p.I432T	1.000	232	0%	65	38.5%	40	30%	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
STK38L	23012	genome.wustl.edu	37	12	27470948	27470948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015000.3	+1	validated	p.L359F	1.000	211	0%	137	16.8%	6	50%	benign(0.027)	tolerated(0.09)	neutral(0.298)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ARNTL2	56938	genome.wustl.edu	37	12	27555593	27555593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020183.3	+1	provisional	p.S487N	0.994	475	0%	269	22.7%	10	30%	benign(0.418)	deleterious(0.04)	deleterious(0.484)	NULL
C12orf70	341346	genome.wustl.edu	37	12	27647251	27647251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145010.1	+1	validated	p.V207F	1.000	411	0%	193	20.2%	0	-	benign(0.278)	deleterious(0.02)	neutral(0.413)	NULL
PPFIBP1	8496	genome.wustl.edu	37	12	27832958	27832958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003622.2	+1	reviewed	p.R620Q	0.998	148	0%	35	11.4%	13	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000245593	0	genome.wustl.edu	37	12	29446221	29446221	+	RNA	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000500230	-1	known	NULL	0.234	497	0%	448	18.8%	0	-	-	-	-	-
OVCH1	341350	genome.wustl.edu	37	12	29598312	29598312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183378.2	-1	validated	p.Y927C	0.009	228	0%	120	19.2%	0	-	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
OVCH1	341350	genome.wustl.edu	37	12	29608262	29608262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183378.2	-1	validated	p.A786D	0.000	139	0%	32	25%	0	-	possibly_damaging(0.513)	tolerated(0.43)	neutral(0.186)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
OVCH1	341350	genome.wustl.edu	37	12	29617603	29617603	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183378.2	-1	validated	p.E654D	0.051	222	0%	48	12.5%	0	-	benign(0.099)	tolerated(0.43)	neutral(0.021)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
OVCH1	341350	genome.wustl.edu	37	12	29648217	29648217	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183378.2	-1	validated	e4+1	0.927	335	0%	224	23.7%	0	-	-	-	-	-
TMTC1	83857	genome.wustl.edu	37	12	29709803	29709803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175861.2	-1	provisional	p.G447W	1.000	467	0%	191	18.8%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_Protein prenylyltransferase
IPO8	10526	genome.wustl.edu	37	12	30805925	30805925	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006390.2	-1	reviewed	p.Q684*	1.000	124	0%	58	13.8%	3	0%	-	-	-	superfamily_ARM-type_fold
CAPRIN2	65981	genome.wustl.edu	37	12	30863357	30863357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002259.1	-1	validated	p.E955K	0.996	105	0%	55	32.7%	7	42.8%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
TSPAN11	441631	genome.wustl.edu	37	12	31131514	31131514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080509.2	+1	validated	p.V99I	0.963	521	0.2%	398	14.3%	0	-	benign(0.001)	tolerated(1)	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
DDX11	1663	genome.wustl.edu	37	12	31242049	31242049	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152438.1	+1	reviewed	p.G252	0.978	490	0%	458	19.2%	8	25%	-	-	-	HMMSmart_SM00488,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases
DENND5B	160518	genome.wustl.edu	37	12	31551144	31551144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144973.3	-1	validated	p.R1074K	1.000	283	0%	113	13.3%	2	50%	benign(0.018)	tolerated(0.12)	neutral(0.261)	NULL
DENND5B	160518	genome.wustl.edu	37	12	31605218	31605218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144973.3	-1	validated	p.V429I	1.000	229	0%	154	18.8%	5	60%	benign(0.009)	tolerated(0.32)	neutral(0.025)	NULL
METTL20	254013	genome.wustl.edu	37	12	31815056	31815056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135863.1	+1	validated	p.V57F	0.996	218	0%	211	23.2%	3	33.3%	probably_damaging(0.961)	deleterious(0.02)	deleterious(0.787)	NULL
METTL20	254013	genome.wustl.edu	37	12	31820592	31820592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135863.1	+1	validated	p.A153S	1.000	66	0%	56	28.6%	4	50%	possibly_damaging(0.948)	tolerated(0.09)	deleterious(0.688)	HMMPfam_Methyltransf_16,superfamily_SSF53335
METTL20	254013	genome.wustl.edu	37	12	31820697	31820697	+	Missense_Mutation	SNP	G	G	A	rs143179970	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135863.1	+1	validated	p.D188N	1.000	318	0%	231	23.8%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Methyltransf_16,superfamily_SSF53335
C12orf35	55196	genome.wustl.edu	37	12	32135757	32135757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018169.3	+1	validated	p.T623N	0.001	133	0%	50	26%	20	45%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
BICD1	636	genome.wustl.edu	37	12	32446945	32446945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001714.2	+1	reviewed	p.E148D	1.000	271	0%	132	15.9%	3	0%	probably_damaging(0.984)	tolerated(0.12)	deleterious(0.691)	HMMPfam_BicD
FGD4	121512	genome.wustl.edu	37	12	32778686	32778686	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139241.2	+1	reviewed	p.R578	0.918	209	0%	90	24.4%	5	80%	-	-	-	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger
CPNE8	144402	genome.wustl.edu	37	12	39242431	39242431	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153634.2	-1	reviewed	p.N74H	1.000	148	0%	55	18.2%	3	33.3%	possibly_damaging(0.607)	deleterious(0.04)	deleterious(0.559)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
ABCD2	225	genome.wustl.edu	37	12	39967520	39967520	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005164.3	-1	reviewed	p.L667	1.000	183	0%	130	20%	3	0%	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
C12orf40	283461	genome.wustl.edu	37	12	40076436	40076436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031748.2	+1	validated	p.T237N	0.000	258	0%	136	20.6%	0	-	probably_damaging(0.998)	-	-	NULL
LRRK2	120892	genome.wustl.edu	37	12	40687400	40687400	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198578.3	+1	reviewed	p.E915*	1.000	320	0%	88	21.6%	1	0%	-	-	-	superfamily_SSF52058
LRRK2	120892	genome.wustl.edu	37	12	40715894	40715894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198578.3	+1	reviewed	p.S1743Y	1.000	236	0%	154	18.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CNTN1	1272	genome.wustl.edu	37	12	41312514	41312514	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001843.2	+1	reviewed	p.S56	0.961	213	0%	111	22.5%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
CNTN1	1272	genome.wustl.edu	37	12	41422975	41422975	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001843.2	+1	reviewed	p.A978	0.998	333	0.3%	101	19.8%	3	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PDZRN4	29951	genome.wustl.edu	37	12	41966364	41966364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013377.3	+1	validated	p.L337M	0.002	195	0%	63	23.8%	0	-	benign(0.005)	tolerated(0.08)	neutral(0.300)	NULL
PDZRN4	29951	genome.wustl.edu	37	12	41967269	41967269	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013377.3	+1	validated	p.D638	0.939	95	1.1%	31	25.8%	0	-	-	-	-	NULL
ENSG00000248189	0	genome.wustl.edu	37	12	42854498	42854498	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000510816	+1	known	NULL	0.000	130	0%	70	24.3%	0	-	-	-	-	-
ADAMTS20	80070	genome.wustl.edu	37	12	43777427	43777427	+	Silent	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025003.3	-1	validated	p.S1577	0.827	537	0.2%	258	24%	0	-	-	-	-	NULL
ADAMTS20	80070	genome.wustl.edu	37	12	43819371	43819371	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025003.3	-1	validated	p.C1410W	1.000	386	0%	167	16.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS20	80070	genome.wustl.edu	37	12	43828059	43828059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025003.3	-1	validated	p.D903E	1.000	372	0%	136	21.3%	0	-	benign(0.032)	tolerated(0.2)	neutral(0.051)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS20	80070	genome.wustl.edu	37	12	43896195	43896195	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025003.3	-1	validated	p.K209	0.978	309	0%	457	22.8%	0	-	-	-	-	NULL
PUS7L	83448	genome.wustl.edu	37	12	44148233	44148233	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098614.1	-1	validated	p.P272	0.001	502	0%	662	20.7%	0	-	-	-	-	HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom
IRAK4	51135	genome.wustl.edu	37	12	44171544	44171544	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114182.2	+1	reviewed	p.C276*	0.998	429	0%	223	26%	11	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TMEM117	84216	genome.wustl.edu	37	12	44605151	44605151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032256.1	+1	provisional	p.V197I	0.669	291	0%	58	13.8%	3	0%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
PLEKHA8P1	51054	genome.wustl.edu	37	12	45567654	45567654	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015899.1	-1	provisional	p.N165K	0.000	389	0%	464	20.5%	3	33.3%	-	-	-	NULL
ARID2	196528	genome.wustl.edu	37	12	46245388	46245388	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000422737	+1	known	p.Q1135*	1.000	157	0%	49	30.6%	4	0%	probably_damaging(0.99)	tolerated(0.15)	deleterious(0.682)	NULL
ARID2	196528	genome.wustl.edu	37	12	46285633	46285633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152641.2	+1	validated	p.G1665W	1.000	398	0%	235	26.4%	9	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SLC38A1	81539	genome.wustl.edu	37	12	46602837	46602837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077484.1	-1	validated	p.G130C	1.000	281	0%	85	21.2%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aa_trans
SLC38A4	55089	genome.wustl.edu	37	12	47172496	47172496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143824.1	-1	validated	p.L261M	0.985	182	0%	50	26%	0	-	benign(0)	tolerated(0.24)	neutral(0.037)	HMMPfam_Aa_trans
SLC38A4	55089	genome.wustl.edu	37	12	47181766	47181766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143824.1	-1	validated	p.A87T	1.000	188	0%	33	30.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aa_trans
AMIGO2	347902	genome.wustl.edu	37	12	47471693	47471693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143668.1	-1	validated	p.A365T	1.000	232	0%	345	13.6%	5	0%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
RPAP3	79657	genome.wustl.edu	37	12	48080621	48080621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024604.2	-1	reviewed	p.D312Y	1.000	495	0%	228	14.5%	23	13%	probably_damaging(1)	tolerated(0.74)	deleterious(0.501)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
ENDOU	8909	genome.wustl.edu	37	12	48104646	48104646	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006025.3	-1	reviewed	p.K350T	1.000	291	0%	279	22.9%	0	-	benign(0.378)	tolerated(0.06)	neutral(0.443)	NULL
RAPGEF3	10411	genome.wustl.edu	37	12	48132029	48132029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098531.2	-1	validated	p.R843I	0.981	64	0%	62	21%	21	47.6%	benign(0.092)	deleterious(0.02)	neutral(0.390)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
HDAC7	51564	genome.wustl.edu	37	12	48185078	48185078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015401.3	-1	reviewed	p.Q649H	1.000	90	0%	104	20.2%	63	31.7%	possibly_damaging(0.941)	tolerated(0.18)	neutral(0.443)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
COL2A1	1280	genome.wustl.edu	37	12	48368002	48368002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001844.4	-1	reviewed	p.S1396N	1.000	302	0%	230	19.6%	1	0%	unknown(0)	deleterious(0)	-	HMMPfam_COLFI,HMMSmart_SM00038
COL2A1	1280	genome.wustl.edu	37	12	48376376	48376376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001844.4	-1	reviewed	p.A737V	0.883	36	0%	35	20%	0	-	unknown(0)	tolerated(0.55)	-	HMMPfam_Collagen
SENP1	29843	genome.wustl.edu	37	12	48442882	48442882	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014554.2	-1	validated	p.R481*	1.000	205	0.5%	44	22.7%	4	25%	-	-	-	HMMPfam_Peptidase_C48,superfamily_SSF54001
PFKM	5213	genome.wustl.edu	37	12	48501950	48501950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000340802	+1	known	p.V60M	0.000	255	0%	225	21.8%	3	0%	possibly_damaging(0.952)	-	-	NULL
PFKM	5213	genome.wustl.edu	37	12	48528026	48528026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000289.5	+1	reviewed	p.T202I	0.998	358	0%	122	27%	17	76.4%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	HMMPfam_PFK,superfamily_Phosphofructokinase
PFKM	5213	genome.wustl.edu	37	12	48529158	48529158	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000289.5	+1	reviewed	p.R310*	0.999	309	0%	90	18.9%	16	6.2%	-	-	-	HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE
PFKM	5213	genome.wustl.edu	37	12	48535135	48535135	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000289.5	+1	reviewed	p.G461	0.991	182	0%	68	20.6%	18	27.7%	-	-	-	HMMPfam_PFK,superfamily_Phosphofructokinase
PFKM	5213	genome.wustl.edu	37	12	48538839	48538839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000289.5	+1	reviewed	p.R673M	1.000	435	0%	223	24.7%	37	43.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE
C12orf54	121273	genome.wustl.edu	37	12	48884616	48884616	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152319.3	+1	validated	p.R64*	1.000	301	0%	230	26.1%	1	0%	-	-	-	NULL
LOC100288297	100288297	genome.wustl.edu	37	12	49075181	49075181	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343165.1	+1	model	p.W30*	0.949	628	0%	711	14.2%	19	26.3%	benign(0.029)	tolerated(0.4)	neutral(0.018)	NULL
ADCY6	112	genome.wustl.edu	37	12	49166085	49166085	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015270.3	-1	reviewed	p.K927T	1.000	126	0%	115	21.7%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADCY6	112	genome.wustl.edu	37	12	49168286	49168286	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015270.3	-1	reviewed	p.L728	1.000	178	0%	128	28.1%	11	63.6%	-	-	-	NULL
ADCY6	112	genome.wustl.edu	37	12	49170333	49170333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015270.3	-1	reviewed	p.M471I	1.000	57	0%	62	25.8%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
ADCY6	112	genome.wustl.edu	37	12	49171487	49171487	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015270.3	-1	reviewed	p.H349	0.667	405	0%	364	11.8%	11	18.1%	-	-	-	HMMSmart_SM00044
CACNB3	784	genome.wustl.edu	37	12	49218732	49218732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000725.2	+1	validated	p.A158V	1.000	188	0%	190	19.5%	4	0%	benign(0.006)	tolerated(0.14)	neutral(0.249)	superfamily_SH3-domain
CACNB3	784	genome.wustl.edu	37	12	49219247	49219247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000725.2	+1	validated	p.D202N	1.000	160	0%	165	22.4%	18	16.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARF3	377	genome.wustl.edu	37	12	49333511	49333511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001659.2	-1	reviewed	p.R104Q	1.000	240	0.4%	120	20.8%	154	37.6%	possibly_damaging(0.489)	deleterious(0.01)	deleterious(0.568)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARF3	377	genome.wustl.edu	37	12	49333804	49333804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001659.2	-1	reviewed	p.R79G	1.000	307	0%	176	13.6%	153	22.2%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
MLL2	8085	genome.wustl.edu	37	12	49416532	49416532	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003482.3	-1	validated	p.T5393	0.588	276	0%	221	24%	18	27.7%	-	-	-	HMMPfam_SET,superfamily_SET domain
MLL2	8085	genome.wustl.edu	37	12	49420432	49420432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003482.3	-1	validated	p.R5106H	1.000	51	0%	40	40%	23	47.8%	unknown(0)	-	-	HMMSmart_SM00184,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger
MLL2	8085	genome.wustl.edu	37	12	49430998	49430998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003482.3	-1	validated	p.P3381T	1.000	99	2%	89	12.4%	1	0%	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49447333	49447333	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003482.3	-1	validated	p.C255	0.996	105	0%	119	28.6%	2	0%	-	-	-	HMMSmart_SM00184,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
TUBA1B	10376	genome.wustl.edu	37	12	49523074	49523074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006082.2	-1	validated	p.T109I	1.000	547	0.2%	537	18.8%	958	41.9%	possibly_damaging(0.945)	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
LOC100289071	100289071	genome.wustl.edu	37	12	49525085	49525085	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343170.1	+1	model	p.*114	0.803	40	0%	57	24.6%	1253	42.2%	-	-	-	NULL
TUBA1A	7846	genome.wustl.edu	37	12	49579389	49579389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006009.2	-1	reviewed	p.E254K	1.000	655	0%	532	24.8%	270	4.4%	possibly_damaging(0.782)	deleterious(0)	deleterious(0.738)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
PRPH	5630	genome.wustl.edu	37	12	49690963	49690963	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006262.3	+1	reviewed	p.N301	1.000	83	0%	65	26.2%	0	-	-	-	-	HMMPfam_Filament
TROAP	10024	genome.wustl.edu	37	12	49723686	49723686	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005480.3	+1	validated	p.S404*	0.003	202	0%	228	21.9%	11	27.2%	-	-	-	NULL
TROAP	10024	genome.wustl.edu	37	12	49723930	49723930	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005480.3	+1	validated	p.R434	1.000	152	0%	148	25.7%	7	42.8%	-	-	-	NULL
FAM186B	84070	genome.wustl.edu	37	12	49992538	49992538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032130.2	-1	validated	p.K788N	1.000	91	0%	61	18%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
FAM186B	84070	genome.wustl.edu	37	12	49993719	49993719	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032130.2	-1	validated	p.D568	0.210	238	0%	162	13.6%	0	-	-	-	-	NULL
FMNL3	91010	genome.wustl.edu	37	12	50042044	50042044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175736.4	-1	validated	p.L870I	1.000	151	0%	120	27.5%	25	12%	benign(0.051)	deleterious(0.04)	neutral(0.352)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
FMNL3	91010	genome.wustl.edu	37	12	50047597	50047597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175736.4	-1	validated	p.V378M	1.000	575	0%	327	26.9%	10	10%	benign(0.307)	tolerated(0.15)	neutral(0.337)	HMMPfam_Drf_FH3
NCKAP5L	57701	genome.wustl.edu	37	12	50189268	50189268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037806.3	-1	validated	p.R792H	0.998	123	0%	137	13.1%	16	12.5%	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	NULL
NCKAP5L	57701	genome.wustl.edu	37	12	50189689	50189689	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037806.3	-1	validated	p.R652*	0.362	41	0%	48	18.8%	1	0%	-	-	-	NULL
RACGAP1	29127	genome.wustl.edu	37	12	50386048	50386048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001126103.1	-1	validated	p.D520Y	1.000	288	0%	119	22.7%	44	43.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RhoGAP,superfamily_Rho_GAP
RACGAP1	29127	genome.wustl.edu	37	12	50388282	50388282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001126103.1	-1	validated	p.A352V	1.000	211	0%	101	16.8%	33	33.3%	possibly_damaging(0.579)	deleterious(0.03)	deleterious(0.564)	NULL
RACGAP1	29127	genome.wustl.edu	37	12	50395035	50395035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001126103.1	-1	validated	p.R184C	1.000	137	0%	81	18.5%	16	37.5%	benign(0.233)	tolerated(0.07)	neutral(0.343)	NULL
ASIC1	41	genome.wustl.edu	37	12	50453675	50453675	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020039.2	+1	reviewed	p.R166*	1.000	95	0%	119	20.2%	1	0%	-	-	-	HMMPfam_ASC
LIMA1	51474	genome.wustl.edu	37	12	50570879	50570879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113546.1	-1	validated	p.R751W	1.000	996	0%	637	20.3%	47	40.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM186A	121006	genome.wustl.edu	37	12	50747244	50747244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145475.1	-1	provisional	p.T1124I	0.002	376	0.5%	212	16%	0	-	probably_damaging(0.994)	tolerated(0.17)	deleterious(0.511)	NULL
FAM186A	121006	genome.wustl.edu	37	12	50754643	50754643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145475.1	-1	provisional	p.E160G	0.200	454	0%	176	14.8%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
DIP2B	57609	genome.wustl.edu	37	12	51128860	51128860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173602.2	+1	validated	p.R1350S	1.000	370	0%	175	28.6%	6	50%	benign(0.024)	tolerated(0.58)	neutral(0.006)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
CSRNP2	81566	genome.wustl.edu	37	12	51467784	51467784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030809.1	-1	provisional	p.R78Q	1.000	139	0%	100	14%	4	25%	possibly_damaging(0.666)	deleterious(0)	deleterious(0.680)	NULL
BIN2	51411	genome.wustl.edu	37	12	51689604	51689604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016293.2	-1	validated	p.V246A	1.000	222	0%	148	11.5%	22	0%	possibly_damaging(0.533)	tolerated(0.39)	neutral(0.196)	NULL
SLC4A8	9498	genome.wustl.edu	37	12	51899625	51899625	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039960.1	+1	validated	p.D1060	1.000	399	0%	211	24.2%	0	-	-	-	-	NULL
GRASP	160622	genome.wustl.edu	37	12	52402975	52402975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181711.2	+1	provisional	p.G83D	1.000	150	0%	226	20.4%	4	0%	possibly_damaging(0.765)	tolerated(0.25)	neutral(0.321)	NULL
NR4A1	3164	genome.wustl.edu	37	12	52451313	52451313	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002135.3	+1	reviewed	p.T513	1.000	239	0%	285	25.6%	19	47.3%	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
KRT80	144501	genome.wustl.edu	37	12	52579309	52579309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182507.2	-1	reviewed	p.Q121H	1.000	79	0%	77	27.3%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Filament
ENSG00000135477	0	genome.wustl.edu	37	12	52652028	52652028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000257935	-1	known	p.A104T	0.716	315	0%	388	28.6%	0	-	-	-	-	NULL
KRT75	9119	genome.wustl.edu	37	12	52827705	52827705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004693.2	-1	reviewed	p.Q128H	1.000	406	0%	288	21.2%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
KRT6A	3853	genome.wustl.edu	37	12	52881705	52881705	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005554.3	-1	reviewed	p.G498	0.012	193	0.5%	144	12.5%	0	-	-	-	-	NULL
KRT73	319101	genome.wustl.edu	37	12	53012125	53012125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175068.2	-1	reviewed	p.A62S	0.008	56	0%	54	22.2%	0	-	possibly_damaging(0.838)	tolerated(0.16)	neutral(0.380)	NULL
KRT76	51350	genome.wustl.edu	37	12	53165722	53165722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015848.4	-1	reviewed	p.S399I	0.959	414	0%	237	12.7%	0	-	benign(0.113)	tolerated(0.12)	neutral(0.270)	superfamily_Prefoldin,HMMPfam_Filament
KRT79	338785	genome.wustl.edu	37	12	53227764	53227764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175834.2	-1	reviewed	p.A94V	0.003	69	0%	52	34.6%	1	100%	benign(0.312)	tolerated(0.22)	neutral(0.140)	NULL
KRT79	338785	genome.wustl.edu	37	12	53227788	53227788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175834.2	-1	reviewed	p.G86E	0.940	50	0%	35	40%	1	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
KRT78	196374	genome.wustl.edu	37	12	53241843	53241843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173352.2	-1	reviewed	p.Q149H	0.928	81	0%	54	18.5%	0	-	benign(0.104)	deleterious(0.03)	neutral(0.372)	HMMPfam_Filament
KRT8	3856	genome.wustl.edu	37	12	53291364	53291364	+	Missense_Mutation	SNP	C	C	T	rs58573614	byCluster;byFrequency;by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002273.3	-1	reviewed	p.G434S	0.943	39	0%	45	22.2%	1822	41.9%	benign(0.008)	tolerated(0.24)	neutral(0.037)	NULL
KRT8	3856	genome.wustl.edu	37	12	53292486	53292486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002273.3	-1	reviewed	p.K393N	1.000	151	0%	134	16.4%	2396	50.3%	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	HMMPfam_Filament,PatternScan_IF
LOC100129362	100129362	genome.wustl.edu	37	12	53342929	53342929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001725644.2	-1	model	p.T138I	0.002	28	0%	29	20.7%	99	46.4%	-	-	-	NULL
TENC1	23371	genome.wustl.edu	37	12	53454217	53454217	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015319.2	+1	reviewed	p.E892	0.998	50	0%	59	20.3%	11	9%	-	-	-	NULL
TENC1	23371	genome.wustl.edu	37	12	53456223	53456223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015319.2	+1	reviewed	p.R1254H	0.199	193	0%	146	23.3%	10	30%	benign(0.22)	deleterious(0.04)	neutral(0.370)	superfamily_SSF55550
IGFBP6	3489	genome.wustl.edu	37	12	53494638	53494638	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002178.2	+1	validated	p.E159	0.995	147	0%	166	24.1%	10	10%	-	-	-	superfamily_Thyroglobulin_1
SOAT2	8435	genome.wustl.edu	37	12	53498974	53498974	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003578.3	+1	reviewed	p.S74	0.000	148	0%	142	23.2%	1	0%	-	-	-	NULL
CSAD	51380	genome.wustl.edu	37	12	53564258	53564258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015989.4	-1	validated	p.A226V	1.000	188	0%	170	24.7%	5	60%	possibly_damaging(0.555)	tolerated(0.05)	deleterious(0.535)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
ZNF740	283337	genome.wustl.edu	37	12	53580194	53580194	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004304.3	+1	validated	p.C131	1.000	165	0%	156	25.6%	7	42.8%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ESPL1	9700	genome.wustl.edu	37	12	53663284	53663284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012291.4	+1	validated	p.E186D	0.280	124	0.8%	131	13%	4	50%	benign(0.04)	tolerated(0.2)	neutral(0.052)	NULL
ESPL1	9700	genome.wustl.edu	37	12	53666549	53666549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012291.4	+1	validated	p.L472I	1.000	306	0%	294	30.6%	1	0%	probably_damaging(0.98)	tolerated(0.06)	deleterious(0.746)	NULL
ESPL1	9700	genome.wustl.edu	37	12	53675314	53675314	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012291.4	+1	validated	p.S841	0.000	244	0%	200	26.5%	5	60%	-	-	-	NULL
AAAS	8086	genome.wustl.edu	37	12	53702751	53702751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015665.5	-1	reviewed	p.R330H	1.000	251	0%	237	25.7%	47	42.5%	probably_damaging(0.978)	tolerated(0.26)	neutral(0.455)	superfamily_WD40_like
AMHR2	269	genome.wustl.edu	37	12	53819538	53819538	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020547.2	+1	reviewed	p.I229	1.000	117	0%	85	16.5%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TARBP2	6895	genome.wustl.edu	37	12	53899475	53899475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134323.1	+1	reviewed	p.G262C	1.000	149	0%	125	24%	71	33.8%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
CALCOCO1	57658	genome.wustl.edu	37	12	54113567	54113567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020898.2	-1	validated	p.L269I	0.574	540	0%	277	11.6%	41	12.1%	probably_damaging(0.955)	tolerated(0.51)	neutral(0.408)	HMMPfam_CALCOCO1
HOXC10	3226	genome.wustl.edu	37	12	54383143	54383143	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017409.3	+1	reviewed	p.I314	1.000	224	0%	257	19.5%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
HOXC4	3221	genome.wustl.edu	37	12	54447915	54447915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014620.4	+1	reviewed	p.T70I	1.000	49	0%	53	35.8%	14	42.8%	benign(0.035)	tolerated(0.08)	neutral(0.302)	NULL
CBX5	23468	genome.wustl.edu	37	12	54645972	54645972	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127321.1	-1	reviewed	p.C59	0.990	326	0%	357	25.5%	30	40%	-	-	-	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
NFE2	4778	genome.wustl.edu	37	12	54686359	54686359	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136023.1	-1	provisional	p.R307	0.997	39	0%	22	27.3%	1	100%	-	-	-	HMMSmart_SM00338,HMMPfam_bZIP_1
NCKAP1L	3071	genome.wustl.edu	37	12	54891610	54891610	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005337.4	+1	reviewed	p.E13*	1.000	177	0%	131	19.8%	3	33.3%	-	-	-	HMMPfam_Nckap1
NEUROD4	58158	genome.wustl.edu	37	12	55420388	55420388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021191.2	+1	validated	p.E55D	0.216	122	0%	56	25%	0	-	possibly_damaging(0.942)	tolerated(0.39)	neutral(0.403)	NULL
OR9K2	441639	genome.wustl.edu	37	12	55523823	55523823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005243.1	+1	provisional	p.L91I	1.000	246	0%	112	14.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PHC1P1	653441	genome.wustl.edu	37	12	55805512	55805512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000326184	-1	known	p.E1003D	0.996	115	0%	142	21.1%	3	0%	-	-	-	HMMSmart_SM00454
PHC1P1	653441	genome.wustl.edu	37	12	55808221	55808221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000326184	-1	known	p.Q100H	0.973	214	0%	293	21.8%	4	0%	-	-	-	NULL
OR2AP1	121129	genome.wustl.edu	37	12	55968650	55968650	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000321688	+1	known	p.L151R	0.003	72	0%	33	33.3%	0	-	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	HMMPfam_7tm_1,superfamily_SSF81321
ITGA7	3679	genome.wustl.edu	37	12	56088735	56088735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144996.1	-1	reviewed	p.A679S	0.995	35	0%	38	18.4%	10	20%	benign(0.406)	tolerated(0.57)	neutral(0.137)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
GDF11	10220	genome.wustl.edu	37	12	56143508	56143508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005811.3	+1	reviewed	p.T356A	1.000	130	0%	139	12.9%	12	8.3%	benign(0.076)	tolerated(0.1)	neutral(0.292)	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501
DGKA	1606	genome.wustl.edu	37	12	56331270	56331270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001345.4	+1	reviewed	p.A73S	1.000	459	0%	452	20.1%	10	20%	benign(0.02)	tolerated(0.32)	neutral(0.025)	superfamily_EF-hand
DGKA	1606	genome.wustl.edu	37	12	56334110	56334110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001345.4	+1	reviewed	p.V271M	1.000	228	0%	172	27.3%	7	28.5%	unknown(0)	deleterious(0.05)	-	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
DGKA	1606	genome.wustl.edu	37	12	56335092	56335092	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001345.4	+1	reviewed	p.G386	0.271	441	0%	344	23.3%	12	0%	-	-	-	HMMPfam_DAGK_cat,HMMSmart_SM00046
PMEL	6490	genome.wustl.edu	37	12	56348105	56348105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006928.3	-1	validated	p.V627I	0.000	500	0.2%	270	20.7%	3	33.3%	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
RAB5B	5869	genome.wustl.edu	37	12	56385937	56385937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002868.2	+1	validated	p.R197W	1.000	199	0%	142	14.8%	74	21.6%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
SUOX	6821	genome.wustl.edu	37	12	56398366	56398366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000456.2	+1	reviewed	p.R398Q	1.000	274	0%	237	21.5%	33	30.3%	possibly_damaging(0.477)	tolerated(0.43)	neutral(0.171)	superfamily_Oxidored_molyb
ERBB3	2065	genome.wustl.edu	37	12	56495060	56495060	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001982.2	+1	reviewed	p.L1139	1.000	111	0%	80	23.7%	22	59%	-	-	-	NULL
ERBB3	2065	genome.wustl.edu	37	12	56495575	56495575	+	Silent	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001982.2	+1	reviewed	p.T1255	0.693	96	0%	93	22.6%	24	37.5%	-	-	-	NULL
ZC3H10	84872	genome.wustl.edu	37	12	56515023	56515023	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032786.1	+1	provisional	p.E226A	0.982	44	0%	57	22.8%	8	50%	benign(0.014)	tolerated(0.54)	neutral(0.008)	NULL
ESYT1	23344	genome.wustl.edu	37	12	56527423	56527423	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015292.2	+1	validated	p.L449	1.000	412	0%	243	18.1%	65	38.4%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ESYT1	23344	genome.wustl.edu	37	12	56530534	56530534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015292.2	+1	validated	p.D547Y	1.000	131	0%	104	27.9%	47	36.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RNF41	10193	genome.wustl.edu	37	12	56604162	56604162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005785.2	-1	reviewed	p.V94A	1.000	117	0%	76	23.7%	24	29.1%	benign(0.001)	deleterious(0.04)	neutral(0.349)	superfamily_TRAF domain-like
ANKRD52	283373	genome.wustl.edu	37	12	56646612	56646612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173595.3	-1	validated	p.T418I	1.000	225	0%	137	20.4%	5	60%	possibly_damaging(0.674)	deleterious(0.03)	deleterious(0.604)	superfamily_ANK
COQ10A	93058	genome.wustl.edu	37	12	56662858	56662858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144576.3	+1	validated	p.E99D	1.000	423	0%	409	21.5%	7	28.5%	benign(0.041)	tolerated(0.28)	neutral(0.034)	HMMPfam_Polyketide_cyc
CS	1431	genome.wustl.edu	37	12	56668876	56668876	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004077.2	-1	reviewed	p.H276Q	0.999	139	0%	110	10.9%	99	32.3%	possibly_damaging(0.78)	deleterious(0.02)	deleterious(0.674)	HMMPfam_Citrate_synt,superfamily_Citrate_synthase_core
PAN2	9924	genome.wustl.edu	37	12	56716446	56716446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127460.2	-1	reviewed	p.L868M	1.000	183	0%	111	15.3%	11	27.2%	possibly_damaging(0.748)	tolerated(0.09)	deleterious(0.571)	HMMPfam_UCH,superfamily_Cysteine proteinases
PAN2	9924	genome.wustl.edu	37	12	56716516	56716516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127460.2	-1	reviewed	p.E844D	1.000	146	0%	115	23.5%	8	87.5%	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_UCH,superfamily_Cysteine proteinases
TIMELESS	8914	genome.wustl.edu	37	12	56826248	56826248	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003920.3	-1	validated	p.L198	1.000	137	0%	62	9.7%	16	18.7%	-	-	-	HMMPfam_TIMELESS
MIP	4284	genome.wustl.edu	37	12	56847525	56847525	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012064.3	-1	reviewed	p.V125	1.000	49	0%	33	21.2%	1	0%	-	-	-	HMMPfam_MIP,superfamily_MIP
SPRYD4	283377	genome.wustl.edu	37	12	56863221	56863221	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207344.3	+1	validated	p.L162	1.000	182	0%	208	24%	16	25%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
GLS2	27165	genome.wustl.edu	37	12	56866494	56866494	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013267.2	-1	reviewed	p.G497	0.987	304	0%	274	22.6%	2	50%	-	-	-	superfamily_Ankyrin repeat
BAZ2A	11176	genome.wustl.edu	37	12	56993578	56993578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013449.3	-1	validated	p.G1696R	1.000	238	0.4%	172	18.6%	20	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD
ATP5B	506	genome.wustl.edu	37	12	57032911	57032911	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001686.3	-1	reviewed	p.G490*	1.000	273	0%	316	15.5%	1555	27.1%	-	-	-	HMMPfam_ATP-synt_ab_C,superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase
NACA	4666	genome.wustl.edu	37	12	57113053	57113053	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113203.1	-1	validated	p.I754S	0.047	142	0%	123	13.8%	1	0%	unknown(0)	-	-	NULL
NACA	4666	genome.wustl.edu	37	12	57113583	57113583	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113203.1	-1	validated	p.S577	0.001	293	0%	190	21.6%	0	-	-	-	-	NULL
ZBTB39	9880	genome.wustl.edu	37	12	57397141	57397141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014830.1	-1	provisional	p.H521Y	1.000	78	0%	102	27.5%	0	-	possibly_damaging(0.485)	tolerated(0.76)	neutral(0.162)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TMEM194A	23306	genome.wustl.edu	37	12	57454668	57454668	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130963.1	-1	validated	p.Y347*	1.000	323	0%	102	23.5%	6	33.3%	-	-	-	HMMPfam_DUF2215
TMEM194A	23306	genome.wustl.edu	37	12	57466571	57466571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130963.1	-1	validated	p.Q84H	1.000	290	0%	188	19.1%	3	0%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
NAB2	4665	genome.wustl.edu	37	12	57485367	57485367	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005967.3	+1	reviewed	p.D181	0.963	44	0%	46	23.9%	15	60%	-	-	-	NULL
STAT6	6778	genome.wustl.edu	37	12	57490386	57490386	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003153.4	-1	reviewed	p.H838P	1.000	99	0%	84	22.6%	53	37.7%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
STAT6	6778	genome.wustl.edu	37	12	57498306	57498306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003153.4	-1	reviewed	p.A385T	0.995	158	0%	130	26.2%	44	61.3%	probably_damaging(1)	tolerated(0.68)	deleterious(0.502)	superfamily_p53-like transcription factors,HMMPfam_STAT_bind
LRP1	4035	genome.wustl.edu	37	12	57570837	57570837	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002332.2	+1	reviewed	p.F1335	0.449	215	0%	152	19.1%	0	-	-	-	-	HMMPfam_Ldl_recept_b,superfamily_YWTD domain
LRP1	4035	genome.wustl.edu	37	12	57578175	57578175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002332.2	+1	reviewed	p.E2042D	0.821	132	0%	139	10.8%	2	0%	possibly_damaging(0.49)	tolerated(0.57)	neutral(0.169)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
LRP1	4035	genome.wustl.edu	37	12	57579565	57579565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002332.2	+1	reviewed	p.L2239M	0.986	99	0%	115	20.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_YWTD domain
LRP1	4035	genome.wustl.edu	37	12	57585121	57585121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002332.2	+1	reviewed	p.P2419S	1.000	52	0%	43	14%	2	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
LRP1	4035	genome.wustl.edu	37	12	57590936	57590936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002332.2	+1	reviewed	p.K3022E	1.000	83	0%	78	23.1%	5	0%	benign(0.277)	tolerated(0.09)	neutral(0.326)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin
LRP1	4035	genome.wustl.edu	37	12	57597018	57597018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002332.2	+1	reviewed	p.A3589V	1.000	42	0%	53	32.1%	13	7.6%	benign(0.311)	tolerated(0.1)	neutral(0.383)	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMSmart_SM00181
LRP1	4035	genome.wustl.edu	37	12	57604635	57604635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002332.2	+1	reviewed	p.G4297S	0.996	33	0%	30	36.7%	32	0%	benign(0.013)	tolerated(0.25)	neutral(0.037)	HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
SHMT2	6472	genome.wustl.edu	37	12	57627877	57627877	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005412.5	+1	reviewed	p.E457	0.921	195	0%	197	18.8%	174	31%	-	-	-	superfamily_PyrdxlP-dep_Trfase_major
R3HDM2	22864	genome.wustl.edu	37	12	57648612	57648612	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014925.3	-1	validated	p.R959*	1.000	255	0%	130	23.8%	27	33.3%	-	-	-	NULL
INHBC	3626	genome.wustl.edu	37	12	57843760	57843760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005538.2	+1	reviewed	p.K338N	1.000	75	0%	59	18.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
ARHGAP9	64333	genome.wustl.edu	37	12	57873078	57873078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032496.2	-1	reviewed	p.A38T	0.984	151	0%	155	25.2%	9	0%	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
MARS	4141	genome.wustl.edu	37	12	57894213	57894213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004990.2	+1	reviewed	p.V401M	1.000	281	0%	300	27%	37	67.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1g,superfamily_SSF52374,superfamily_SSF57770
MARS	4141	genome.wustl.edu	37	12	57906130	57906130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004990.2	+1	reviewed	p.A583T	1.000	276	0.4%	241	22%	63	9.5%	possibly_damaging(0.521)	tolerated(0.1)	neutral(0.462)	HMMPfam_tRNA-synt_1g,superfamily_SSF52374
MARS	4141	genome.wustl.edu	37	12	57908841	57908841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004990.2	+1	reviewed	p.R735K	1.000	267	0%	206	22.8%	72	16.6%	benign(0)	tolerated(1)	-	superfamily_tRNAsyn_1a_bind
MBD6	114785	genome.wustl.edu	37	12	57922743	57922743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052897.3	+1	validated	p.S963I	1.000	209	0%	262	15.3%	51	15.6%	possibly_damaging(0.916)	-	-	NULL
KIF5A	3798	genome.wustl.edu	37	12	57962813	57962813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004984.2	+1	reviewed	p.A261D	1.000	193	0.5%	102	20.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARHGEF25	115557	genome.wustl.edu	37	12	58006769	58006769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001111270.1	+1	validated	p.L91M	0.983	69	0%	106	25.5%	5	0%	possibly_damaging(0.947)	tolerated(0.22)	neutral(0.432)	NULL
SLC26A10	65012	genome.wustl.edu	37	12	58016658	58016658	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133489.2	+1	validated	p.S294T	1.000	391	0%	420	16.9%	1	0%	probably_damaging(0.991)	tolerated(0.82)	neutral(0.445)	HMMPfam_Sulfate_transp
SLC26A10	65012	genome.wustl.edu	37	12	58018741	58018741	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133489.2	+1	validated	p.H440	0.386	579	0%	533	23.3%	0	-	-	-	-	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa
MARCH9	92979	genome.wustl.edu	37	12	58152016	58152016	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138396.4	+1	validated	p.W213*	1.000	383	0%	457	19.7%	67	41.7%	-	-	-	NULL
CYP27B1	1594	genome.wustl.edu	37	12	58160709	58160709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000785.3	-1	reviewed	p.D39G	1.000	110	0%	123	26.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
TSFM	10102	genome.wustl.edu	37	12	58190114	58190114	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005726.5	+1	reviewed	p.T242	0.011	137	0%	84	23.8%	103	41.7%	-	-	-	HMMPfam_EF_TS,superfamily_Elongation factor Ts (EF-Ts) dimerisation domain
AVIL	10677	genome.wustl.edu	37	12	58191708	58191708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006576.3	-1	reviewed	p.G806D	0.793	510	0%	278	20.5%	3	33.3%	benign(0.119)	tolerated(0.38)	neutral(0.027)	HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain
AVIL	10677	genome.wustl.edu	37	12	58200280	58200280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006576.3	-1	reviewed	p.V512L	0.018	411	0%	171	11.7%	2	0%	benign(0.146)	deleterious(0.05)	neutral(0.358)	HMMSmart_SM00262,superfamily_Actin depolymerizing proteins
XRCC6BP1	91419	genome.wustl.edu	37	12	58350635	58350635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033276.2	+1	provisional	p.D235N	1.000	321	0%	182	17.6%	32	50%	benign(0.188)	deleterious(0.01)	neutral(0.423)	NULL
LRIG3	121227	genome.wustl.edu	37	12	59282633	59282633	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153377.3	-1	provisional	p.G257	0.993	542	0%	201	20.9%	5	80%	-	-	-	HMMSmart_SM00369,superfamily_RNI-like
USP15	9958	genome.wustl.edu	37	12	62688081	62688081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006313.1	+1	provisional	p.L71I	1.000	258	0%	94	19.1%	13	30.7%	benign(0.003)	tolerated(0.37)	neutral(0.019)	HMMSmart_DUSP
MON2	23041	genome.wustl.edu	37	12	62918368	62918368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015026.2	+1	validated	p.A353V	1.000	165	0%	51	15.7%	2	50%	benign(0.073)	deleterious(0.02)	neutral(0.388)	NULL
MON2	23041	genome.wustl.edu	37	12	62974119	62974119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015026.2	+1	validated	p.F1540V	1.000	371	0%	301	18.3%	9	22.2%	benign(0.001)	tolerated(0.54)	neutral(0.007)	superfamily_ARM-type_fold
ENSG00000250314	0	genome.wustl.edu	37	12	63398237	63398237	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000514535	-1	known	NULL	1.000	124	0%	140	20.7%	0	-	-	-	-	-
DPY19L2	283417	genome.wustl.edu	37	12	63954418	63954418	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173812.4	-1	validated	p.I717	0.998	168	0%	62	25.8%	1	100%	-	-	-	HMMPfam_DUF2211
DPY19L2	283417	genome.wustl.edu	37	12	63974505	63974505	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173812.4	-1	validated	p.G613*	1.000	335	0%	169	11.2%	0	-	-	-	-	HMMPfam_DUF2211
DPY19L2	283417	genome.wustl.edu	37	12	64011138	64011138	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173812.4	-1	validated	p.F388	1.000	251	0%	70	14.3%	1	0%	-	-	-	HMMPfam_DUF2211
C12orf66	144577	genome.wustl.edu	37	12	64588118	64588118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152440.4	-1	validated	p.T281M	1.000	237	0%	244	26.2%	3	33.3%	benign(0.034)	tolerated(0.09)	neutral(0.298)	HMMPfam_DUF2003
C12orf56	115749	genome.wustl.edu	37	12	64746822	64746822	+	Silent	SNP	C	C	T	rs140681878	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099676.2	-1	validated	p.P89	1.000	269	0%	71	26.8%	0	-	-	-	-	NULL
XPOT	11260	genome.wustl.edu	37	12	64810528	64810528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007235.3	+1	reviewed	p.K65R	1.000	596	0%	534	23%	14	42.8%	benign(0.382)	tolerated(0.46)	neutral(0.134)	superfamily_ARM-type_fold
XPOT	11260	genome.wustl.edu	37	12	64812733	64812733	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007235.3	+1	reviewed	p.E116	0.939	367	1.1%	242	18.6%	7	42.8%	-	-	-	HMMPfam_Xpo1,superfamily_ARM-type_fold
XPOT	11260	genome.wustl.edu	37	12	64819683	64819683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007235.3	+1	reviewed	p.S554F	1.000	289	0%	162	24.1%	23	47.8%	possibly_damaging(0.791)	tolerated(0.44)	neutral(0.309)	superfamily_ARM-type_fold
XPOT	11260	genome.wustl.edu	37	12	64825572	64825572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007235.3	+1	reviewed	p.P744H	1.000	177	0.6%	69	21.7%	58	34.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM-type_fold
TBK1	29110	genome.wustl.edu	37	12	64860795	64860795	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013254.2	+1	reviewed	p.F158C	1.000	573	0%	210	19.5%	12	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
WIF1	11197	genome.wustl.edu	37	12	65445210	65445210	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007191.4	-1	reviewed	p.G353	1.000	118	0%	59	25.4%	1	0%	-	-	-	NULL
WIF1	11197	genome.wustl.edu	37	12	65461522	65461522	+	Missense_Mutation	SNP	C	C	T	rs144593509	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007191.4	-1	reviewed	p.R196H	0.880	175	0%	46	15.2%	0	-	probably_damaging(0.978)	tolerated(0.66)	neutral(0.423)	HMMSmart_EGF,HMMPfam_EGF_2
IRAK3	11213	genome.wustl.edu	37	12	66605231	66605231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007199.2	+1	reviewed	p.L148M	0.001	271	0%	307	21.8%	0	-	probably_damaging(0.961)	deleterious(0.04)	deleterious(0.753)	NULL
IRAK3	11213	genome.wustl.edu	37	12	66611014	66611014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007199.2	+1	reviewed	p.L218M	0.161	849	0%	1084	21.4%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IRAK3	11213	genome.wustl.edu	37	12	66641872	66641872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007199.2	+1	reviewed	p.S571F	0.009	138	0%	112	18.8%	3	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
HELB	92797	genome.wustl.edu	37	12	66704299	66704299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033647.2	+1	reviewed	p.A531T	0.004	148	0%	63	19%	1	0%	benign(0.244)	tolerated(0.53)	neutral(0.032)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DYRK2	8445	genome.wustl.edu	37	12	68051933	68051933	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006482.2	+1	reviewed	p.L416	1.000	171	0%	139	25.9%	45	28.8%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IFNG	3458	genome.wustl.edu	37	12	68551973	68551973	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000619.2	-1	reviewed	p.E61*	0.827	442	0%	224	12.9%	9	0%	-	-	-	HMMPfam_IFN-gamma,superfamily_4-helical cytokines
CPM	1368	genome.wustl.edu	37	12	69250339	69250339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005502.2	-1	reviewed	p.P404T	0.000	377	0%	184	25%	30	43.3%	benign(0)	tolerated(0.46)	neutral(0.012)	HMMSmart_Zn_pept,superfamily_CarboxypepD_reg
LRRC10	376132	genome.wustl.edu	37	12	70004478	70004478	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201550.2	-1	provisional	p.H47	0.082	69	0%	53	11.3%	0	-	-	-	-	superfamily_SSF52058
BEST3	144453	genome.wustl.edu	37	12	70048767	70048767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032735.2	-1	validated	p.L643M	0.031	322	0.3%	84	16.7%	0	-	benign(0.075)	tolerated(0.19)	neutral(0.054)	NULL
CNOT2	4848	genome.wustl.edu	37	12	70723291	70723291	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014515.4	+1	provisional	p.H109	1.000	272	0%	92	21.7%	42	40.4%	-	-	-	NULL
PTPRR	5801	genome.wustl.edu	37	12	71054756	71054756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002849.2	-1	reviewed	p.A577D	0.997	286	0%	78	26.9%	1	0%	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRR	5801	genome.wustl.edu	37	12	71094954	71094954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002849.2	-1	reviewed	p.V386D	0.997	246	0%	60	10%	0	-	benign(0.051)	deleterious(0.03)	neutral(0.367)	superfamily_(Phosphotyrosine protein) phosphatases II
LGR5	8549	genome.wustl.edu	37	12	71966648	71966648	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003667.2	+1	provisional	p.E385D	0.998	288	0%	98	15.3%	23	34.7%	benign(0.086)	deleterious(0.03)	neutral(0.371)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
TMEM19	55266	genome.wustl.edu	37	12	72094663	72094663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018279.3	+1	validated	p.R300M	0.856	436	0.2%	212	20.3%	16	31.2%	benign(0.407)	deleterious(0.02)	deleterious(0.514)	HMMPfam_DUF92
TRHDE	29953	genome.wustl.edu	37	12	73012689	73012689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013381.2	+1	reviewed	p.Q735H	1.000	62	0%	40	20%	0	-	possibly_damaging(0.91)	deleterious(0.02)	deleterious(0.746)	NULL
TRHDE	29953	genome.wustl.edu	37	12	73046895	73046895	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013381.2	+1	reviewed	p.A936	1.000	219	0%	87	31%	0	-	-	-	-	NULL
TRHDE	29953	genome.wustl.edu	37	12	73050756	73050756	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013381.2	+1	reviewed	p.E967*	1.000	232	0.4%	85	16.5%	0	-	-	-	-	NULL
ATXN7L3B	552889	genome.wustl.edu	37	12	74931973	74931973	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136262.1	+1	validated	p.E27	1.000	409	0%	386	21.5%	28	50%	-	-	-	NULL
BBS10	79738	genome.wustl.edu	37	12	76740010	76740010	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024685.3	-1	reviewed	p.T585	0.008	221	0%	195	15.4%	13	38.4%	-	-	-	superfamily_GroEL-ATPase
OSBPL8	114882	genome.wustl.edu	37	12	76765301	76765301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020841.4	-1	reviewed	p.P661S	0.973	584	0%	224	18.8%	3	0%	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_Oxysterol_BP
E2F7	144455	genome.wustl.edu	37	12	77419505	77419505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203394.2	-1	validated	p.A800S	0.000	300	0%	183	21.3%	0	-	benign(0.023)	tolerated(0.89)	neutral(0.001)	NULL
E2F7	144455	genome.wustl.edu	37	12	77438493	77438493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203394.2	-1	validated	p.K304N	1.000	456	0%	250	22.8%	0	-	benign(0.096)	tolerated(0.44)	neutral(0.019)	"HMMPfam_E2F_TDP,superfamily_""Winged helix"" DNA-binding domain"
NAV3	89795	genome.wustl.edu	37	12	78415632	78415632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014903.4	+1	validated	p.E671D	1.000	212	0%	40	32.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NAV3	89795	genome.wustl.edu	37	12	78513519	78513519	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014903.4	+1	validated	p.P1181	0.375	207	0%	126	23%	0	-	-	-	-	NULL
NAV3	89795	genome.wustl.edu	37	12	78573333	78573333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014903.4	+1	validated	p.E1774D	1.000	136	0%	21	19%	0	-	probably_damaging(0.987)	tolerated(0.54)	neutral(0.444)	NULL
NAV3	89795	genome.wustl.edu	37	12	78574692	78574692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014903.4	+1	validated	p.K1831N	1.000	213	0%	34	17.6%	0	-	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	NULL
LOC338756	338756	genome.wustl.edu	37	12	79952790	79952790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001714544.1	+1	model	p.E114K	0.005	24	0%	28	28.6%	1	0%	-	-	-	NULL
OTOGL	283310	genome.wustl.edu	37	12	80651695	80651695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343203.1	+1	model	p.R542I	1.000	652	0%	426	25.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80655789	80655789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343203.1	+1	model	p.A585T	1.000	297	0%	161	28%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
OTOGL	283310	genome.wustl.edu	37	12	80696480	80696480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343203.1	+1	model	p.V949I	0.999	126	0%	152	13.8%	0	-	benign(0.012)	tolerated(1)	neutral(0.001)	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80722872	80722872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343203.1	+1	model	p.A1346S	0.749	421	0%	195	11.3%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
OTOGL	283310	genome.wustl.edu	37	12	80730249	80730249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343203.1	+1	model	p.A1458S	1.000	321	0%	110	9.1%	0	-	possibly_damaging(0.892)	tolerated(0.58)	neutral(0.356)	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80771733	80771733	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343203.1	+1	model	p.R2220*	1.000	275	0%	89	21.3%	1	100%	-	-	-	HMMSmart_SM00041
PTPRQ	374462	genome.wustl.edu	37	12	80890086	80890086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000266688	+1	known	p.R683M	0.046	125	0%	41	29.3%	0	-	benign(0.066)	tolerated(0.06)	neutral(0.327)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRQ	374462	genome.wustl.edu	37	12	80928802	80928802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000266688	+1	known	p.G991C	0.994	266	0%	185	17.8%	0	-	possibly_damaging(0.888)	deleterious(0.04)	deleterious(0.696)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRQ	374462	genome.wustl.edu	37	12	80982018	80982018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000266688	+1	known	p.T1466A	0.999	318	0%	115	10.4%	0	-	probably_damaging(0.974)	tolerated(0.63)	neutral(0.419)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRQ	374462	genome.wustl.edu	37	12	80982102	80982102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000266688	+1	known	p.A1494T	0.726	209	0%	83	19.3%	0	-	benign(0.344)	tolerated(0.81)	neutral(0.109)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MYF6	4618	genome.wustl.edu	37	12	81101800	81101800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002469.2	+1	reviewed	p.R101H	1.000	50	0%	74	28.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
MYF5	4617	genome.wustl.edu	37	12	81110890	81110890	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005593.2	+1	validated	p.Y16	1.000	33	0%	52	17.3%	0	-	-	-	-	HMMPfam_Basic,HMMSmart_BASIC
ACSS3	79611	genome.wustl.edu	37	12	81528604	81528604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024560.2	+1	validated	p.L156M	1.000	233	0%	125	24.8%	1	0%	probably_damaging(0.957)	tolerated(0.06)	deleterious(0.723)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSS3	79611	genome.wustl.edu	37	12	81536891	81536891	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024560.2	+1	validated	p.A262	0.000	299	0%	205	29.3%	0	-	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
PPFIA2	8499	genome.wustl.edu	37	12	81675140	81675140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003625.2	-1	reviewed	p.Q1036H	0.933	194	0%	96	9.4%	0	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
PPFIA2	8499	genome.wustl.edu	37	12	81839378	81839378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003625.2	-1	reviewed	p.A176V	1.000	417	0%	360	23.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMTC2	160335	genome.wustl.edu	37	12	83359509	83359509	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152588.1	+1	provisional	p.Q619*	1.000	133	0%	127	27.6%	6	33.3%	-	-	-	HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like
SLC6A15	55117	genome.wustl.edu	37	12	85255607	85255607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182767.4	-1	validated	p.P666H	0.797	322	0.3%	66	21.2%	0	-	benign(0.198)	deleterious(0.02)	neutral(0.402)	NULL
SLC6A15	55117	genome.wustl.edu	37	12	85255676	85255676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182767.4	-1	validated	p.N643S	1.000	316	0%	65	24.6%	0	-	possibly_damaging(0.437)	tolerated(0.15)	neutral(0.383)	HMMPfam_SNF
LRRIQ1	84125	genome.wustl.edu	37	12	85492269	85492269	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001079910.1	+1	validated	p.G1008	0.974	308	0%	79	11.4%	0	-	-	-	-	superfamily_RNI-like
NTS	4922	genome.wustl.edu	37	12	86272175	86272175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006183.3	+1	reviewed	p.S63I	0.908	214	0%	156	19.2%	1	0%	unknown(0)	deleterious(0.05)	-	HMMPfam_Pro-NT_NN
CEP290	80184	genome.wustl.edu	37	12	88471474	88471474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025114.3	-1	reviewed	p.Q1862H	1.000	133	0%	63	12.7%	3	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
CEP290	80184	genome.wustl.edu	37	12	88508207	88508207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025114.3	-1	reviewed	p.R681I	1.000	436	0%	431	22%	0	-	possibly_damaging(0.491)	deleterious(0.01)	deleterious(0.569)	NULL
TMTC3	160418	genome.wustl.edu	37	12	88560183	88560183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181783.3	+1	reviewed	p.W292R	1.000	487	0%	199	22.6%	3	33.3%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_DUF1736
POC1B	282809	genome.wustl.edu	37	12	89815023	89815023	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172240.1	-1	provisional	p.I448	0.460	179	0%	72	18.1%	22	31.8%	-	-	-	NULL
C12orf12	196477	genome.wustl.edu	37	12	91347329	91347329	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152638.2	-1	predicted	p.S397	0.000	396	0%	650	12.2%	0	-	-	-	-	NULL
KERA	11081	genome.wustl.edu	37	12	91449939	91449939	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007035.3	-1	reviewed	p.F40	0.364	215	0.5%	69	20.3%	0	-	-	-	-	superfamily_SSF52058
LUM	4060	genome.wustl.edu	37	12	91502032	91502032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002345.3	-1	reviewed	p.A242V	0.986	389	0%	126	11.9%	187	0%	benign(0.002)	tolerated(0.2)	neutral(0.049)	HMMPfam_LRR_1,superfamily_L domain-like
LUM	4060	genome.wustl.edu	37	12	91502635	91502635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002345.3	-1	reviewed	p.C41Y	1.000	407	0%	114	22.8%	127	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like
DCN	1634	genome.wustl.edu	37	12	91552191	91552191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001920.3	-1	reviewed	p.Q140H	0.003	343	0%	211	19%	93	0%	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
EEA1	8411	genome.wustl.edu	37	12	93169824	93169824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003566.3	-1	validated	p.R1400H	1.000	249	0%	60	16.7%	11	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FYVE,HMMSmart_FYVE,superfamily_FYVE_PHD_ZnF
EEA1	8411	genome.wustl.edu	37	12	93171759	93171759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003566.3	-1	validated	p.T1284M	1.000	467	0%	131	20.6%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
EEA1	8411	genome.wustl.edu	37	12	93210003	93210003	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003566.3	-1	validated	p.K634	1.000	382	0%	136	14%	1	0%	unknown(0)	-	-	NULL
CRADD	8738	genome.wustl.edu	37	12	94072588	94072588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003805.3	+1	reviewed	p.R13H	1.000	72	0%	63	14.3%	5	60%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain
PLXNC1	10154	genome.wustl.edu	37	12	94613892	94613892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005761.1	+1	provisional	p.P552L	0.000	206	0%	93	21.5%	1	0%	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
PLXNC1	10154	genome.wustl.edu	37	12	94637758	94637758	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005761.1	+1	provisional	p.I782S	1.000	679	0%	180	18.3%	1	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_TIG,HMMSmart_IPT
TMCC3	57458	genome.wustl.edu	37	12	94976070	94976070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020698.2	-1	validated	p.A108V	0.993	393	0%	153	20.9%	9	22.2%	benign(0.084)	tolerated(0.55)	neutral(0.013)	HMMPfam_Tmemb_cc2
NR2C1	7181	genome.wustl.edu	37	12	95442955	95442955	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003297.2	-1	reviewed	p.Q340H	1.000	329	0%	104	17.3%	12	50%	probably_damaging(0.992)	tolerated(0.11)	deleterious(0.719)	superfamily_Nuclear receptor ligand-binding domain
VEZT	55591	genome.wustl.edu	37	12	95676153	95676153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017599.3	+1	validated	p.S354Y	1.000	296	0%	154	14.9%	15	13.3%	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
NTN4	59277	genome.wustl.edu	37	12	96104400	96104400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021229.3	-1	validated	p.K333N	1.000	203	0%	96	24%	17	52.9%	possibly_damaging(0.946)	tolerated(0.51)	neutral(0.399)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin
NTN4	59277	genome.wustl.edu	37	12	96180838	96180838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021229.3	-1	validated	p.K155T	1.000	216	0%	269	13.4%	16	18.7%	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_Laminin_N,HMMSmart_SM00136
HAL	3034	genome.wustl.edu	37	12	96374582	96374582	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002108.2	-1	reviewed	p.P449	1.000	393	0%	269	24.9%	0	-	-	-	-	HMMPfam_PAL,superfamily_L-Aspartase-like
CDK17	5128	genome.wustl.edu	37	12	96707195	96707195	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002595.3	-1	reviewed	p.G107	1.000	236	0%	188	23.9%	6	66.6%	-	-	-	NULL
NEDD1	121441	genome.wustl.edu	37	12	97339612	97339612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135175.1	+1	validated	p.T606M	0.998	244	0%	79	17.7%	20	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000206899	0	genome.wustl.edu	37	12	98115500	98115500	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000384172	+1	known	NULL	0.430	193	0%	197	22.8%	0	-	-	-	-	-
ENSG00000227825	0	genome.wustl.edu	37	12	98849817	98849817	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000370696	-1	known	p.A27	1.000	272	0%	253	10.7%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
TMPO	7112	genome.wustl.edu	37	12	98938114	98938114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001032283.2	+1	reviewed	p.T257I	1.000	253	0%	152	19.1%	22	45.4%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SLC25A3	5250	genome.wustl.edu	37	12	98991780	98991780	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005888.3	+1	reviewed	p.V143	0.982	409	0%	434	22.1%	347	42.3%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
IKBIP	121457	genome.wustl.edu	37	12	99007657	99007657	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201612.1	-1	provisional	p.F253	0.818	369	0.5%	178	19.7%	20	30%	-	-	-	NULL
IKBIP	121457	genome.wustl.edu	37	12	99007694	99007694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201612.1	-1	provisional	p.S241Y	0.002	364	0%	186	26.3%	20	30%	possibly_damaging(0.658)	tolerated(0.07)	deleterious(0.551)	NULL
ANKS1B	56899	genome.wustl.edu	37	12	99638168	99638168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152788.3	-1	validated	p.D791Y	1.000	630	0%	246	23.2%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
FAM71C	196472	genome.wustl.edu	37	12	100042139	100042139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153364.1	+1	predicted	p.H63Y	0.134	152	0%	74	27%	0	-	probably_damaging(0.999)	tolerated(0.29)	deleterious(0.519)	NULL
FAM71C	196472	genome.wustl.edu	37	12	100042419	100042419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153364.1	+1	predicted	p.S156L	0.006	73	0%	66	21.2%	0	-	benign(0.002)	tolerated(0.34)	neutral(0.023)	NULL
UHRF1BP1L	23074	genome.wustl.edu	37	12	100476844	100476844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015054.1	-1	validated	p.L453I	0.996	464	0%	215	16.7%	5	0%	possibly_damaging(0.882)	tolerated(0.34)	neutral(0.367)	NULL
ENSG00000238105	0	genome.wustl.edu	37	12	100552571	100552571	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000429462	-1	known	p.T124	0.000	122	0%	66	25.8%	1	0%	-	-	-	NULL
GOLGA2P5	55592	genome.wustl.edu	37	12	100559912	100559912	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_024261.1	-1	validated	NULL	0.003	78	0%	39	23.1%	0	-	-	-	-	-
SCYL2	55681	genome.wustl.edu	37	12	100727971	100727971	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017988.4	+1	provisional	p.E597*	1.000	337	0%	224	20.1%	6	16.6%	-	-	-	superfamily_ARM repeat
SCYL2	55681	genome.wustl.edu	37	12	100732875	100732875	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017988.4	+1	provisional	p.Q905	1.000	200	0%	152	15.8%	16	12.5%	-	-	-	NULL
NR1H4	9971	genome.wustl.edu	37	12	100934522	100934522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005123.2	+1	provisional	p.R331H	1.000	653	0.2%	353	22.4%	0	-	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
ANO4	121601	genome.wustl.edu	37	12	101336234	101336234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178826.3	+1	validated	p.R91I	1.000	245	0%	76	14.5%	0	-	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	NULL
ANO4	121601	genome.wustl.edu	37	12	101436111	101436111	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178826.3	+1	validated	e10-1	1.000	404	0%	131	24.4%	0	-	-	-	-	-
ANO4	121601	genome.wustl.edu	37	12	101505394	101505394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178826.3	+1	validated	p.A751T	1.000	361	0%	92	14.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_DUF590
SLC5A8	160728	genome.wustl.edu	37	12	101576679	101576679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145913.3	-1	validated	p.S356N	1.000	284	0%	96	19.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_SSF
SLC5A8	160728	genome.wustl.edu	37	12	101576689	101576689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145913.3	-1	validated	p.V353M	1.000	259	0%	85	15.3%	0	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMPfam_SSF
SLC5A8	160728	genome.wustl.edu	37	12	101581219	101581219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145913.3	-1	validated	p.S303F	1.000	207	0%	57	22.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
UTP20	27340	genome.wustl.edu	37	12	101731941	101731941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014503.2	+1	validated	p.V1252I	1.000	299	0%	136	25.7%	1	0%	benign(0.022)	tolerated(0.71)	neutral(0.003)	superfamily_ARM repeat
UTP20	27340	genome.wustl.edu	37	12	101766694	101766694	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014503.2	+1	validated	p.L2277	0.996	499	0%	311	19%	5	20%	-	-	-	superfamily_ARM repeat
ARL1	400	genome.wustl.edu	37	12	101789449	101789449	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001177.3	-1	reviewed	e6-1	1.000	470	0.2%	210	24.8%	15	100%	-	-	-	-
ARL1	400	genome.wustl.edu	37	12	101794854	101794854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001177.3	-1	reviewed	p.V108I	1.000	486	0%	263	24.7%	81	16%	benign(0)	tolerated(0.4)	neutral(0.016)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPIC	121599	genome.wustl.edu	37	12	101880156	101880156	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152323.1	+1	provisional	p.H118	0.991	254	0.4%	123	19.5%	0	-	-	-	-	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785
GNPTAB	79158	genome.wustl.edu	37	12	102158799	102158799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024312.4	-1	reviewed	p.E632D	0.984	747	0%	327	21.1%	4	25%	benign(0.106)	tolerated(0.29)	neutral(0.037)	NULL
GNPTAB	79158	genome.wustl.edu	37	12	102158940	102158940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024312.4	-1	reviewed	p.I585M	0.936	551	0%	281	11.7%	8	12.5%	possibly_damaging(0.918)	tolerated(0.06)	deleterious(0.691)	NULL
DRAM1	55332	genome.wustl.edu	37	12	102315026	102315026	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018370.2	+1	reviewed	p.N235	0.530	414	0%	138	18.8%	29	27.5%	-	-	-	NULL
IGF1	3479	genome.wustl.edu	37	12	102811776	102811776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001111285.1	-1	reviewed	p.Q136H	0.995	595	0%	351	24.5%	3	0%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
C12orf42	374470	genome.wustl.edu	37	12	103696195	103696195	+	Silent	SNP	G	G	A	rs189742644	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099336.1	-1	validated	p.P258	0.001	43	0%	45	35.6%	1	0%	-	-	-	NULL
STAB2	55576	genome.wustl.edu	37	12	104122635	104122635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017564.9	+1	reviewed	p.D1648E	0.226	182	0%	55	21.8%	0	-	benign(0.051)	tolerated(0.39)	neutral(0.019)	HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1
NT5DC3	51559	genome.wustl.edu	37	12	104174084	104174084	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000447799	-1	known	p.R37*	1.000	612	0%	396	19.4%	2	50%	possibly_damaging(0.939)	deleterious(0.02)	deleterious(0.768)	HMMPfam_5_nucleotid
HSP90B1	7184	genome.wustl.edu	37	12	104335270	104335270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003299.1	+1	provisional	p.S392Y	0.996	375	0%	236	20.3%	518	40.5%	benign(0.181)	deleterious(0)	neutral(0.461)	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90
TDG	6996	genome.wustl.edu	37	12	104376646	104376646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003211.4	+1	reviewed	p.G183E	0.024	226	0%	80	17.5%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UDG,superfamily_UDNA_glycsylseSF
TDG	6996	genome.wustl.edu	37	12	104380758	104380758	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003211.4	+1	reviewed	p.F375V	0.000	647	0.2%	241	7.9%	15	40%	benign(0)	tolerated(1)	-	NULL
HCFC2	29915	genome.wustl.edu	37	12	104461804	104461804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013320.2	+1	reviewed	p.S131I	1.000	486	0%	626	21.1%	1	100%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2
CHST11	50515	genome.wustl.edu	37	12	105151281	105151281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018413.5	+1	validated	p.E253D	1.000	199	0%	149	20.1%	23	0%	benign(0.313)	tolerated(0.35)	neutral(0.118)	HMMPfam_Sulfotransfer_2
SLC41A2	84102	genome.wustl.edu	37	12	105321817	105321817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032148.3	-1	validated	p.I163M	0.881	447	0%	280	16.8%	6	50%	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	NULL
ENSG00000179821	0	genome.wustl.edu	37	12	105371346	105371346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000312876	-1	known	p.I148T	0.997	54	0%	60	20%	0	-	-	-	-	HMMPfam_Filament
KIAA1033	23325	genome.wustl.edu	37	12	105515918	105515918	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015275.1	+1	validated	p.N230H	1.000	160	0%	139	22.3%	2	50%	benign(0.208)	tolerated(0.17)	neutral(0.079)	NULL
NUAK1	9891	genome.wustl.edu	37	12	106466581	106466581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014840.2	-1	validated	p.K207R	1.000	172	0%	94	28.7%	4	0%	benign(0.005)	tolerated(0.5)	neutral(0.010)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CKAP4	10970	genome.wustl.edu	37	12	106632820	106632820	+	Missense_Mutation	SNP	C	C	A	rs148031456	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006825.3	-1	validated	p.K597N	1.000	189	0.5%	187	27.3%	177	45.7%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
CKAP4	10970	genome.wustl.edu	37	12	106634058	106634058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006825.3	-1	validated	p.L185I	0.139	76	0%	138	21.7%	106	42.4%	benign(0.024)	tolerated(0.24)	neutral(0.038)	NULL
TCP11L2	255394	genome.wustl.edu	37	12	106734603	106734603	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152772.1	+1	provisional	e8-1	1.000	287	0%	106	23.6%	1	100%	-	-	-	-
TCP11L2	255394	genome.wustl.edu	37	12	106734658	106734658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152772.1	+1	provisional	p.E399D	0.964	411	0%	147	18.4%	7	71.4%	probably_damaging(0.993)	tolerated(0.12)	deleterious(0.711)	HMMPfam_Tcp11
RFX4	5992	genome.wustl.edu	37	12	107105268	107105268	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213594.1	+1	reviewed	p.T324	1.000	417	0%	197	24.4%	0	-	-	-	-	NULL
RIC8B	55188	genome.wustl.edu	37	12	107208791	107208791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018157.2	+1	validated	p.K150N	1.000	229	0%	91	18.7%	3	66.6%	possibly_damaging(0.513)	tolerated(0.49)	neutral(0.183)	superfamily_ARM-type_fold,HMMPfam_Ric8
MTERFD3	80298	genome.wustl.edu	37	12	107372394	107372394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033050.1	-1	validated	p.F33L	0.001	388	0%	294	17.3%	6	50%	unknown(0)	deleterious(0)	-	NULL
CRY1	1407	genome.wustl.edu	37	12	107393423	107393423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004075.3	-1	validated	p.R348H	1.000	166	0.6%	92	20.7%	10	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_FAD_binding_7,superfamily_Cryptochrome/photolyase FAD-binding domain
BTBD11	121551	genome.wustl.edu	37	12	108029083	108029083	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018072.1	+1	validated	p.L885	1.000	212	0%	66	33.3%	0	-	-	-	-	NULL
PRDM4	11108	genome.wustl.edu	37	12	108128097	108128097	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012406.3	-1	reviewed	p.E766*	1.000	781	0%	254	20.9%	17	52.9%	-	-	-	NULL
PRDM4	11108	genome.wustl.edu	37	12	108145247	108145247	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012406.3	-1	reviewed	p.L357	1.000	185	0%	102	19.6%	9	33.3%	-	-	-	NULL
SART3	9733	genome.wustl.edu	37	12	108926028	108926028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014706.3	-1	reviewed	p.E547K	0.999	105	1%	55	16.4%	34	35.2%	benign(0.099)	tolerated(0.44)	neutral(0.020)	superfamily_TPR-like
SSH1	54434	genome.wustl.edu	37	12	109181869	109181869	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018984.3	-1	validated	p.L1015	0.000	244	0%	225	22.2%	7	42.8%	-	-	-	NULL
SSH1	54434	genome.wustl.edu	37	12	109192889	109192889	+	Silent	SNP	G	G	A	rs184372660	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018984.3	-1	validated	p.F412	0.653	167	0%	119	23.5%	1	0%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
SSH1	54434	genome.wustl.edu	37	12	109210915	109210915	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018984.3	-1	validated	p.A100	1.000	142	0%	96	19.8%	1	0%	-	-	-	NULL
USP30	84749	genome.wustl.edu	37	12	109523641	109523641	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032663.3	+1	validated	p.Q487*	1.000	137	0%	79	27.8%	28	46.4%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
ACACB	32	genome.wustl.edu	37	12	109617866	109617866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001093.3	+1	reviewed	p.V598I	1.000	116	0%	58	29.3%	1	0%	probably_damaging(0.973)	tolerated(0.17)	deleterious(0.474)	HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like
ACACB	32	genome.wustl.edu	37	12	109625910	109625910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001093.3	+1	reviewed	p.A696V	1.000	225	0%	153	20.9%	3	0%	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	HMMPfam_Biotin_carb_C,superfamily_Rudiment single hybrid motif
ACACB	32	genome.wustl.edu	37	12	109674979	109674979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001093.3	+1	reviewed	p.D1486N	1.000	96	0%	56	28.6%	1	0%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	HMMPfam_ACC_central
ACACB	32	genome.wustl.edu	37	12	109703292	109703292	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001093.3	+1	reviewed	p.T2404	1.000	38	0%	29	17.2%	4	0%	-	-	-	NULL
FOXN4	121643	genome.wustl.edu	37	12	109719221	109719221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213596.2	-1	validated	p.A429T	1.000	87	0%	88	21.6%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
FOXN4	121643	genome.wustl.edu	37	12	109728091	109728091	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213596.2	-1	validated	p.R29	1.000	24	0%	35	25.7%	0	-	-	-	-	NULL
MYO1H	283446	genome.wustl.edu	37	12	109872871	109872871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001101421.3	+1	provisional	p.T692N	1.000	532	0%	271	20.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
KCTD10	83892	genome.wustl.edu	37	12	109894034	109894034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031954.3	-1	provisional	p.K204N	1.000	334	0%	243	25.1%	10	30%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UBE3B	89910	genome.wustl.edu	37	12	109936039	109936039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130466.2	+1	reviewed	p.R274H	1.000	383	0%	154	11.7%	8	12.5%	possibly_damaging(0.782)	deleterious(0.04)	deleterious(0.642)	NULL
GIT2	9815	genome.wustl.edu	37	12	110397694	110397694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_057169.3	-1	reviewed	p.A353T	1.000	200	0%	89	23.6%	23	21.7%	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	HMMPfam_GIT_SHD,HMMSmart_SM00555
GIT2	9815	genome.wustl.edu	37	12	110405301	110405301	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_057169.3	-1	reviewed	p.K242N	1.000	506	0%	181	16.6%	18	33.3%	possibly_damaging(0.803)	tolerated(0.13)	deleterious(0.555)	superfamily_Ankyrin repeat
ANKRD13A	88455	genome.wustl.edu	37	12	110475266	110475266	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033121.1	+1	validated	p.L560	0.991	85	0%	54	31.5%	22	31.8%	-	-	-	HMMSmart_SM00726
C12orf76	400073	genome.wustl.edu	37	12	110480172	110480172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207435.1	-1	predicted	p.R131I	0.000	155	0%	87	17.2%	9	33.3%	unknown(0)	-	-	NULL
CCDC63	160762	genome.wustl.edu	37	12	111317865	111317865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152591.1	+1	provisional	p.E215D	1.000	199	0%	96	22.9%	0	-	probably_damaging(0.996)	tolerated(0.19)	deleterious(0.511)	NULL
CUX2	23316	genome.wustl.edu	37	12	111731341	111731341	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015267.3	+1	validated	p.T176	1.000	283	0%	234	16.7%	0	-	-	-	-	NULL
SH2B3	10019	genome.wustl.edu	37	12	111884556	111884556	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005475.2	+1	reviewed	e2-1	1.000	128	0%	103	24.3%	1	100%	-	-	-	-
ACAD10	80724	genome.wustl.edu	37	12	112174699	112174699	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136538.1	+1	reviewed	p.Y566*	1.000	300	0%	173	24.9%	5	40%	-	-	-	superfamily_Protein kinase-like (PK-like)
ACAD10	80724	genome.wustl.edu	37	12	112182591	112182591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136538.1	+1	reviewed	p.T651M	0.003	120	0%	86	16.3%	7	14.2%	possibly_damaging(0.859)	tolerated(0.13)	deleterious(0.585)	NULL
ACAD10	80724	genome.wustl.edu	37	12	112182771	112182771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136538.1	+1	reviewed	p.P711H	0.997	58	0%	46	19.6%	8	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like
MAPKAPK5	8550	genome.wustl.edu	37	12	112305415	112305415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139078.1	+1	reviewed	p.V76F	1.000	403	0%	143	21%	14	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TMEM116	89894	genome.wustl.edu	37	12	112374574	112374574	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138341.1	-1	provisional	p.T78	0.559	380	0%	135	14.1%	15	13.3%	-	-	-	NULL
ERP29	10961	genome.wustl.edu	37	12	112460347	112460347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006817.3	+1	reviewed	p.R226M	1.000	97	0%	63	14.3%	370	35.6%	benign(0.003)	deleterious(0.03)	neutral(0.364)	HMMPfam_ERp29,superfamily_ERP29_C
NAA25	80018	genome.wustl.edu	37	12	112513497	112513497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024953.3	-1	reviewed	p.R254H	1.000	315	0%	160	22.5%	3	33.3%	possibly_damaging(0.861)	tolerated(0.09)	deleterious(0.629)	superfamily_TPR-like
TRAFD1	10906	genome.wustl.edu	37	12	112589756	112589756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143906.1	+1	validated	p.Q477H	0.698	202	0%	114	24.6%	68	27.9%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
C12orf51	283450	genome.wustl.edu	37	12	112607326	112607326	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001109662.2	-1	validated	p.G3641	0.975	34	0%	35	14.3%	5	0%	-	-	-	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
C12orf51	283450	genome.wustl.edu	37	12	112673321	112673321	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001109662.2	-1	validated	p.D1482E	0.998	89	0%	28	17.9%	2	50%	possibly_damaging(0.806)	-	-	NULL
C12orf51	283450	genome.wustl.edu	37	12	112673466	112673466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001109662.2	-1	validated	p.A1434V	1.000	136	0%	38	21.1%	0	-	probably_damaging(0.98)	-	-	NULL
RPH3A	22895	genome.wustl.edu	37	12	113332452	113332452	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143854.1	+1	validated	p.P615	1.000	258	0%	61	24.6%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
OAS3	4940	genome.wustl.edu	37	12	113384576	113384576	+	Missense_Mutation	SNP	C	C	T	rs192393759	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006187.2	+1	reviewed	p.T222M	0.029	79	0%	69	24.6%	20	20%	benign(0.015)	tolerated(0.1)	neutral(0.287)	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain
OAS2	4939	genome.wustl.edu	37	12	113425160	113425160	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001032731.1	+1	reviewed	p.C165	0.000	98	0%	51	31.4%	6	16.6%	-	-	-	NULL
RASAL1	8437	genome.wustl.edu	37	12	113542046	113542046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004658.1	-1	reviewed	p.A629T	1.000	16	0%	29	20.7%	10	30%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
RASAL1	8437	genome.wustl.edu	37	12	113553445	113553445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004658.1	-1	reviewed	p.R333Q	0.997	77	1.3%	78	32.1%	12	50%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
DDX54	79039	genome.wustl.edu	37	12	113612469	113612469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001111322.1	-1	reviewed	p.K348N	1.000	54	0%	42	23.8%	106	49%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_P-loop containing nucleoside triphosphate hydrolases
IQCD	115811	genome.wustl.edu	37	12	113645693	113645693	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138451.1	-1	provisional	p.E93	0.916	435	0%	318	20.1%	4	50%	-	-	-	NULL
TPCN1	53373	genome.wustl.edu	37	12	113731136	113731136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143819.1	+1	validated	p.M844I	1.000	142	0%	105	21%	22	18.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SLC24A6	80024	genome.wustl.edu	37	12	113748143	113748143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024959.2	-1	validated	p.G385C	0.742	82	0%	51	39.2%	29	34.4%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	NULL
PLBD2	196463	genome.wustl.edu	37	12	113810530	113810530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173542.3	+1	validated	p.R154K	0.980	139	0%	104	19.2%	19	52.6%	benign(0.001)	tolerated(0.64)	neutral(0.003)	HMMPfam_Phospholip_B
SDS	10993	genome.wustl.edu	37	12	113836340	113836340	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006843.2	-1	reviewed	p.P135	0.997	73	0%	71	26.8%	7	0%	-	-	-	HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu
SDSL	113675	genome.wustl.edu	37	12	113875852	113875852	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138432.2	+1	provisional	p.Q320*	0.276	106	0%	65	27.7%	83	32.5%	-	-	-	superfamily_PyrdxlP-dep_enz_bsu
RBM19	9904	genome.wustl.edu	37	12	114358446	114358446	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016196.3	-1	reviewed	p.E785	1.000	219	0%	152	23.7%	31	32.2%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
MED13L	23389	genome.wustl.edu	37	12	116429283	116429283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015335.3	-1	validated	p.R1159H	1.000	165	0%	63	19%	1	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
MED13L	23389	genome.wustl.edu	37	12	116446786	116446786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015335.3	-1	validated	p.K478E	1.000	959	0%	337	19.9%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
MED13L	23389	genome.wustl.edu	37	12	116457130	116457130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015335.3	-1	validated	p.G303V	1.000	203	0%	51	17.6%	2	50%	probably_damaging(0.986)	tolerated(0.38)	neutral(0.452)	NULL
C12orf49	79794	genome.wustl.edu	37	12	117155699	117155699	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024738.1	-1	predicted	e5-1	1.000	127	0%	80	16.3%	0	-	-	-	-	-
C12orf49	79794	genome.wustl.edu	37	12	117158153	117158153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024738.1	-1	predicted	p.G123V	1.000	75	0%	50	24%	11	27.2%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_DUF2054
FBXW8	26259	genome.wustl.edu	37	12	117365931	117365931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153348.2	+1	reviewed	p.Q141R	1.000	346	0%	167	25.1%	7	28.5%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_F-box,HMMSmart_SM00256,superfamily_F-box domain
NOS1	4842	genome.wustl.edu	37	12	117680508	117680508	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000620.2	-1	reviewed	p.L989	0.999	280	0%	111	9.9%	2	100%	-	-	-	superfamily_Riboflavin synthase domain-like
VSIG10	54621	genome.wustl.edu	37	12	118533534	118533534	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019086.5	-1	validated	p.T55	1.000	156	0.6%	121	21.5%	8	12.5%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SRRM4	84530	genome.wustl.edu	37	12	119554806	119554806	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194286.2	+1	validated	p.R144*	0.998	253	0%	117	24.8%	0	-	-	-	-	NULL
CIT	11113	genome.wustl.edu	37	12	120138591	120138591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007174.1	-1	validated	p.R1819H	1.000	173	0%	102	27.5%	13	61.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_CNH,HMMSmart_SM00036
GCN1L1	10985	genome.wustl.edu	37	12	120572101	120572101	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006836.1	-1	validated	p.H2437	0.098	146	0%	143	25.2%	67	46.2%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
GCN1L1	10985	genome.wustl.edu	37	12	120587477	120587477	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006836.1	-1	validated	p.H1493	0.941	60	0%	50	14%	14	64.2%	-	-	-	superfamily_ARM repeat
GCN1L1	10985	genome.wustl.edu	37	12	120596420	120596420	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006836.1	-1	validated	e25-1	1.000	80	0%	45	17.8%	1	100%	-	-	-	-
GCN1L1	10985	genome.wustl.edu	37	12	120613556	120613556	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006836.1	-1	validated	p.I345	1.000	98	0%	73	13.7%	10	60%	-	-	-	superfamily_ARM repeat
PXN	5829	genome.wustl.edu	37	12	120659517	120659517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080855.1	-1	validated	p.R247H	0.940	99	0%	118	28.8%	30	53.3%	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_Paxillin
PXN	5829	genome.wustl.edu	37	12	120660436	120660436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080855.1	-1	validated	p.R204Q	1.000	88	0%	76	22.4%	26	53.8%	possibly_damaging(0.657)	tolerated(0.19)	neutral(0.281)	HMMPfam_Paxillin
SIRT4	23409	genome.wustl.edu	37	12	120741376	120741376	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012240.1	+1	reviewed	p.S4	0.119	82	0%	64	15.6%	2	0%	-	-	-	NULL
MSI1	4440	genome.wustl.edu	37	12	120783433	120783433	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002442.2	-1	reviewed	p.G350	0.950	202	0%	254	24%	0	-	-	-	-	NULL
MSI1	4440	genome.wustl.edu	37	12	120800929	120800929	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002442.2	-1	reviewed	p.R107*	1.000	295	0%	305	17.7%	0	-	-	-	-	NULL
COX6A1	1337	genome.wustl.edu	37	12	120875966	120875966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004373.2	+1	reviewed	p.L13M	0.450	70	0%	57	21.1%	922	43.8%	probably_damaging(0.977)	deleterious(0.03)	deleterious(0.783)	NULL
RNF10	9921	genome.wustl.edu	37	12	120995245	120995245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014868.4	+1	reviewed	p.S269Y	1.000	448	0%	164	23.2%	116	42.2%	probably_damaging(0.989)	tolerated(0.11)	deleterious(0.711)	superfamily_RING/U-box
RNF10	9921	genome.wustl.edu	37	12	121001211	121001211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014868.4	+1	reviewed	p.T439I	0.027	275	0%	113	23%	126	28.5%	benign(0.001)	tolerated(0.17)	neutral(0.059)	NULL
RNF10	9921	genome.wustl.edu	37	12	121013664	121013664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014868.4	+1	reviewed	p.P757H	1.000	214	0%	130	28.5%	251	34.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UNC119B	84747	genome.wustl.edu	37	12	121157829	121157829	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080533.1	+1	provisional	p.G250	1.000	271	0%	230	22.2%	6	16.6%	-	-	-	NULL
ACADS	35	genome.wustl.edu	37	12	121176213	121176213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000017.2	+1	reviewed	p.S252I	1.000	75	0%	72	23.6%	75	38.6%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	superfamily_AcylCoA_dehyd_NM
P2RX7	5027	genome.wustl.edu	37	12	121598722	121598722	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002562.4	+1	reviewed	p.T127	0.009	468	0%	165	10.9%	1	0%	-	-	-	HMMPfam_P2X_receptor
RNF34	80196	genome.wustl.edu	37	12	121855494	121855494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194271.1	+1	reviewed	p.R139H	0.999	344	0.3%	143	26.6%	23	47.8%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
KDM2B	84678	genome.wustl.edu	37	12	121880351	121880351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032590.4	-1	reviewed	p.L965M	1.000	63	0%	80	31.2%	11	27.2%	probably_damaging(0.996)	tolerated(0.24)	deleterious(0.499)	NULL
TMEM120B	144404	genome.wustl.edu	37	12	122188305	122188305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080825.2	+1	validated	p.L109I	1.000	434	0%	365	10.7%	8	37.5%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_TMPIT
TMEM120B	144404	genome.wustl.edu	37	12	122190074	122190074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080825.2	+1	validated	p.L136M	1.000	267	0%	241	22.8%	13	38.4%	benign(0.014)	tolerated(0.16)	neutral(0.060)	HMMPfam_TMPIT
SETD1B	23067	genome.wustl.edu	37	12	122255115	122255115	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015048.1	+1	validated	p.V964	0.996	43	0%	59	22%	14	50%	-	-	-	NULL
SETD1B	23067	genome.wustl.edu	37	12	122261654	122261654	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015048.1	+1	validated	p.P1680	1.000	50	2%	65	26.2%	11	54.5%	-	-	-	NULL
SETD1B	23067	genome.wustl.edu	37	12	122265969	122265969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015048.1	+1	validated	p.S1864N	1.000	129	0%	102	19.6%	34	38.2%	unknown(0)	-	-	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
HPD	3242	genome.wustl.edu	37	12	122277716	122277716	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002150.2	-1	reviewed	p.L367R	0.999	125	0%	142	13.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
PSMD9	5715	genome.wustl.edu	37	12	122340962	122340962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002813.4	+1	reviewed	p.Q168H	0.049	370	0%	203	25.6%	149	35.5%	benign(0.009)	tolerated(0.14)	neutral(0.250)	HMMSmart_SM00228,superfamily_PDZ domain-like
WDR66	144406	genome.wustl.edu	37	12	122380855	122380855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144668.4	+1	validated	p.E389K	0.001	181	0%	87	25.3%	3	33.3%	benign(0.119)	tolerated(0.71)	neutral(0.011)	superfamily_WD40 repeat-like
WDR66	144406	genome.wustl.edu	37	12	122392135	122392135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144668.4	+1	validated	p.R477H	0.009	238	0.4%	104	25%	3	66.6%	possibly_damaging(0.92)	tolerated(0.37)	neutral(0.390)	superfamily_WD40 repeat-like
MLXIP	22877	genome.wustl.edu	37	12	122615476	122615476	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000319080	+1	known	p.F332	1.000	241	0%	197	19.8%	9	33.3%	-	-	-	NULL
MLXIP	22877	genome.wustl.edu	37	12	122623378	122623378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000319080	+1	known	p.L801I	1.000	88	0%	129	20.9%	9	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IL31	386653	genome.wustl.edu	37	12	122657060	122657060	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014336.1	-1	validated	p.E132*	0.000	578	0%	342	21.1%	0	-	-	-	-	NULL
LRRC43	254050	genome.wustl.edu	37	12	122687873	122687873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098519.1	+1	validated	p.A619T	0.000	81	0%	120	23.3%	0	-	benign(0.039)	tolerated(0.47)	neutral(0.013)	NULL
DIABLO	56616	genome.wustl.edu	37	12	122693123	122693123	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019887.4	-1	reviewed	p.G175	0.998	108	0%	133	21.8%	118	38.9%	-	-	-	superfamily_Smac/diablo,HMMPfam_Smac_DIABLO
VPS33A	65082	genome.wustl.edu	37	12	122717464	122717464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022916.4	-1	validated	p.R498W	1.000	68	0%	76	25%	24	20.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec1,superfamily_Sec1-like
KNTC1	9735	genome.wustl.edu	37	12	123028173	123028173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014708.4	+1	reviewed	p.A184S	0.986	277	0%	123	26.8%	0	-	unknown(0)	tolerated(0.47)	-	NULL
KNTC1	9735	genome.wustl.edu	37	12	123070282	123070282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014708.4	+1	reviewed	p.V1212M	0.500	587	0%	595	25.7%	4	50%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
HCAR2	338442	genome.wustl.edu	37	12	123187090	123187090	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177551.3	-1	validated	p.S247	0.570	283	0%	199	14.1%	2	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ABCB9	23457	genome.wustl.edu	37	12	123425415	123425415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019625.3	-1	reviewed	p.R503Q	0.913	23	4.3%	26	26.9%	5	20%	benign(0.02)	tolerated(0.57)	neutral(0.007)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC100288239	100288239	genome.wustl.edu	37	12	123435021	123435021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343220.1	+1	model	p.D272N	0.923	64	0%	70	15.7%	2	50%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
ARL6IP4	51329	genome.wustl.edu	37	12	123466509	123466509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018694.2	+1	validated	p.T282A	1.000	111	0%	127	27.6%	651	42.8%	probably_damaging(0.987)	tolerated(0.08)	deleterious(0.736)	HMMPfam_SR-25
ARL6IP4	51329	genome.wustl.edu	37	12	123467037	123467037	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018694.2	+1	validated	p.E326	1.000	248	0%	318	11.3%	723	24.4%	-	-	-	HMMPfam_SR-25
PITPNM2	57605	genome.wustl.edu	37	12	123471283	123471283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020845.2	-1	validated	p.N1169K	1.000	30	0%	36	22.2%	6	33.3%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_LNS2,HMMSmart_SM00775,superfamily_HAD-like
PITPNM2	57605	genome.wustl.edu	37	12	123475134	123475134	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020845.2	-1	validated	p.S843A	1.000	30	0%	53	18.9%	2	50%	possibly_damaging(0.944)	deleterious(0.02)	deleterious(0.772)	HMMPfam_DDHD
PITPNM2	57605	genome.wustl.edu	37	12	123519112	123519112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020845.2	-1	validated	p.P9H	1.000	139	0%	96	25%	1	0%	possibly_damaging(0.609)	deleterious(0.02)	deleterious(0.594)	HMMPfam_IP_trans,superfamily_Bet v1-like
MPHOSPH9	10198	genome.wustl.edu	37	12	123648503	123648503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022782.2	-1	validated	p.T816A	0.560	303	0%	186	12.9%	11	54.5%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
MPHOSPH9	10198	genome.wustl.edu	37	12	123648595	123648595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022782.2	-1	validated	p.S785F	0.991	371	0%	242	24.4%	9	22.2%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
SBNO1	55206	genome.wustl.edu	37	12	123798257	123798257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018183.3	-1	validated	p.N1043D	1.000	221	0%	89	18%	2	100%	possibly_damaging(0.95)	tolerated(0.35)	neutral(0.414)	NULL
SBNO1	55206	genome.wustl.edu	37	12	123812288	123812288	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018183.3	-1	validated	p.E501*	1.000	179	0%	90	20%	3	33.3%	-	-	-	NULL
RILPL1	353116	genome.wustl.edu	37	12	124008151	124008151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178314.3	-1	validated	p.Q117H	1.000	79	0%	68	22.1%	14	14.2%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_Jnk-SapK_ap_N
TCTN2	79867	genome.wustl.edu	37	12	124163817	124163817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024809.3	+1	validated	p.V182A	0.888	580	0%	407	21.9%	14	42.8%	benign(0.01)	deleterious(0.03)	neutral(0.365)	HMMPfam_DUF1619
ATP6V0A2	23545	genome.wustl.edu	37	12	124212355	124212355	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012463.3	+1	reviewed	p.G183*	1.000	387	0%	175	25.1%	5	20%	-	-	-	HMMPfam_V_ATPase_I
DNAH10	196385	genome.wustl.edu	37	12	124270319	124270319	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207437.3	+1	validated	p.H358	0.002	102	0%	105	14.3%	0	-	-	-	-	HMMPfam_DHC_N1
DNAH10	196385	genome.wustl.edu	37	12	124341776	124341776	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207437.3	+1	validated	p.Y2086	0.193	172	0%	157	20.4%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH10	196385	genome.wustl.edu	37	12	124356032	124356032	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207437.3	+1	validated	p.T2438	0.943	256	0%	137	21.2%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH10	196385	genome.wustl.edu	37	12	124371815	124371815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207437.3	+1	validated	p.A2866T	1.000	151	0%	117	27.4%	0	-	possibly_damaging(0.943)	tolerated(0.16)	neutral(0.447)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124395180	124395180	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207437.3	+1	validated	p.Y3247*	1.000	316	0%	211	27%	0	-	-	-	-	NULL
DNAH10	196385	genome.wustl.edu	37	12	124403256	124403256	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207437.3	+1	validated	p.A3638S	0.993	144	0%	99	23.2%	0	-	benign(0.034)	tolerated(0.5)	neutral(0.012)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124416551	124416551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207437.3	+1	validated	p.G4280R	1.000	152	0.7%	178	26.4%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
CCDC92	80212	genome.wustl.edu	37	12	124421901	124421901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025140.1	-1	provisional	p.R234W	1.000	95	0%	131	25.2%	27	44.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
NCOR2	9612	genome.wustl.edu	37	12	124820029	124820029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006312.3	-1	validated	p.G2096C	1.000	57	0%	76	19.7%	32	18.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NCOR2	9612	genome.wustl.edu	37	12	124862871	124862871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006312.3	-1	validated	p.E693D	1.000	235	0%	198	25.3%	18	50%	unknown(0)	tolerated(0.18)	-	NULL
SCARB1	949	genome.wustl.edu	37	12	125284743	125284743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005505.4	-1	validated	p.P352L	1.000	261	0%	214	17.3%	25	16%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_CD36
SCARB1	949	genome.wustl.edu	37	12	125302153	125302153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005505.4	-1	validated	p.S76I	0.000	116	0%	76	25%	19	57.8%	benign(0.324)	tolerated(0.1)	neutral(0.388)	HMMPfam_CD36
DHX37	57647	genome.wustl.edu	37	12	125441308	125441308	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032656.2	-1	reviewed	p.H794	0.772	39	0%	52	26.9%	41	43.9%	-	-	-	HMMPfam_HA2,superfamily_SSF52540
TMEM132B	114795	genome.wustl.edu	37	12	126138595	126138595	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052907.2	+1	provisional	p.K859T	0.968	155	0%	71	32.4%	0	-	possibly_damaging(0.804)	tolerated(0.75)	neutral(0.304)	NULL
TMEM132C	92293	genome.wustl.edu	37	12	128899622	128899622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136103.2	+1	provisional	p.R32Q	0.816	75	0%	68	25%	0	-	possibly_damaging(0.474)	tolerated(0.64)	neutral(0.160)	NULL
TMEM132C	92293	genome.wustl.edu	37	12	128900025	128900025	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136103.2	+1	provisional	p.Q166	0.985	62	0%	37	24.3%	1	0%	-	-	-	NULL
SLC15A4	121260	genome.wustl.edu	37	12	129278683	129278683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000376744	-1	known	p.A596V	0.001	131	0%	76	15.8%	29	41.3%	-	-	-	NULL
TMEM132D	121256	genome.wustl.edu	37	12	129558635	129558635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133448.2	-1	validated	p.D1029Y	0.060	331	0%	222	14.9%	0	-	possibly_damaging(0.947)	deleterious(0.02)	deleterious(0.774)	NULL
TMEM132D	121256	genome.wustl.edu	37	12	130185066	130185066	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133448.2	-1	validated	p.K86T	0.972	167	0%	136	22.8%	0	-	probably_damaging(0.971)	tolerated(0.07)	deleterious(0.732)	NULL
FZD10	11211	genome.wustl.edu	37	12	130649097	130649097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007197.2	+1	reviewed	p.R537H	0.963	40	0%	80	27.5%	6	0%	possibly_damaging(0.884)	deleterious(0)	deleterious(0.789)	HMMPfam_Frizzled
RIMBP2	23504	genome.wustl.edu	37	12	130926790	130926790	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015347.4	-1	validated	p.A352	0.773	339	0%	291	19.9%	3	100%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
GPR133	283383	genome.wustl.edu	37	12	131476926	131476926	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198827.3	+1	validated	p.N319H	0.231	238	0%	261	10.7%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
ULK1	8408	genome.wustl.edu	37	12	132380201	132380201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003565.2	+1	validated	p.S56Y	0.999	128	0%	120	24.2%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PUS1	80324	genome.wustl.edu	37	12	132426431	132426431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025215.5	+1	reviewed	p.T380I	0.999	38	0%	38	18.4%	47	14.8%	benign(0.429)	tolerated(0.12)	neutral(0.400)	NULL
EP400	57634	genome.wustl.edu	37	12	132479440	132479440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015409.3	+1	validated	p.E921D	1.000	457	0%	234	13.2%	3	33.3%	unknown(0)	-	-	superfamily_SSF52540
EP400	57634	genome.wustl.edu	37	12	132514701	132514701	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015409.3	+1	validated	p.Q1917*	1.000	383	0%	349	17.5%	6	0%	-	-	-	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
EP400	57634	genome.wustl.edu	37	12	132516589	132516589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015409.3	+1	validated	p.A1948V	1.000	268	0%	252	21%	8	12.5%	unknown(0)	-	-	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
DDX51	317781	genome.wustl.edu	37	12	132625048	132625048	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175066.3	-1	validated	p.D531	0.000	101	0%	135	24.4%	22	4.5%	-	-	-	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
GALNT9	50614	genome.wustl.edu	37	12	132681657	132681657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000328957	-1	known	p.H603Y	0.994	111	0.9%	99	10.1%	0	-	possibly_damaging(0.65)	deleterious(0)	deleterious(0.672)	NULL
GALNT9	50614	genome.wustl.edu	37	12	132683804	132683804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000328957	-1	known	p.S471I	1.000	47	2.1%	55	25.5%	0	-	possibly_damaging(0.782)	tolerated(0.13)	deleterious(0.545)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
FBRSL1	57666	genome.wustl.edu	37	12	133148873	133148873	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142641.1	+1	validated	e10-1	1.000	135	0%	84	28.6%	4	75%	-	-	-	-
FBRSL1	57666	genome.wustl.edu	37	12	133153435	133153435	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142641.1	+1	validated	p.L627	1.000	29	0%	60	15%	41	51.2%	-	-	-	NULL
FBRSL1	57666	genome.wustl.edu	37	12	133158844	133158844	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142641.1	+1	validated	p.E774	0.527	37	0%	48	16.7%	20	25%	-	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133202900	133202900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006231.2	-1	validated	p.L2112M	1.000	41	0%	63	25.4%	43	58.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
POLE	5426	genome.wustl.edu	37	12	133249237	133249237	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006231.2	-1	validated	p.S554	0.992	218	0%	183	21.3%	13	15.3%	-	-	-	HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_SSF56672
POLE	5426	genome.wustl.edu	37	12	133253151	133253151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006231.2	-1	validated	p.S297F	1.000	197	0%	178	21.3%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold
POLE	5426	genome.wustl.edu	37	12	133257825	133257825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006231.2	-1	validated	p.L35M	1.000	180	0%	236	26.7%	1	100%	benign(0.201)	tolerated(0.15)	neutral(0.260)	NULL
POLE	5426	genome.wustl.edu	37	12	133257855	133257855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006231.2	-1	validated	p.A25T	0.995	156	0%	222	24.3%	0	-	benign(0)	tolerated(1)	-	NULL
CHFR	55743	genome.wustl.edu	37	12	133446260	133446260	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000266880	-1	known	p.A188	0.997	183	0%	126	19.8%	6	0%	-	-	-	NULL
ZNF605	100289635	genome.wustl.edu	37	12	133502497	133502497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000360187	-1	known	p.S463N	0.864	209	0%	130	8.5%	0	-	possibly_damaging(0.661)	tolerated(0.7)	neutral(0.236)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF10	7556	genome.wustl.edu	37	12	133732721	133732721	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015394.4	+1	reviewed	p.E297*	0.095	261	0%	81	30.9%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF268	10795	genome.wustl.edu	37	12	133779495	133779495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003415.2	+1	validated	p.R408K	0.400	247	0%	75	18.7%	2	0%	probably_damaging(0.984)	tolerated(0.63)	neutral(0.434)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF268	10795	genome.wustl.edu	37	12	133780300	133780300	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003415.2	+1	validated	p.T676	0.261	383	0%	99	25.3%	5	40%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF268	10795	genome.wustl.edu	37	12	133780923	133780923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003415.2	+1	validated	p.R884I	1.000	343	0%	94	18.1%	11	27.2%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF268	10795	genome.wustl.edu	37	12	133781091	133781091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003415.2	+1	validated	p.R940I	1.000	170	0%	46	19.6%	8	50%	possibly_damaging(0.913)	tolerated(0.14)	deleterious(0.614)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TPTE2	93492	genome.wustl.edu	37	13	20077364	20077364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199254.2	-1	validated	p.S4I	0.042	813	0.1%	611	21.3%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
MPHOSPH8	54737	genome.wustl.edu	37	13	20244448	20244448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017520.3	+1	validated	p.P801L	1.000	688	0%	368	22.6%	31	29%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZMYM5	9205	genome.wustl.edu	37	13	20398719	20398719	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142684.1	-1	validated	p.S636	1.000	497	0%	308	25.3%	3	33.3%	-	-	-	NULL
ZMYM5	9205	genome.wustl.edu	37	13	20412928	20412928	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142684.1	-1	validated	p.G262*	1.000	698	0%	268	16.8%	4	50%	-	-	-	HMMPfam_zf-FCS,HMMSmart_SM00746
ZMYM2	7750	genome.wustl.edu	37	13	20593749	20593749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003453.2	+1	validated	p.M525I	1.000	327	0.3%	197	24.4%	12	33.3%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
ZMYM2	7750	genome.wustl.edu	37	13	20632817	20632817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003453.2	+1	validated	p.H866Y	1.000	237	0%	90	14.4%	33	27.2%	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	NULL
ZMYM2	7750	genome.wustl.edu	37	13	20657110	20657110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003453.2	+1	validated	p.T1253M	1.000	340	0.6%	183	26.8%	44	20.4%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
GJA3	2700	genome.wustl.edu	37	13	20717413	20717413	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021954.3	-1	reviewed	p.S5	1.000	58	0%	79	15.2%	1	0%	-	-	-	HMMPfam_Connexin
GJB6	10804	genome.wustl.edu	37	13	20796939	20796939	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001110219.2	-1	reviewed	p.T227	0.000	833	0%	484	22.7%	0	-	-	-	-	NULL
CRYL1	51084	genome.wustl.edu	37	13	21006307	21006307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015974.2	-1	reviewed	p.E189D	0.994	151	0%	170	15.9%	101	35.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_3HCDH_N,PatternScan_3HCDH
CRYL1	51084	genome.wustl.edu	37	13	21013756	21013756	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015974.2	-1	reviewed	p.V138	0.557	200	0%	182	17.6%	95	47.3%	-	-	-	HMMPfam_3HCDH_N,superfamily_NAD(P)-binding Rossmann-fold domains
IFT88	8100	genome.wustl.edu	37	13	21176062	21176062	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175605.3	+1	reviewed	p.I353S	1.000	163	0%	121	23.1%	7	71.4%	benign(0.018)	tolerated(0.51)	neutral(0.009)	NULL
XPO4	64328	genome.wustl.edu	37	13	21374456	21374456	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022459.4	-1	validated	p.L662	1.000	291	0%	126	32.5%	3	66.6%	-	-	-	superfamily_ARM-type_fold
LATS2	26524	genome.wustl.edu	37	13	21549377	21549377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014572.2	-1	reviewed	p.L967M	1.000	301	0%	180	20.6%	14	42.8%	possibly_damaging(0.768)	deleterious(0)	deleterious(0.730)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SACS	26278	genome.wustl.edu	37	13	23907744	23907744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014363.4	-1	reviewed	p.G3424V	1.000	203	0%	116	18.1%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
SACS	26278	genome.wustl.edu	37	13	23909141	23909141	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014363.4	-1	reviewed	p.K2958	1.000	159	0%	100	17%	0	-	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23911922	23911922	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014363.4	-1	reviewed	p.S2031	0.928	110	0%	54	18.5%	0	-	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23912622	23912622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014363.4	-1	reviewed	p.S1798Y	0.882	265	0.4%	171	20.5%	0	-	benign(0.013)	deleterious(0.03)	neutral(0.365)	NULL
SACS	26278	genome.wustl.edu	37	13	23912892	23912892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014363.4	-1	reviewed	p.A1708V	1.000	147	0%	107	22.4%	0	-	probably_damaging(0.983)	tolerated(0.2)	deleterious(0.478)	NULL
SACS	26278	genome.wustl.edu	37	13	23912936	23912936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014363.4	-1	reviewed	p.M1693I	1.000	187	0%	107	16.8%	1	0%	benign(0.144)	tolerated(0.87)	neutral(0.013)	NULL
SACS	26278	genome.wustl.edu	37	13	23913275	23913275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014363.4	-1	reviewed	p.M1580I	1.000	425	0%	193	11.4%	0	-	benign(0)	tolerated(0.64)	neutral(0.003)	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
SACS	26278	genome.wustl.edu	37	13	23913700	23913700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014363.4	-1	reviewed	p.L1439I	1.000	536	0%	258	22.1%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
TNFRSF19	55504	genome.wustl.edu	37	13	24242971	24242971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018647.2	+1	reviewed	p.P327H	0.095	292	0%	186	22.6%	0	-	possibly_damaging(0.692)	deleterious(0)	deleterious(0.692)	NULL
MIPEP	4285	genome.wustl.edu	37	13	24438318	24438318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005932.2	-1	reviewed	p.M318I	1.000	172	0%	82	22%	21	14.2%	benign(0.003)	tolerated(0.19)	neutral(0.050)	HMMPfam_Peptidase_M3,superfamily_SSF55486
MIPEP	4285	genome.wustl.edu	37	13	24449027	24449027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005932.2	-1	reviewed	p.M187I	1.000	242	0%	144	17.4%	6	33.3%	benign(0.008)	tolerated(0.12)	neutral(0.261)	superfamily_SSF55486
C1QTNF9B-AS1	542767	genome.wustl.edu	37	13	24466010	24466010	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135816.1	+1	validated	p.L97	0.058	302	0%	334	11.7%	5	20%	-	-	-	NULL
SPATA13	221178	genome.wustl.edu	37	13	24797832	24797832	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000424834	+1	known	p.G293*	0.001	85	0%	76	23.7%	2	100%	-	-	-	NULL
SPATA13	221178	genome.wustl.edu	37	13	24825945	24825945	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000424834	+1	known	p.H741Y	1.000	89	0%	71	23.9%	3	33.3%	-	-	-	PatternScan_PROTAMINE_P1
SPATA13	221178	genome.wustl.edu	37	13	24863184	24863184	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000424834	+1	known	p.A943T	0.144	90	0%	105	12.4%	6	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
SPATA13	221178	genome.wustl.edu	37	13	24871544	24871544	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000424834	+1	known	p.W1122*	1.000	145	0%	104	24%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PARP4	143	genome.wustl.edu	37	13	24995292	24995292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006437.3	-1	reviewed	p.P1714S	0.001	259	0%	144	13.2%	216	39.3%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ATP12A	479	genome.wustl.edu	37	13	25262661	25262661	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001676.5	+1	reviewed	e4+1	1.000	133	0%	132	20.5%	0	-	-	-	-	-
RNF17	56163	genome.wustl.edu	37	13	25373616	25373616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031277.2	+1	reviewed	p.N495D	0.549	409	0%	132	10.6%	0	-	benign(0.4)	tolerated(0.06)	neutral(0.451)	HMMPfam_TUDOR
RNF17	56163	genome.wustl.edu	37	13	25376575	25376575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031277.2	+1	reviewed	p.K605N	1.000	337	0%	160	23.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CENPJ	55835	genome.wustl.edu	37	13	25457500	25457500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018451.3	-1	reviewed	p.N1278D	0.997	270	0%	226	27.4%	26	42.3%	benign(0.023)	tolerated(0.29)	neutral(0.030)	HMMPfam_Tcp10_C
CENPJ	55835	genome.wustl.edu	37	13	25480097	25480097	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018451.3	-1	reviewed	p.D693	0.982	320	0%	209	19.1%	3	33.3%	-	-	-	NULL
FAM123A	219287	genome.wustl.edu	37	13	25744167	25744167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152704.2	-1	validated	p.G531C	0.952	100	0%	125	20.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_WTX
MTMR6	9107	genome.wustl.edu	37	13	25831338	25831338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004685.3	-1	validated	p.F364S	1.000	181	0%	92	17.4%	17	11.7%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
NUPL1	9818	genome.wustl.edu	37	13	25889554	25889554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014089.3	+1	reviewed	p.G212C	0.982	660	0%	322	22.4%	4	25%	possibly_damaging(0.437)	tolerated(0.1)	neutral(0.429)	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26402264	26402264	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016529.4	+1	validated	p.F896	1.000	926	0%	400	21.5%	0	-	-	-	-	NULL
GPR12	2835	genome.wustl.edu	37	13	27333524	27333524	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005288.3	-1	validated	p.T147	0.662	83	0%	114	17.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LNX2	222484	genome.wustl.edu	37	13	28136817	28136817	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153371.3	-1	validated	p.R319	1.000	317	0%	105	22.9%	3	33.3%	-	-	-	NULL
LOC100287414	100287414	genome.wustl.edu	37	13	28240009	28240009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343233.1	-1	model	p.R123H	0.000	162	0%	110	22.7%	118	44.9%	-	-	-	NULL
CDX2	1045	genome.wustl.edu	37	13	28539033	28539033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001265.3	-1	validated	p.A221T	0.868	97	0%	143	23.1%	0	-	benign(0.025)	tolerated(0.09)	neutral(0.297)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
CDX2	1045	genome.wustl.edu	37	13	28539053	28539053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001265.3	-1	validated	p.R214Q	1.000	63	0%	118	26.3%	0	-	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
PAN3	255967	genome.wustl.edu	37	13	28846150	28846150	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175854.7	+1	validated	p.V464G	1.000	245	0%	117	26.5%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Kinase_like
PAN3	255967	genome.wustl.edu	37	13	28862171	28862171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175854.7	+1	validated	p.K612R	1.000	357	0%	116	24.1%	5	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FLT1	2321	genome.wustl.edu	37	13	28877506	28877506	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002019.4	-1	reviewed	e30-1	0.995	73	1.4%	28	25%	0	-	-	-	-	-
FLT1	2321	genome.wustl.edu	37	13	28959043	28959043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002019.4	-1	reviewed	p.H699Y	0.929	444	0%	342	17.3%	4	0%	possibly_damaging(0.704)	deleterious(0.02)	deleterious(0.637)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
FLT1	2321	genome.wustl.edu	37	13	29041666	29041666	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002019.4	-1	reviewed	p.L51	0.983	429	0.2%	168	12.5%	5	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
SLC46A3	283537	genome.wustl.edu	37	13	29286851	29286851	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135919.1	-1	validated	p.T342	0.640	165	0%	111	11.7%	6	0%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ENSG00000246716	0	genome.wustl.edu	37	13	29298059	29298059	+	RNA	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000500917	+1	known	NULL	0.157	51	0%	42	28.6%	0	-	-	-	-	-
MTUS2	23281	genome.wustl.edu	37	13	29599048	29599048	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033602.2	+1	validated	p.R81	0.000	102	0%	73	26%	0	-	-	-	-	NULL
MTUS2	23281	genome.wustl.edu	37	13	29599334	29599334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033602.2	+1	validated	p.L177I	0.210	133	0.8%	56	30.4%	0	-	benign(0.196)	deleterious(0.02)	neutral(0.402)	NULL
MTUS2	23281	genome.wustl.edu	37	13	29600693	29600693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033602.2	+1	validated	p.V630I	0.000	64	0%	47	29.8%	0	-	benign(0.029)	deleterious(0.01)	neutral(0.407)	NULL
MTUS2	23281	genome.wustl.edu	37	13	30077218	30077218	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033602.2	+1	validated	p.L1339	1.000	213	0%	225	23.1%	0	-	-	-	-	NULL
SLC7A1	6541	genome.wustl.edu	37	13	30088671	30088671	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003045.4	-1	validated	p.S612	0.951	32	0%	32	40.6%	11	27.2%	-	-	-	NULL
KATNAL1	84056	genome.wustl.edu	37	13	30805500	30805500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014380.1	-1	validated	p.S279Y	1.000	147	0%	41	17.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
KATNAL1	84056	genome.wustl.edu	37	13	30815149	30815149	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014380.1	-1	validated	p.D189	0.424	589	0%	215	15.3%	0	-	-	-	-	NULL
USPL1	10208	genome.wustl.edu	37	13	31221163	31221163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005800.4	+1	validated	p.K403E	0.999	398	0%	126	16.7%	8	37.5%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
C13orf33	84935	genome.wustl.edu	37	13	31491641	31491641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032849.3	+1	validated	p.T127I	0.000	324	0%	216	20.8%	0	-	benign(0.067)	tolerated(0.16)	neutral(0.064)	NULL
C13orf33	84935	genome.wustl.edu	37	13	31491642	31491642	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000428944	+1	known	p.P64H	0.000	323	0.3%	214	19.2%	0	-	-	-	-	NULL
HSPH1	10808	genome.wustl.edu	37	13	31722581	31722581	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006644.2	-1	validated	p.F392V	1.000	161	0%	84	20.2%	24	83.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain
HSPH1	10808	genome.wustl.edu	37	13	31725211	31725211	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006644.2	-1	validated	p.R261*	0.961	498	0.2%	289	14.9%	21	0%	-	-	-	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
HSPH1	10808	genome.wustl.edu	37	13	31728826	31728826	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006644.2	-1	validated	p.L125	1.000	467	0%	356	18%	22	77.2%	-	-	-	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
FRY	10129	genome.wustl.edu	37	13	32768297	32768297	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023037.2	+1	validated	p.C1203	1.000	375	0%	290	20.7%	0	-	-	-	-	NULL
FRY	10129	genome.wustl.edu	37	13	32849122	32849122	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023037.2	+1	validated	p.A2760	0.006	155	0%	157	17.2%	3	0%	-	-	-	NULL
ZAR1L	646799	genome.wustl.edu	37	13	32885806	32885806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136571.1	-1	reviewed	p.P86L	1.000	31	0%	43	14%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
BRCA2	675	genome.wustl.edu	37	13	32900706	32900706	+	Missense_Mutation	SNP	G	G	T	rs80358818	byCluster	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000059.3	+1	reviewed	p.S196I	1.000	428	0%	253	24.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BRCA2	675	genome.wustl.edu	37	13	32911095	32911095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000059.3	+1	reviewed	p.T868I	0.000	146	0%	102	14.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
BRCA2	675	genome.wustl.edu	37	13	32913807	32913807	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000059.3	+1	reviewed	p.I1772S	0.003	161	0%	80	22.5%	1	0%	benign(0.146)	deleterious(0)	neutral(0.457)	NULL
BRCA2	675	genome.wustl.edu	37	13	32914152	32914152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000059.3	+1	reviewed	p.T1887M	0.001	151	0%	105	24.8%	0	-	benign(0.094)	tolerated(0.18)	neutral(0.063)	NULL
BRCA2	675	genome.wustl.edu	37	13	32918718	32918718	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000059.3	+1	reviewed	p.L2289	0.999	31	0%	71	16.9%	0	-	-	-	-	NULL
BRCA2	675	genome.wustl.edu	37	13	32972366	32972366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000059.3	+1	reviewed	p.S3239Y	0.050	356	0%	129	44.2%	6	83.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
N4BP2L2	10443	genome.wustl.edu	37	13	33110218	33110218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014887.2	-1	validated	p.G316E	0.005	157	0%	122	20.5%	23	39.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
N4BP2L2	10443	genome.wustl.edu	37	13	33110968	33110968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014887.2	-1	validated	p.S66I	0.000	408	0%	300	22.7%	9	44.4%	benign(0.009)	tolerated(0.83)	neutral(0.001)	NULL
N4BP2L2	10443	genome.wustl.edu	37	13	33111072	33111072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014887.2	-1	validated	p.E31D	0.313	318	0%	278	21.2%	15	46.6%	benign(0.008)	tolerated(0.61)	neutral(0.004)	NULL
N4BP2L2	10443	genome.wustl.edu	37	13	33111100	33111100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014887.2	-1	validated	p.R22H	0.021	314	0%	306	20.3%	16	18.7%	possibly_damaging(0.95)	tolerated(0.06)	deleterious(0.716)	NULL
PDS5B	23047	genome.wustl.edu	37	13	33320217	33320217	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015032.3	+1	reviewed	p.Q905	1.000	271	0%	123	13%	8	25%	-	-	-	superfamily_ARM repeat
PDS5B	23047	genome.wustl.edu	37	13	33333804	33333804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015032.3	+1	reviewed	p.M1116I	1.000	264	0.4%	110	15.5%	15	20%	benign(0.007)	tolerated(0.23)	neutral(0.042)	NULL
PDS5B	23047	genome.wustl.edu	37	13	33344280	33344280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015032.3	+1	reviewed	p.G1216C	1.000	133	0%	47	14.9%	18	16.6%	benign(0.237)	tolerated(0.05)	neutral(0.369)	NULL
KL	9365	genome.wustl.edu	37	13	33629265	33629265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004795.3	+1	reviewed	p.S471I	1.000	285	0%	151	17.2%	0	-	benign(0.208)	deleterious(0.01)	neutral(0.426)	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases
STARD13	90627	genome.wustl.edu	37	13	33680957	33680957	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178006.3	-1	validated	p.Y1054	1.000	163	0%	66	18.2%	9	22.2%	-	-	-	HMMPfam_START,HMMSmart_SM00234,superfamily_Bet v1-like
STARD13	90627	genome.wustl.edu	37	13	33700295	33700295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178006.3	-1	validated	p.V669I	1.000	194	1%	157	22.9%	3	33.3%	possibly_damaging(0.932)	deleterious(0.03)	deleterious(0.743)	NULL
STARD13	90627	genome.wustl.edu	37	13	33703702	33703702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178006.3	-1	validated	p.A371V	0.998	65	0%	75	18.7%	2	50%	benign(0.178)	tolerated(0.12)	neutral(0.277)	NULL
RFC3	5983	genome.wustl.edu	37	13	34409299	34409299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002915.3	+1	reviewed	p.R275H	1.000	336	0%	130	20%	34	29.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_DNA polymerase III clamp loader subunits C-terminal domain,HMMPfam_RFC-E_C
MAB21L1	4081	genome.wustl.edu	37	13	36049451	36049451	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005584.4	-1	reviewed	p.K275	1.000	112	0%	161	23%	0	-	-	-	-	HMMPfam_Mab-21
NBEA	26960	genome.wustl.edu	37	13	36167535	36167535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015678.4	+1	validated	p.S2416F	0.403	472	0%	208	13.5%	0	-	benign(0.056)	deleterious(0)	neutral(0.448)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_ARM repeat
SOHLH2	54937	genome.wustl.edu	37	13	36788660	36788660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017826.2	-1	validated	p.A2S	1.000	27	0%	52	23.1%	0	-	benign(0.079)	deleterious(0)	neutral(0.450)	NULL
SPG20	23111	genome.wustl.edu	37	13	36878616	36878616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142294.1	-1	reviewed	p.Q629H	0.191	871	0%	688	15%	26	26.9%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
LOC651868	651868	genome.wustl.edu	37	13	37064275	37064275	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001721200.1	-1	model	p.I83S	1.000	58	0%	11	54.5%	0	-	-	-	-	HMMSmart_SM00414,superfamily_Histone-fold
SMAD9	4093	genome.wustl.edu	37	13	37453431	37453431	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127217.2	-1	reviewed	p.R132	1.000	28	0%	17	29.4%	0	-	-	-	-	HMMPfam_MH1,HMMSmart_SM00523,superfamily_SMAD MH1 domain
FAM48A	55578	genome.wustl.edu	37	13	37607587	37607587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014286.2	-1	validated	p.R236W	1.000	507	0%	88	10.2%	29	65.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM48A	55578	genome.wustl.edu	37	13	37614812	37614812	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014286.2	-1	validated	p.C138	1.000	375	0.3%	149	17.4%	20	60%	-	-	-	NULL
TRPC4	7223	genome.wustl.edu	37	13	38357204	38357204	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003306.1	-1	validated	p.L89	0.699	218	0%	51	21.6%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
FREM2	341640	genome.wustl.edu	37	13	39264440	39264440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207361.4	+1	reviewed	p.D987Y	1.000	218	0%	214	23.8%	1	100%	possibly_damaging(0.816)	tolerated(0.12)	deleterious(0.569)	NULL
FREM2	341640	genome.wustl.edu	37	13	39266063	39266063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207361.4	+1	reviewed	p.D1528N	1.000	185	0%	166	16.9%	0	-	probably_damaging(1)	tolerated(0.43)	deleterious(0.513)	NULL
FREM2	341640	genome.wustl.edu	37	13	39432093	39432093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207361.4	+1	reviewed	p.L2380M	1.000	491	0%	131	10.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FREM2	341640	genome.wustl.edu	37	13	39438677	39438677	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207361.4	+1	reviewed	p.F2639	1.000	227	0%	59	30.5%	0	-	-	-	-	NULL
FOXO1	2308	genome.wustl.edu	37	13	41134954	41134954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002015.3	-1	reviewed	p.R225H	1.000	146	0%	91	12.1%	8	12.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
MRPS31	10240	genome.wustl.edu	37	13	41331012	41331012	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005830.3	-1	reviewed	p.K246I	0.029	349	0%	298	24.8%	34	52.9%	benign(0.132)	tolerated(0.08)	neutral(0.311)	NULL
SLC25A15	10166	genome.wustl.edu	37	13	41381542	41381542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014252.3	+1	reviewed	p.G189S	0.989	544	0%	413	19.4%	9	11.1%	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
SLC25A15	10166	genome.wustl.edu	37	13	41382582	41382582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014252.3	+1	reviewed	p.P211S	1.000	677	0%	408	16.4%	16	31.2%	benign(0.196)	tolerated(0.34)	neutral(0.041)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
KBTBD6	89890	genome.wustl.edu	37	13	41705285	41705285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152903.4	-1	validated	p.E455K	1.000	157	0%	114	21.9%	3	66.6%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
MTRF1	9617	genome.wustl.edu	37	13	41808104	41808104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004294.2	-1	reviewed	p.T304A	1.000	355	0%	115	27%	14	78.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RF-1,superfamily_SSF75620
MTRF1	9617	genome.wustl.edu	37	13	41834650	41834650	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004294.2	-1	reviewed	p.E132*	1.000	602	0%	307	24.4%	4	50%	-	-	-	superfamily_SSF75620
NAA16	79612	genome.wustl.edu	37	13	41932462	41932462	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024561.4	+1	validated	p.P370	0.997	216	0%	229	29.7%	3	0%	-	-	-	superfamily_TPR-like
NAA16	79612	genome.wustl.edu	37	13	41946362	41946362	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024561.4	+1	validated	p.A657	0.822	254	0%	100	21%	4	50%	-	-	-	superfamily_TPR-like
RGCC	28984	genome.wustl.edu	37	13	42040958	42040958	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014059.2	+1	reviewed	e3-1	1.000	270	0%	238	10.9%	1	0%	-	-	-	-
KIAA0564	23078	genome.wustl.edu	37	13	42264319	42264319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015058.1	-1	validated	p.G1320E	1.000	261	0%	105	21.9%	5	40%	benign(0.042)	tolerated(0.19)	neutral(0.052)	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42303759	42303759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015058.1	-1	validated	p.P853T	1.000	420	0%	109	13.8%	16	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DGKH	160851	genome.wustl.edu	37	13	42729884	42729884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178009.2	+1	reviewed	p.V191M	1.000	184	0%	155	20.6%	2	50%	possibly_damaging(0.816)	deleterious(0.04)	deleterious(0.657)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
AKAP11	11215	genome.wustl.edu	37	13	42877106	42877106	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016248.2	+1	reviewed	p.E1408D	0.119	123	0%	43	23.3%	1	0%	benign(0.108)	tolerated(0.07)	neutral(0.328)	NULL
AKAP11	11215	genome.wustl.edu	37	13	42877649	42877649	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016248.2	+1	reviewed	p.Y1589	0.011	237	0%	52	23.1%	6	0%	-	-	-	NULL
TNFSF11	8600	genome.wustl.edu	37	13	43180746	43180746	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003701.3	+1	reviewed	p.L216	1.000	365	0%	107	14%	0	-	-	-	-	HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like
FAM216B	144809	genome.wustl.edu	37	13	43358195	43358195	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182508.2	+1	validated	e1-1	0.004	382	0%	171	17%	0	-	-	-	-	-
LACC1	144811	genome.wustl.edu	37	13	44455220	44455220	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128303.1	+1	validated	p.Y33	0.024	324	0%	432	25.7%	3	33.3%	-	-	-	NULL
TSC22D1	8848	genome.wustl.edu	37	13	45149039	45149039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183422.2	-1	validated	p.G391E	0.982	316	0%	281	22.1%	13	46.1%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
NUFIP1	26747	genome.wustl.edu	37	13	45563190	45563190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012345.2	-1	validated	p.P128T	0.000	87	0%	95	20%	3	66.6%	benign(0.06)	tolerated(0.62)	neutral(0.008)	NULL
KCTD4	386618	genome.wustl.edu	37	13	45768683	45768683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198404.2	-1	validated	p.R7I	1.000	604	0%	271	25.1%	0	-	unknown(0)	deleterious(0)	-	NULL
TPT1	7178	genome.wustl.edu	37	13	45913655	45913655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003295.2	-1	provisional	p.L126F	1.000	422	0%	620	21.5%	5857	31.6%	benign(0.045)	tolerated(0.06)	neutral(0.325)	HMMPfam_TCTP,superfamily_Mss4-like
SLC25A30	253512	genome.wustl.edu	37	13	45975289	45975289	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010875.2	-1	validated	p.P181	0.019	166	0%	159	22.6%	5	20%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SLC25A30	253512	genome.wustl.edu	37	13	45985539	45985539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010875.2	-1	validated	p.P8S	1.000	219	0%	215	23.7%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
ZC3H13	23091	genome.wustl.edu	37	13	46541722	46541722	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015070.3	-1	validated	p.D1413A	1.000	343	0%	124	17.7%	16	43.7%	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46543970	46543970	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015070.3	-1	validated	p.R903	0.997	804	0.1%	251	10.8%	13	23%	-	-	-	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46616331	46616331	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015070.3	-1	validated	p.R103*	1.000	543	0%	446	20.9%	6	16.6%	-	-	-	NULL
LRCH1	23143	genome.wustl.edu	37	13	47269154	47269154	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015116.2	+1	reviewed	e9+2	0.994	384	0%	107	23.4%	0	-	-	-	-	-
ESD	2098	genome.wustl.edu	37	13	47345584	47345584	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001984.1	-1	reviewed	p.H272	1.000	547	0%	134	18.7%	124	42.7%	-	-	-	HMMPfam_Esterase,superfamily_SSF53474
HTR2A	3356	genome.wustl.edu	37	13	47409002	47409002	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000621.3	-1	reviewed	p.D462	0.000	254	0%	112	27.7%	0	-	-	-	-	NULL
HTR2A	3356	genome.wustl.edu	37	13	47469874	47469874	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000621.3	-1	reviewed	p.S56	1.000	315	0%	388	21.4%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
SUCLA2	8803	genome.wustl.edu	37	13	48523092	48523092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003850.2	-1	reviewed	p.D434Y	1.000	535	0%	151	19.2%	127	45.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ligase_CoA,superfamily_Succinyl-CoA synthetase domains
CYSLTR2	57105	genome.wustl.edu	37	13	49281617	49281617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020377.2	+1	reviewed	p.L222M	0.857	255	0%	70	22.9%	0	-	benign(0.005)	tolerated(0.24)	neutral(0.037)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CYSLTR2	57105	genome.wustl.edu	37	13	49281757	49281757	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020377.2	+1	reviewed	p.T268	0.002	356	0%	119	25.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CDADC1	81602	genome.wustl.edu	37	13	49865876	49865876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030911.2	+1	validated	p.R510C	0.968	183	0%	99	19.2%	4	25%	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
KPNA3	3839	genome.wustl.edu	37	13	50299559	50299559	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002267.3	-1	reviewed	p.V154	0.998	262	0%	210	13.8%	9	22.2%	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
RNASEH2B	79621	genome.wustl.edu	37	13	51509073	51509073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024570.2	+1	reviewed	p.C125Y	0.787	417	0%	144	16.7%	75	37.3%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMPfam_RNase_H2-Ydr279
GUCY1B2	2974	genome.wustl.edu	37	13	51594597	51594597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000389600	-1	known	p.L262F	1.000	353	0%	127	16.5%	1	0%	-	-	-	HMMSmart_CYCc,HMMPfam_HNOBA
INTS6	26512	genome.wustl.edu	37	13	51943258	51943258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012141.2	-1	reviewed	p.L765I	1.000	360	0%	199	24.1%	18	22.2%	probably_damaging(0.971)	tolerated(0.48)	neutral(0.423)	NULL
INTS6	26512	genome.wustl.edu	37	13	51969571	51969571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012141.2	-1	reviewed	p.E160K	1.000	200	0%	66	21.2%	9	44.4%	benign(0.261)	deleterious(0.04)	neutral(0.376)	NULL
DHRS12	79758	genome.wustl.edu	37	13	52346011	52346011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031719.1	-1	provisional	p.G169W	0.000	69	0%	71	11.3%	12	16.6%	benign(0.008)	deleterious(0.02)	neutral(0.383)	superfamily_NAD(P)-bd
ATP7B	540	genome.wustl.edu	37	13	52520432	52520432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000053.2	-1	reviewed	p.E1016D	0.999	54	0%	55	23.6%	6	66.6%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
ATP7B	540	genome.wustl.edu	37	13	52523858	52523858	+	Silent	SNP	C	C	T	rs141872590	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000053.2	-1	reviewed	p.T935	0.983	276	0%	240	22.9%	0	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
ATP7B	540	genome.wustl.edu	37	13	52534422	52534422	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000053.2	-1	reviewed	p.G661	0.994	220	0%	102	21.6%	2	100%	-	-	-	NULL
ATP7B	540	genome.wustl.edu	37	13	52548188	52548188	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000053.2	-1	reviewed	p.I390L	0.000	268	0%	86	17.4%	3	66.6%	possibly_damaging(0.559)	tolerated(0.16)	neutral(0.250)	HMMPfam_HMA,superfamily_HMA heavy metal-associated domain,PatternScan_HMA_1
ATP7B	540	genome.wustl.edu	37	13	52548410	52548410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000053.2	-1	reviewed	p.E316K	1.000	118	0%	53	26.4%	1	100%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_HMA,superfamily_HMA heavy metal-associated domain
NEK5	341676	genome.wustl.edu	37	13	52650203	52650203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199289.1	-1	provisional	p.A575D	0.198	601	0%	778	18.3%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
NEK5	341676	genome.wustl.edu	37	13	52682523	52682523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199289.1	-1	provisional	p.R162Q	0.215	438	0%	237	26.6%	2	0%	benign(0.076)	tolerated(0.29)	neutral(0.035)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
NEK3	4752	genome.wustl.edu	37	13	52707825	52707825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000258597	-1	known	p.T480M	1.000	154	0%	197	25.4%	16	56.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NEK3	4752	genome.wustl.edu	37	13	52707897	52707897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000258597	-1	known	p.S456N	0.000	200	0%	213	29.1%	13	53.8%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
NEK3	4752	genome.wustl.edu	37	13	52725352	52725352	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000258597	-1	known	p.A159	1.000	437	0%	409	20%	4	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
THSD1	55901	genome.wustl.edu	37	13	52951591	52951591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018676.3	-1	reviewed	p.E838D	0.999	276	0%	205	9.8%	10	10%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
THSD1	55901	genome.wustl.edu	37	13	52952399	52952399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018676.3	-1	reviewed	p.S569I	0.001	66	0%	44	29.5%	4	0%	benign(0.036)	tolerated(0.15)	neutral(0.243)	NULL
THSD1	55901	genome.wustl.edu	37	13	52952842	52952842	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018676.3	-1	reviewed	p.S421	0.987	188	0%	122	15.6%	1	0%	-	-	-	NULL
VPS36	51028	genome.wustl.edu	37	13	52990015	52990015	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016075.2	-1	validated	p.S371T	1.000	252	0%	289	21.5%	19	63.1%	benign(0.203)	tolerated(0.14)	neutral(0.269)	NULL
CKAP2	26586	genome.wustl.edu	37	13	53036503	53036503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098525.1	+1	validated	p.R370H	0.995	256	0%	292	20.9%	16	25%	possibly_damaging(0.896)	tolerated(0.06)	deleterious(0.676)	NULL
SUGT1	10910	genome.wustl.edu	37	13	53233356	53233356	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130912.1	+1	reviewed	p.E100D	0.935	63	0%	141	16.3%	55	49%	benign(0.128)	tolerated(0.13)	neutral(0.263)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
SUGT1	10910	genome.wustl.edu	37	13	53239821	53239821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130912.1	+1	reviewed	p.K190E	1.000	333	0%	251	23.5%	80	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HSP20-like chaperones,HMMPfam_CS
LECT1	11061	genome.wustl.edu	37	13	53313764	53313764	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007015.2	-1	reviewed	e1+1	1.000	189	0%	276	23.2%	0	-	-	-	-	-
MIR759	100313778	genome.wustl.edu	37	13	53384198	53384198	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390224	+1	known	NULL	1.000	42	0%	52	19.2%	0	-	-	-	-	-
PCDH8	5100	genome.wustl.edu	37	13	53419564	53419564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002590.2	-1	reviewed	p.Q945H	1.000	176	0%	245	17.6%	0	-	possibly_damaging(0.928)	tolerated(0.57)	neutral(0.382)	NULL
OLFM4	10562	genome.wustl.edu	37	13	53624216	53624216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006418.3	+1	reviewed	p.Q281H	0.000	286	0%	82	13.4%	2	0%	possibly_damaging(0.836)	tolerated(0.16)	neutral(0.379)	HMMPfam_OLF,HMMSmart_OLF
OLFM4	10562	genome.wustl.edu	37	13	53624729	53624729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006418.3	+1	reviewed	p.E452D	0.999	454	0%	94	18.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_OLF,HMMSmart_OLF
PCDH17	27253	genome.wustl.edu	37	13	58206923	58206923	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040429.2	+1	reviewed	p.S81	0.998	23	0%	29	27.6%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDH17	27253	genome.wustl.edu	37	13	58207008	58207008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040429.2	+1	reviewed	p.A110T	1.000	57	0%	90	23.3%	3	0%	possibly_damaging(0.907)	tolerated(0.16)	neutral(0.420)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDH17	27253	genome.wustl.edu	37	13	58208417	58208417	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040429.2	+1	reviewed	p.N579	1.000	27	0%	16	37.5%	2	0%	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDH17	27253	genome.wustl.edu	37	13	58208595	58208595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040429.2	+1	reviewed	p.D639N	0.997	14	0%	21	33.3%	0	-	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH17	27253	genome.wustl.edu	37	13	58208996	58208996	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040429.2	+1	reviewed	p.S772	1.000	162	0%	140	21.4%	1	0%	-	-	-	NULL
PCDH17	27253	genome.wustl.edu	37	13	58298880	58298880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040429.2	+1	reviewed	p.V978I	1.000	191	0%	81	17.3%	3	0%	benign(0.008)	tolerated(1)	-	NULL
PCDH17	27253	genome.wustl.edu	37	13	58299381	58299381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040429.2	+1	reviewed	p.L1145I	1.000	201	0%	61	16.4%	2	50%	probably_damaging(0.991)	tolerated(0.3)	deleterious(0.473)	NULL
LOC341689	341689	genome.wustl.edu	37	13	59104758	59104758	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_017487.3	+1	model	NULL	0.372	187	0%	166	22.3%	0	-	-	-	-	-
DIAPH3	81624	genome.wustl.edu	37	13	60240791	60240791	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042517.1	-1	validated	p.L1170R	0.996	290	0%	211	22.7%	21	33.3%	benign(0.012)	deleterious(0)	neutral(0.445)	NULL
DIAPH3	81624	genome.wustl.edu	37	13	60348917	60348917	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042517.1	-1	validated	p.A1068	1.000	219	0%	62	25.8%	20	55%	-	-	-	HMMSmart_SM00498,HMMPfam_Drf_DAD
TDRD3	81550	genome.wustl.edu	37	13	61068636	61068636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030794.2	+1	validated	p.R169Q	1.000	611	0.3%	243	22.6%	21	38%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
PCDH20	64881	genome.wustl.edu	37	13	61986583	61986583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022843.3	-1	validated	p.P550L	1.000	238	0%	247	22.7%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Cadherin,superfamily_Cadherin
LOC647262	647262	genome.wustl.edu	37	13	64321019	64321019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_934622.3	+1	model	p.G29V	0.040	138	0%	152	22.4%	0	-	unknown(0)	deleterious(0)	-	NULL
PCDH9	5101	genome.wustl.edu	37	13	66878991	66878991	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203487.2	-1	reviewed	p.K1170	1.000	418	0%	84	19%	1	0%	-	-	-	NULL
PCDH9	5101	genome.wustl.edu	37	13	67799770	67799770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203487.2	-1	reviewed	p.L935M	1.000	260	0%	236	19.1%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Protocadherin
PCDH9	5101	genome.wustl.edu	37	13	67800247	67800247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203487.2	-1	reviewed	p.D776N	1.000	262	0%	235	25.1%	0	-	benign(0.334)	deleterious(0)	deleterious(0.549)	HMMSmart_SM00112,superfamily_Cadherin-like
KLHL1	57626	genome.wustl.edu	37	13	70371043	70371043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020866.2	-1	validated	p.A489V	1.000	441	0%	256	22.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL1	57626	genome.wustl.edu	37	13	70514219	70514219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020866.2	-1	validated	p.A323T	1.000	194	0%	68	20.6%	0	-	benign(0.008)	tolerated(1)	-	HMMPfam_BACK
DACH1	1602	genome.wustl.edu	37	13	72147001	72147001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080759.4	-1	reviewed	p.P424T	1.000	298	0%	110	20%	1	0%	probably_damaging(0.983)	tolerated(0.49)	neutral(0.440)	NULL
TBC1D4	9882	genome.wustl.edu	37	13	75900509	75900509	+	Silent	SNP	C	C	T	rs143268388	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014832.2	-1	validated	p.P619	0.995	230	0%	109	17.4%	3	0%	-	-	-	NULL
LMO7	4008	genome.wustl.edu	37	13	76395705	76395705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015842.2	+1	reviewed	p.S634Y	0.988	147	0%	45	13.3%	15	40%	benign(0.159)	deleterious(0.01)	neutral(0.420)	NULL
CLN5	1203	genome.wustl.edu	37	13	77569199	77569199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006493.2	+1	reviewed	p.R108C	1.000	248	0%	342	19.6%	10	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77720322	77720322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015057.4	-1	validated	p.R2350C	1.000	266	0%	145	20%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_E set domains
MYCBP2	23077	genome.wustl.edu	37	13	77724943	77724943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015057.4	-1	validated	p.S2315P	0.985	534	0%	295	18%	0	-	benign(0.039)	tolerated(0.87)	neutral(0.003)	superfamily_E set domains
MYCBP2	23077	genome.wustl.edu	37	13	77751986	77751986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015057.4	-1	validated	p.A1708V	1.000	291	0%	210	22.4%	2	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_PHR
MYCBP2	23077	genome.wustl.edu	37	13	77836212	77836212	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015057.4	-1	validated	p.A503	1.000	399	0%	166	16.9%	1	100%	-	-	-	superfamily_RCC1/BLIP-II
SCEL	8796	genome.wustl.edu	37	13	78141835	78141835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144777.2	+1	validated	p.A104V	0.927	237	0%	141	12.1%	2	0%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
SCEL	8796	genome.wustl.edu	37	13	78177210	78177210	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144777.2	+1	validated	e17-1	0.015	115	0%	48	22.9%	0	-	-	-	-	-
SLAIN1	122060	genome.wustl.edu	37	13	78318542	78318542	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040153.2	+1	validated	p.Q56	1.000	149	0%	24	29.2%	14	64.2%	-	-	-	NULL
RNF219	79596	genome.wustl.edu	37	13	79190595	79190595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024546.3	-1	validated	p.S434Y	0.994	135	0%	106	23.6%	2	0%	possibly_damaging(0.519)	deleterious(0.01)	deleterious(0.580)	NULL
SPRY2	10253	genome.wustl.edu	37	13	80911238	80911238	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005842.2	-1	reviewed	p.C201	1.000	217	0%	195	25.1%	224	43.3%	-	-	-	HMMPfam_Sprouty
SLITRK1	114798	genome.wustl.edu	37	13	84453856	84453856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052910.1	-1	reviewed	p.S596I	1.000	254	0%	182	24.2%	0	-	possibly_damaging(0.598)	tolerated(0.27)	neutral(0.240)	NULL
SLITRK1	114798	genome.wustl.edu	37	13	84453964	84453964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052910.1	-1	reviewed	p.T560M	1.000	148	0%	112	18.8%	0	-	benign(0.427)	deleterious(0)	deleterious(0.584)	HMMSmart_LRRCT,superfamily_SSF52058
SLITRK1	114798	genome.wustl.edu	37	13	84454795	84454795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052910.1	-1	reviewed	p.P283H	1.000	321	0%	350	12%	0	-	probably_damaging(0.99)	tolerated(0.32)	neutral(0.466)	NULL
SLITRK1	114798	genome.wustl.edu	37	13	84455212	84455212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052910.1	-1	reviewed	p.D144G	1.000	60	0%	93	19.4%	0	-	benign(0.384)	tolerated(0.34)	neutral(0.145)	superfamily_SSF52058
SLITRK6	84189	genome.wustl.edu	37	13	86368839	86368839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032229.2	-1	validated	p.T602M	0.997	281	0%	81	14.8%	0	-	possibly_damaging(0.504)	tolerated(0.1)	neutral(0.455)	NULL
SLITRK5	26050	genome.wustl.edu	37	13	88327819	88327819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015567.1	+1	validated	p.G59D	1.000	256	0%	337	24%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_L domain-like
SLITRK5	26050	genome.wustl.edu	37	13	88328829	88328829	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015567.1	+1	validated	p.R396*	1.000	104	0%	141	22.7%	0	-	-	-	-	HMMPfam_LRRNT,superfamily_L domain-like
SLITRK5	26050	genome.wustl.edu	37	13	88329151	88329151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015567.1	+1	validated	p.P503L	0.018	75	0%	158	20.3%	0	-	benign(0)	tolerated(0.48)	neutral(0.011)	HMMSmart_SM00369,superfamily_L domain-like
SLITRK5	26050	genome.wustl.edu	37	13	88329334	88329334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015567.1	+1	validated	p.P564H	1.000	96	0%	100	26%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00082,superfamily_L domain-like
GPC5	2262	genome.wustl.edu	37	13	92101063	92101063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004466.4	+1	reviewed	p.R71K	1.000	303	0%	104	18.3%	0	-	benign(0.004)	tolerated(0.19)	neutral(0.050)	HMMPfam_Glypican
GPC6	10082	genome.wustl.edu	37	13	94680110	94680110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005708.3	+1	reviewed	p.N280S	1.000	156	0%	152	14.5%	0	-	benign(0.149)	tolerated(0.08)	neutral(0.313)	HMMPfam_Glypican
DCT	1638	genome.wustl.edu	37	13	95092216	95092216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001129889.1	-1	validated	p.R532Q	0.305	300	0.3%	53	28.3%	0	-	benign(0.222)	tolerated(0.2)	neutral(0.071)	NULL
ABCC4	10257	genome.wustl.edu	37	13	95686994	95686994	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005845.3	-1	reviewed	e30-1	1.000	309	0%	177	26%	0	-	-	-	-	-
DZIP1	22873	genome.wustl.edu	37	13	96242533	96242533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198968.2	-1	validated	p.D615Y	0.079	394	0%	185	21.6%	4	25%	probably_damaging(0.964)	deleterious(0.03)	deleterious(0.771)	NULL
UGGT2	55757	genome.wustl.edu	37	13	96665578	96665578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020121.3	-1	validated	p.L215I	1.000	247	0%	171	18.7%	12	41.6%	probably_damaging(0.978)	tolerated(0.1)	deleterious(0.707)	NULL
OXGR1	27199	genome.wustl.edu	37	13	97639594	97639594	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080818.3	-1	reviewed	p.S140	0.904	185	0%	130	19.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MBNL2	10150	genome.wustl.edu	37	13	97999118	97999118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144778.2	+1	reviewed	p.H201Y	1.000	120	0%	111	24.3%	11	54.5%	benign(0.333)	deleterious(0)	deleterious(0.549)	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1
MBNL2	10150	genome.wustl.edu	37	13	98009738	98009738	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144778.2	+1	reviewed	p.A269	1.000	224	0%	157	12.1%	7	42.8%	-	-	-	NULL
IPO5	3843	genome.wustl.edu	37	13	98658451	98658451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002271.4	+1	reviewed	p.T540N	1.000	316	0%	166	16.9%	48	54.1%	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	superfamily_ARM-type_fold
IPO5	3843	genome.wustl.edu	37	13	98670804	98670804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002271.4	+1	reviewed	p.H912Q	1.000	254	0%	98	20.4%	139	7.9%	possibly_damaging(0.901)	tolerated(0.43)	neutral(0.370)	superfamily_ARM-type_fold
SLC15A1	6564	genome.wustl.edu	37	13	99339866	99339866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005073.3	-1	reviewed	p.S599Y	1.000	256	0%	115	11.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PTR2,superfamily_MFS general substrate transporter
DOCK9	23348	genome.wustl.edu	37	13	99508280	99508280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000357329	-1	known	p.P1236S	1.000	467	0%	253	23.3%	5	20%	possibly_damaging(0.906)	tolerated(0.09)	deleterious(0.656)	NULL
DOCK9	23348	genome.wustl.edu	37	13	99520541	99520541	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130049.1	-1	validated	p.R1013*	1.000	292	0%	121	19%	4	0%	-	-	-	NULL
UBAC2	337867	genome.wustl.edu	37	13	100037562	100037562	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144072.1	+1	validated	p.V336	0.842	92	0%	90	16.7%	109	16.5%	-	-	-	HMMPfam_UBA,superfamily_UBA-like,HMMSmart_SM00165
TM9SF2	9375	genome.wustl.edu	37	13	100169902	100169902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004800.1	+1	provisional	p.S69L	1.000	447	0%	199	16.1%	27	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TM9SF2	9375	genome.wustl.edu	37	13	100172344	100172344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004800.1	+1	provisional	p.Q98H	0.977	294	0%	199	23.6%	49	34.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_EMP70
NALCN	259232	genome.wustl.edu	37	13	101710387	101710387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052867.2	-1	validated	p.L1643M	0.997	84	0%	48	12.5%	1	0%	possibly_damaging(0.855)	deleterious(0.03)	deleterious(0.695)	NULL
NALCN	259232	genome.wustl.edu	37	13	101712175	101712175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052867.2	-1	validated	p.P1634T	1.000	153	0%	76	26.3%	1	100%	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
NALCN	259232	genome.wustl.edu	37	13	101742110	101742110	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052867.2	-1	validated	p.I1131	1.000	323	0%	66	30.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
FGF14	2259	genome.wustl.edu	37	13	102378989	102378989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175929.2	-1	reviewed	p.A199T	1.000	385	0%	170	30%	0	-	possibly_damaging(0.504)	tolerated(0.6)	neutral(0.173)	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like
LOC643677	643677	genome.wustl.edu	37	13	103385420	103385420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344085.1	-1	model	p.A5724V	0.000	725	0%	186	17.7%	0	-	unknown(0)	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103385455	103385455	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344085.1	-1	model	p.T5712	0.000	707	0%	163	16.6%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103388430	103388430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344085.1	-1	model	p.A4721T	0.000	561	0%	149	22.8%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
LOC643677	643677	genome.wustl.edu	37	13	103394448	103394448	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344085.1	-1	model	p.E2796*	0.000	351	0.3%	92	20.7%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103397639	103397639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344085.1	-1	model	p.R1732H	0.006	197	0%	62	22.6%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103399407	103399407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344085.1	-1	model	p.L1143M	0.000	370	0%	109	28.4%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103402135	103402135	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344085.1	-1	model	p.A233	0.014	192	0%	41	14.6%	0	-	-	-	-	NULL
TEX30	93081	genome.wustl.edu	37	13	103421845	103421845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138779.3	-1	validated	p.C21Y	1.000	213	0%	287	20.6%	20	35%	benign(0.032)	tolerated(0.23)	neutral(0.043)	superfamily_SSF53474
ERCC5	2073	genome.wustl.edu	37	13	103515434	103515434	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000123.2	+1	reviewed	p.S645	0.840	175	0%	81	21%	31	41.9%	-	-	-	superfamily_PIN domain-like
ERCC5	2073	genome.wustl.edu	37	13	103527876	103527876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000123.2	+1	reviewed	p.N1062D	0.000	237	0%	144	24.3%	58	39.6%	benign(0.028)	tolerated(0.63)	neutral(0.005)	NULL
EFNB2	1948	genome.wustl.edu	37	13	107145555	107145555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004093.2	-1	reviewed	p.G279S	1.000	190	0%	130	26.2%	4	25%	benign(0.056)	tolerated(0.46)	neutral(0.015)	NULL
LIG4	3981	genome.wustl.edu	37	13	108862201	108862201	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098268.1	-1	reviewed	p.G472	0.009	352	0%	402	25.4%	3	66.6%	-	-	-	NULL
ABHD13	84945	genome.wustl.edu	37	13	108882048	108882048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032859.2	+1	validated	p.S161N	1.000	299	0%	184	22.3%	16	31.2%	possibly_damaging(0.916)	deleterious(0.04)	deleterious(0.716)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
MYO16	23026	genome.wustl.edu	37	13	109661346	109661346	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015011.1	+1	validated	p.E826	1.000	243	0%	169	12.4%	0	-	-	-	-	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO16	23026	genome.wustl.edu	37	13	109831938	109831938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015011.1	+1	validated	p.G1769V	0.000	389	0%	203	19.7%	0	-	benign(0.339)	deleterious(0.01)	deleterious(0.513)	NULL
COL4A1	1282	genome.wustl.edu	37	13	110833653	110833653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001845.4	-1	reviewed	p.V727M	0.000	109	0%	90	22.2%	40	27.5%	possibly_damaging(0.928)	tolerated(0.23)	neutral(0.417)	HMMPfam_Collagen
COL4A1	1282	genome.wustl.edu	37	13	110838761	110838761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001845.4	-1	reviewed	p.P623H	0.989	23	0%	17	23.5%	63	20.6%	unknown(0)	tolerated(0.12)	-	HMMPfam_Collagen
RAB20	55647	genome.wustl.edu	37	13	111176269	111176269	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017817.1	-1	provisional	p.Q150*	0.000	104	0%	70	25.7%	53	32%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAB20	55647	genome.wustl.edu	37	13	111213850	111213850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017817.1	-1	provisional	p.S6N	0.994	22	0%	23	21.7%	13	46.1%	benign(0.03)	tolerated(0.09)	neutral(0.298)	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases
ING1	3621	genome.wustl.edu	37	13	111371784	111371784	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005537.3	+1	reviewed	p.A258	0.003	31	0%	24	33.3%	26	61.5%	-	-	-	NULL
ING1	3621	genome.wustl.edu	37	13	111372144	111372144	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005537.3	+1	reviewed	p.W378*	1.000	84	0%	104	24%	44	45.4%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
ARHGEF7	8874	genome.wustl.edu	37	13	111932971	111932971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113511.1	+1	reviewed	p.V579I	1.000	182	0%	132	19.7%	12	50%	benign(0.004)	tolerated(0.49)	neutral(0.011)	HMMSmart_SM00233
ARHGEF7	8874	genome.wustl.edu	37	13	111955337	111955337	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113513.1	+1	reviewed	e17-1	1.000	224	0%	161	23%	0	-	-	-	-	-
C13orf35	400165	genome.wustl.edu	37	13	113337690	113337690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207440.1	+1	provisional	p.R121Q	0.010	416	0.2%	464	14.7%	0	-	unknown(0)	-	-	NULL
ATP11A	23250	genome.wustl.edu	37	13	113488933	113488933	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000418678	+1	known	p.T505I	1.000	270	0%	215	19.5%	5	80%	-	-	-	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
MCF2L	23263	genome.wustl.edu	37	13	113714950	113714950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001112732.1	+1	validated	p.P195L	1.000	120	0%	137	25.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00516
MCF2L	23263	genome.wustl.edu	37	13	113729374	113729374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001112732.1	+1	validated	p.H450Q	1.000	42	0%	69	14.5%	5	20%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MCF2L	23263	genome.wustl.edu	37	13	113730316	113730316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001112732.1	+1	validated	p.A506S	1.000	129	0%	114	34.2%	5	60%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Spectrin repeat
MCF2L	23263	genome.wustl.edu	37	13	113742891	113742891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001112732.1	+1	validated	p.R985Q	0.218	40	0%	35	20%	10	30%	possibly_damaging(0.753)	tolerated(0.35)	neutral(0.297)	superfamily_PH domain-like
MCF2L	23263	genome.wustl.edu	37	13	113748871	113748871	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000397017	+1	known	p.R685W	0.315	106	0.9%	186	28.5%	12	41.6%	-	-	-	NULL
F10	2159	genome.wustl.edu	37	13	113795349	113795349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000504.3	+1	reviewed	p.A163T	0.957	45	0%	43	32.6%	1	0%	benign(0.066)	tolerated(0.11)	neutral(0.276)	HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
PCID2	55795	genome.wustl.edu	37	13	113838700	113838700	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127202.1	-1	validated	p.Y215	0.764	585	0%	547	17.4%	34	38.2%	-	-	-	HMMSmart_SM00753
LAMP1	3916	genome.wustl.edu	37	13	113973965	113973965	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005561.3	+1	reviewed	p.D248	0.105	53	0%	41	29.3%	280	34.6%	-	-	-	HMMPfam_Lamp
TMCO3	55002	genome.wustl.edu	37	13	114149957	114149957	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017905.4	+1	validated	p.Q21*	0.000	96	0%	135	20%	9	22.2%	-	-	-	NULL
GRK1	6011	genome.wustl.edu	37	13	114322111	114322111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000335678	+1	known	p.G137E	0.032	109	0%	145	21.4%	0	-	benign(0.255)	tolerated(0.26)	neutral(0.060)	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
GRK1	6011	genome.wustl.edu	37	13	114322340	114322340	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000335678	+1	known	p.G213	1.000	52	0%	84	25%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
GRK1	6011	genome.wustl.edu	37	13	114436018	114436018	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000335678	+1	known	p.H452	0.002	67	0%	95	18.9%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GAS6	2621	genome.wustl.edu	37	13	114541145	114541145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000820.2	-1	reviewed	p.Q162H	0.000	88	0%	96	20.8%	18	0%	benign(0)	tolerated(0.14)	neutral(0.249)	HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_CA,superfamily_SSF57196
GAS6	2621	genome.wustl.edu	37	13	114566591	114566591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000820.2	-1	reviewed	p.S71I	0.975	17	0%	17	23.5%	6	0%	possibly_damaging(0.49)	deleterious(0)	deleterious(0.608)	HMMPfam_Gla,HMMSmart_GLA,PatternScan_GLA_1,superfamily_VitK_dep_GLA
CDC16	8881	genome.wustl.edu	37	13	115030701	115030701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001078645.1	+1	reviewed	p.S530F	1.000	794	0%	414	22.2%	100	27%	benign(0.3)	deleterious(0)	deleterious(0.537)	NULL
UPF3A	65110	genome.wustl.edu	37	13	115067459	115067459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023011.2	+1	reviewed	p.D421N	0.967	104	0%	71	14.1%	11	18.1%	possibly_damaging(0.512)	deleterious(0.02)	deleterious(0.555)	NULL
CHAMP1	283489	genome.wustl.edu	37	13	115091732	115091732	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032436.2	+1	validated	p.P805	0.001	118	0%	65	18.5%	18	61.1%	-	-	-	NULL
OR11H12	440153	genome.wustl.edu	37	14	19377747	19377747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013354.1	+1	provisional	p.L52M	0.016	678	0%	274	14.2%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	superfamily_SSF81321
OR11H12	440153	genome.wustl.edu	37	14	19378198	19378198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013354.1	+1	provisional	p.L202S	0.019	1099	0.1%	312	16%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR11H12	440153	genome.wustl.edu	37	14	19378255	19378255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013354.1	+1	provisional	p.V221A	0.004	946	0%	252	13.5%	0	-	benign(0.053)	deleterious(0.01)	neutral(0.409)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000226518	0	genome.wustl.edu	37	14	20085483	20085483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000422907	+1	known	p.V29I	1.000	120	0%	73	15.1%	0	-	-	-	-	NULL
OR4Q3	441669	genome.wustl.edu	37	14	20215762	20215762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172194.1	+1	provisional	p.P59H	1.000	382	0%	122	19.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR4K5	79317	genome.wustl.edu	37	14	20389592	20389592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005483.1	+1	provisional	p.T276N	0.016	505	0%	142	28.2%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_7tm_1,superfamily_SSF81321
OR4K1	79544	genome.wustl.edu	37	14	20404190	20404190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004063.2	+1	validated	p.R122I	1.000	347	0.3%	178	9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR4L1	122742	genome.wustl.edu	37	14	20528637	20528637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004717.1	+1	provisional	p.A145V	0.027	240	0%	80	13.8%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR11H4	390442	genome.wustl.edu	37	14	20711264	20711264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004479.1	+1	provisional	p.S105Y	0.005	247	0%	171	28.7%	0	-	benign(0.005)	deleterious(0.04)	neutral(0.349)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCNB1IP1	57820	genome.wustl.edu	37	14	20781832	20781832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021178.3	-1	validated	p.E142D	1.000	333	0%	420	12.6%	67	38.8%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
PARP2	10038	genome.wustl.edu	37	14	20825639	20825639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005484.3	+1	reviewed	p.L518M	0.649	167	0%	112	33%	85	55.2%	benign(0.01)	tolerated(0.07)	neutral(0.320)	HMMPfam_PARP,superfamily_ADP-ribosylation
TEP1	7011	genome.wustl.edu	37	14	20854288	20854288	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007110.4	-1	reviewed	p.R976	1.000	144	0%	114	14.9%	2	0%	-	-	-	NULL
KLHL33	123103	genome.wustl.edu	37	14	20898744	20898744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000344581	-1	known	p.A31T	1.000	74	0%	84	33.3%	0	-	possibly_damaging(0.83)	tolerated(0.38)	neutral(0.333)	superfamily_BTB/POZ_fold
APEX1	328	genome.wustl.edu	37	14	20924080	20924080	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001641.2	+1	reviewed	p.E22	0.597	105	0%	139	18.7%	195	23%	unknown(0)	-	-	NULL
APEX1	328	genome.wustl.edu	37	14	20924970	20924970	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000438886	+1	known	p.A80V	0.978	60	0%	101	26.7%	281	41.9%	-	-	-	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
APEX1	328	genome.wustl.edu	37	14	20925229	20925229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000438886	+1	known	p.L100P	0.996	192	0%	269	17.8%	400	41.2%	-	-	-	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
TMEM55B	90809	genome.wustl.edu	37	14	20926730	20926730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001100814.1	-1	validated	p.Q281H	1.000	152	0%	168	25%	39	38.4%	benign(0.004)	tolerated(1)	-	NULL
RNASE11	122651	genome.wustl.edu	37	14	21052556	21052556	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145250.3	-1	validated	p.I26	0.014	462	0%	245	25.3%	0	-	-	-	-	NULL
METTL17	64745	genome.wustl.edu	37	14	21458435	21458435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001029991.1	+1	validated	p.S41F	0.000	90	0%	64	21.9%	14	42.8%	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
RNASE8	122665	genome.wustl.edu	37	14	21526157	21526157	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138331.1	+1	provisional	p.Q36*	0.729	384	0%	171	24.6%	0	-	-	-	-	HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like
ARHGEF40	55701	genome.wustl.edu	37	14	21542423	21542423	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018071.3	+1	validated	p.W178*	1.000	44	0%	80	27.5%	5	60%	-	-	-	NULL
ARHGEF40	55701	genome.wustl.edu	37	14	21552988	21552988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018071.3	+1	validated	p.R1289H	1.000	225	0%	309	21.7%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00233,superfamily_PH domain-like
ARHGEF40	55701	genome.wustl.edu	37	14	21555549	21555549	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018071.3	+1	validated	p.S1438	0.449	68	0%	77	19.5%	15	26.6%	-	-	-	NULL
RPGRIP1	57096	genome.wustl.edu	37	14	21819295	21819295	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020366.3	+1	reviewed	p.G1261*	1.000	334	0%	128	25.8%	1	100%	-	-	-	NULL
CHD8	57680	genome.wustl.edu	37	14	21853930	21853930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020920.3	-1	reviewed	p.R2251W	0.985	172	0%	125	15.2%	76	19.7%	unknown(0)	deleterious(0)	-	NULL
CHD8	57680	genome.wustl.edu	37	14	21861298	21861298	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020920.3	-1	reviewed	p.L1866	0.998	379	0.3%	229	19.7%	51	41.1%	-	-	-	NULL
CHD8	57680	genome.wustl.edu	37	14	21862322	21862322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020920.3	-1	reviewed	p.I1599V	1.000	123	0%	59	11.9%	28	25%	probably_damaging(0.965)	deleterious(0.05)	deleterious(0.752)	NULL
CHD8	57680	genome.wustl.edu	37	14	21870246	21870246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020920.3	-1	reviewed	p.A1032V	1.000	401	0%	161	21.1%	7	42.8%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD8	57680	genome.wustl.edu	37	14	21878098	21878098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020920.3	-1	reviewed	p.S480N	1.000	404	0%	151	19.9%	5	40%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_P-loop containing nucleoside triphosphate hydrolases
SALL2	6297	genome.wustl.edu	37	14	21991674	21991674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005407.1	-1	validated	p.G730R	0.993	101	0%	68	11.8%	5	0%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	NULL
SALL2	6297	genome.wustl.edu	37	14	21992496	21992496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005407.1	-1	validated	p.V456M	0.799	47	0%	43	14%	6	16.6%	possibly_damaging(0.868)	deleterious(0.01)	deleterious(0.743)	NULL
OR10G3	26533	genome.wustl.edu	37	14	22038440	22038440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005465.1	-1	validated	p.V146M	0.805	184	0%	82	19.5%	0	-	possibly_damaging(0.594)	deleterious(0.02)	deleterious(0.588)	HMMPfam_7tm_1,superfamily_SSF81321
MRPL52	122704	genome.wustl.edu	37	14	23303404	23303404	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181307.2	+1	reviewed	p.G61*	1.000	211	0%	179	18.4%	348	46.2%	-	-	-	NULL
RBM23	55147	genome.wustl.edu	37	14	23371498	23371498	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077351.1	-1	reviewed	p.R342*	0.945	208	0%	106	22.6%	41	7.3%	-	-	-	superfamily_RNA-binding domain RBD
RBM23	55147	genome.wustl.edu	37	14	23374221	23374221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077351.1	-1	reviewed	p.A243S	1.000	186	0%	103	22.3%	35	22.8%	benign(0.117)	tolerated(0.06)	neutral(0.332)	superfamily_RNA-binding domain RBD
RBM23	55147	genome.wustl.edu	37	14	23378770	23378770	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077351.1	-1	reviewed	p.Y34F	0.015	1060	0%	488	14.3%	15	20%	unknown(0)	tolerated(0.66)	-	NULL
C14orf93	60686	genome.wustl.edu	37	14	23465239	23465239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130706.1	-1	validated	p.S279Y	0.996	185	0.5%	182	26.9%	6	0%	probably_damaging(0.981)	tolerated(0.14)	deleterious(0.675)	NULL
ACIN1	22985	genome.wustl.edu	37	14	23540693	23540693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000338631	-1	known	p.S20N	1.000	102	0%	83	32.5%	15	40%	benign(0.202)	tolerated(0.06)	neutral(0.342)	NULL
C14orf119	55017	genome.wustl.edu	37	14	23567180	23567180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017924.2	+1	predicted	p.G105C	1.000	352	0%	301	14.3%	126	23%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
SLC7A8	23428	genome.wustl.edu	37	14	23600702	23600702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012244.2	-1	validated	p.R361C	1.000	305	0%	150	23.3%	5	0%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_AA_permease
HOMEZ	57594	genome.wustl.edu	37	14	23745810	23745810	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020834.2	-1	validated	p.G209	0.962	133	0%	94	22.3%	17	35.2%	-	-	-	NULL
MYH6	4624	genome.wustl.edu	37	14	23855527	23855527	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002471.3	-1	validated	p.L1652	0.999	307	0%	261	23%	0	-	-	-	-	HMMPfam_Myosin_tail_1
MYH7	4625	genome.wustl.edu	37	14	23886884	23886884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000257.2	-1	reviewed	p.A1394V	1.000	113	0%	120	26.7%	0	-	benign(0.006)	tolerated(0.29)	neutral(0.029)	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
MYH7	4625	genome.wustl.edu	37	14	23887427	23887427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000257.2	-1	reviewed	p.E1387D	1.000	107	0%	93	11.8%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
NGDN	25983	genome.wustl.edu	37	14	23944458	23944458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042635.1	+1	validated	p.A75S	1.000	422	0%	157	15.3%	48	43.7%	benign(0.026)	tolerated(0.11)	neutral(0.273)	HMMPfam_Sas10_Utp3
NGDN	25983	genome.wustl.edu	37	14	23945537	23945537	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042635.1	+1	validated	p.Q212*	1.000	163	0%	78	12.8%	102	0%	-	-	-	NULL
AP1G2	8906	genome.wustl.edu	37	14	24032946	24032946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003917.2	-1	reviewed	p.G404D	1.000	109	0%	98	15.3%	78	41%	probably_damaging(0.983)	tolerated(0.12)	deleterious(0.690)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
JPH4	84502	genome.wustl.edu	37	14	24040430	24040430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032452.2	-1	reviewed	p.A504T	0.051	27	0%	27	33.3%	3	0%	benign(0.164)	tolerated(0.43)	neutral(0.028)	NULL
DHRS4L2	317749	genome.wustl.edu	37	14	24459396	24459396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198083.2	+1	validated	p.G45D	1.000	120	0%	107	29.9%	32	34.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
LRRC16B	90668	genome.wustl.edu	37	14	24523004	24523004	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138360.3	+1	validated	p.R43*	1.000	91	0%	94	26.6%	0	-	-	-	-	NULL
PCK2	5106	genome.wustl.edu	37	14	24567684	24567684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004563.2	+1	reviewed	p.G154V	1.000	87	0%	88	20.5%	51	13.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PEPCK,superfamily_PEP carboxykinase N-terminal domain
DCAF11	80344	genome.wustl.edu	37	14	24588955	24588955	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025230.4	+1	reviewed	p.A314	1.000	431	0%	349	20.6%	98	33.6%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
PSME2	5721	genome.wustl.edu	37	14	24615432	24615432	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002818.2	-1	reviewed	p.Q22	0.972	308	0%	445	21.1%	1060	41.1%	-	-	-	HMMPfam_PA28_alpha,superfamily_Prot_act_regA
RNF31	55072	genome.wustl.edu	37	14	24619330	24619330	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017999.4	+1	validated	p.S290	0.314	150	0%	220	11.4%	14	21.4%	-	-	-	superfamily_Znf265 first zinc-finger domain
RNF31	55072	genome.wustl.edu	37	14	24627352	24627352	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017999.4	+1	validated	p.D948V	1.000	212	0%	199	19.6%	71	40.8%	benign(0.023)	deleterious(0.04)	neutral(0.350)	NULL
RNF31	55072	genome.wustl.edu	37	14	24629074	24629074	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017999.4	+1	validated	p.G967	0.983	71	0%	82	13.4%	64	21.8%	-	-	-	NULL
TM9SF1	10548	genome.wustl.edu	37	14	24658946	24658946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006405.5	-1	validated	p.G499V	1.000	95	0%	113	23.9%	102	47%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_EMP70
MDP1	145553	genome.wustl.edu	37	14	24683309	24683309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138476.2	-1	provisional	p.S151N	1.000	147	0%	132	18.2%	32	37.5%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
TINF2	26277	genome.wustl.edu	37	14	24710323	24710323	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099274.1	-1	reviewed	e5-1	1.000	225	0%	188	16.5%	1	100%	-	-	-	-
RABGGTA	5875	genome.wustl.edu	37	14	24737768	24737768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004581.3	-1	validated	p.V320I	0.995	172	0%	209	20.1%	50	28%	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_RabGGT_insert,superfamily_RabGG_trans_A,superfamily_Prenyl_trans
CIDEB	27141	genome.wustl.edu	37	14	24776697	24776697	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014430.2	-1	validated	p.E22D	0.918	129	0%	191	15.2%	34	14.7%	benign(0)	tolerated(0.47)	neutral(0.011)	superfamily_CAD  PB1 domains
LTB4R2	56413	genome.wustl.edu	37	14	24780942	24780942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019839.4	+1	validated	p.L389I	0.000	70	0%	115	27%	6	16.6%	unknown(0)	-	-	NULL
LTB4R	1241	genome.wustl.edu	37	14	24785007	24785007	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143919.2	+1	validated	p.R50	1.000	267	0%	408	21.8%	15	26.6%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ADCY4	196883	genome.wustl.edu	37	14	24791835	24791835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139247.2	-1	reviewed	p.R808C	1.000	237	0%	214	24.8%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADCY4	196883	genome.wustl.edu	37	14	24800461	24800461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139247.2	-1	reviewed	p.S257R	1.000	141	0%	161	24.2%	1	0%	benign(0.002)	tolerated(0.73)	neutral(0.002)	HMMSmart_SM00044
NYNRIN	57523	genome.wustl.edu	37	14	24878409	24878409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025081.2	+1	validated	p.D470G	0.023	61	0%	67	16.4%	1	0%	possibly_damaging(0.494)	deleterious(0)	deleterious(0.609)	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24879270	24879270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025081.2	+1	validated	p.R757H	0.001	27	0%	39	30.8%	2	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24884042	24884042	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025081.2	+1	validated	p.V1029	0.001	207	0%	181	11.6%	6	0%	-	-	-	NULL
KHNYN	23351	genome.wustl.edu	37	14	24901204	24901204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015299.2	+1	validated	p.R246M	0.000	329	0%	299	20.4%	4	0%	possibly_damaging(0.496)	deleterious(0.01)	deleterious(0.571)	NULL
GZMH	2999	genome.wustl.edu	37	14	25076579	25076579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033423.3	-1	provisional	p.R125W	0.000	126	0%	69	29%	78	0%	benign(0.031)	deleterious(0.02)	neutral(0.385)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
NOVA1	4857	genome.wustl.edu	37	14	26917972	26917972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002515.2	-1	reviewed	p.Q239H	1.000	442	0%	282	22.3%	0	-	unknown(0)	tolerated(0.25)	-	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)
NOVA1	4857	genome.wustl.edu	37	14	26949216	26949216	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002515.2	-1	reviewed	p.P138	0.986	497	0%	291	18.9%	2	0%	-	-	-	NULL
SCFD1	23256	genome.wustl.edu	37	14	31164035	31164035	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016106.2	+1	validated	p.T433	1.000	219	0%	225	28.4%	37	45.9%	-	-	-	HMMPfam_Sec1,superfamily_Sec1-like
COCH	1690	genome.wustl.edu	37	14	31354605	31354605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135058.1	+1	reviewed	p.A247T	1.000	356	0%	204	22.5%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
STRN3	29966	genome.wustl.edu	37	14	31364898	31364898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083893.1	-1	validated	p.D732Y	1.000	258	0%	125	22.4%	11	9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
STRN3	29966	genome.wustl.edu	37	14	31381333	31381333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083893.1	-1	validated	p.R477H	1.000	204	0%	105	17.1%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
STRN3	29966	genome.wustl.edu	37	14	31405831	31405831	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083893.1	-1	validated	e6-1	1.000	474	0%	126	24.6%	0	-	-	-	-	-
HEATR5A	25938	genome.wustl.edu	37	14	31762718	31762718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015473.2	-1	validated	p.D1685E	1.000	324	0%	105	13.3%	6	16.6%	benign(0.012)	tolerated(1)	neutral(0.001)	superfamily_ARM repeat
HEATR5A	25938	genome.wustl.edu	37	14	31762742	31762742	+	Silent	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015473.2	-1	validated	p.T1677	0.256	285	0%	92	20.7%	7	42.8%	-	-	-	superfamily_ARM repeat
HEATR5A	25938	genome.wustl.edu	37	14	31814361	31814361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015473.2	-1	validated	p.A704V	1.000	383	0%	120	10.8%	1	0%	benign(0)	tolerated(1)	-	superfamily_ARM repeat
ARHGAP5	394	genome.wustl.edu	37	14	32560011	32560011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001030055.1	+1	reviewed	p.A46T	1.000	267	0%	155	17.4%	2	50%	probably_damaging(0.978)	tolerated(0.1)	deleterious(0.707)	HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARHGAP5	394	genome.wustl.edu	37	14	32562181	32562181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001030055.1	+1	reviewed	p.A769V	1.000	178	0%	82	24.4%	3	0%	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
AKAP6	9472	genome.wustl.edu	37	14	33014710	33014710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004274.4	+1	reviewed	p.T284I	0.895	180	0%	47	14.9%	1	0%	benign(0.011)	deleterious(0)	neutral(0.445)	NULL
EGLN3	112399	genome.wustl.edu	37	14	34419695	34419695	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022073.3	-1	validated	p.C88	1.000	19	0%	13	30.8%	4	50%	-	-	-	HMMSmart_P4Hc
SNX6	58533	genome.wustl.edu	37	14	35045036	35045036	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152233.2	-1	reviewed	p.R295*	1.000	206	1%	156	17.9%	38	2.6%	-	-	-	HMMPfam_Vps5
BAZ1A	11177	genome.wustl.edu	37	14	35233938	35233938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013448.2	-1	validated	p.D1251N	1.000	930	0%	298	20.1%	30	36.6%	possibly_damaging(0.465)	deleterious(0.02)	deleterious(0.536)	NULL
BAZ1A	11177	genome.wustl.edu	37	14	35245491	35245491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013448.2	-1	validated	p.L823F	1.000	282	0%	191	24.6%	13	69.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
BAZ1A	11177	genome.wustl.edu	37	14	35331481	35331481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013448.2	-1	validated	p.C54Y	1.000	261	0%	158	23.4%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_WAC_Acf1_DNA_bd
SRP54	6729	genome.wustl.edu	37	14	35497369	35497369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003136.3	+1	validated	p.P468L	1.000	372	0%	259	13.9%	136	42.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PPP2R3C	55012	genome.wustl.edu	37	14	35557156	35557156	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017917.2	-1	provisional	e12+1	1.000	322	0%	260	18.1%	2	100%	-	-	-	-
PPP2R3C	55012	genome.wustl.edu	37	14	35579040	35579040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017917.2	-1	provisional	p.A130D	1.000	360	0%	184	21.7%	12	58.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_EF-hand
SSTR1	6751	genome.wustl.edu	37	14	38679200	38679200	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001049.2	+1	reviewed	p.S202	1.000	83	0%	113	23%	2	50%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
PNN	5411	genome.wustl.edu	37	14	39649941	39649941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002687.3	+1	validated	p.A343V	0.526	801	0%	372	26.6%	42	28.5%	benign(0.014)	tolerated(0.35)	neutral(0.021)	NULL
CTAGE5	4253	genome.wustl.edu	37	14	39796110	39796110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005930.3	+1	validated	p.N572S	0.415	651	0%	268	19.4%	48	60.4%	benign(0.137)	deleterious(0.03)	neutral(0.376)	NULL
CTAGE5	4253	genome.wustl.edu	37	14	39815153	39815153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005930.3	+1	validated	p.R626K	1.000	408	0%	148	27%	41	48.7%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
FSCB	84075	genome.wustl.edu	37	14	44975258	44975258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032135.3	-1	validated	p.E311D	0.002	124	0%	90	17.8%	0	-	benign(0.176)	tolerated(0.08)	neutral(0.316)	NULL
FSCB	84075	genome.wustl.edu	37	14	44975794	44975794	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032135.3	-1	validated	p.Q133*	1.000	302	0%	222	22.5%	0	-	-	-	-	NULL
KLHL28	54813	genome.wustl.edu	37	14	45403648	45403648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017658.3	-1	validated	p.G338V	1.000	263	0%	129	17.1%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
PRPF39	55015	genome.wustl.edu	37	14	45579387	45579387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017922.3	+1	validated	p.V423M	1.000	373	0%	126	18.3%	2	0%	possibly_damaging(0.77)	tolerated(0.17)	neutral(0.345)	HMMSmart_SM00386,superfamily_TPR-like
FANCM	57697	genome.wustl.edu	37	14	45605488	45605488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020937.2	+1	reviewed	p.Y85C	1.000	97	0%	101	26.7%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MIS18BP1	55320	genome.wustl.edu	37	14	45701952	45701952	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018353.4	-1	validated	p.F474V	1.000	92	0%	99	12.1%	8	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_SANTA
RPL10L	140801	genome.wustl.edu	37	14	47120325	47120325	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080746.2	-1	reviewed	p.P205	0.807	91	0%	140	16.4%	0	-	-	-	-	NULL
MDGA2	161357	genome.wustl.edu	37	14	47311202	47311202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113498.1	-1	validated	p.G935R	1.000	330	0%	160	15.6%	0	-	probably_damaging(0.964)	tolerated(0.08)	deleterious(0.706)	NULL
RPL36AL	6166	genome.wustl.edu	37	14	50085520	50085520	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001.3	-1	reviewed	p.G101	1.000	99	0%	95	29.5%	393	31.2%	-	-	-	NULL
ARF6	382	genome.wustl.edu	37	14	50360869	50360869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001663.3	+1	reviewed	p.L139M	1.000	90	0%	105	11.4%	275	23.2%	benign(0.006)	deleterious(0.02)	neutral(0.383)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
SOS2	6655	genome.wustl.edu	37	14	50585201	50585201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006939.2	-1	validated	p.P1287H	1.000	315	0%	323	13.6%	11	45.4%	benign(0.026)	deleterious(0.04)	neutral(0.350)	NULL
SOS2	6655	genome.wustl.edu	37	14	50628286	50628286	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006939.2	-1	validated	p.C370W	1.000	600	0%	146	24.7%	4	50%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
NIN	51199	genome.wustl.edu	37	14	51192748	51192748	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020921.3	-1	reviewed	p.R2039*	1.000	639	0%	223	22.4%	7	28.5%	-	-	-	NULL
NIN	51199	genome.wustl.edu	37	14	51202294	51202294	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020921.3	-1	reviewed	p.I1939M	1.000	482	0%	189	18.5%	8	25%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NIN	51199	genome.wustl.edu	37	14	51214742	51214742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020921.3	-1	reviewed	p.L1678F	1.000	569	0%	225	17.3%	11	27.2%	possibly_damaging(0.938)	tolerated(0.58)	neutral(0.389)	NULL
ABHD12B	145447	genome.wustl.edu	37	14	51352582	51352582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181814.1	+1	validated	p.V134M	0.994	331	0.3%	135	27.4%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
TRIM9	114088	genome.wustl.edu	37	14	51448589	51448589	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015163.5	-1	reviewed	p.D612	1.000	395	0%	196	20.9%	0	-	-	-	-	HMMPfam_SPRY,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00449
FRMD6	122786	genome.wustl.edu	37	14	52171481	52171481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042481.1	+1	validated	p.R121I	1.000	89	0%	46	19.6%	0	-	possibly_damaging(0.461)	deleterious(0.01)	deleterious(0.556)	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
NID2	22795	genome.wustl.edu	37	14	52477702	52477702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007361.3	-1	validated	p.S1205I	0.997	188	0%	155	27.1%	6	0%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
NID2	22795	genome.wustl.edu	37	14	52481023	52481023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007361.3	-1	validated	p.K1134N	1.000	184	0%	112	22.3%	2	0%	benign(0.005)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00135,superfamily_YWTD domain
NID2	22795	genome.wustl.edu	37	14	52485963	52485963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007361.3	-1	validated	p.Q948H	0.163	93	0%	51	13.7%	4	0%	benign(0.006)	tolerated(0.14)	neutral(0.249)	HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin type-1 domain
NID2	22795	genome.wustl.edu	37	14	52526962	52526962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007361.3	-1	validated	p.N216S	0.997	88	0%	68	13.2%	0	-	benign(0.183)	tolerated(0.09)	neutral(0.314)	HMMPfam_NIDO,HMMSmart_SM00539
PTGER2	5732	genome.wustl.edu	37	14	52794090	52794090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000956.3	+1	reviewed	p.C332Y	1.000	271	0%	201	19.4%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_SSF81321
TXNDC16	57544	genome.wustl.edu	37	14	52906051	52906051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020784.2	-1	validated	p.P689T	1.000	414	0%	179	26.3%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR137C	283554	genome.wustl.edu	37	14	53066897	53066897	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099652.1	+1	provisional	p.A185	0.672	665	0%	233	18.9%	0	-	-	-	-	NULL
BMP4	652	genome.wustl.edu	37	14	54417223	54417223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001202.3	-1	reviewed	p.V252I	1.000	54	0%	84	26.2%	5	0%	possibly_damaging(0.6)	deleterious(0.01)	deleterious(0.613)	HMMPfam_TGFb_propeptide
CNIH	10175	genome.wustl.edu	37	14	54897100	54897100	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005776.2	-1	validated	p.S96R	1.000	371	0%	217	17.5%	92	45.6%	possibly_damaging(0.922)	deleterious(0.05)	deleterious(0.717)	HMMPfam_Cornichon
CNIH	10175	genome.wustl.edu	37	14	54898924	54898924	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005776.2	-1	validated	p.E55	1.000	136	0%	116	23.3%	115	42.6%	-	-	-	HMMPfam_Cornichon
CGRRF1	10668	genome.wustl.edu	37	14	54989273	54989273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006568.2	+1	validated	p.G69D	1.000	487	0%	313	18.8%	8	37.5%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
WDHD1	11169	genome.wustl.edu	37	14	55429243	55429243	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007086.2	-1	reviewed	p.N892H	0.000	153	0%	88	25%	17	29.4%	benign(0.008)	tolerated(0.12)	neutral(0.261)	superfamily_WD40_like
FBXO34	55030	genome.wustl.edu	37	14	55817874	55817874	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017943.3	+1	validated	p.G256*	0.988	169	0%	55	30.9%	11	36.3%	-	-	-	NULL
FBXO34	55030	genome.wustl.edu	37	14	55818613	55818613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017943.3	+1	validated	p.T502I	0.000	169	0%	44	22.7%	10	20%	benign(0.024)	tolerated(0.08)	neutral(0.301)	NULL
ATG14	22863	genome.wustl.edu	37	14	55852658	55852658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014924.3	-1	provisional	p.R189H	0.023	407	0%	152	28.9%	5	60%	benign(0.009)	tolerated(0.19)	neutral(0.050)	HMMPfam_DUF2355
KTN1	3895	genome.wustl.edu	37	14	56104043	56104043	+	Missense_Mutation	SNP	A	A	C	rs189818578	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001079521.1	+1	validated	p.K559N	1.000	313	0%	91	20.9%	29	41.3%	benign(0.133)	tolerated(0.2)	neutral(0.060)	NULL
PELI2	57161	genome.wustl.edu	37	14	56763543	56763543	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021255.2	+1	validated	p.W308G	1.000	80	0%	52	28.8%	5	40%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Pellino
EXOC5	10640	genome.wustl.edu	37	14	57713452	57713452	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006544.3	-1	reviewed	p.Q83*	1.000	497	0%	201	22.9%	5	0%	-	-	-	NULL
C14orf37	145407	genome.wustl.edu	37	14	58604908	58604908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001872.2	-1	predicted	p.P390H	0.037	155	0%	131	25.2%	6	66.6%	benign(0.269)	deleterious(0.05)	neutral(0.374)	NULL
ACTR10	55860	genome.wustl.edu	37	14	58697184	58697184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018477.2	+1	validated	p.D286N	1.000	151	0%	128	24.2%	42	28.5%	probably_damaging(1)	tolerated(0.35)	deleterious(0.520)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
ACTR10	55860	genome.wustl.edu	37	14	58701127	58701127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018477.2	+1	validated	p.R371H	1.000	310	0%	193	24.4%	81	59.2%	possibly_damaging(0.912)	tolerated(0.1)	deleterious(0.650)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
DAAM1	23002	genome.wustl.edu	37	14	59730206	59730206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014992.1	+1	reviewed	p.R4K	1.000	275	0%	146	19.9%	1	0%	unknown(0)	tolerated(0.15)	-	NULL
C14orf135	64430	genome.wustl.edu	37	14	60585324	60585324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022495.5	+1	validated	p.C385Y	0.997	234	0%	79	21.5%	12	25%	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	NULL
DHRS7	51635	genome.wustl.edu	37	14	60616078	60616078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016029.2	-1	validated	p.S322I	0.986	431	0%	172	22.1%	87	32.1%	benign(0.15)	tolerated(0.1)	neutral(0.299)	NULL
SIX1	6495	genome.wustl.edu	37	14	61115495	61115495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005982.3	-1	reviewed	p.V138A	1.000	63	0%	72	22.2%	7	71.4%	benign(0.023)	tolerated(0.6)	neutral(0.005)	HMMSmart_SM00389,superfamily_Homeodomain-like
PRKCH	5583	genome.wustl.edu	37	14	61952245	61952245	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006255.3	+1	reviewed	p.F435S	1.000	510	0%	357	25.2%	10	10%	possibly_damaging(0.803)	deleterious(0)	deleterious(0.747)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SYT16	83851	genome.wustl.edu	37	14	62547684	62547684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031914.2	+1	validated	p.G376S	1.000	121	0%	68	11.8%	0	-	benign(0.024)	deleterious(0.04)	neutral(0.350)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
KCNH5	27133	genome.wustl.edu	37	14	63174624	63174624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139318.3	-1	reviewed	p.P857T	1.000	508	0%	517	20.9%	0	-	benign(0.028)	tolerated(0.22)	neutral(0.044)	NULL
KCNH5	27133	genome.wustl.edu	37	14	63174949	63174949	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139318.3	-1	reviewed	p.T748	0.004	232	0%	206	12.6%	0	-	-	-	-	NULL
PPP2R5E	5529	genome.wustl.edu	37	14	63851195	63851195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006246.2	-1	reviewed	p.S390I	1.000	331	0%	147	27.9%	22	31.8%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_B56,superfamily_ARM repeat
PPP2R5E	5529	genome.wustl.edu	37	14	64006376	64006376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006246.2	-1	reviewed	p.S10P	1.000	312	0%	383	20.6%	5	60%	benign(0.001)	tolerated(0.77)	neutral(0.001)	NULL
SYNE2	23224	genome.wustl.edu	37	14	64457780	64457780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182914.2	+1	reviewed	p.Q865K	0.992	161	0%	75	13.3%	1	0%	benign(0.125)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64599119	64599119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182914.2	+1	reviewed	p.S4826L	0.075	248	0%	109	19.3%	5	40%	unknown(0)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64679609	64679609	+	Silent	SNP	C	C	T	rs146572710	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182914.2	+1	reviewed	p.S6314	0.957	184	0%	128	27.3%	60	51.6%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
AKAP5	9495	genome.wustl.edu	37	14	64935975	64935975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004857.3	+1	reviewed	p.A288E	0.000	122	0%	149	12.1%	3	33.3%	benign(0.324)	tolerated(0.71)	neutral(0.103)	NULL
HSPA2	3306	genome.wustl.edu	37	14	65008761	65008761	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021979.3	+1	validated	p.D398	1.000	31	0%	30	23.3%	15	20%	-	-	-	HMMPfam_HSP70,superfamily_SSF100920
ENSG00000249603	0	genome.wustl.edu	37	14	65067073	65067073	+	RNA	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000509438	+1	novel	NULL	1.000	313	0%	351	27.9%	0	-	-	-	-	-
ENSG00000249603	0	genome.wustl.edu	37	14	65067541	65067541	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000509438	+1	novel	NULL	1.000	254	0%	392	24%	0	-	-	-	-	-
ENSG00000238163	0	genome.wustl.edu	37	14	65067935	65067935	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000428403	-1	known	p.S135	0.993	131	0%	190	27.9%	4	0%	-	-	-	HMMPfam_NUP50
PLEKHG3	26030	genome.wustl.edu	37	14	65209864	65209864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015549.1	+1	validated	p.A979T	0.000	17	0%	30	26.7%	27	33.3%	benign(0.06)	deleterious(0)	neutral(0.449)	NULL
SPTB	6710	genome.wustl.edu	37	14	65289820	65289820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000389723	-1	known	p.P2H	1.000	76	0%	48	16.7%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
MAX	4149	genome.wustl.edu	37	14	65544579	65544579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145116.1	-1	reviewed	p.S116L	0.869	212	0%	130	28.5%	1	0%	benign(0.017)	deleterious(0)	neutral(0.445)	NULL
MAX	4149	genome.wustl.edu	37	14	65569033	65569033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002382.3	-1	reviewed	p.V9M	1.000	39	0%	64	25%	43	37.2%	probably_damaging(0.97)	deleterious(0.05)	deleterious(0.758)	NULL
FUT8	2530	genome.wustl.edu	37	14	66200007	66200007	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178154.1	+1	reviewed	p.N440H	1.000	268	0%	138	24.6%	33	42.4%	benign(0.026)	deleterious(0.01)	neutral(0.407)	NULL
PLEKHH1	57475	genome.wustl.edu	37	14	68040525	68040525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020715.2	+1	validated	p.V616A	1.000	220	0%	148	16.2%	1	100%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PLEKHH1	57475	genome.wustl.edu	37	14	68050564	68050564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020715.2	+1	validated	p.R1178M	1.000	61	0%	45	13.3%	3	0%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
VTI1B	10490	genome.wustl.edu	37	14	68123221	68123221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006370.2	-1	validated	p.R151Q	1.000	272	0%	176	20.5%	202	33.6%	benign(0.299)	tolerated(0.13)	neutral(0.345)	HMMSmart_SM00397,HMMPfam_V-SNARE
RDH12	145226	genome.wustl.edu	37	14	68191259	68191259	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152443.2	+1	reviewed	p.G46	0.915	593	0%	260	20.8%	0	-	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
ZFYVE26	23503	genome.wustl.edu	37	14	68215313	68215313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015346.3	-1	reviewed	p.L2487S	1.000	51	0%	19	21.1%	36	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZFYVE26	23503	genome.wustl.edu	37	14	68228122	68228122	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015346.3	-1	reviewed	p.H2183	1.000	449	0%	134	21.6%	15	53.3%	-	-	-	NULL
ZFYVE26	23503	genome.wustl.edu	37	14	68234498	68234498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015346.3	-1	reviewed	p.A1905S	0.999	527	0%	192	14.1%	10	50%	probably_damaging(0.954)	tolerated(0.17)	neutral(0.457)	NULL
ZFYVE26	23503	genome.wustl.edu	37	14	68249851	68249851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015346.3	-1	reviewed	p.R1340S	0.389	78	0%	47	23.4%	2	0%	possibly_damaging(0.858)	tolerated(0.26)	neutral(0.365)	NULL
ZFYVE26	23503	genome.wustl.edu	37	14	68252599	68252599	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015346.3	-1	reviewed	p.L1094	0.998	228	0%	114	21.1%	3	0%	-	-	-	NULL
ENSG00000207089	0	genome.wustl.edu	37	14	69202682	69202682	+	RNA	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000384361	-1	novel	NULL	0.428	195	0%	207	30.4%	0	-	-	-	-	-
ACTN1	87	genome.wustl.edu	37	14	69351509	69351509	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130004.1	-1	reviewed	p.R493*	1.000	152	0%	208	16.8%	66	0%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
ACTN1	87	genome.wustl.edu	37	14	69387726	69387726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130004.1	-1	reviewed	p.E113K	1.000	314	0%	165	19.4%	55	0%	possibly_damaging(0.618)	deleterious(0)	deleterious(0.659)	PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
GALNTL1	57452	genome.wustl.edu	37	14	69787492	69787492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020692.2	+1	validated	p.A81D	0.999	85	0%	100	16%	1	0%	benign(0.427)	tolerated(0.5)	neutral(0.149)	superfamily_Nucleotide-diphospho-sugar transferases
GALNTL1	57452	genome.wustl.edu	37	14	69814693	69814693	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020692.2	+1	validated	p.M505L	0.001	141	0%	75	26.7%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
C14orf162	56936	genome.wustl.edu	37	14	70037811	70037811	+	RNA	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_024630.1	-1	validated	NULL	0.004	133	0%	148	21.6%	0	-	-	-	-	-
SLC10A1	6554	genome.wustl.edu	37	14	70252894	70252894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003049.3	-1	validated	p.L163M	0.379	535	0.2%	258	20.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_SBF
SLC8A3	6547	genome.wustl.edu	37	14	70513020	70513020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183002.1	-1	reviewed	p.A810T	0.970	64	0%	31	29%	0	-	benign(0.426)	deleterious(0)	deleterious(0.583)	HMMPfam_Na_Ca_ex
SLC8A3	6547	genome.wustl.edu	37	14	70515743	70515743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183002.1	-1	reviewed	p.E716D	0.917	152	0.7%	105	11.4%	0	-	possibly_damaging(0.911)	tolerated(0.98)	neutral(0.363)	NULL
SLC8A3	6547	genome.wustl.edu	37	14	70634342	70634342	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183002.1	-1	reviewed	p.R266	0.992	698	0%	231	17.7%	0	-	-	-	-	NULL
SLC8A3	6547	genome.wustl.edu	37	14	70634857	70634857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183002.1	-1	reviewed	p.A95T	1.000	205	0%	65	26.2%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Na_Ca_ex
ENSG00000235812	0	genome.wustl.edu	37	14	70712656	70712656	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000433248	-1	known	p.L404	0.000	373	0%	312	23.7%	0	-	-	-	-	HMMPfam_ADAM_CR,HMMSmart_SM00608
ENSG00000235812	0	genome.wustl.edu	37	14	70712893	70712893	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000433248	-1	known	p.P325	0.936	94	0%	95	17.9%	0	-	-	-	-	HMMPfam_ADAM_CR,HMMSmart_SM00608
ADAM20	8748	genome.wustl.edu	37	14	70989381	70989381	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003814.4	-1	reviewed	p.C748	0.012	649	0%	147	22.4%	0	-	-	-	-	NULL
ADAM20	8748	genome.wustl.edu	37	14	70990775	70990775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003814.4	-1	reviewed	p.V284L	0.000	235	0%	50	22%	0	-	benign(0.067)	tolerated(0.38)	neutral(0.022)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
MAP3K9	4293	genome.wustl.edu	37	14	71205030	71205030	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033141.2	-1	validated	p.P592	0.000	206	0%	190	26.3%	1	100%	-	-	-	NULL
MAP3K9	4293	genome.wustl.edu	37	14	71206811	71206811	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033141.2	-1	validated	p.R546	0.991	428	0%	312	20.5%	1	0%	-	-	-	NULL
MAP3K9	4293	genome.wustl.edu	37	14	71215624	71215624	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033141.2	-1	validated	p.K416	1.000	359	0%	171	22.2%	1	0%	-	-	-	NULL
PCNX	22990	genome.wustl.edu	37	14	71444307	71444307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014982.2	+1	validated	p.E418G	0.996	188	0%	103	15.5%	2	100%	unknown(0)	deleterious(0.04)	-	NULL
PCNX	22990	genome.wustl.edu	37	14	71444498	71444498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014982.2	+1	validated	p.L482F	0.963	79	0%	46	34.8%	3	100%	unknown(0)	tolerated(0.09)	-	NULL
PCNX	22990	genome.wustl.edu	37	14	71492878	71492878	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014982.2	+1	validated	p.C1076	0.998	450	0%	143	27.3%	5	40%	-	-	-	NULL
PCNX	22990	genome.wustl.edu	37	14	71500680	71500680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014982.2	+1	validated	p.T1234M	0.974	86	0%	48	20.8%	3	33.3%	probably_damaging(0.957)	tolerated(0.22)	neutral(0.443)	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72196899	72196899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015556.1	+1	provisional	p.A1602E	0.813	207	0%	110	25.5%	28	46.4%	possibly_damaging(0.701)	deleterious(0.01)	deleterious(0.657)	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72205752	72205752	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015556.1	+1	provisional	p.A1763	1.000	152	0%	92	19.6%	47	42.5%	-	-	-	NULL
RGS6	9628	genome.wustl.edu	37	14	72961965	72961965	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004296.4	+1	validated	p.E320	0.997	694	0%	164	16.5%	0	-	-	-	-	NULL
RBM25	58517	genome.wustl.edu	37	14	73570174	73570174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021239.2	+1	validated	p.R381H	1.000	148	0.7%	70	25.7%	55	40%	unknown(0)	tolerated(0.09)	-	superfamily_RNA-binding domain RBD
PAPLN	89932	genome.wustl.edu	37	14	73739314	73739314	+	Missense_Mutation	SNP	G	G	T	rs11626824	byCluster;byHapMap	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173462.3	+1	validated	p.S1233I	1.000	198	0%	189	24.9%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PLAC
HEATR4	399671	genome.wustl.edu	37	14	73978789	73978789	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203309.1	-1	provisional	p.D446	0.000	340	0%	122	15.6%	0	-	-	-	-	superfamily_ARM-type_fold
ACOT1	641371	genome.wustl.edu	37	14	74009923	74009923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037161.1	+1	validated	p.V277A	0.000	386	0%	310	18.4%	45	22.2%	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_BAAT_C,superfamily_SSF53474
ACOT2	10965	genome.wustl.edu	37	14	74041781	74041781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006821.4	+1	validated	p.V339A	0.000	123	0%	111	15.3%	6	16.6%	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_BAAT_C,superfamily_alpha/beta-Hydrolases
ABCD4	5826	genome.wustl.edu	37	14	74757034	74757034	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005050.3	-1	reviewed	p.S429	0.468	167	0%	116	14.7%	33	18.1%	-	-	-	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
VRTN	55237	genome.wustl.edu	37	14	74823810	74823810	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018228.2	+1	validated	p.T108	0.000	57	0%	37	13.5%	1	0%	-	-	-	NULL
LTBP2	4053	genome.wustl.edu	37	14	74969990	74969990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000428.2	-1	reviewed	p.T1607M	0.999	133	0%	133	12.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TB,superfamily_TB module/8-cys domain
LTBP2	4053	genome.wustl.edu	37	14	74970735	74970735	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000428.2	-1	reviewed	p.F1492	0.372	109	0.9%	116	25%	9	0%	-	-	-	HMMSmart_SM00179,superfamily_TB module/8-cys domain,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
LTBP2	4053	genome.wustl.edu	37	14	74974747	74974747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000428.2	-1	reviewed	p.N1235S	1.000	67	0%	103	24.3%	3	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
LTBP2	4053	genome.wustl.edu	37	14	75019632	75019632	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000428.2	-1	reviewed	p.G385	0.505	114	0%	86	20.9%	2	0%	-	-	-	NULL
KIAA0317	9870	genome.wustl.edu	37	14	75139614	75139614	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039479.1	-1	validated	p.R448*	0.975	310	0.3%	103	23.3%	4	0%	-	-	-	NULL
YLPM1	56252	genome.wustl.edu	37	14	75248221	75248221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019589.2	+1	validated	p.T492N	1.000	341	0%	177	23.7%	8	25%	unknown(0)	deleterious(0)	-	NULL
YLPM1	56252	genome.wustl.edu	37	14	75264760	75264760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019589.2	+1	validated	p.E920D	0.996	138	0%	51	29.4%	7	42.8%	benign(0.182)	tolerated(0.4)	neutral(0.033)	NULL
YLPM1	56252	genome.wustl.edu	37	14	75279438	75279438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019589.2	+1	validated	p.V1819M	1.000	127	0%	64	17.2%	24	45.8%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
DLST	1743	genome.wustl.edu	37	14	75357763	75357763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001933.4	+1	validated	p.S112Y	1.000	237	0%	158	19%	49	26.5%	possibly_damaging(0.77)	deleterious(0.01)	deleterious(0.692)	HMMPfam_Biotin_lipoyl,PatternScan_LIPOYL,superfamily_Single hybrid motif
EIF2B2	8892	genome.wustl.edu	37	14	75469744	75469744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014239.3	+1	reviewed	p.S17R	0.996	45	0%	50	14%	27	55.5%	benign(0.027)	tolerated(0.16)	neutral(0.061)	NULL
MLH3	27030	genome.wustl.edu	37	14	75513530	75513530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040108.1	-1	reviewed	p.Q943H	0.000	325	0%	420	24.3%	7	28.5%	unknown(0)	deleterious(0)	-	NULL
ACYP1	97	genome.wustl.edu	37	14	75530229	75530229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001107.3	-1	reviewed	p.V10M	1.000	479	0%	365	23%	41	39%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_Acylphosphatase,superfamily_Acylphosphatase-like
FOS	2353	genome.wustl.edu	37	14	75747991	75747991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005252.3	+1	reviewed	p.A336D	1.000	56	0%	65	29.2%	134	36.5%	benign(0.006)	tolerated(0.06)	neutral(0.323)	NULL
TGFB3	7043	genome.wustl.edu	37	14	76437537	76437537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003239.2	-1	reviewed	p.T193I	0.998	134	0%	69	24.6%	5	20%	benign(0.111)	tolerated(0.52)	neutral(0.017)	HMMPfam_TGFb_propeptide
C14orf118	55668	genome.wustl.edu	37	14	76638294	76638294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017926.2	+1	validated	p.R279I	1.000	298	0%	142	25.4%	7	28.5%	probably_damaging(0.959)	tolerated(0.12)	deleterious(0.663)	NULL
ESRRB	2103	genome.wustl.edu	37	14	76949044	76949044	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004452.3	+1	reviewed	p.L243	1.000	150	0%	91	28.6%	0	-	-	-	-	superfamily_Str_ncl_receptor
ANGEL1	23357	genome.wustl.edu	37	14	77256995	77256995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015305.3	-1	validated	p.I604T	1.000	285	0%	181	12.2%	4	25%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
ANGEL1	23357	genome.wustl.edu	37	14	77269726	77269726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015305.3	-1	validated	p.D536N	1.000	172	0%	134	19.4%	1	0%	possibly_damaging(0.679)	deleterious(0)	deleterious(0.686)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
ANGEL1	23357	genome.wustl.edu	37	14	77273081	77273081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015305.3	-1	validated	p.R353Q	1.000	144	0.7%	129	25.6%	6	50%	possibly_damaging(0.777)	tolerated(0.32)	neutral(0.314)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
TMEM63C	57156	genome.wustl.edu	37	14	77686361	77686361	+	Silent	SNP	G	G	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020431.2	+1	validated	p.L81	1.000	166	0%	134	17.2%	0	-	-	-	-	NULL
NOXRED1	122945	genome.wustl.edu	37	14	77872463	77872463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113475.1	-1	validated	p.N233S	0.983	242	0%	156	10.9%	1	0%	benign(0.113)	deleterious(0.01)	neutral(0.415)	NULL
AHSA1	10598	genome.wustl.edu	37	14	77931024	77931024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012111.2	+1	validated	p.R186C	0.995	237	0%	182	24.2%	256	40.2%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
ISM2	145501	genome.wustl.edu	37	14	77942132	77942132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199296.2	-1	reviewed	p.G508S	0.999	44	0%	37	24.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMOP,HMMSmart_SM00723
ADCK1	57143	genome.wustl.edu	37	14	78288837	78288837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020421.3	+1	validated	p.E65D	1.000	180	0%	72	12.5%	12	58.3%	possibly_damaging(0.795)	tolerated(0.16)	neutral(0.358)	NULL
NRXN3	9369	genome.wustl.edu	37	14	79270028	79270028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004796.4	+1	reviewed	p.T331A	1.000	232	0%	62	16.1%	0	-	benign(0.143)	deleterious(0)	neutral(0.457)	superfamily_ConA_like_lec_gl
NRXN3	9369	genome.wustl.edu	37	14	79433640	79433640	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004796.4	+1	reviewed	p.N583T	1.000	194	0%	89	19.1%	0	-	possibly_damaging(0.445)	deleterious(0.04)	deleterious(0.494)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN3	9369	genome.wustl.edu	37	14	80327991	80327991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000440563	+1	known	p.R533H	1.000	48	0%	46	13%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
CEP128	145508	genome.wustl.edu	37	14	81251622	81251622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152446.3	-1	validated	p.A610S	0.132	561	0%	302	24.5%	5	20%	unknown(0)	tolerated(0.76)	-	NULL
CEP128	145508	genome.wustl.edu	37	14	81380696	81380696	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152446.3	-1	validated	p.Y68	0.779	407	0%	267	15.4%	3	0%	-	-	-	NULL
TSHR	7253	genome.wustl.edu	37	14	81609296	81609296	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000369.2	+1	reviewed	p.S298	0.427	223	0.4%	132	17.4%	1	0%	-	-	-	superfamily_L domain-like
TSHR	7253	genome.wustl.edu	37	14	81609451	81609451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000369.2	+1	reviewed	p.A350D	1.000	662	0%	296	26.7%	0	-	benign(0.002)	tolerated(0.63)	neutral(0.004)	NULL
TSHR	7253	genome.wustl.edu	37	14	81610124	81610124	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000369.2	+1	reviewed	p.T574	0.001	687	0%	244	18.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SEL1L	6400	genome.wustl.edu	37	14	81945992	81945992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000261258	-1	known	p.R74C	0.000	186	0%	125	20.8%	16	43.7%	possibly_damaging(0.905)	deleterious(0)	deleterious(0.804)	NULL
SEL1L	6400	genome.wustl.edu	37	14	81964775	81964775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005065.4	-1	validated	p.R319C	1.000	199	0%	123	30.1%	12	8.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like
FLRT2	23768	genome.wustl.edu	37	14	86089275	86089275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013231.4	+1	reviewed	p.G473S	1.000	173	0%	118	22%	0	-	benign(0.002)	tolerated(0.05)	neutral(0.345)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
FLRT2	23768	genome.wustl.edu	37	14	86089327	86089327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013231.4	+1	reviewed	p.R490Q	1.000	147	0%	118	24.6%	0	-	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
GPR65	8477	genome.wustl.edu	37	14	88477851	88477851	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003608.3	+1	validated	p.E220D	0.978	138	0%	67	25.4%	20	0%	benign(0.151)	deleterious(0.02)	neutral(0.397)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SPATA7	55812	genome.wustl.edu	37	14	88892622	88892622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018418.4	+1	reviewed	p.M140T	0.796	91	0%	33	21.2%	11	45.4%	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
SPATA7	55812	genome.wustl.edu	37	14	88899513	88899513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018418.4	+1	reviewed	p.D373N	1.000	347	0%	228	14.9%	9	33.3%	benign(0.106)	tolerated(0.42)	neutral(0.022)	NULL
EML5	161436	genome.wustl.edu	37	14	89161745	89161745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183387.2	-1	validated	p.L800F	0.982	400	0%	207	10.1%	0	-	benign(0.011)	tolerated(0.27)	neutral(0.034)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40
KCNK13	56659	genome.wustl.edu	37	14	90650888	90650888	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022054.2	+1	reviewed	p.L256	0.997	224	0%	114	24.6%	1	0%	-	-	-	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
PSMC1	5700	genome.wustl.edu	37	14	90731418	90731418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002802.2	+1	reviewed	p.S200F	1.000	491	0%	352	24.1%	70	55.7%	possibly_damaging(0.455)	deleterious(0)	deleterious(0.594)	superfamily_P-loop containing nucleoside triphosphate hydrolases
C14orf102	55051	genome.wustl.edu	37	14	90754663	90754663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017970.2	-1	validated	p.R1019K	0.998	443	0%	321	18.7%	13	38.4%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
C14orf102	55051	genome.wustl.edu	37	14	90756647	90756647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017970.2	-1	validated	p.V716A	0.997	169	0%	118	19.5%	7	28.5%	possibly_damaging(0.761)	tolerated(0.26)	neutral(0.316)	superfamily_Prenyl_trans
RPS6KA5	9252	genome.wustl.edu	37	14	91360784	91360784	+	Silent	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004755.2	-1	validated	p.G539	0.783	282	0%	161	26.1%	2	100%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RPS6KA5	9252	genome.wustl.edu	37	14	91413895	91413895	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004755.2	-1	validated	e4-1	1.000	182	0%	81	30.9%	0	-	-	-	-	-
C14orf159	80017	genome.wustl.edu	37	14	91655295	91655295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102368.1	+1	validated	p.L326M	1.000	164	0%	128	22.7%	42	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C14orf159	80017	genome.wustl.edu	37	14	91662787	91662787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102368.1	+1	validated	p.L422M	0.996	190	0%	83	31.3%	109	52.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR68	8111	genome.wustl.edu	37	14	91700896	91700896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003485.3	-1	validated	p.N177D	0.048	47	0%	63	11.1%	15	0%	benign(0)	tolerated(0.68)	neutral(0.002)	HMMPfam_7tm_1,superfamily_SSF81321
GPR68	8111	genome.wustl.edu	37	14	91700900	91700900	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003485.3	-1	validated	p.D175	0.714	49	0%	66	28.8%	16	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CCDC88C	440193	genome.wustl.edu	37	14	91760588	91760588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080414.2	-1	validated	p.Q1347H	1.000	548	0.2%	438	11.6%	20	30%	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	NULL
CCDC88C	440193	genome.wustl.edu	37	14	91763786	91763786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080414.2	-1	validated	p.A1277T	0.213	213	0%	226	19.9%	12	33.3%	benign(0)	tolerated(1)	-	NULL
CCDC88C	440193	genome.wustl.edu	37	14	91770293	91770293	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080414.2	-1	validated	p.S1129	0.170	46	0%	58	20.7%	10	40%	-	-	-	NULL
CCDC88C	440193	genome.wustl.edu	37	14	91804869	91804869	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080414.2	-1	validated	p.D285	0.683	136	0%	141	17.7%	2	0%	-	-	-	superfamily_Prefoldin
FBLN5	10516	genome.wustl.edu	37	14	92349361	92349361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006329.3	-1	reviewed	p.G267S	1.000	226	0%	88	19.3%	25	8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
ATXN3	4287	genome.wustl.edu	37	14	92560142	92560142	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004993.5	-1	reviewed	p.E90*	1.000	235	0%	205	10.2%	3	0%	-	-	-	HMMPfam_Josephin
CPSF2	53981	genome.wustl.edu	37	14	92620714	92620714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017437.1	+1	validated	p.V385M	1.000	224	0.9%	82	23.2%	20	50%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
RIN3	79890	genome.wustl.edu	37	14	93043758	93043758	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024832.3	+1	validated	p.H101	1.000	171	0%	75	17.3%	19	15.7%	-	-	-	HMMSmart_SM00252,superfamily_SH2 domain
LGMN	5641	genome.wustl.edu	37	14	93179217	93179217	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008530.1	-1	reviewed	e7-1	1.000	56	0%	65	29.2%	0	-	-	-	-	-
GOLGA5	9950	genome.wustl.edu	37	14	93264258	93264258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005113.2	+1	reviewed	p.S159N	0.979	103	0%	122	32.8%	32	40.6%	benign(0.005)	tolerated(0.43)	neutral(0.013)	NULL
CHGA	1113	genome.wustl.edu	37	14	93398825	93398825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001275.3	+1	reviewed	p.E307K	0.991	67	0%	78	17.9%	750	71.8%	possibly_damaging(0.787)	tolerated(0.14)	deleterious(0.544)	HMMPfam_Granin
ITPK1	3705	genome.wustl.edu	37	14	93424559	93424559	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142593.1	-1	validated	p.S219	0.040	264	0%	235	16.2%	194	38.6%	-	-	-	HMMPfam_Ins134_P3_kin,superfamily_Glutathione synthetase ATP-binding domain-like
ITPK1	3705	genome.wustl.edu	37	14	93429126	93429126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142593.1	-1	validated	p.L145M	1.000	62	0%	68	22.1%	164	50.6%	benign(0.026)	deleterious(0.02)	neutral(0.384)	HMMPfam_Ins134_P3_kin,superfamily_Glutathione synthetase ATP-binding domain-like
UBR7	55148	genome.wustl.edu	37	14	93684909	93684909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175748.3	+1	validated	p.R213Q	0.990	191	0%	122	27%	26	50%	benign(0.199)	tolerated(0.59)	neutral(0.024)	NULL
UBR7	55148	genome.wustl.edu	37	14	93686681	93686681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175748.3	+1	validated	p.Q349H	1.000	175	0%	184	23.9%	41	36.5%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
BTBD7	55727	genome.wustl.edu	37	14	93717835	93717835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002860.2	-1	validated	p.P639H	1.000	261	0%	138	25.4%	6	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
BTBD7	55727	genome.wustl.edu	37	14	93717956	93717956	+	Missense_Mutation	SNP	G	G	A	rs147262200	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002860.2	-1	validated	p.R599C	1.000	222	0%	111	9.9%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
UNC79	57578	genome.wustl.edu	37	14	93963522	93963522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020818.3	+1	validated	p.A86V	1.000	265	0%	100	20%	0	-	benign(0.4)	deleterious(0)	deleterious(0.573)	NULL
UNC79	57578	genome.wustl.edu	37	14	94008840	94008840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020818.3	+1	validated	p.T341M	1.000	242	0.4%	126	29.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DDX24	57062	genome.wustl.edu	37	14	94517573	94517573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020414.3	-1	reviewed	p.Q848H	0.371	230	0%	125	17.6%	96	1%	unknown(0)	deleterious(0.03)	-	NULL
DDX24	57062	genome.wustl.edu	37	14	94517774	94517774	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020414.3	-1	reviewed	p.R781	1.000	229	0%	99	22.2%	151	52.9%	-	-	-	NULL
IFI27L2	83982	genome.wustl.edu	37	14	94594141	94594141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032036.2	-1	validated	p.E130K	0.039	569	0.2%	337	18.1%	17	23.5%	benign(0)	tolerated(1)	-	NULL
PPP4R4	57718	genome.wustl.edu	37	14	94716515	94716515	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_058237.1	+1	reviewed	p.L540V	1.000	399	0%	181	26.5%	0	-	possibly_damaging(0.541)	tolerated(0.12)	neutral(0.444)	superfamily_ARM repeat
SERPINA10	51156	genome.wustl.edu	37	14	94750365	94750365	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001100607.1	-1	reviewed	p.I424	0.997	339	0.3%	156	17.9%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINA1	5265	genome.wustl.edu	37	14	94849423	94849423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000295.4	-1	reviewed	p.T51I	0.526	430	0%	155	12.3%	849	14.2%	benign(0.229)	deleterious(0.02)	neutral(0.406)	HMMPfam_Serpin,superfamily_Serpins
SERPINA9	327657	genome.wustl.edu	37	14	94936107	94936107	+	Missense_Mutation	SNP	G	G	T	rs4905204	byCluster;byFrequency;by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175739.3	-1	validated	p.A42D	0.000	159	0%	101	23.8%	0	-	benign(0.009)	tolerated(0.26)	neutral(0.035)	superfamily_Serpins
GSC	145258	genome.wustl.edu	37	14	95234882	95234882	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173849.2	-1	reviewed	p.A240	0.572	135	0%	181	23.8%	3	66.6%	-	-	-	NULL
DICER1	23405	genome.wustl.edu	37	14	95571561	95571561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030621.3	-1	reviewed	p.A1039D	1.000	131	0%	69	17.4%	5	20%	probably_damaging(0.953)	tolerated(0.47)	neutral(0.408)	HMMPfam_PAZ,superfamily_SSF101690
CLMN	79789	genome.wustl.edu	37	14	95670573	95670573	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024734.3	-1	validated	p.A371	0.000	350	0%	133	18%	2	0%	-	-	-	NULL
BDKRB2	624	genome.wustl.edu	37	14	96707129	96707129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000623.3	+1	reviewed	p.R155H	1.000	93	0%	44	15.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
ATG2B	55102	genome.wustl.edu	37	14	96756130	96756130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018036.5	-1	validated	p.T1957A	1.000	248	0%	111	11.7%	9	33.3%	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	NULL
ATG2B	55102	genome.wustl.edu	37	14	96761417	96761417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018036.5	-1	validated	p.S1769Y	1.000	175	0%	123	17.9%	4	50%	benign(0.001)	tolerated(0.05)	neutral(0.345)	NULL
ATG2B	55102	genome.wustl.edu	37	14	96769449	96769449	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018036.5	-1	validated	p.F1662L	1.000	299	0%	186	24.7%	3	100%	possibly_damaging(0.531)	deleterious(0)	deleterious(0.623)	NULL
ATG2B	55102	genome.wustl.edu	37	14	96775895	96775895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018036.5	-1	validated	p.V1400I	0.078	310	0%	103	26.2%	3	33.3%	benign(0.001)	tolerated(0.54)	neutral(0.007)	NULL
PAPOLA	10914	genome.wustl.edu	37	14	97029171	97029171	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032632.3	+1	validated	p.E695*	1.000	427	0%	188	23.4%	35	5.7%	-	-	-	NULL
CYP46A1	10858	genome.wustl.edu	37	14	100158142	100158142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006668.1	+1	reviewed	p.R76W	0.997	457	0.2%	339	22.7%	0	-	benign(0.334)	deleterious(0.03)	deleterious(0.469)	HMMPfam_p450,superfamily_Cytochrome_P450
EML1	2009	genome.wustl.edu	37	14	100367271	100367271	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008707.1	+1	reviewed	p.L320	0.997	618	0%	345	25.5%	3	66.6%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
EML1	2009	genome.wustl.edu	37	14	100405538	100405538	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008707.1	+1	reviewed	p.V751	1.000	143	0%	147	19.7%	6	50%	-	-	-	NULL
WARS	7453	genome.wustl.edu	37	14	100828209	100828209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004184.3	-1	reviewed	p.Y50C	1.000	335	0%	170	27.1%	576	42%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_WHEP-TRS,superfamily_S15/NS1 RNA-binding domain
RTL1	388015	genome.wustl.edu	37	14	101348570	101348570	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134888.2	-1	reviewed	p.A852	0.999	80	0%	68	23.5%	0	-	-	-	-	superfamily_DNA/RNA polymerases
RTL1	388015	genome.wustl.edu	37	14	101349644	101349644	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134888.2	-1	reviewed	p.I494	0.848	63	0%	84	19%	0	-	-	-	-	superfamily_Acid proteases
DIO3	1735	genome.wustl.edu	37	14	102028025	102028025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001362.3	+1	reviewed	p.F38L	1.000	33	0%	41	22%	0	-	possibly_damaging(0.529)	tolerated(0.07)	deleterious(0.497)	HMMPfam_T4_deiodinase
DIO3	1735	genome.wustl.edu	37	14	102028133	102028133	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001362.3	+1	reviewed	p.I74	0.995	26	0%	16	25%	1	0%	-	-	-	HMMPfam_T4_deiodinase
DIO3	1735	genome.wustl.edu	37	14	102028421	102028421	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001362.3	+1	reviewed	p.I170	1.000	47	0%	47	17%	0	-	-	-	-	HMMPfam_T4_deiodinase
DYNC1H1	1778	genome.wustl.edu	37	14	102452233	102452233	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001376.4	+1	reviewed	p.I557	0.992	158	0%	88	17%	4	50%	-	-	-	HMMPfam_DHC_N1
DYNC1H1	1778	genome.wustl.edu	37	14	102460530	102460530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001376.4	+1	reviewed	p.H1009Y	1.000	835	0%	337	23.4%	3	0%	benign(0.017)	tolerated(0.12)	neutral(0.261)	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102463378	102463378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001376.4	+1	reviewed	p.R1191C	1.000	145	0%	74	20.3%	4	50%	benign(0.157)	tolerated(0.07)	neutral(0.333)	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102478270	102478270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001376.4	+1	reviewed	p.S2226L	1.000	289	0%	158	25.9%	15	40%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540
ZNF839	55778	genome.wustl.edu	37	14	102792820	102792820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018335.3	+1	validated	p.D263Y	1.000	92	0%	118	22.9%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CINP	51550	genome.wustl.edu	37	14	102816276	102816276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032630.2	-1	reviewed	p.T139M	0.978	346	0%	327	21.4%	81	40.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TECPR2	9895	genome.wustl.edu	37	14	102891493	102891493	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014844.3	+1	validated	p.P272	0.062	307	0%	260	23.5%	0	-	-	-	-	superfamily_WD40_like
TNFAIP2	7127	genome.wustl.edu	37	14	103599762	103599762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006291.2	+1	reviewed	p.R537C	0.266	51	0%	63	25.4%	338	52%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Sec6
BAG5	9529	genome.wustl.edu	37	14	104026938	104026938	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001015049.1	-1	reviewed	p.F229	0.417	271	0.4%	327	22%	8	87.5%	-	-	-	HMMPfam_BAG,HMMSmart_SM00264,superfamily_BAG domain
BAG5	9529	genome.wustl.edu	37	14	104027216	104027216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001015049.1	-1	reviewed	p.N137D	0.990	259	0%	335	17%	7	0%	benign(0.011)	tolerated(0.54)	neutral(0.008)	NULL
KLC1	3831	genome.wustl.edu	37	14	104142037	104142037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130107.1	+1	reviewed	p.K441N	1.000	185	0%	154	26%	63	39.6%	probably_damaging(0.989)	tolerated(0.07)	deleterious(0.758)	superfamily_TPR-like
XRCC3	7517	genome.wustl.edu	37	14	104165908	104165908	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001100118.1	-1	reviewed	p.T189	0.986	43	0%	52	17.3%	26	34.6%	-	-	-	HMMPfam_Rad51,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPP1R13B	23368	genome.wustl.edu	37	14	104263820	104263820	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015316.2	-1	reviewed	p.Q15	1.000	377	0%	199	20.6%	3	33.3%	-	-	-	NULL
TDRD9	122402	genome.wustl.edu	37	14	104481164	104481164	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153046.2	+1	validated	p.R737*	1.000	430	0%	173	19.7%	0	-	-	-	-	NULL
TDRD9	122402	genome.wustl.edu	37	14	104482406	104482406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153046.2	+1	validated	p.D771G	1.000	236	0%	111	23.4%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
TDRD9	122402	genome.wustl.edu	37	14	104493092	104493092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153046.2	+1	validated	p.A1033V	0.995	164	0%	100	20%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
KIF26A	26153	genome.wustl.edu	37	14	104640632	104640632	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015656.1	+1	validated	p.R726	0.985	18	0%	13	38.5%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
INF2	64423	genome.wustl.edu	37	14	105174847	105174847	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022489.3	+1	validated	p.R604*	1.000	46	0%	56	25%	46	6.5%	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
INF2	64423	genome.wustl.edu	37	14	105180839	105180839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022489.3	+1	validated	p.L1114I	0.133	41	0%	68	30.9%	66	15.1%	unknown(0)	deleterious(0)	-	NULL
AKT1	207	genome.wustl.edu	37	14	105243048	105243048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014431.1	-1	reviewed	p.Q79K	1.000	41	0%	82	22%	106	41.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ZBTB42	100128927	genome.wustl.edu	37	14	105268545	105268545	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001137601.1	+1	validated	p.P337	0.936	47	0%	45	20%	6	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KIAA0284	283638	genome.wustl.edu	37	14	105334867	105334867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001112726.1	+1	validated	p.R27H	0.503	104	0%	114	10.5%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FHA,HMMSmart_FHA,superfamily_SMAD_FHA
AHNAK2	113146	genome.wustl.edu	37	14	105408927	105408927	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138420.2	-1	validated	p.A4287	0.000	341	0%	275	25.8%	8	87.5%	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105410890	105410890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138420.2	-1	validated	p.A3633V	0.001	315	0%	315	18.7%	2	0%	possibly_damaging(0.806)	tolerated(0.06)	deleterious(0.626)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105420053	105420053	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138420.2	-1	validated	p.Q579*	0.001	1112	0%	965	20.7%	2	50%	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105420682	105420682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138420.2	-1	validated	p.T369I	0.000	98	1%	81	27.2%	1	0%	possibly_damaging(0.539)	tolerated(0.1)	deleterious(0.469)	NULL
GPR132	29933	genome.wustl.edu	37	14	105517353	105517353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013345.2	-1	reviewed	p.R374M	0.002	165	0%	153	14.4%	6	33.3%	benign(0.422)	deleterious(0)	deleterious(0.582)	NULL
GPR132	29933	genome.wustl.edu	37	14	105518092	105518092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013345.2	-1	reviewed	p.V128I	0.977	95	0%	70	32.9%	5	0%	benign(0.003)	tolerated(1)	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
JAG2	3714	genome.wustl.edu	37	14	105612991	105612991	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002226.3	-1	reviewed	p.R850	1.000	37	0%	22	27.3%	50	50%	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
BTBD6	90135	genome.wustl.edu	37	14	105716946	105716946	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033271.2	+1	validated	p.S390	0.019	154	0%	187	21.9%	107	39.2%	-	-	-	HMMPfam_PHR
MTA1	9112	genome.wustl.edu	37	14	105929556	105929556	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004689.3	+1	reviewed	p.Y326*	1.000	31	3.2%	49	14.3%	35	28.5%	-	-	-	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding
IGHG4	3503	genome.wustl.edu	37	14	106092331	106092331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390543	-1	known	p.L25M	0.156	114	0%	104	26%	2675	0.1%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
IGHA1	3493	genome.wustl.edu	37	14	106174212	106174212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390547	-1	known	p.A193T	0.424	105	0%	126	25.4%	75	0%	benign(0.073)	deleterious(0.02)	neutral(0.388)	superfamily_SSF48726
IGHA1	3493	genome.wustl.edu	37	14	106174423	106174423	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390547	-1	known	p.C122*	0.000	244	0%	243	23.9%	76	0%	-	-	-	superfamily_SSF48726
IGHA1	3493	genome.wustl.edu	37	14	106174862	106174862	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390547	-1	known	p.G47	0.000	131	0%	157	19.7%	76	0%	-	-	-	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
IGHG1	3500	genome.wustl.edu	37	14	106208483	106208483	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390548	-1	known	p.T139	0.875	291	0%	285	10.9%	2034	0.6%	-	-	-	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
IGHV4-39	28394	genome.wustl.edu	37	14	106877761	106877761	+	Missense_Mutation	SNP	C	C	A	rs115523671	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390619	-1	known	p.S78I	0.000	238	0%	227	11.5%	658	0%	benign(0.067)	tolerated(0.39)	neutral(0.021)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV3-43	28426	genome.wustl.edu	37	14	106926231	106926231	+	Missense_Mutation	SNP	C	C	A	rs182842897	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000434710	-1	known	p.S104I	0.733	441	0%	440	22%	160	0%	benign(0.362)	deleterious(0.01)	deleterious(0.521)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV1-45	28466	genome.wustl.edu	37	14	106962958	106962958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390621	-1	known	p.E108D	0.993	383	0%	181	18.2%	0	-	benign(0.006)	tolerated(0.11)	neutral(0.272)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
ENSG00000231400	0	genome.wustl.edu	37	15	20363051	20363051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000442923	+1	known	p.E77K	1.000	213	0%	270	11.1%	4	0%	-	-	-	HMMPfam_DUF663
GOLGA6L6	727832	genome.wustl.edu	37	15	20739809	20739809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145004.1	-1	inferred	p.E647D	0.998	269	0%	121	12.4%	0	-	unknown(0)	tolerated(0.16)	-	NULL
OR4N4	283694	genome.wustl.edu	37	15	22382596	22382596	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005241.1	+1	provisional	p.N42H	1.000	1165	0%	952	12%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
TUBGCP5	114791	genome.wustl.edu	37	15	22842144	22842144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102610.1	+1	validated	p.D195N	0.980	325	0%	179	20.1%	2	0%	possibly_damaging(0.68)	deleterious(0.01)	deleterious(0.648)	NULL
TUBGCP5	114791	genome.wustl.edu	37	15	22850952	22850952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102610.1	+1	validated	p.R405Q	1.000	342	0%	163	23.9%	9	22.2%	benign(0.061)	tolerated(0.44)	neutral(0.017)	HMMPfam_Spc97_Spc98
CYFIP1	23191	genome.wustl.edu	37	15	22956140	22956140	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033028.1	+1	validated	p.T28	1.000	343	0%	272	22.8%	0	-	-	-	-	HMMPfam_FragX_IP
NIPA2	81614	genome.wustl.edu	37	15	23012324	23012324	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008860.2	-1	reviewed	p.E135*	1.000	326	0%	173	24.3%	49	46.9%	-	-	-	HMMPfam_DUF803,superfamily_Multidrug resistance efflux transporter EmrE
GOLGA8IP	283796	genome.wustl.edu	37	15	23261815	23261815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000450802	+1	known	p.Q309H	0.092	36	0%	42	19%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
GOLGA8E	390535	genome.wustl.edu	37	15	23445372	23445372	+	Silent	SNP	C	C	T	rs75976576		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000450934	+1	known	p.I405	0.190	195	0%	272	6.2%	0	-	-	-	-	NULL
LOC283685	283685	genome.wustl.edu	37	15	23686466	23686466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343322.1	-1	model	p.R348W	0.002	54	0%	30	20%	0	-	unknown(0)	deleterious(0)	-	NULL
LOC283685	283685	genome.wustl.edu	37	15	23686542	23686542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343322.1	-1	model	p.Q322H	0.030	54	0%	42	28.6%	0	-	unknown(0)	deleterious(0.04)	-	NULL
MAGEL2	54551	genome.wustl.edu	37	15	23890412	23890412	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019066.4	-1	reviewed	p.A223	0.510	117	0%	146	26.7%	0	-	-	-	-	NULL
C15orf2	23742	genome.wustl.edu	37	15	24921184	24921184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018958.2	+1	reviewed	p.R57H	0.000	6	0.000	12	0.417	0	-	possibly_damaging(0.865)	deleterious(0.02)	deleterious(0.718)	NULL
C15orf2	23742	genome.wustl.edu	37	15	24922124	24922124	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018958.2	+1	reviewed	p.E370	0.000	135	0%	159	15.1%	0	-	-	-	-	NULL
C15orf2	23742	genome.wustl.edu	37	15	24923167	24923167	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018958.2	+1	reviewed	p.K718T	0.000	265	0%	315	12.1%	0	-	probably_damaging(0.976)	-	-	NULL
C15orf2	23742	genome.wustl.edu	37	15	24923486	24923486	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018958.2	+1	reviewed	p.D824	0.000	260	0%	320	11.9%	0	-	-	-	-	NULL
C15orf2	23742	genome.wustl.edu	37	15	24924025	24924025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018958.2	+1	reviewed	p.G1004D	0.014	129	0%	149	15.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SNRPN	6638	genome.wustl.edu	37	15	25220615	25220615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003097.3	+1	reviewed	p.M38I	1.000	530	0%	339	16.2%	158	75.9%	possibly_damaging(0.749)	deleterious(0)	deleterious(0.720)	HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins
SNRPN	6638	genome.wustl.edu	37	15	25223033	25223033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003097.3	+1	reviewed	p.P177S	0.252	66	0%	51	13.7%	356	0%	unknown(0)	deleterious(0.03)	-	NULL
SNRPN	6638	genome.wustl.edu	37	15	25223412	25223412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003097.3	+1	reviewed	p.T211M	0.861	183	0%	132	25%	273	0%	unknown(0)	tolerated(0.22)	-	NULL
LOC100289059	100289059	genome.wustl.edu	37	15	25414822	25414822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343317.1	-1	model	p.T104M	0.001	26	0%	14	28.6%	0	-	-	-	-	NULL
UBE3A	7337	genome.wustl.edu	37	15	25616712	25616712	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000462.2	-1	reviewed	p.D206	0.210	492	0%	262	29.8%	13	53.8%	-	-	-	NULL
UBE3A	7337	genome.wustl.edu	37	15	25650639	25650639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000462.2	-1	reviewed	p.P14S	1.000	395	0%	109	17.4%	7	71.4%	benign(0)	tolerated(1)	-	NULL
ATP10A	57194	genome.wustl.edu	37	15	25928584	25928584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024490.3	-1	reviewed	p.A1114V	0.997	226	0%	103	22.3%	16	6.2%	benign(0.268)	deleterious(0)	deleterious(0.473)	NULL
ATP10A	57194	genome.wustl.edu	37	15	25947157	25947157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024490.3	-1	reviewed	p.T889I	1.000	260	0%	192	21.4%	11	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF56784
ATP10A	57194	genome.wustl.edu	37	15	25972389	25972389	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024490.3	-1	reviewed	p.A255	0.187	365	0%	380	19.7%	2	50%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_SSF81653
ATP10A	57194	genome.wustl.edu	37	15	25981263	25981263	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024490.3	-1	reviewed	p.F227C	1.000	148	0%	155	23.2%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653
GABRB3	2562	genome.wustl.edu	37	15	26806278	26806278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000814.4	-1	reviewed	p.R294Q	1.000	521	0%	274	20.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
HERC2	8924	genome.wustl.edu	37	15	28380624	28380624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004667.4	-1	reviewed	p.S4077I	1.000	255	0%	210	16.2%	6	0%	possibly_damaging(0.818)	tolerated(0.47)	neutral(0.320)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
HERC2	8924	genome.wustl.edu	37	15	28422639	28422639	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004667.4	-1	reviewed	p.T3060	0.953	145	0.7%	142	21.8%	3	33.3%	-	-	-	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
HERC2	8924	genome.wustl.edu	37	15	28436380	28436380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004667.4	-1	reviewed	p.R2821H	1.000	192	0%	158	29.1%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Galactose-binding domain-like
HERC2	8924	genome.wustl.edu	37	15	28447531	28447531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004667.4	-1	reviewed	p.S2481Y	0.999	104	0%	79	21.5%	3	66.6%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
HERC2	8924	genome.wustl.edu	37	15	28458979	28458979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004667.4	-1	reviewed	p.T2232N	1.000	253	0%	268	21.3%	2	100%	possibly_damaging(0.896)	deleterious(0.01)	deleterious(0.759)	NULL
HERC2	8924	genome.wustl.edu	37	15	28483763	28483763	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004667.4	-1	reviewed	p.G1245*	0.997	311	0%	192	15.6%	0	-	-	-	-	HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain
HERC2	8924	genome.wustl.edu	37	15	28517370	28517370	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004667.4	-1	reviewed	p.G358	0.002	112	0%	110	12.7%	2	0%	-	-	-	NULL
ENSG00000206149	0	genome.wustl.edu	37	15	28878787	28878787	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000382946	+1	known	p.L29	1.000	437	0%	290	17.2%	0	-	-	-	-	NULL
ENSG00000206149	0	genome.wustl.edu	37	15	28886618	28886618	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000382946	+1	known	p.P449	0.989	208	0%	125	17.6%	0	-	-	-	-	NULL
ENSG00000206149	0	genome.wustl.edu	37	15	28900800	28900800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000383034	+1	known	p.S52Y	0.976	157	0%	118	27.1%	1	0%	-	-	-	NULL
TJP1	7082	genome.wustl.edu	37	15	30001141	30001141	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003257.3	-1	validated	p.E1491V	0.999	399	0%	144	18.8%	27	7.4%	possibly_damaging(0.747)	deleterious(0)	deleterious(0.719)	NULL
TJP1	7082	genome.wustl.edu	37	15	30009037	30009037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003257.3	-1	validated	p.P1327L	1.000	522	0.2%	239	22.2%	13	53.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TJP1	7082	genome.wustl.edu	37	15	30010303	30010303	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003257.3	-1	validated	p.K1299T	1.000	285	0%	174	24.7%	19	78.9%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
TJP1	7082	genome.wustl.edu	37	15	30010868	30010868	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003257.3	-1	validated	p.Q1160*	0.939	182	0%	113	18.6%	16	18.7%	-	-	-	NULL
TJP1	7082	genome.wustl.edu	37	15	30010912	30010912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003257.3	-1	validated	p.R1145H	1.000	263	0.4%	141	27%	15	86.6%	benign(0.288)	deleterious(0)	deleterious(0.533)	NULL
ENSG00000215315	0	genome.wustl.edu	37	15	30337092	30337092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000400005	+1	known	p.A89V	0.945	122	0%	203	21.7%	1	0%	-	-	-	HMMPfam_MARVEL
ENSG00000103832	0	genome.wustl.edu	37	15	31090557	31090557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000220188	+1	known	p.R124M	0.991	68	0%	57	22.8%	2	0%	-	-	-	NULL
MTMR10	54893	genome.wustl.edu	37	15	31251128	31251128	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017762.2	-1	validated	p.G291	1.000	258	0%	111	21.6%	7	42.8%	-	-	-	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
MTMR10	54893	genome.wustl.edu	37	15	31260129	31260129	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017762.2	-1	validated	p.N187H	1.000	239	0%	105	19%	3	100%	benign(0.198)	tolerated(0.08)	neutral(0.319)	NULL
TRPM1	4308	genome.wustl.edu	37	15	31355350	31355350	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002420.4	-1	reviewed	p.S290	0.460	93	0%	50	20%	0	-	-	-	-	NULL
OTUD7A	161725	genome.wustl.edu	37	15	31818566	31818566	+	Silent	SNP	G	G	A	rs184361722	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130901.1	-1	provisional	p.G286	0.947	51	0%	47	21.3%	0	-	-	-	-	HMMPfam_OTU
FMN1	342184	genome.wustl.edu	37	15	33357277	33357277	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001103184.2	-1	validated	e2-2	1.000	357	0%	268	12.7%	0	-	-	-	-	-
RYR3	6263	genome.wustl.edu	37	15	33952506	33952506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001036.3	+1	validated	p.R1502C	1.000	103	0%	80	22.5%	0	-	probably_damaging(1)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	33955109	33955109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001036.3	+1	validated	p.G1793D	1.000	394	0%	243	21.8%	0	-	probably_damaging(1)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34018659	34018659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001036.3	+1	validated	p.L2329M	1.000	127	0%	56	10.7%	0	-	probably_damaging(0.998)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34130530	34130530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001036.3	+1	validated	p.D4117Y	0.395	264	0%	105	22.9%	0	-	benign(0.408)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34134153	34134153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001036.3	+1	validated	p.R4376W	0.018	401	0%	150	25.3%	0	-	probably_damaging(0.999)	-	-	HMMPfam_RR_TM4-6
CHRM5	1133	genome.wustl.edu	37	15	34355108	34355108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012125.3	+1	validated	p.V64F	1.000	346	0.3%	189	22.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
CHRM5	1133	genome.wustl.edu	37	15	34355519	34355519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012125.3	+1	validated	p.A201T	1.000	245	0%	134	17.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
PGBD4	161779	genome.wustl.edu	37	15	34396387	34396387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152595.4	+1	validated	p.G552D	0.009	337	0%	299	25.4%	1	0%	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	NULL
C15orf29	79768	genome.wustl.edu	37	15	34445115	34445115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024713.2	-1	validated	p.A105D	1.000	218	0%	101	15.8%	15	40%	probably_damaging(0.999)	tolerated(0.39)	deleterious(0.506)	NULL
C15orf55	256646	genome.wustl.edu	37	15	34640466	34640466	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175741.1	+1	validated	p.Q105*	0.999	99	0%	65	24.6%	0	-	-	-	-	NULL
C15orf55	256646	genome.wustl.edu	37	15	34643007	34643007	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175741.1	+1	validated	p.R276	1.000	168	0%	115	20%	0	-	-	-	-	NULL
C15orf55	256646	genome.wustl.edu	37	15	34646777	34646777	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175741.1	+1	validated	p.I374	1.000	606	0%	289	18.7%	0	-	-	-	-	NULL
C15orf55	256646	genome.wustl.edu	37	15	34648039	34648039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175741.1	+1	validated	p.E582D	0.081	29	0%	18	27.8%	0	-	possibly_damaging(0.481)	deleterious(0)	deleterious(0.604)	NULL
ACTC1	70	genome.wustl.edu	37	15	35084465	35084465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005159.4	-1	reviewed	p.R212C	1.000	218	0%	242	19.8%	0	-	possibly_damaging(0.905)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ACTC1	70	genome.wustl.edu	37	15	35085715	35085715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005159.4	-1	reviewed	p.S62N	1.000	135	0%	240	13.3%	0	-	benign(0.081)	-	-	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,superfamily_Actin-like ATPase domain
AQR	9716	genome.wustl.edu	37	15	35174737	35174737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014691.2	-1	validated	p.L1044S	1.000	248	0%	129	22.5%	22	40.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
AQR	9716	genome.wustl.edu	37	15	35198760	35198760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014691.2	-1	validated	p.R606H	1.000	409	0%	259	21.6%	13	38.4%	benign(0.408)	tolerated(0.14)	neutral(0.382)	NULL
ENSG00000248276	0	genome.wustl.edu	37	15	35376836	35376836	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000514460	+1	known	NULL	0.910	115	0%	157	12.1%	0	-	-	-	-	-
ENSG00000248276	0	genome.wustl.edu	37	15	35377144	35377144	+	RNA	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000514460	+1	known	NULL	0.005	347	0.3%	364	24.7%	1	0%	-	-	-	-
C15orf41	84529	genome.wustl.edu	37	15	36950033	36950033	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130010.1	+1	validated	e5-1	1.000	363	0%	190	24.7%	0	-	-	-	-	-
MEIS2	4212	genome.wustl.edu	37	15	37390246	37390246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170675.2	-1	reviewed	p.P56L	1.000	46	0%	50	26%	0	-	benign(0.058)	tolerated(0.08)	neutral(0.303)	NULL
TMCO5A	145942	genome.wustl.edu	37	15	38243390	38243390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152453.2	+1	provisional	p.F274L	0.985	303	0%	82	9.8%	0	-	benign(0)	tolerated(1)	-	NULL
SPRED1	161742	genome.wustl.edu	37	15	38591612	38591612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152594.2	+1	reviewed	p.R24Q	1.000	230	0%	73	27.4%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like
FAM98B	283742	genome.wustl.edu	37	15	38757556	38757556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173611.2	+1	validated	p.D102Y	1.000	204	0%	169	17.2%	19	36.8%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_DUF2465
FAM98B	283742	genome.wustl.edu	37	15	38765746	38765746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173611.2	+1	validated	p.G191E	1.000	167	0%	175	30.3%	18	33.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DUF2465
FAM98B	283742	genome.wustl.edu	37	15	38776538	38776538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173611.2	+1	validated	p.K327T	1.000	53	0%	87	24.1%	13	38.4%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_DUF2465
EIF2AK4	440275	genome.wustl.edu	37	15	40313113	40313113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013703.2	+1	validated	p.S1396Y	1.000	321	0%	180	23.9%	26	50%	benign(0.009)	tolerated(0.35)	neutral(0.021)	NULL
SRP14	6727	genome.wustl.edu	37	15	40328590	40328590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003134.4	-1	validated	p.A119T	0.060	203	0.5%	201	32.8%	561	34.9%	unknown(0)	-	-	NULL
BUB1B	701	genome.wustl.edu	37	15	40468831	40468831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001211.5	+1	reviewed	p.Q180K	0.983	377	0%	131	14.5%	13	0%	benign(0.021)	tolerated(0.33)	neutral(0.025)	NULL
PLCB2	5330	genome.wustl.edu	37	15	40594679	40594679	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004573.2	-1	validated	p.N121	0.252	102	0%	79	20.3%	9	0%	-	-	-	NULL
PLCB2	5330	genome.wustl.edu	37	15	40594694	40594694	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004573.2	-1	validated	p.V116	1.000	108	0%	84	14.3%	7	28.5%	-	-	-	NULL
PLCB2	5330	genome.wustl.edu	37	15	40595532	40595532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004573.2	-1	validated	p.S63N	0.997	197	0%	232	20.3%	1	100%	possibly_damaging(0.666)	tolerated(0.31)	neutral(0.263)	NULL
DISP2	85455	genome.wustl.edu	37	15	40659532	40659532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033510.1	+1	reviewed	p.A407T	0.975	103	0%	133	16.5%	0	-	possibly_damaging(0.769)	tolerated(0.09)	deleterious(0.582)	NULL
DISP2	85455	genome.wustl.edu	37	15	40659550	40659550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033510.1	+1	reviewed	p.H413Y	1.000	101	0%	121	19%	0	-	possibly_damaging(0.862)	tolerated(0.12)	deleterious(0.594)	NULL
DISP2	85455	genome.wustl.edu	37	15	40661976	40661976	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033510.1	+1	reviewed	p.H1221	1.000	23	0%	33	21.2%	0	-	-	-	-	NULL
BAHD1	22893	genome.wustl.edu	37	15	40751076	40751076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014952.3	+1	validated	p.S138I	0.039	7	0.000	16	0.375	12	50%	benign(0.032)	deleterious(0)	neutral(0.446)	NULL
BAHD1	22893	genome.wustl.edu	37	15	40751222	40751222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014952.3	+1	validated	p.P187S	0.999	21	0%	32	21.9%	5	60%	benign(0.004)	tolerated(0.07)	neutral(0.319)	NULL
BAHD1	22893	genome.wustl.edu	37	15	40757605	40757605	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014952.3	+1	validated	p.C708*	1.000	318	0%	444	11.5%	18	0%	-	-	-	HMMPfam_BAH,HMMSmart_SM00439
RPUSD2	27079	genome.wustl.edu	37	15	40863954	40863954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152260.1	+1	provisional	p.T253I	1.000	150	0%	115	26.1%	20	35%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PseudoU_synth_2,superfamily_PsdUridine_synth_cat_dom
CASC5	57082	genome.wustl.edu	37	15	40954289	40954289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170589.3	+1	validated	p.T2311I	0.716	347	0%	213	31%	16	50%	probably_damaging(0.976)	tolerated(0.07)	deleterious(0.737)	NULL
VPS18	57617	genome.wustl.edu	37	15	41194847	41194847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020857.2	+1	reviewed	p.L744M	0.997	159	0%	121	18.2%	49	44.8%	possibly_damaging(0.61)	tolerated(0.34)	neutral(0.234)	NULL
DLL4	54567	genome.wustl.edu	37	15	41228578	41228578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019074.2	+1	reviewed	p.T465A	1.000	33	0%	56	12.5%	8	12.5%	benign(0.002)	tolerated(0.29)	neutral(0.029)	HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196
INO80	54617	genome.wustl.edu	37	15	41276057	41276057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017553.1	-1	reviewed	p.M1380I	1.000	152	0%	86	20.9%	16	43.7%	benign(0.003)	tolerated(0.17)	neutral(0.059)	NULL
INO80	54617	genome.wustl.edu	37	15	41313146	41313146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017553.1	-1	reviewed	p.L1076M	0.989	114	0%	38	23.7%	13	46.1%	benign(0.01)	tolerated(0.08)	neutral(0.300)	NULL
INO80	54617	genome.wustl.edu	37	15	41365658	41365658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017553.1	-1	reviewed	p.A455T	1.000	614	0.2%	228	23.7%	2	50%	benign(0.248)	deleterious(0.01)	neutral(0.431)	superfamily_P-loop containing nucleoside triphosphate hydrolases
INO80	54617	genome.wustl.edu	37	15	41366575	41366575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017553.1	-1	reviewed	p.E440D	0.993	292	0%	146	26%	0	-	probably_damaging(0.971)	tolerated(1)	neutral(0.413)	superfamily_P-loop containing nucleoside triphosphate hydrolases
NUSAP1	51203	genome.wustl.edu	37	15	41657756	41657756	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016359.3	+1	validated	p.S273T	0.028	78	0%	61	21.3%	62	43.5%	probably_damaging(0.955)	tolerated(0.27)	neutral(0.432)	NULL
RTF1	23168	genome.wustl.edu	37	15	41769481	41769481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015138.4	+1	validated	p.I560T	1.000	106	0%	82	29.3%	38	42.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ITPKA	3706	genome.wustl.edu	37	15	41794639	41794639	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002220.1	+1	reviewed	p.R350*	0.054	101	0%	98	30.6%	1	100%	-	-	-	HMMPfam_IPK,superfamily_SSF56104
RPAP1	26015	genome.wustl.edu	37	15	41810253	41810253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015540.2	-1	reviewed	p.A1308D	1.000	219	0.5%	140	28.6%	44	27.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TYRO3	7301	genome.wustl.edu	37	15	41859736	41859736	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006293.3	+1	reviewed	e7+1	1.000	78	0%	64	15.6%	0	-	-	-	-	-
MGA	23269	genome.wustl.edu	37	15	41961237	41961237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080541.2	+1	validated	p.A49T	1.000	377	0%	253	26.5%	2	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
MGA	23269	genome.wustl.edu	37	15	41988287	41988287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080541.2	+1	validated	p.S360I	0.905	330	0%	172	20.9%	1	0%	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
MGA	23269	genome.wustl.edu	37	15	42028877	42028877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080541.2	+1	validated	p.S1472I	1.000	73	0%	32	15.6%	3	66.6%	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	NULL
MAPKBP1	23005	genome.wustl.edu	37	15	42107555	42107555	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128608.1	+1	validated	p.E429	1.000	209	0%	132	25.8%	1	0%	-	-	-	superfamily_WD40 repeat-like
MAPKBP1	23005	genome.wustl.edu	37	15	42115683	42115683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128608.1	+1	validated	p.A1219T	0.084	52	0%	66	16.7%	7	28.5%	benign(0.002)	tolerated(0.65)	neutral(0.003)	NULL
MAPKBP1	23005	genome.wustl.edu	37	15	42115987	42115987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128608.1	+1	validated	p.R1320Q	0.892	141	0.7%	145	29%	7	42.8%	benign(0.076)	tolerated(0.38)	neutral(0.023)	NULL
JMJD7-PLA2G4B	8681	genome.wustl.edu	37	15	42127352	42127352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005090.3	+1	validated	p.L135M	1.000	46	0%	54	16.7%	18	16.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
JMJD7-PLA2G4B	8681	genome.wustl.edu	37	15	42134079	42134079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005090.3	+1	validated	p.V416M	0.002	49	0%	73	30.1%	2	50%	possibly_damaging(0.791)	tolerated(0.26)	neutral(0.331)	NULL
JMJD7-PLA2G4B	8681	genome.wustl.edu	37	15	42136739	42136739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005090.3	+1	validated	p.A548V	0.971	216	0%	265	23%	8	75%	possibly_damaging(0.88)	tolerated(0.45)	neutral(0.355)	HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
SPTBN5	51332	genome.wustl.edu	37	15	42147624	42147624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016642.2	-1	validated	p.P3039H	0.178	42	0%	41	22%	1	0%	possibly_damaging(0.676)	deleterious(0.04)	deleterious(0.589)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN5	51332	genome.wustl.edu	37	15	42162747	42162747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016642.2	-1	validated	p.S1785L	0.043	74	1.4%	66	37.9%	3	33.3%	benign(0.006)	tolerated(0.1)	neutral(0.286)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN5	51332	genome.wustl.edu	37	15	42166597	42166597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016642.2	-1	validated	p.L1493M	0.028	110	0%	170	30.6%	0	-	probably_damaging(0.992)	tolerated(0.08)	deleterious(0.748)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN5	51332	genome.wustl.edu	37	15	42169080	42169080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016642.2	-1	validated	p.L1225M	0.116	33	0%	50	12%	0	-	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
EHD4	30844	genome.wustl.edu	37	15	42235264	42235264	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139265.3	-1	validated	e3+1	1.000	126	0%	94	10.6%	0	-	-	-	-	-
PLA2G4E	123745	genome.wustl.edu	37	15	42281668	42281668	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080490.1	-1	provisional	p.F527	1.000	95	0%	103	32%	0	-	-	-	-	HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
PLA2G4E	123745	genome.wustl.edu	37	15	42293401	42293401	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080490.1	-1	provisional	p.C180	1.000	211	0%	94	23.4%	0	-	-	-	-	NULL
PLA2G4D	283748	genome.wustl.edu	37	15	42363396	42363396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178034.3	-1	validated	p.R601C	0.090	45	0%	42	14.3%	0	-	possibly_damaging(0.932)	deleterious(0.01)	deleterious(0.784)	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
VPS39	23339	genome.wustl.edu	37	15	42453910	42453910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015289.2	-1	reviewed	p.C841Y	1.000	424	0%	199	19.1%	40	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Vps39_2
VPS39	23339	genome.wustl.edu	37	15	42470722	42470722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015289.2	-1	reviewed	p.E255D	1.000	329	0%	88	23.9%	12	33.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CNH
GANC	2595	genome.wustl.edu	37	15	42621518	42621518	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198141.2	+1	reviewed	p.I505	1.000	122	0%	37	18.9%	1	0%	-	-	-	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
CAPN3	825	genome.wustl.edu	37	15	42678382	42678382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000070.2	+1	reviewed	p.A133T	1.000	123	0%	61	23%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
CAPN3	825	genome.wustl.edu	37	15	42695124	42695124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000070.2	+1	reviewed	p.V557M	1.000	84	1.2%	48	22.9%	7	28.5%	possibly_damaging(0.768)	deleterious(0)	deleterious(0.730)	HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III),superfamily_EF-hand
CAPN3	825	genome.wustl.edu	37	15	42702174	42702174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000070.2	+1	reviewed	p.S699I	1.000	153	0%	110	20%	2	0%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
CAPN3	825	genome.wustl.edu	37	15	42703158	42703158	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000070.2	+1	reviewed	p.D780	1.000	566	0%	296	20.6%	8	12.5%	-	-	-	superfamily_EF-hand
ZFP106	64397	genome.wustl.edu	37	15	42736410	42736410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022473.1	-1	provisional	p.Q1114H	1.000	241	0%	170	17.6%	5	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZFP106	64397	genome.wustl.edu	37	15	42742479	42742479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022473.1	-1	provisional	p.S641Y	0.003	376	0%	101	22.8%	3	0%	possibly_damaging(0.708)	deleterious(0.01)	deleterious(0.661)	NULL
STARD9	57519	genome.wustl.edu	37	15	42875564	42875564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001129482.3	+1	model	p.R23I	1.000	671	0.1%	822	22.4%	0	-	probably_damaging(0.995)	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
STARD9	57519	genome.wustl.edu	37	15	42943213	42943213	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001129482.3	+1	model	e8-1	1.000	407	0%	95	13.7%	0	-	-	-	-	-
STARD9	57519	genome.wustl.edu	37	15	42967090	42967090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001129482.3	+1	model	p.L491I	0.992	86	0%	28	14.3%	0	-	probably_damaging(0.998)	-	-	superfamily_SMAD/FHA domain
STARD9	57519	genome.wustl.edu	37	15	42980316	42980316	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001129482.3	+1	model	p.I2094	0.000	179	0%	59	22%	0	-	-	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42985285	42985285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001129482.3	+1	model	p.V3751I	0.001	167	0%	59	16.9%	1	0%	benign(0.176)	-	-	NULL
TTBK2	146057	genome.wustl.edu	37	15	43093384	43093384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000263802	-1	known	p.S600I	0.999	36	0%	25	36%	1	100%	unknown(0)	deleterious(0.01)	-	NULL
EPB42	2038	genome.wustl.edu	37	15	43507414	43507414	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000119.2	-1	reviewed	p.T133	0.995	116	0%	123	26%	0	-	-	-	-	HMMPfam_Transglut_N,superfamily_Ig_E-set
EPB42	2038	genome.wustl.edu	37	15	43508573	43508573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000119.2	-1	reviewed	p.R60H	0.320	305	0.3%	261	19.9%	0	-	benign(0.027)	tolerated(0.3)	neutral(0.030)	HMMPfam_Transglut_N,superfamily_Ig_E-set
TGM5	9333	genome.wustl.edu	37	15	43552323	43552323	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201631.3	-1	reviewed	p.I121	0.023	50	0%	44	22.7%	0	-	-	-	-	HMMPfam_Transglut_N,superfamily_E set domains
LCMT2	9836	genome.wustl.edu	37	15	43621832	43621832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014793.3	-1	reviewed	p.R286W	0.387	53	0%	109	22.9%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LCM,superfamily_SSF53335
ADAL	161823	genome.wustl.edu	37	15	43632483	43632483	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012969.2	+1	validated	p.K92N	1.000	362	0%	192	21.9%	7	57.1%	possibly_damaging(0.804)	tolerated(0.06)	deleterious(0.625)	HMMPfam_A_deaminase,superfamily_SSF51556
ADAL	161823	genome.wustl.edu	37	15	43644044	43644044	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000422466	+1	known	p.L323	1.000	290	0%	128	19.5%	6	33.3%	-	-	-	HMMPfam_A_deaminase,superfamily_Metallo-dependent hydrolases
TUBGCP4	27229	genome.wustl.edu	37	15	43669266	43669266	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014444.2	+1	provisional	e4+1	1.000	578	0%	506	21.5%	0	-	-	-	-	-
TP53BP1	7158	genome.wustl.edu	37	15	43707945	43707945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001141980.1	-1	validated	p.A1646T	0.285	256	0.4%	136	23.5%	35	42.8%	benign(0.001)	tolerated(0.35)	neutral(0.021)	NULL
TP53BP1	7158	genome.wustl.edu	37	15	43784645	43784645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001141980.1	-1	validated	p.G10E	1.000	144	0%	164	30.5%	4	50%	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43814173	43814173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002373.5	+1	reviewed	p.R168C	1.000	105	0%	105	21.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43815190	43815190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002373.5	+1	reviewed	p.A507T	0.995	95	0%	53	22.6%	1	100%	benign(0.001)	tolerated(0.11)	neutral(0.272)	NULL
PPIP5K1	9677	genome.wustl.edu	37	15	43873513	43873513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130858.1	-1	validated	p.R284Q	1.000	307	0%	182	13.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Glutathione synthetase ATP-binding domain-like
STRC	161497	genome.wustl.edu	37	15	43892237	43892237	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153700.2	-1	reviewed	p.Q1720H	1.000	403	0%	274	21.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
STRC	161497	genome.wustl.edu	37	15	43910166	43910166	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153700.2	-1	reviewed	p.G151	0.990	140	0%	98	15.3%	0	-	-	-	-	NULL
CATSPER2	117155	genome.wustl.edu	37	15	43932535	43932535	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172095.1	-1	reviewed	p.V183G	0.894	455	0%	287	16.7%	1	0%	possibly_damaging(0.81)	deleterious(0)	deleterious(0.750)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CATSPER2	117155	genome.wustl.edu	37	15	43932635	43932635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172095.1	-1	reviewed	p.A150S	0.996	313	0%	233	26.2%	2	0%	possibly_damaging(0.527)	deleterious(0.03)	deleterious(0.542)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
STRC	161497	genome.wustl.edu	37	15	43991978	43991978	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000381686	-1	known	p.Q1742	0.975	351	0%	243	11.1%	0	-	-	-	-	NULL
STRC	161497	genome.wustl.edu	37	15	43993422	43993422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000381686	-1	known	p.S1561I	0.468	194	0%	146	21.9%	0	-	-	-	-	NULL
STRC	161497	genome.wustl.edu	37	15	43995688	43995688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000381686	-1	known	p.A1451D	0.033	125	0%	78	26.9%	0	-	-	-	-	NULL
PDIA3	2923	genome.wustl.edu	37	15	44048912	44048912	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005313.4	+1	reviewed	p.K104	1.000	597	0%	460	22.8%	625	40.6%	-	-	-	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
MFAP1	4236	genome.wustl.edu	37	15	44097306	44097306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005926.2	-1	validated	p.R436W	1.000	159	0%	104	24%	70	47.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFAP1_C
SPG11	80208	genome.wustl.edu	37	15	44858195	44858195	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025137.3	-1	reviewed	p.R2286*	1.000	91	0%	20	35%	39	5.1%	-	-	-	NULL
SPG11	80208	genome.wustl.edu	37	15	44861597	44861597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025137.3	-1	reviewed	p.P2195L	1.000	424	0.2%	148	21.6%	19	73.6%	probably_damaging(0.997)	tolerated(0.28)	deleterious(0.498)	NULL
TRIM69	140691	genome.wustl.edu	37	15	45059620	45059620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182985.3	+1	reviewed	p.A385S	0.921	252	0%	107	15.9%	3	0%	benign(0.005)	tolerated(0.31)	neutral(0.027)	HMMPfam_SPRY,HMMSmart_SM00449
SORD	6652	genome.wustl.edu	37	15	45361177	45361177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003104.4	+1	validated	p.G238D	0.003	126	0%	90	20%	29	34.4%	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains
DUOX2	50506	genome.wustl.edu	37	15	45386357	45386357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014080.4	-1	reviewed	p.E1546D	1.000	277	0%	152	13.8%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
DUOX2	50506	genome.wustl.edu	37	15	45388081	45388081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014080.4	-1	reviewed	p.R1342H	0.999	140	0%	114	24.6%	0	-	possibly_damaging(0.73)	tolerated(0.11)	deleterious(0.538)	HMMPfam_FAD_binding_8,superfamily_Riboflavin synthase domain-like
DUOXA2	405753	genome.wustl.edu	37	15	45409502	45409502	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207581.3	+1	reviewed	p.T256	0.164	30	0%	45	20%	0	-	-	-	-	HMMPfam_DuoxA
DUOX1	53905	genome.wustl.edu	37	15	45428027	45428027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017434.3	+1	reviewed	p.G249C	1.000	83	0%	80	17.5%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
LOC100289438	100289438	genome.wustl.edu	37	15	45439759	45439759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343344.1	-1	model	p.V280I	0.998	217	0%	142	23.9%	1	100%	-	-	-	NULL
DUOX1	53905	genome.wustl.edu	37	15	45439829	45439829	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017434.3	+1	reviewed	p.L841	1.000	235	0%	156	21.8%	0	-	-	-	-	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
LOC100289438	100289438	genome.wustl.edu	37	15	45439901	45439901	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343344.1	-1	model	e6-1	0.004	106	0%	66	21.2%	0	-	-	-	-	-
GATM	2628	genome.wustl.edu	37	15	45668829	45668829	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001482.2	-1	reviewed	p.A86	1.000	171	0%	215	14%	0	-	-	-	-	HMMPfam_Amidinotransf,PatternScan_TONB_DEPENDENT_REC_1,superfamily_Pentein
SLC30A4	7782	genome.wustl.edu	37	15	45781230	45781230	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013309.4	-1	validated	p.L235	1.000	196	0%	65	18.5%	0	-	-	-	-	HMMPfam_Cation_efflux
PLDN	26258	genome.wustl.edu	37	15	45884413	45884413	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012388.2	+1	reviewed	p.G55*	1.000	327	0%	258	24%	3	0%	-	-	-	NULL
SEMA6D	80031	genome.wustl.edu	37	15	48056048	48056048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153618.1	+1	reviewed	p.A250D	1.000	198	0%	74	16.2%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
MYEF2	50804	genome.wustl.edu	37	15	48458136	48458136	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016132.3	-1	validated	p.I173	0.986	125	0%	115	14.8%	11	27.2%	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SLC12A1	6557	genome.wustl.edu	37	15	48537080	48537080	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000338.2	+1	reviewed	p.Y477	0.729	197	0%	96	26%	0	-	-	-	-	HMMPfam_AA_permease
SLC12A1	6557	genome.wustl.edu	37	15	48591409	48591409	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000338.2	+1	reviewed	p.E1011	1.000	208	0%	210	18.1%	1	0%	-	-	-	NULL
FBN1	2200	genome.wustl.edu	37	15	48777681	48777681	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000138.4	-1	reviewed	p.C1201S	1.000	183	0%	71	19.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
CEP152	22995	genome.wustl.edu	37	15	49031004	49031004	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014985.2	-1	provisional	p.R1469	0.000	219	0%	84	11.9%	6	33.3%	-	-	-	NULL
CEP152	22995	genome.wustl.edu	37	15	49074383	49074383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014985.2	-1	provisional	p.A456T	1.000	223	0%	63	36.5%	1	100%	benign(0.381)	tolerated(0.28)	neutral(0.153)	NULL
SECISBP2L	9728	genome.wustl.edu	37	15	49284582	49284582	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014701.2	-1	provisional	p.A1010	0.000	292	0%	123	23.6%	10	50%	-	-	-	NULL
SECISBP2L	9728	genome.wustl.edu	37	15	49329939	49329939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014701.2	-1	provisional	p.P18S	1.000	216	0%	162	21.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C15orf33	196951	genome.wustl.edu	37	15	49868985	49868985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152647.2	-1	validated	p.D167Y	1.000	181	0.6%	105	11.4%	7	0%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
DTWD1	56986	genome.wustl.edu	37	15	49926882	49926882	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144955.1	+1	validated	p.F186	0.001	134	0%	65	18.5%	18	27.7%	-	-	-	HMMPfam_DTW
SLC27A2	11001	genome.wustl.edu	37	15	50489761	50489761	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003645.3	+1	reviewed	p.Y181	0.970	205	0%	153	10.5%	5	20%	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
SLC27A2	11001	genome.wustl.edu	37	15	50518195	50518195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003645.3	+1	reviewed	p.T393I	0.002	174	0%	71	16.9%	3	0%	benign(0.035)	deleterious(0.04)	neutral(0.351)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
HDC	3067	genome.wustl.edu	37	15	50534642	50534642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002112.2	-1	validated	p.A602T	0.009	119	0%	60	13.3%	0	-	benign(0.028)	deleterious(0)	neutral(0.446)	NULL
HDC	3067	genome.wustl.edu	37	15	50540519	50540519	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002112.2	-1	validated	p.R355*	1.000	131	0%	78	16.7%	0	-	-	-	-	HMMPfam_Pyridoxal_deC,superfamily_PyrdxlP-dep_Trfase_major
USP8	9101	genome.wustl.edu	37	15	50789404	50789404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128610.1	+1	validated	p.P1005L	1.000	197	0%	87	33.3%	16	37.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UCH,superfamily_SSF54001
TRPM7	54822	genome.wustl.edu	37	15	50862085	50862085	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017672.4	-1	reviewed	p.P1822	0.998	266	0%	184	25%	6	0%	-	-	-	superfamily_Kinase_like
SPPL2A	84888	genome.wustl.edu	37	15	51012235	51012235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032802.3	-1	reviewed	p.A464T	1.000	461	0%	185	21.6%	55	21.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00730,HMMPfam_Peptidase_A22B
SPPL2A	84888	genome.wustl.edu	37	15	51041004	51041004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032802.3	-1	reviewed	p.V81I	0.000	383	0%	141	23.4%	13	23%	benign(0.048)	tolerated(0.18)	neutral(0.059)	HMMPfam_PA,superfamily_Transferrin receptor ectodomain apical domain
AP4E1	23431	genome.wustl.edu	37	15	51250835	51250835	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007347.3	+1	validated	p.A565	0.975	266	0%	85	23.5%	1	100%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
CYP19A1	1588	genome.wustl.edu	37	15	51503073	51503073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000103.3	-1	reviewed	p.D482Y	0.110	437	0.2%	106	25.5%	0	-	possibly_damaging(0.904)	deleterious(0.05)	deleterious(0.704)	HMMPfam_p450,superfamily_Cytochrome_P450
GLDN	342035	genome.wustl.edu	37	15	51687179	51687179	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181789.2	+1	validated	e5+1	1.000	247	0%	78	21.8%	0	-	-	-	-	-
DMXL2	23312	genome.wustl.edu	37	15	51766565	51766565	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015263.3	-1	validated	p.R2396*	1.000	146	0%	60	25%	6	50%	-	-	-	superfamily_WD40 repeat-like
DMXL2	23312	genome.wustl.edu	37	15	51766690	51766690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015263.3	-1	validated	p.S2354N	1.000	337	0%	171	17.5%	3	100%	unknown(0)	deleterious(0)	-	superfamily_WD40 repeat-like
DMXL2	23312	genome.wustl.edu	37	15	51790985	51790985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015263.3	-1	validated	p.T1479M	0.999	496	0.2%	257	18.7%	0	-	probably_damaging(0.994)	tolerated(0.11)	deleterious(0.724)	NULL
DMXL2	23312	genome.wustl.edu	37	15	51791950	51791950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015263.3	-1	validated	p.K1157N	0.998	191	0%	84	25%	3	0%	benign(0.001)	tolerated(0.44)	neutral(0.013)	NULL
TMOD3	29766	genome.wustl.edu	37	15	52179813	52179813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014547.4	+1	validated	p.P104H	0.998	148	0%	281	24.2%	22	31.8%	probably_damaging(0.977)	tolerated(0.07)	deleterious(0.738)	HMMPfam_Tropomodulin
MAPK6	5597	genome.wustl.edu	37	15	52350869	52350869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002748.3	+1	reviewed	p.S247Y	1.000	264	0%	102	15.7%	7	57.1%	probably_damaging(1)	tolerated(0.4)	deleterious(0.516)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MAPK6	5597	genome.wustl.edu	37	15	52353532	52353532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002748.3	+1	reviewed	p.P301L	1.000	358	0%	82	12.2%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MYO5C	55930	genome.wustl.edu	37	15	52497311	52497311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018728.2	-1	validated	p.G1524D	1.000	53	0%	32	21.9%	18	5.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MYO5C	55930	genome.wustl.edu	37	15	52534252	52534252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018728.2	-1	validated	p.Y850C	1.000	255	0%	146	10.3%	8	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5C	55930	genome.wustl.edu	37	15	52563995	52563995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018728.2	-1	validated	p.S266Y	0.993	308	0.3%	254	10.6%	6	16.6%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5C	55930	genome.wustl.edu	37	15	52571081	52571081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018728.2	-1	validated	p.K146N	1.000	196	0%	171	22.2%	9	44.4%	benign(0.113)	tolerated(0.05)	neutral(0.354)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5A	4644	genome.wustl.edu	37	15	52667587	52667587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000259.3	-1	reviewed	p.R831C	0.115	180	0%	92	20.7%	0	-	possibly_damaging(0.785)	deleterious(0)	deleterious(0.738)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5A	4644	genome.wustl.edu	37	15	52672055	52672055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000259.3	-1	reviewed	p.E688G	1.000	117	0%	69	31.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARPP19	10776	genome.wustl.edu	37	15	52849357	52849357	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006628.4	-1	validated	p.Y36	1.000	398	0%	333	21.9%	34	41.1%	-	-	-	HMMPfam_Endosulfine
FAM214A	56204	genome.wustl.edu	37	15	52885785	52885785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019600.2	-1	validated	p.S933F	1.000	206	0%	80	18.8%	23	43.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ONECUT1	3175	genome.wustl.edu	37	15	53049845	53049845	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004498.1	-1	provisional	p.N435	0.980	460	0%	147	19.7%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
UNC13C	440279	genome.wustl.edu	37	15	54305914	54305914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080534.1	+1	provisional	p.H272Y	1.000	124	0%	31	16.1%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54630629	54630629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080534.1	+1	provisional	p.S1552Y	1.000	238	0%	125	20%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF1041
PIGB	9488	genome.wustl.edu	37	15	55642961	55642961	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004855.4	+1	reviewed	p.N396K	0.100	287	0%	199	23.1%	31	48.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_22
CCPG1	9236	genome.wustl.edu	37	15	55652969	55652969	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004748.3	-1	validated	p.Q334	1.000	468	0%	259	22%	8	25%	-	-	-	NULL
PRTG	283659	genome.wustl.edu	37	15	55933315	55933315	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173814.4	-1	validated	p.C711	0.797	407	0%	277	27.1%	0	-	-	-	-	NULL
PRTG	283659	genome.wustl.edu	37	15	55971641	55971641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173814.4	-1	validated	p.P326S	1.000	180	0%	78	20.5%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF48726
NEDD4	4734	genome.wustl.edu	37	15	56155161	56155161	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198400.2	-1	validated	p.Y555*	1.000	589	0%	172	23.8%	2	0%	-	-	-	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP
RFX7	64864	genome.wustl.edu	37	15	56386692	56386692	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022841.5	-1	validated	p.S1078	0.995	368	0%	158	20.3%	4	25%	-	-	-	NULL
RFX7	64864	genome.wustl.edu	37	15	56388240	56388240	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022841.5	-1	validated	p.P562	0.022	240	0%	124	32.3%	2	50%	-	-	-	NULL
MNS1	55329	genome.wustl.edu	37	15	56736868	56736868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018365.2	-1	reviewed	p.R154C	1.000	697	0.1%	438	11.4%	11	27.2%	possibly_damaging(0.913)	deleterious(0.01)	deleterious(0.770)	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56923856	56923856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017661.2	-1	validated	p.L927P	1.000	377	0%	147	19.7%	11	45.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GCOM1	145781	genome.wustl.edu	37	15	57953706	57953706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018090.1	+1	reviewed	p.E393A	1.000	266	0%	68	13.2%	0	-	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	NULL
POLR2M	81488	genome.wustl.edu	37	15	58001498	58001498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015532.3	+1	reviewed	p.V234L	1.000	184	0%	155	19.4%	24	41.6%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
AQP9	366	genome.wustl.edu	37	15	58458984	58458984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020980.3	+1	reviewed	p.A75V	0.170	445	0.2%	102	19.6%	0	-	benign(0.019)	deleterious(0.02)	neutral(0.384)	HMMPfam_MIP,superfamily_Aquaporin-like
ADAM10	102	genome.wustl.edu	37	15	58904021	58904021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001110.2	-1	reviewed	p.V561M	1.000	389	0%	221	17.6%	84	44%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HSP90AB4P	664618	genome.wustl.edu	37	15	58984956	58984956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000380522	-1	known	p.K123N	1.000	61	0%	54	24.1%	0	-	-	-	-	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
FAM63B	54629	genome.wustl.edu	37	15	59102504	59102504	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040450.1	+1	validated	p.R347*	0.997	480	0.2%	227	22.5%	0	-	-	-	-	HMMPfam_DUF544
CCNB2	9133	genome.wustl.edu	37	15	59409446	59409446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004701.2	+1	reviewed	p.T285I	1.000	331	0%	157	28%	165	42.4%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Cyclin_C,HMMSmart_SM00385,superfamily_Cyclin-like
MYO1E	4643	genome.wustl.edu	37	15	59445850	59445850	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004998.2	-1	validated	p.R1007*	0.989	146	0%	134	30.6%	27	7.4%	-	-	-	NULL
LDHAL6B	92483	genome.wustl.edu	37	15	59499308	59499308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033195.1	+1	provisional	p.L57I	0.107	209	0%	231	16%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	superfamily_NAD(P)-bd
FAM81A	145773	genome.wustl.edu	37	15	59808969	59808969	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152450.2	+1	validated	p.H304	0.791	564	0%	206	18.9%	1	0%	-	-	-	NULL
GCNT3	9245	genome.wustl.edu	37	15	59911073	59911073	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004751.2	+1	reviewed	p.D212	0.994	289	0%	131	24.4%	18	33.3%	-	-	-	HMMPfam_Branch
GCNT3	9245	genome.wustl.edu	37	15	59911142	59911142	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004751.2	+1	reviewed	p.S235	1.000	199	0%	94	25.5%	15	66.6%	-	-	-	HMMPfam_Branch
BNIP2	663	genome.wustl.edu	37	15	59970200	59970200	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004330.2	-1	reviewed	p.R249*	1.000	585	0%	858	24.2%	9	0%	-	-	-	NULL
BNIP2	663	genome.wustl.edu	37	15	59971878	59971878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004330.2	-1	reviewed	p.L191V	0.997	411	0%	451	21.5%	11	63.6%	possibly_damaging(0.688)	tolerated(0.14)	deleterious(0.495)	NULL
NARG2	79664	genome.wustl.edu	37	15	60728414	60728414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024611.4	-1	validated	p.A813V	1.000	116	0%	76	18.4%	21	28.5%	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	HMMPfam_NARG2_C
RORA	6095	genome.wustl.edu	37	15	60793161	60793161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134260.2	-1	reviewed	p.A464T	1.000	264	0.8%	122	26.2%	2	0%	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
VPS13C	54832	genome.wustl.edu	37	15	62147105	62147105	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020821.1	-1	validated	p.R3709*	0.018	219	0%	72	20.8%	26	53.8%	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62173125	62173125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020821.1	-1	validated	p.A3269T	1.000	164	0%	71	29.6%	13	30.7%	probably_damaging(1)	tolerated(0.27)	deleterious(0.533)	NULL
LOC100289289	100289289	genome.wustl.edu	37	15	62548101	62548101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343368.1	-1	model	p.R508H	0.194	66	0%	17	47.1%	0	-	-	-	-	NULL
TLN2	83660	genome.wustl.edu	37	15	63097931	63097931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015059.2	+1	reviewed	p.A2204T	1.000	116	0%	49	22.4%	46	52.1%	benign(0.39)	deleterious(0.01)	deleterious(0.530)	NULL
TLN2	83660	genome.wustl.edu	37	15	63128212	63128212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015059.2	+1	reviewed	p.Q2438H	1.000	61	0%	54	22.2%	24	50%	possibly_damaging(0.833)	tolerated(0.07)	deleterious(0.637)	HMMPfam_I_LWEQ,HMMSmart_ILWEQ,superfamily_SSF109885
CA12	771	genome.wustl.edu	37	15	63619359	63619359	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001218.3	-1	reviewed	p.F327	1.000	793	0%	431	14.2%	68	27.9%	-	-	-	NULL
HERC1	8925	genome.wustl.edu	37	15	63958142	63958142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003922.3	-1	reviewed	p.E2844G	1.000	160	0.6%	72	23.6%	3	33.3%	probably_damaging(0.959)	-	-	NULL
PPIB	5479	genome.wustl.edu	37	15	64452367	64452367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000942.4	-1	reviewed	p.F93L	1.000	353	0%	465	20.2%	1448	36.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_CSA_PPIase
ZNF609	23060	genome.wustl.edu	37	15	64791994	64791994	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015042.1	+1	provisional	p.G126*	1.000	158	0%	102	28.4%	5	60%	-	-	-	NULL
PDCD7	10081	genome.wustl.edu	37	15	65421509	65421509	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005707.1	-1	reviewed	e2-1	1.000	407	0%	445	20.2%	0	-	-	-	-	-
CILP	8483	genome.wustl.edu	37	15	65494236	65494236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003613.3	-1	reviewed	p.S387Y	1.000	134	0.7%	80	30%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SM00409,superfamily_Immunoglobulin
CILP	8483	genome.wustl.edu	37	15	65497795	65497795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003613.3	-1	reviewed	p.R145H	0.767	28	0%	20	35%	0	-	probably_damaging(0.971)	tolerated(0.13)	deleterious(0.665)	superfamily_TSP-1 type 1 repeat
PARP16	54956	genome.wustl.edu	37	15	65558956	65558956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017851.4	-1	provisional	p.R155C	1.000	608	0%	273	26%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PARP,superfamily_SSF56399
IGDCC4	57722	genome.wustl.edu	37	15	65682636	65682636	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020962.1	-1	provisional	p.H755	0.765	292	0%	285	20%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
IGDCC4	57722	genome.wustl.edu	37	15	65684566	65684566	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020962.1	-1	provisional	p.G676	0.001	41	0%	46	21.7%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DPP8	54878	genome.wustl.edu	37	15	65748651	65748651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_197960.2	-1	reviewed	p.A693V	1.000	192	0%	116	21.6%	8	12.5%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
DPP8	54878	genome.wustl.edu	37	15	65771369	65771369	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_197960.2	-1	reviewed	p.D451	1.000	261	0%	206	23.8%	1	100%	-	-	-	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
RAB11A	8766	genome.wustl.edu	37	15	66170194	66170194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004663.3	+1	reviewed	p.D111Y	1.000	383	0%	277	23.5%	311	45.9%	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
MEGF11	84465	genome.wustl.edu	37	15	66215289	66215289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032445.2	-1	validated	p.T565M	0.884	49	0%	47	25.5%	2	50%	benign(0.006)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00180,PatternScan_EGF_2
DIS3L	115752	genome.wustl.edu	37	15	66607396	66607396	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133375.3	+1	validated	p.I196	0.057	234	0%	104	26%	12	25%	-	-	-	NULL
ENSG00000247991	0	genome.wustl.edu	37	15	66618145	66618145	+	RNA	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000499718	-1	novel	NULL	0.000	196	0%	63	23.8%	0	-	-	-	-	-
DIS3L	115752	genome.wustl.edu	37	15	66625248	66625248	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133375.3	+1	validated	p.T869	0.979	143	0%	80	20%	24	54.1%	-	-	-	NULL
TIPIN	54962	genome.wustl.edu	37	15	66643901	66643901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017858.2	-1	validated	p.V84I	0.996	457	0%	349	15.2%	18	38.8%	possibly_damaging(0.793)	tolerated(0.36)	neutral(0.318)	HMMPfam_Swi3
RPL4	6124	genome.wustl.edu	37	15	66792503	66792503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000968.2	-1	reviewed	p.H310R	0.991	427	0%	450	23.6%	3750	40.3%	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
ZWILCH	55055	genome.wustl.edu	37	15	66813499	66813499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017975.3	+1	validated	p.D235N	1.000	238	0%	124	26.6%	11	45.4%	possibly_damaging(0.905)	tolerated(0.06)	deleterious(0.682)	HMMPfam_DUF2352
SMAD3	4088	genome.wustl.edu	37	15	67358570	67358570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005902.3	+1	reviewed	p.Q26H	1.000	148	0%	174	20.1%	4	50%	possibly_damaging(0.44)	deleterious(0)	deleterious(0.588)	HMMSmart_SM00523,superfamily_SMAD MH1 domain
IQCH	64799	genome.wustl.edu	37	15	67664857	67664857	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031715.2	+1	validated	p.F388V	0.000	86	0%	25	16%	2	50%	benign(0.01)	tolerated(0.33)	neutral(0.025)	HMMPfam_IQ
SKOR1	390598	genome.wustl.edu	37	15	68118865	68118865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031807.1	+1	provisional	p.K224N	1.000	154	0%	177	25.4%	1	0%	benign(0.189)	deleterious(0.01)	neutral(0.423)	superfamily_SAND_like,HMMPfam_c-SKI_SMAD_bind
CALML4	91860	genome.wustl.edu	37	15	68491960	68491960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033429.2	-1	validated	p.D75N	0.997	22	0%	15	40%	28	46.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00054,superfamily_EF-hand
ITGA11	22801	genome.wustl.edu	37	15	68612636	68612636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004439.1	-1	reviewed	p.R835C	0.711	104	0%	64	31.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
ITGA11	22801	genome.wustl.edu	37	15	68620452	68620452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004439.1	-1	reviewed	p.F684L	0.628	172	0%	117	25.6%	2	0%	benign(0.011)	tolerated(0.42)	neutral(0.015)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
NOX5	79400	genome.wustl.edu	37	15	69339821	69339821	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024505.3	+1	validated	p.I569	0.989	144	0%	105	23.8%	0	-	-	-	-	HMMPfam_NAD_binding_6,superfamily_SSF52343
GLCE	26035	genome.wustl.edu	37	15	69548518	69548518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015554.1	+1	validated	p.E125K	1.000	566	0%	200	25.5%	0	-	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	NULL
GLCE	26035	genome.wustl.edu	37	15	69553591	69553591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015554.1	+1	validated	p.T251N	0.112	446	0%	181	21.5%	3	0%	benign(0.001)	tolerated(0.59)	neutral(0.004)	NULL
KIF23	9493	genome.wustl.edu	37	15	69714463	69714463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138555.1	+1	reviewed	p.R150Q	1.000	211	0%	219	20.5%	12	16.6%	possibly_damaging(0.921)	tolerated(0.08)	deleterious(0.671)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF23	9493	genome.wustl.edu	37	15	69732265	69732265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138555.1	+1	reviewed	p.T579N	0.879	270	0%	170	21.2%	24	25%	benign(0.019)	tolerated(0.41)	neutral(0.016)	NULL
RPLP1	6176	genome.wustl.edu	37	15	69745320	69745320	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003.2	+1	reviewed	p.Y11	1.000	18	0%	20	20%	5317	34.1%	-	-	-	NULL
UACA	55075	genome.wustl.edu	37	15	70949415	70949415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018003.2	-1	validated	p.R1411W	1.000	105	0%	54	22.2%	65	36.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UACA	55075	genome.wustl.edu	37	15	70952524	70952524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018003.2	-1	validated	p.A1382V	0.994	298	0%	129	23.3%	85	44.7%	possibly_damaging(0.845)	deleterious(0.02)	deleterious(0.707)	NULL
UACA	55075	genome.wustl.edu	37	15	70960611	70960611	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018003.2	-1	validated	p.V804	0.009	364	0%	156	24.4%	18	55.5%	-	-	-	NULL
UACA	55075	genome.wustl.edu	37	15	70968848	70968848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018003.2	-1	validated	p.R372I	0.231	339	0%	151	17.9%	15	40%	benign(0.315)	deleterious(0.01)	deleterious(0.504)	NULL
MYO9A	4649	genome.wustl.edu	37	15	72122458	72122458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006901.2	-1	validated	p.Q2344H	1.000	212	0%	83	22.9%	6	50%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
MYO9A	4649	genome.wustl.edu	37	15	72154909	72154909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006901.2	-1	validated	p.S2008I	1.000	473	0%	159	20.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
MYO9A	4649	genome.wustl.edu	37	15	72244231	72244231	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006901.2	-1	validated	p.D730V	1.000	315	0%	148	26.4%	1	0%	benign(0.156)	tolerated(0.06)	neutral(0.337)	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO9A	4649	genome.wustl.edu	37	15	72260423	72260423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006901.2	-1	validated	p.H630Y	1.000	455	0%	183	20.2%	1	100%	benign(0)	tolerated(0.98)	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
PKM2	5315	genome.wustl.edu	37	15	72502716	72502716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002654.3	-1	reviewed	p.P117L	1.000	162	0%	122	25.4%	1082	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PK beta-barrel domain-like,HMMPfam_PK,superfamily_Phosphoenolpyruvate/pyruvate domain
PARP6	56965	genome.wustl.edu	37	15	72534243	72534243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020214.2	-1	provisional	p.V597I	1.000	132	0%	87	24.1%	63	44.4%	possibly_damaging(0.94)	tolerated(0.2)	neutral(0.434)	superfamily_ADP-ribosylation
CELF6	60677	genome.wustl.edu	37	15	72582354	72582354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052840.4	-1	reviewed	p.A177T	1.000	35	0%	61	24.6%	2	50%	unknown(0)	deleterious(0)	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
HEXA	3073	genome.wustl.edu	37	15	72638616	72638616	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000520.4	-1	reviewed	p.G461*	1.000	118	0%	85	14.1%	244	3.2%	-	-	-	HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases
ARIH1	25820	genome.wustl.edu	37	15	72873142	72873142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005744.3	+1	validated	p.R429H	1.000	243	0%	90	17.8%	14	42.8%	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	NULL
NEO1	4756	genome.wustl.edu	37	15	73408911	73408911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002499.3	+1	validated	p.Y54C	1.000	108	0%	34	17.6%	0	-	probably_damaging(0.989)	tolerated(0.13)	deleterious(0.692)	PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_I-set,superfamily_Immunoglobulin
NEO1	4756	genome.wustl.edu	37	15	73580687	73580687	+	Silent	SNP	T	T	G	rs112824920		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002499.3	+1	validated	p.S1148	1.000	175	0%	134	19.4%	33	54.5%	-	-	-	HMMPfam_Neogenin_C
NEO1	4756	genome.wustl.edu	37	15	73585794	73585794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002499.3	+1	validated	p.S1269I	1.000	366	0%	182	9.9%	58	12%	possibly_damaging(0.877)	tolerated(0.41)	neutral(0.357)	HMMPfam_Neogenin_C
HCN4	10021	genome.wustl.edu	37	15	73624535	73624535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005477.2	-1	reviewed	p.Q436H	1.000	135	0%	115	23.5%	0	-	benign(0.429)	tolerated(0.1)	neutral(0.426)	HMMPfam_Ion_trans,superfamily_SSF81324
NPTN	27020	genome.wustl.edu	37	15	73884373	73884373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012428.3	-1	reviewed	p.S182I	1.000	465	0%	164	24.4%	68	36.7%	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	HMMSmart_IG,superfamily_SSF48726
LOC100287587	100287587	genome.wustl.edu	37	15	74043373	74043373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343351.1	+1	model	p.D228N	1.000	83	0%	87	19.5%	9	66.6%	-	-	-	NULL
PML	5371	genome.wustl.edu	37	15	74325572	74325572	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033238.2	+1	reviewed	p.E492*	1.000	139	0%	146	25.3%	104	1.9%	-	-	-	NULL
ISLR2	57611	genome.wustl.edu	37	15	74425419	74425419	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130136.1	+1	validated	p.H108	1.000	32	0%	40	30%	3	0%	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
ISLR2	57611	genome.wustl.edu	37	15	74427137	74427137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130136.1	+1	validated	p.A681V	0.171	50	0%	63	23.8%	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
ISLR	3671	genome.wustl.edu	37	15	74467824	74467824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005545.3	+1	validated	p.A209T	0.375	19	0%	22	22.7%	104	0%	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_LRRCT,HMMSmart_LRRCT,superfamily_SSF52058
STRA6	64220	genome.wustl.edu	37	15	74473239	74473239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142617.1	-1	reviewed	p.S575I	1.000	138	0%	139	19.4%	31	19.3%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
SEMA7A	8482	genome.wustl.edu	37	15	74708248	74708248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003612.3	-1	reviewed	p.A294T	0.019	196	0%	159	24.5%	9	0%	benign(0)	tolerated(0.73)	neutral(0.002)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
CLK3	1198	genome.wustl.edu	37	15	74919714	74919714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130028.1	+1	reviewed	p.T428I	1.000	440	0%	306	24.5%	42	38%	possibly_damaging(0.942)	tolerated(0.2)	neutral(0.436)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CLK3	1198	genome.wustl.edu	37	15	74920375	74920375	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130028.1	+1	reviewed	p.R517	0.690	224	0%	165	19.4%	69	36.2%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CYP1A2	1544	genome.wustl.edu	37	15	75042295	75042295	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000761.3	+1	reviewed	p.Y72	0.641	71	0%	75	24%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CSK	1445	genome.wustl.edu	37	15	75093083	75093083	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127190.1	+1	validated	p.F206	0.996	120	0%	142	12.7%	132	9%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain
CSK	1445	genome.wustl.edu	37	15	75094066	75094066	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127190.1	+1	validated	p.E306	1.000	147	0%	119	17.6%	184	27.7%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ULK3	25989	genome.wustl.edu	37	15	75131620	75131620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099436.1	-1	validated	p.P316H	1.000	104	0%	180	37.8%	36	58.3%	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	HMMPfam_MIT,HMMSmart_SM00745
ULK3	25989	genome.wustl.edu	37	15	75132586	75132586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099436.1	-1	validated	p.R229W	1.000	74	0%	76	21.1%	22	22.7%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ULK3	25989	genome.wustl.edu	37	15	75134534	75134534	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099436.1	-1	validated	p.W82*	1.000	248	0%	304	26.6%	17	52.9%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SCAMP2	10066	genome.wustl.edu	37	15	75142988	75142988	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005697.3	-1	reviewed	p.L167	1.000	165	0%	135	21.5%	143	40.5%	-	-	-	HMMPfam_SCAMP
SCAMP5	192683	genome.wustl.edu	37	15	75311306	75311306	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138967.3	+1	validated	p.T230	0.482	88	0%	82	17.1%	5	80%	-	-	-	NULL
PTPN9	5780	genome.wustl.edu	37	15	75761275	75761275	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002833.2	-1	reviewed	p.G539	1.000	99	0%	72	25%	39	35.8%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
PTPN9	5780	genome.wustl.edu	37	15	75815471	75815471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002833.2	-1	reviewed	p.A138V	1.000	300	0%	163	22.1%	12	25%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C
CSPG4	1464	genome.wustl.edu	37	15	75968548	75968548	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001897.4	-1	reviewed	p.P2104	0.250	18	0.000	9	0.444	1	0%	-	-	-	NULL
CSPG4	1464	genome.wustl.edu	37	15	75968781	75968781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001897.4	-1	reviewed	p.L2027M	0.959	46	0%	41	22%	2	0%	possibly_damaging(0.935)	tolerated(0.29)	neutral(0.410)	NULL
CSPG4	1464	genome.wustl.edu	37	15	75982187	75982187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001897.4	-1	reviewed	p.P407S	0.003	21	0%	31	25.8%	1	100%	benign(0)	tolerated(0.69)	neutral(0.002)	NULL
UBE2Q2	92912	genome.wustl.edu	37	15	76191777	76191777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173469.2	+1	validated	p.T369I	1.000	356	0%	393	24.7%	11	27.2%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_UBC-like
FBXO22	26263	genome.wustl.edu	37	15	76225047	76225047	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_147188.1	+1	reviewed	p.A272	0.697	293	0%	146	11.6%	52	11.5%	-	-	-	NULL
ISL2	64843	genome.wustl.edu	37	15	76632768	76632768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145805.1	+1	provisional	p.K221N	1.000	23	0%	21	23.8%	0	-	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
SCAPER	49855	genome.wustl.edu	37	15	76763553	76763553	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020843.2	-1	validated	p.T1025	1.000	281	0%	89	19.1%	5	0%	-	-	-	NULL
SCAPER	49855	genome.wustl.edu	37	15	77134142	77134142	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020843.2	-1	validated	p.N108T	1.000	449	0%	255	24.3%	2	0%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
SCAPER	49855	genome.wustl.edu	37	15	77176169	77176169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000303521	-1	known	p.E51D	0.002	533	0%	583	20.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SGK269	79834	genome.wustl.edu	37	15	77472047	77472047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024776.2	-1	validated	p.P741H	0.983	233	0%	83	27.7%	0	-	possibly_damaging(0.46)	deleterious(0.01)	deleterious(0.556)	NULL
SGK269	79834	genome.wustl.edu	37	15	77474251	77474251	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024776.2	-1	validated	p.T6	1.000	283	0%	111	29.7%	0	-	-	-	-	NULL
LINGO1	84894	genome.wustl.edu	37	15	77907179	77907179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032808.5	-1	validated	p.S357L	1.000	113	0%	91	23.1%	5	0%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
LOC440292	440292	genome.wustl.edu	37	15	78234780	78234780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_496078.4	-1	model	p.R185W	1.000	175	0%	171	8.8%	11	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_HCaRG
TBC1D2B	23102	genome.wustl.edu	37	15	78310229	78310229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144572.1	-1	validated	p.R514Q	1.000	646	0%	500	22.6%	6	0%	probably_damaging(1)	tolerated(0.35)	deleterious(0.520)	NULL
SH2D7	646892	genome.wustl.edu	37	15	78390828	78390828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001101404.1	+1	provisional	p.D179N	0.010	121	0%	70	12.9%	0	-	possibly_damaging(0.895)	deleterious(0)	deleterious(0.797)	NULL
SH2D7	646892	genome.wustl.edu	37	15	78393425	78393425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001101404.1	+1	provisional	p.G277D	0.153	52	0%	29	24.1%	0	-	probably_damaging(0.99)	tolerated(0.09)	deleterious(0.738)	NULL
ACSBG1	23205	genome.wustl.edu	37	15	78472021	78472021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015162.3	-1	reviewed	p.A452V	0.995	131	0%	74	18.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSBG1	23205	genome.wustl.edu	37	15	78474356	78474356	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015162.3	-1	reviewed	p.I342	1.000	71	0%	72	13.9%	0	-	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSBG1	23205	genome.wustl.edu	37	15	78487061	78487061	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015162.3	-1	reviewed	p.A80	0.018	52	0%	41	31.7%	0	-	-	-	-	superfamily_Acetyl-CoA synthetase-like
DNAJA4	55466	genome.wustl.edu	37	15	78565441	78565441	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000423642	+1	known	e3-1	1.000	353	0%	382	22%	3	0%	-	-	-	-
WDR61	80349	genome.wustl.edu	37	15	78580723	78580723	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025234.1	-1	provisional	p.G188	1.000	403	0.2%	163	22.7%	101	45.5%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
IREB2	3658	genome.wustl.edu	37	15	78781055	78781055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004136.2	+1	validated	p.R673Q	0.030	249	0%	187	27.8%	15	40%	benign(0)	tolerated(0.33)	neutral(0.024)	superfamily_Aconitase iron-sulfur domain
CHRNA5	1138	genome.wustl.edu	37	15	78882523	78882523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000745.2	+1	provisional	p.L264F	1.000	361	0%	167	17.4%	4	75%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
CHRNB4	1143	genome.wustl.edu	37	15	78922132	78922132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000750.3	-1	validated	p.R172H	1.000	196	0.5%	179	19%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
MORF4L1	10933	genome.wustl.edu	37	15	79170560	79170560	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206839.1	+1	validated	p.R16*	1.000	592	0.3%	643	22.7%	96	19.7%	-	-	-	NULL
MORF4L1	10933	genome.wustl.edu	37	15	79186455	79186455	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206839.1	+1	validated	p.L268	1.000	264	0%	123	13.8%	250	10.4%	-	-	-	HMMPfam_MRG
CTSH	1512	genome.wustl.edu	37	15	79215424	79215424	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004390.3	-1	reviewed	p.H281	0.967	514	0%	415	10.6%	289	8.9%	-	-	-	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
CTSH	1512	genome.wustl.edu	37	15	79224736	79224736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004390.3	-1	reviewed	p.A157V	0.003	95	0%	68	11.8%	217	3.2%	-	-	-	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
RASGRF1	5923	genome.wustl.edu	37	15	79296448	79296448	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002891.4	-1	reviewed	p.P731	0.460	60	0%	49	14.3%	0	-	-	-	-	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
RASGRF1	5923	genome.wustl.edu	37	15	79323779	79323779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002891.4	-1	reviewed	p.L409M	1.000	273	0%	179	26.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ANKRD34C	390616	genome.wustl.edu	37	15	79586152	79586152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343327.1	+1	model	p.V176L	0.677	150	0%	109	19.3%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
KIAA1024	23251	genome.wustl.edu	37	15	79755408	79755408	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015206.2	+1	validated	e2-1	1.000	78	0%	52	23.1%	0	-	-	-	-	-
ARNT2	9915	genome.wustl.edu	37	15	80855469	80855469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014862.3	+1	reviewed	p.R402Q	1.000	280	0.4%	240	29.2%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00086,HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain)
FAM108C1	58489	genome.wustl.edu	37	15	81046633	81046633	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021214.1	+1	validated	p.G304	0.990	183	0%	57	24.6%	58	48.2%	-	-	-	superfamily_alpha/beta-Hydrolases
C15orf26	161502	genome.wustl.edu	37	15	81427672	81427672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173528.2	+1	predicted	p.R44I	0.909	138	0%	209	20.6%	0	-	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	NULL
IL16	3603	genome.wustl.edu	37	15	81578171	81578171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172217.3	+1	reviewed	p.Q444H	1.000	272	0%	165	21.2%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
IL16	3603	genome.wustl.edu	37	15	81582821	81582821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172217.3	+1	reviewed	p.V454M	1.000	390	0%	209	20.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TMC3	342125	genome.wustl.edu	37	15	81625508	81625508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080532.1	-1	provisional	p.S852L	0.998	252	0%	124	14.5%	0	-	possibly_damaging(0.879)	deleterious(0)	deleterious(0.787)	NULL
EFTUD1	79631	genome.wustl.edu	37	15	82530761	82530761	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024580.5	-1	validated	p.E206	0.999	398	0%	155	27.1%	4	50%	-	-	-	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM154B	283726	genome.wustl.edu	37	15	82574589	82574589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008226.1	+1	predicted	p.P128H	0.888	286	0%	126	11.9%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
FAM154B	283726	genome.wustl.edu	37	15	82574968	82574968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008226.1	+1	predicted	p.D254E	1.000	197	0%	83	31.3%	2	100%	benign(0.137)	tolerated(0.82)	neutral(0.012)	NULL
FAM154B	283726	genome.wustl.edu	37	15	82575145	82575145	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008226.1	+1	predicted	p.F313	0.949	196	0%	110	26.4%	0	-	-	-	-	NULL
FSD2	123722	genome.wustl.edu	37	15	83455955	83455955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007122.2	-1	provisional	p.A63V	0.000	400	0%	197	20.3%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
HOMER2	9455	genome.wustl.edu	37	15	83519971	83519971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199330.1	-1	reviewed	p.L270I	1.000	399	0%	389	18.3%	19	47.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
HOMER2	9455	genome.wustl.edu	37	15	83561463	83561463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199330.1	-1	reviewed	p.R46W	1.000	357	0%	194	18%	34	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like
C15orf40	123207	genome.wustl.edu	37	15	83680237	83680237	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000514272	-1	known	e1+1	0.000	57	0%	51	13.7%	0	-	-	-	-	-
C15orf40	123207	genome.wustl.edu	37	15	83680252	83680252	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000510873	-1	known	p.P31L	0.850	48	0%	49	26.5%	12	41.6%	-	-	-	NULL
BNC1	646	genome.wustl.edu	37	15	83926758	83926758	+	Missense_Mutation	SNP	A	A	C	rs146663253	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001717.3	-1	reviewed	p.D807E	0.103	360	0%	91	14.3%	0	-	benign(0.003)	tolerated(0.06)	neutral(0.323)	NULL
ADAMTSL3	57188	genome.wustl.edu	37	15	84539594	84539594	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207517.2	+1	validated	p.H281	1.000	122	0%	43	14%	0	-	-	-	-	NULL
LOC648809	648809	genome.wustl.edu	37	15	84784859	84784859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001713991.2	+1	model	p.A42T	1.000	324	0%	99	26.3%	0	-	-	-	-	superfamily_Translation proteins
LOC100288043	100288043	genome.wustl.edu	37	15	85201237	85201237	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343385.1	+1	model	p.E8*	1.000	30	0%	61	18%	5	0%	-	-	-	NULL
ZNF592	9640	genome.wustl.edu	37	15	85327398	85327398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014630.2	+1	validated	p.L498I	0.994	41	0%	31	29%	20	35%	probably_damaging(0.98)	tolerated(0.12)	deleterious(0.684)	NULL
ALPK3	57538	genome.wustl.edu	37	15	85400602	85400602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020778.4	+1	validated	p.S1080N	0.000	46	0%	55	30.9%	0	-	possibly_damaging(0.83)	deleterious(0)	deleterious(0.760)	NULL
ALPK3	57538	genome.wustl.edu	37	15	85411500	85411500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020778.4	+1	validated	p.S1846F	0.997	89	0%	85	22.4%	0	-	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	NULL
SLC28A1	9154	genome.wustl.edu	37	15	85431038	85431038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004213.3	+1	validated	p.P16H	0.000	265	0%	174	22.4%	0	-	benign(0.13)	deleterious(0.03)	neutral(0.376)	NULL
SLC28A1	9154	genome.wustl.edu	37	15	85461797	85461797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004213.3	+1	validated	p.L280I	1.000	441	0%	284	21.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Gate
SLC28A1	9154	genome.wustl.edu	37	15	85478348	85478348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004213.3	+1	validated	p.L436M	1.000	253	0%	140	26.4%	1	0%	possibly_damaging(0.76)	deleterious(0.04)	deleterious(0.630)	HMMPfam_Nucleos_tra2_C
SLC28A1	9154	genome.wustl.edu	37	15	85486739	85486739	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004213.3	+1	validated	p.I549L	0.995	237	0%	122	11.5%	0	-	possibly_damaging(0.722)	deleterious(0)	deleterious(0.707)	HMMPfam_Nucleos_tra2_C
PDE8A	5151	genome.wustl.edu	37	15	85666342	85666342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002605.2	+1	validated	p.T668I	1.000	206	0%	85	24.7%	12	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
AKAP13	11214	genome.wustl.edu	37	15	86266492	86266492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006738.4	+1	reviewed	p.R2233Q	1.000	525	0%	176	23.3%	14	28.5%	possibly_damaging(0.885)	tolerated(0.09)	deleterious(0.642)	NULL
AKAP13	11214	genome.wustl.edu	37	15	86283466	86283466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006738.4	+1	reviewed	p.S2528I	0.997	559	0%	336	21.1%	6	50%	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
NTRK3	4916	genome.wustl.edu	37	15	88669523	88669523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012338.1	-1	reviewed	p.R459W	1.000	425	0%	190	26.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MRPS11	64963	genome.wustl.edu	37	15	89018364	89018364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022839.2	+1	reviewed	p.A102D	0.015	176	0%	89	18%	94	37.2%	possibly_damaging(0.561)	tolerated(0.33)	neutral(0.215)	HMMPfam_Ribosomal_S11,superfamily_Translational machinery components
DET1	55070	genome.wustl.edu	37	15	89074219	89074219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017996.3	-1	validated	p.H251Y	1.000	113	0%	71	16.9%	6	16.6%	benign(0.167)	tolerated(0.16)	neutral(0.074)	HMMPfam_Det1
FANCI	55215	genome.wustl.edu	37	15	89856193	89856193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113378.1	+1	reviewed	p.A1237V	0.017	139	0%	146	15.1%	82	43.9%	benign(0.174)	tolerated(0.12)	neutral(0.277)	NULL
C15orf42	90381	genome.wustl.edu	37	15	90142590	90142590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152259.3	+1	validated	p.R646C	0.984	183	0%	112	21.4%	0	-	probably_damaging(0.977)	tolerated(0.06)	deleterious(0.742)	NULL
KIF7	374654	genome.wustl.edu	37	15	90173546	90173546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198525.2	-1	validated	p.R1097I	1.000	89	0%	92	30.4%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIF7	374654	genome.wustl.edu	37	15	90195922	90195922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198525.2	-1	validated	p.E80D	1.000	66	1.5%	137	29.9%	4	25%	benign(0.027)	tolerated(0.54)	neutral(0.009)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
PLIN1	5346	genome.wustl.edu	37	15	90216567	90216567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145311.1	-1	reviewed	p.T42A	0.851	54	0%	40	12.5%	1	100%	benign(0.004)	tolerated(0.46)	neutral(0.012)	HMMPfam_Perilipin
WDR93	56964	genome.wustl.edu	37	15	90274700	90274700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020212.1	+1	provisional	p.A413T	0.500	222	0%	115	14.8%	1	0%	probably_damaging(1)	tolerated(0.5)	deleterious(0.510)	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
ANPEP	290	genome.wustl.edu	37	15	90340845	90340845	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001150.2	-1	reviewed	p.K706	1.000	181	0%	122	12.3%	5	0%	-	-	-	NULL
ANPEP	290	genome.wustl.edu	37	15	90344377	90344377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001150.2	-1	reviewed	p.R595K	0.000	181	0%	127	16.5%	6	0%	benign(0)	tolerated(0.93)	-	NULL
ANPEP	290	genome.wustl.edu	37	15	90347126	90347126	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001150.2	-1	reviewed	p.W429*	1.000	97	0%	83	21.7%	9	22.2%	-	-	-	HMMPfam_Peptidase_M1,superfamily_SSF55486
ANPEP	290	genome.wustl.edu	37	15	90347777	90347777	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001150.2	-1	reviewed	p.P323	0.999	146	0%	108	16.7%	5	60%	-	-	-	HMMPfam_Peptidase_M1,superfamily_SSF55486
ANPEP	290	genome.wustl.edu	37	15	90348695	90348695	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001150.2	-1	reviewed	e2-1	1.000	173	0%	110	14.5%	0	-	-	-	-	-
ZNF710	374655	genome.wustl.edu	37	15	90622937	90622937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198526.2	+1	validated	p.G624D	0.999	44	0%	47	14.9%	12	25%	benign(0.021)	tolerated(0.07)	neutral(0.320)	NULL
IDH2	3418	genome.wustl.edu	37	15	90628080	90628080	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002168.2	-1	reviewed	p.K413	1.000	101	0%	118	13.6%	659	39.4%	-	-	-	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
SEMA4B	10509	genome.wustl.edu	37	15	90760671	90760671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020210.3	+1	validated	p.G53D	1.000	110	0%	115	16.5%	10	50%	benign(0.031)	tolerated(0.15)	neutral(0.242)	superfamily_Sema domain
SEMA4B	10509	genome.wustl.edu	37	15	90768593	90768593	+	Silent	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020210.3	+1	validated	p.G495	0.048	95	0%	85	27.1%	66	53%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SEMA4B	10509	genome.wustl.edu	37	15	90770880	90770880	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000379122	+1	known	e13+1	0.131	170	0%	149	32.2%	0	-	-	-	-	-
SEMA4B	10509	genome.wustl.edu	37	15	90771449	90771449	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020210.3	+1	validated	p.S696	0.003	257	0%	185	17.3%	134	39.5%	-	-	-	NULL
CIB1	10519	genome.wustl.edu	37	15	90774234	90774234	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006384.3	-1	validated	p.I162	0.323	131	0%	148	21.6%	1162	43.3%	-	-	-	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
C15orf58	390637	genome.wustl.edu	37	15	90785259	90785259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013657.2	+1	validated	p.Q373H	0.044	63	0%	70	31.4%	10	40%	possibly_damaging(0.63)	tolerated(0.09)	deleterious(0.516)	NULL
LOC728477	728477	genome.wustl.edu	37	15	90837583	90837583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343383.1	+1	model	p.E139D	0.084	12	0%	24	29.2%	1	100%	-	-	-	NULL
ZNF774	342132	genome.wustl.edu	37	15	90903743	90903743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004309.2	+1	validated	p.R227I	1.000	90	0%	96	24%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF774	342132	genome.wustl.edu	37	15	90904469	90904469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004309.2	+1	validated	p.R469H	0.000	150	0%	134	14.2%	0	-	benign(0.284)	tolerated(0.19)	neutral(0.137)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BLM	641	genome.wustl.edu	37	15	91292776	91292776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000057.2	+1	reviewed	p.A93D	0.000	169	0%	98	21.4%	6	50%	benign(0.013)	tolerated(0.27)	neutral(0.034)	NULL
BLM	641	genome.wustl.edu	37	15	91298131	91298131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000057.2	+1	reviewed	p.M350I	0.000	346	0.3%	99	16.2%	2	50%	benign(0.001)	tolerated(0.1)	neutral(0.286)	NULL
BLM	641	genome.wustl.edu	37	15	91304401	91304401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000057.2	+1	reviewed	p.L600F	0.035	201	0%	73	13.7%	7	57.1%	benign(0.163)	tolerated(0.69)	neutral(0.017)	NULL
FURIN	5045	genome.wustl.edu	37	15	91420427	91420427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002569.2	+1	reviewed	p.Q188H	1.000	158	0%	217	27.6%	35	54.2%	possibly_damaging(0.892)	tolerated(0.54)	neutral(0.359)	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53
FES	2242	genome.wustl.edu	37	15	91428409	91428409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002005.3	+1	reviewed	p.A45V	0.996	91	0%	70	31.4%	5	80%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMPfam_FCH,HMMSmart_SM00055
FES	2242	genome.wustl.edu	37	15	91428411	91428411	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002005.3	+1	reviewed	p.G46*	0.069	95	0%	71	19.7%	5	0%	-	-	-	HMMPfam_FCH,HMMSmart_SM00055
FES	2242	genome.wustl.edu	37	15	91432628	91432628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002005.3	+1	reviewed	p.R254H	0.850	82	1.2%	76	22.4%	10	80%	possibly_damaging(0.942)	tolerated(0.11)	deleterious(0.659)	NULL
FES	2242	genome.wustl.edu	37	15	91438728	91438728	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002005.3	+1	reviewed	p.Q803	1.000	48	0%	57	31.6%	32	46.8%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MAN2A2	4122	genome.wustl.edu	37	15	91455412	91455412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006122.2	+1	validated	p.A750V	0.001	63	0%	66	19.7%	18	66.6%	benign(0)	tolerated(0.53)	neutral(0.007)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
MAN2A2	4122	genome.wustl.edu	37	15	91455773	91455773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006122.2	+1	validated	p.S783N	1.000	182	0%	167	24%	26	57.6%	benign(0.096)	tolerated(0.25)	neutral(0.044)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
UNC45A	55898	genome.wustl.edu	37	15	91483617	91483617	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018671.3	+1	validated	p.Q201*	1.000	354	0%	330	22.1%	25	8%	-	-	-	superfamily_ARM repeat
LOC100131297	100131297	genome.wustl.edu	37	15	91575637	91575637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343384.1	-1	model	p.R11W	0.950	78	0%	54	20.4%	0	-	-	-	-	NULL
MCTP2	55784	genome.wustl.edu	37	15	94841849	94841849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018349.3	+1	validated	p.D119Y	0.949	64	0%	36	27.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MCTP2	55784	genome.wustl.edu	37	15	94911015	94911015	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018349.3	+1	validated	p.R495*	1.000	68	0%	43	27.9%	0	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
MCTP2	55784	genome.wustl.edu	37	15	95022207	95022207	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018349.3	+1	validated	p.E861*	0.981	94	0%	40	30%	6	33.3%	-	-	-	NULL
ARRDC4	91947	genome.wustl.edu	37	15	98509222	98509222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183376.2	+1	validated	p.R158W	0.914	499	0%	453	16.8%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Arrestin_N,superfamily_E set domains
FAM169B	283777	genome.wustl.edu	37	15	99023948	99023948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182562.2	-1	validated	p.R22I	0.965	363	0.3%	222	17.6%	0	-	benign(0.104)	tolerated(0.21)	neutral(0.052)	NULL
SYNM	23336	genome.wustl.edu	37	15	99653921	99653921	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000336292	+1	known	e3+1	1.000	99	0%	111	20.7%	1	0%	-	-	-	-
SYNM	23336	genome.wustl.edu	37	15	99670115	99670115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000336292	+1	known	p.R516Q	0.000	194	0%	160	21.2%	0	-	benign(0.027)	tolerated(0.74)	neutral(0.003)	NULL
SYNM	23336	genome.wustl.edu	37	15	99670118	99670118	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145728.2	+1	reviewed	p.Q518*	0.000	201	0%	164	32.9%	0	-	benign(0.013)	tolerated(0.37)	neutral(0.019)	NULL
SYNM	23336	genome.wustl.edu	37	15	99670320	99670320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000336292	+1	known	p.Q584H	0.001	248	0%	172	22.7%	0	-	benign(0.07)	deleterious(0)	neutral(0.450)	NULL
SYNM	23336	genome.wustl.edu	37	15	99670759	99670759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000336292	+1	known	p.L731I	0.020	309	0%	198	13.1%	0	-	probably_damaging(0.972)	deleterious(0.02)	deleterious(0.797)	NULL
SYNM	23336	genome.wustl.edu	37	15	99670984	99670984	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000336292	+1	known	p.Q806*	0.004	115	0%	113	16.8%	3	0%	-	-	-	NULL
SYNM	23336	genome.wustl.edu	37	15	99671436	99671436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000336292	+1	known	p.E956D	1.000	105	0%	70	28.6%	0	-	possibly_damaging(0.862)	deleterious(0.04)	deleterious(0.682)	NULL
ADAMTS17	170691	genome.wustl.edu	37	15	100657171	100657171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139057.2	-1	reviewed	p.A590V	0.088	69	0%	53	32.1%	0	-	benign(0.022)	deleterious(0.01)	neutral(0.407)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
CERS3	204219	genome.wustl.edu	37	15	101024826	101024826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178842.3	-1	validated	p.Q112H	1.000	244	0%	114	27.2%	0	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ALDH1A3	220	genome.wustl.edu	37	15	101432769	101432769	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000693.2	+1	reviewed	p.L134	1.000	549	0%	386	21%	1	0%	-	-	-	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
LRRK1	79705	genome.wustl.edu	37	15	101593249	101593249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024652.3	+1	validated	p.R1271H	0.988	49	0%	68	30.9%	2	0%	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LRRK1	79705	genome.wustl.edu	37	15	101606267	101606267	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024652.3	+1	validated	p.C1875	0.000	93	0%	111	25.2%	0	-	-	-	-	NULL
SELS	55829	genome.wustl.edu	37	15	101814874	101814874	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018445.4	-1	reviewed	p.K111Q	0.942	498	0%	667	21.3%	121	32.2%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_Selenoprotein_S
PCSK6	5046	genome.wustl.edu	37	15	101865123	101865123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000331826	-1	known	p.G769E	0.993	59	0%	56	26.8%	0	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	HMMSmart_SM00181,HMMSmart_SM00261,superfamily_Growth factor receptor domain
TARSL2	123283	genome.wustl.edu	37	15	102244072	102244072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152334.2	-1	validated	p.K355R	1.000	323	0%	196	18.9%	0	-	possibly_damaging(0.675)	deleterious(0.01)	deleterious(0.645)	HMMPfam_tRNA_SAD,superfamily_ThrRS/AlaRS common domain
RHBDF1	64285	genome.wustl.edu	37	16	111898	111898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022450.3	-1	validated	p.R369Q	1.000	26	0%	19	21.1%	6	33.3%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
NPRL3	8131	genome.wustl.edu	37	16	143288	143288	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000399953	-1	known	p.G320	1.000	185	0%	135	25.2%	77	42.8%	-	-	-	HMMPfam_UPF0171
NPRL3	8131	genome.wustl.edu	37	16	188249	188249	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000399953	-1	known	p.S6	1.000	40	0%	26	26.9%	6	16.6%	-	-	-	HMMPfam_UPF0171
LUC7L	55692	genome.wustl.edu	37	16	242939	242939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201412.1	-1	validated	p.R255C	0.997	565	0%	439	12.8%	53	7.5%	unknown(0)	tolerated(0.16)	-	HMMPfam_LUC7
ITFG3	83986	genome.wustl.edu	37	16	310059	310059	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000421000	+1	known	p.S88L	0.000	42	0%	50	22%	65	44.6%	-	-	-	NULL
MRPL28	10573	genome.wustl.edu	37	16	418578	418578	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006428.3	-1	reviewed	p.L167	0.989	34	0%	41	29.3%	190	26.3%	-	-	-	superfamily_P53_like_DNA_bnd
TMEM8A	58986	genome.wustl.edu	37	16	425225	425225	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021259.2	-1	validated	p.S449	0.000	122	0%	142	18.3%	109	45.8%	-	-	-	NULL
DECR2	26063	genome.wustl.edu	37	16	457485	457485	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020664.3	+1	validated	p.R88*	0.966	101	0%	138	32.6%	17	29.4%	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
DECR2	26063	genome.wustl.edu	37	16	461488	461488	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020664.3	+1	validated	p.A263	0.000	94	0%	139	18%	26	19.2%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
RAB11FIP3	9727	genome.wustl.edu	37	16	476717	476717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014700.3	+1	validated	p.E237D	0.995	13	0%	18	27.8%	13	46.1%	benign(0.188)	tolerated(0.33)	neutral(0.042)	superfamily_SSF47473
C16orf11	146325	genome.wustl.edu	37	16	615176	615176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145270.1	+1	predicted	p.G529W	0.093	16	0%	16	43.8%	1	0%	possibly_damaging(0.942)	deleterious(0.02)	deleterious(0.770)	NULL
RAB40C	57799	genome.wustl.edu	37	16	677435	677435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021168.4	+1	validated	p.S220N	1.000	148	0%	170	24.1%	33	48.4%	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	HMMPfam_SOCS_box,HMMSmart_SM00253,HMMSmart_SM00176
WFIKKN1	117166	genome.wustl.edu	37	16	681397	681397	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053284.2	+1	reviewed	p.T48	1.000	36	0%	32	21.9%	0	-	-	-	-	HMMPfam_WAP,HMMSmart_WAP,superfamily_WAP
FAM195A	84331	genome.wustl.edu	37	16	698181	698181	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138418.2	+1	predicted	p.S158	1.000	68	0%	86	23.3%	132	43.9%	-	-	-	NULL
WDR90	197335	genome.wustl.edu	37	16	716974	716974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145294.4	+1	provisional	p.A1692T	0.995	398	0%	532	21.6%	48	41.6%	possibly_damaging(0.902)	deleterious(0.03)	deleterious(0.722)	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR90	197335	genome.wustl.edu	37	16	717435	717435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145294.4	+1	provisional	p.C1698Y	0.992	44	0%	61	18%	57	43.8%	possibly_damaging(0.718)	tolerated(0.15)	deleterious(0.501)	HMMSmart_SM00320,superfamily_WD40 repeat-like
RHOT2	89941	genome.wustl.edu	37	16	720488	720488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138769.1	+1	provisional	p.E157D	1.000	75	1.3%	95	18.9%	41	36.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,superfamily_P-loop containing nucleoside triphosphate hydrolases
WDR24	84219	genome.wustl.edu	37	16	735053	735053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032259.2	-1	provisional	p.L715M	0.999	38	0%	44	27.3%	46	26%	benign(0.424)	tolerated(1)	neutral(0.138)	NULL
WDR24	84219	genome.wustl.edu	37	16	736079	736079	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032259.2	-1	provisional	p.P480	0.001	58	0%	71	26.8%	24	33.3%	-	-	-	NULL
NARFL	64428	genome.wustl.edu	37	16	784829	784829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022493.1	-1	provisional	p.S161I	1.000	57	0%	71	11.3%	30	6.6%	unknown(0)	tolerated(0.21)	-	HMMPfam_Fe_hyd_lg_C,superfamily_Fe-only hydrogenase
NARFL	64428	genome.wustl.edu	37	16	787323	787323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022493.1	-1	provisional	p.G57R	0.100	74	0%	115	22.6%	20	50%	benign(0.034)	tolerated(0.11)	neutral(0.274)	NULL
MSLN	10232	genome.wustl.edu	37	16	816099	816099	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013404.4	+1	reviewed	p.D312	0.004	86	0%	106	27.4%	509	51%	-	-	-	HMMPfam_Mesothelin
MSLNL	401827	genome.wustl.edu	37	16	830277	830277	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001025190.1	-1	provisional	p.S242T	0.024	111	0%	100	27%	0	-	unknown(0)	-	-	NULL
CHTF18	63922	genome.wustl.edu	37	16	842501	842501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022092.2	+1	validated	p.Q463H	0.009	24	0.000	9	0.556	11	27.2%	benign(0.003)	tolerated(0.2)	neutral(0.049)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHTF18	63922	genome.wustl.edu	37	16	844143	844143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022092.2	+1	validated	p.R631Q	1.000	18	0%	46	21.7%	33	57.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHTF18	63922	genome.wustl.edu	37	16	846805	846805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022092.2	+1	validated	p.E849K	1.000	22	0%	50	22%	37	48.6%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
CHTF18	63922	genome.wustl.edu	37	16	847886	847886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022092.2	+1	validated	p.A947S	0.998	43	0%	48	27.1%	46	50%	probably_damaging(0.975)	tolerated(0.06)	deleterious(0.740)	NULL
GNG13	51764	genome.wustl.edu	37	16	848769	848769	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016541.2	-1	validated	p.L52	1.000	176	0%	199	20.1%	0	-	-	-	-	HMMPfam_G-gamma,HMMSmart_GGL,superfamily_G-protein_gamma-like
LMF1	64788	genome.wustl.edu	37	16	961006	961006	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022773.2	-1	reviewed	p.L196	0.924	94	0%	118	26.3%	22	36.3%	-	-	-	HMMPfam_DUF1222
LMF1	64788	genome.wustl.edu	37	16	1004389	1004389	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022773.2	-1	reviewed	p.L157	1.000	95	0%	83	22.9%	6	16.6%	-	-	-	NULL
CACNA1H	8912	genome.wustl.edu	37	16	1260918	1260918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021098.2	+1	reviewed	p.K1390N	1.000	69	0%	73	26%	2	0%	possibly_damaging(0.614)	tolerated(0.05)	deleterious(0.558)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1H	8912	genome.wustl.edu	37	16	1269007	1269007	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021098.2	+1	reviewed	p.S1975	0.033	22	0%	31	16.1%	2	0%	-	-	-	NULL
TPSG1	25823	genome.wustl.edu	37	16	1272011	1272011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012467.3	-1	reviewed	p.R248H	0.000	34	0%	27	14.8%	0	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
BAIAP3	8938	genome.wustl.edu	37	16	1384734	1384734	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003933.3	+1	reviewed	p.F24	0.001	19	0%	31	41.9%	0	-	-	-	-	NULL
BAIAP3	8938	genome.wustl.edu	37	16	1398406	1398406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003933.3	+1	reviewed	p.G1163C	1.000	45	0%	45	17.8%	3	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
C16orf42	115939	genome.wustl.edu	37	16	1399449	1399449	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001410.2	-1	validated	p.Q310*	0.255	184	0%	203	13.3%	228	21%	-	-	-	NULL
CLCN7	1186	genome.wustl.edu	37	16	1510487	1510487	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001287.4	-1	reviewed	p.L176	1.000	74	0%	106	22.6%	23	47.8%	-	-	-	superfamily_Cl-channel_core
CLCN7	1186	genome.wustl.edu	37	16	1510939	1510939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001287.4	-1	reviewed	p.T121M	0.913	56	0%	44	18.2%	21	4.7%	possibly_damaging(0.66)	tolerated(0.14)	deleterious(0.483)	superfamily_Cl-channel_core
TELO2	9894	genome.wustl.edu	37	16	1551689	1551689	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016111.3	+1	reviewed	p.E463*	0.048	119	0%	147	32%	18	44.4%	-	-	-	NULL
IFT140	9742	genome.wustl.edu	37	16	1570313	1570313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014714.3	-1	validated	p.T1231M	0.998	128	0%	137	22.6%	34	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
IFT140	9742	genome.wustl.edu	37	16	1573848	1573848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014714.3	-1	validated	p.A1084V	1.000	95	0%	81	33.3%	27	29.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_TPR-like
TMEM204	79652	genome.wustl.edu	37	16	1605000	1605000	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024600.4	+1	provisional	p.D218	1.000	58	0%	52	11.5%	29	0%	-	-	-	NULL
HN1L	90861	genome.wustl.edu	37	16	1741891	1741891	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144570.2	+1	validated	p.R81*	0.164	140	0%	193	18.1%	55	3.6%	-	-	-	NULL
MAPK8IP3	23162	genome.wustl.edu	37	16	1779187	1779187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015133.3	+1	reviewed	p.A163V	1.000	217	0%	226	19.5%	4	25%	possibly_damaging(0.764)	tolerated(0.17)	neutral(0.342)	HMMPfam_Jnk-SapK_ap_N
MAPK8IP3	23162	genome.wustl.edu	37	16	1798673	1798673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015133.3	+1	reviewed	p.A389T	0.999	133	0%	145	13.1%	5	0%	benign(0.039)	tolerated(0.08)	neutral(0.302)	NULL
MAPK8IP3	23162	genome.wustl.edu	37	16	1816243	1816243	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015133.3	+1	reviewed	p.N883	0.947	29	0%	39	15.4%	5	60%	-	-	-	NULL
EME2	197342	genome.wustl.edu	37	16	1826099	1826099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010865.1	+1	provisional	p.R399C	0.698	4	0.000	12	0.500	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NUBP2	10101	genome.wustl.edu	37	16	1837791	1837791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012225.2	+1	validated	p.P150S	0.010	21	0%	29	27.6%	138	35.5%	benign(0.001)	tolerated(0.79)	neutral(0.001)	HMMPfam_ParA,superfamily_SSF52540
NUBP2	10101	genome.wustl.edu	37	16	1837815	1837815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012225.2	+1	validated	p.V158M	0.029	30	0%	30	23.3%	124	41.1%	benign(0.123)	tolerated(0.13)	neutral(0.263)	HMMPfam_ParA,superfamily_SSF52540
TBL3	10607	genome.wustl.edu	37	16	2025077	2025077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006453.2	+1	reviewed	p.A205T	0.001	31	0%	39	23.1%	66	50%	benign(0.001)	tolerated(0.48)	neutral(0.011)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
TBL3	10607	genome.wustl.edu	37	16	2027399	2027399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006453.2	+1	reviewed	p.V572M	1.000	63	0%	99	20.2%	135	38.5%	possibly_damaging(0.808)	deleterious(0.01)	deleterious(0.710)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
ZNF598	90850	genome.wustl.edu	37	16	2048813	2048813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000431526	-1	known	p.E751K	0.997	112	0%	107	22.4%	20	40%	probably_damaging(0.987)	tolerated(0.18)	deleterious(0.492)	NULL
ZNF598	90850	genome.wustl.edu	37	16	2050393	2050393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000431526	-1	known	p.G431C	0.107	108	0%	127	22%	30	50%	possibly_damaging(0.573)	deleterious(0.05)	deleterious(0.542)	NULL
ZNF598	90850	genome.wustl.edu	37	16	2052284	2052284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000431526	-1	known	p.S273N	1.000	20	0%	29	24.1%	25	36%	benign(0.078)	tolerated(0.53)	neutral(0.013)	NULL
SLC9A3R2	9351	genome.wustl.edu	37	16	2079703	2079703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130012.1	+1	validated	p.L112I	0.880	46	0%	41	17.1%	75	21.3%	benign(0)	tolerated(0.27)	neutral(0.034)	superfamily_PDZ domain-like
TSC2	7249	genome.wustl.edu	37	16	2111888	2111888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000548.3	+1	reviewed	p.E379G	1.000	166	0%	169	28.4%	10	40%	possibly_damaging(0.948)	tolerated(0.15)	deleterious(0.632)	superfamily_ARM repeat
PKD1	5310	genome.wustl.edu	37	16	2142505	2142505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009944.2	-1	reviewed	p.L3749M	0.956	23	0%	33	33.3%	12	25%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_PKD_channel
PKD1	5310	genome.wustl.edu	37	16	2150071	2150071	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009944.2	-1	reviewed	p.S3238	0.979	24	0%	27	25.9%	10	20%	-	-	-	NULL
PKD1	5310	genome.wustl.edu	37	16	2150455	2150455	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009944.2	-1	reviewed	p.I3170	0.742	123	0%	136	25.7%	4	25%	-	-	-	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
PKD1	5310	genome.wustl.edu	37	16	2158298	2158298	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009944.2	-1	reviewed	p.D2290	1.000	27	0%	35	31.4%	3	33.3%	-	-	-	HMMPfam_REJ
PKD1	5310	genome.wustl.edu	37	16	2158614	2158614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009944.2	-1	reviewed	p.Y2185C	1.000	17	0%	11	45.5%	2	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_REJ
PKD1	5310	genome.wustl.edu	37	16	2160621	2160621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009944.2	-1	reviewed	p.A1516V	0.060	42	0%	48	31.2%	3	66.6%	benign(0.008)	tolerated(0.27)	neutral(0.034)	HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain
PKD1	5310	genome.wustl.edu	37	16	2164302	2164302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009944.2	-1	reviewed	p.V908M	0.000	37	0%	47	21.3%	1	100%	benign(0.007)	tolerated(0.16)	neutral(0.059)	NULL
TRAF7	84231	genome.wustl.edu	37	16	2225514	2225514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032271.2	+1	validated	p.V506A	1.000	78	0%	118	15.3%	109	14.6%	possibly_damaging(0.643)	tolerated(0.55)	neutral(0.233)	superfamily_WD40 repeat-like
CASKIN1	57524	genome.wustl.edu	37	16	2234976	2234976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020764.3	-1	validated	p.A434T	0.001	56	0%	59	37.3%	0	-	benign(0.104)	tolerated(0.06)	neutral(0.331)	NULL
CASKIN1	57524	genome.wustl.edu	37	16	2235360	2235360	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020764.3	-1	validated	p.S366	0.378	52	0%	78	20.5%	0	-	-	-	-	superfamily_SH3
E4F1	1877	genome.wustl.edu	37	16	2284212	2284212	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004424.3	+1	reviewed	p.F472	1.000	17	0%	24	33.3%	43	48.8%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ECI1	1632	genome.wustl.edu	37	16	2293392	2293392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001919.3	-1	reviewed	p.R164S	0.999	57	0%	55	34.5%	440	45.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ECH,superfamily_ClpP/crotonase
ECI1	1632	genome.wustl.edu	37	16	2294455	2294455	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001919.3	-1	reviewed	p.L131	1.000	36	0%	39	25.6%	293	46.4%	-	-	-	HMMPfam_ECH,superfamily_ClpP/crotonase
RNPS1	10921	genome.wustl.edu	37	16	2314307	2314307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006711.2	-1	reviewed	p.D33Y	1.000	482	0%	527	25.2%	145	45.5%	unknown(0)	deleterious(0)	-	NULL
ABCA3	21	genome.wustl.edu	37	16	2338040	2338040	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001089.2	-1	reviewed	p.P997	0.016	39	0%	45	37.8%	7	57.1%	-	-	-	NULL
TBC1D24	57465	genome.wustl.edu	37	16	2547077	2547077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020705.1	+1	provisional	p.A310T	0.992	26	0%	35	28.6%	11	54.5%	possibly_damaging(0.909)	tolerated(0.26)	neutral(0.396)	NULL
TBC1D24	57465	genome.wustl.edu	37	16	2548380	2548380	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020705.1	+1	provisional	p.H369	0.185	76	0%	87	19.5%	8	50%	-	-	-	HMMPfam_TLD,HMMSmart_TLDc
PRSS27	83886	genome.wustl.edu	37	16	2763673	2763673	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031948.3	-1	validated	p.Q179*	1.000	364	0%	373	31.4%	4	25%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
SRRM2	23524	genome.wustl.edu	37	16	2812657	2812657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016333.3	+1	validated	p.R710C	0.941	141	0%	84	15.5%	21	42.8%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2812676	2812676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016333.3	+1	validated	p.R716I	1.000	153	0%	93	14%	24	16.6%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2816494	2816494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016333.3	+1	validated	p.V1989I	0.771	88	0%	87	16.1%	102	36.2%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2817541	2817541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016333.3	+1	validated	p.L2338M	0.998	81	0%	106	18.9%	157	33.7%	probably_damaging(0.998)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2819124	2819124	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016333.3	+1	validated	p.S2620	0.413	282	0%	371	19.4%	204	44.1%	-	-	-	NULL
PRSS21	10942	genome.wustl.edu	37	16	2871427	2871427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006799.2	+1	reviewed	p.V256M	0.994	133	0%	153	17.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
MEFV	4210	genome.wustl.edu	37	16	3304288	3304288	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000243.2	-1	reviewed	p.L260	0.003	176	0%	262	23.7%	0	-	-	-	-	NULL
ZNF174	7727	genome.wustl.edu	37	16	3458428	3458428	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003450.2	+1	validated	p.Q245*	0.996	101	0%	66	16.7%	11	27.2%	-	-	-	NULL
NAA60	79903	genome.wustl.edu	37	16	3533571	3533571	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083600.1	+1	validated	p.N182	0.461	353	0%	331	26.9%	55	43.6%	-	-	-	superfamily_Acyl_CoA_acyltransferase
CLUAP1	23059	genome.wustl.edu	37	16	3586221	3586221	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015041.1	+1	provisional	p.R398*	0.004	311	0%	170	12.9%	77	28.5%	-	-	-	NULL
NLRC3	197358	genome.wustl.edu	37	16	3614571	3614571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178844.2	-1	validated	p.A123T	0.000	5	0.000	7	0.571	1	0%	benign(0)	tolerated(0.73)	neutral(0.002)	NULL
SLX4	84464	genome.wustl.edu	37	16	3658509	3658509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032444.2	-1	provisional	p.L153I	0.000	322	0%	431	23.9%	2	50%	probably_damaging(0.984)	-	-	NULL
CREBBP	1387	genome.wustl.edu	37	16	3778099	3778099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004380.2	-1	reviewed	p.Q2317K	1.000	142	0%	173	23.7%	49	10.2%	unknown(0)	deleterious(0.01)	-	NULL
CREBBP	1387	genome.wustl.edu	37	16	3778624	3778624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004380.2	-1	reviewed	p.L2142M	0.994	113	0%	51	17.6%	17	35.2%	benign(0.001)	tolerated(0.77)	neutral(0.001)	NULL
CREBBP	1387	genome.wustl.edu	37	16	3781241	3781241	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004380.2	-1	reviewed	p.N1708	0.780	44	0%	69	23.2%	20	40%	-	-	-	HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1
CREBBP	1387	genome.wustl.edu	37	16	3789608	3789608	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004380.2	-1	reviewed	p.Y1417*	0.102	173	0%	153	15%	13	23%	-	-	-	HMMPfam_DUF906
CREBBP	1387	genome.wustl.edu	37	16	3807984	3807984	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004380.2	-1	reviewed	p.G1145	1.000	192	0%	156	30.1%	6	16.6%	-	-	-	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
CREBBP	1387	genome.wustl.edu	37	16	3820878	3820878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004380.2	-1	reviewed	p.P858L	1.000	242	0%	132	12.1%	11	27.2%	probably_damaging(0.999)	tolerated(0.46)	deleterious(0.502)	NULL
CREBBP	1387	genome.wustl.edu	37	16	3900364	3900364	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004380.2	-1	reviewed	p.T244	0.228	131	0%	97	21.6%	5	80%	-	-	-	NULL
SRL	6345	genome.wustl.edu	37	16	4242595	4242595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098814.1	-1	validated	p.E327D	1.000	224	0%	154	22.7%	0	-	probably_damaging(0.983)	tolerated(0.43)	neutral(0.443)	superfamily_SSF52540
SRL	6345	genome.wustl.edu	37	16	4242609	4242609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098814.1	-1	validated	p.E323K	1.000	232	0%	168	22%	0	-	probably_damaging(0.994)	tolerated(0.15)	deleterious(0.693)	superfamily_SSF52540
SRL	6345	genome.wustl.edu	37	16	4292027	4292027	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098814.1	-1	validated	p.L14	0.976	69	0%	49	20.4%	0	-	-	-	-	NULL
CORO7	79585	genome.wustl.edu	37	16	4411087	4411087	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024535.3	-1	validated	e19-1	1.000	124	0%	181	24.9%	2	50%	-	-	-	-
VASN	114990	genome.wustl.edu	37	16	4432888	4432888	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138440.2	+1	validated	p.K670	0.812	18	0%	20	25%	123	39%	-	-	-	NULL
DNAJA3	9093	genome.wustl.edu	37	16	4492295	4492295	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005147.4	+1	validated	p.Q219H	0.918	191	0.5%	104	17.3%	55	36.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NUDT16L1	84309	genome.wustl.edu	37	16	4745048	4745048	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032349.2	+1	provisional	p.T168	0.144	59	0%	76	11.8%	57	31.5%	-	-	-	NULL
ANKS3	124401	genome.wustl.edu	37	16	4777133	4777133	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133450.2	-1	provisional	p.P72	0.876	82	0%	73	20.5%	9	22.2%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
C16orf71	146562	genome.wustl.edu	37	16	4790427	4790427	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139170.2	+1	validated	p.E184*	0.020	59	0%	43	18.6%	0	-	-	-	-	NULL
C16orf71	146562	genome.wustl.edu	37	16	4790495	4790495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139170.2	+1	validated	p.M206I	1.000	69	0%	59	22%	3	100%	possibly_damaging(0.444)	deleterious(0)	deleterious(0.590)	NULL
ZNF500	26048	genome.wustl.edu	37	16	4810568	4810568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021646.1	-1	validated	p.V229M	0.973	110	0%	118	16.1%	3	0%	benign(0.01)	tolerated(1)	neutral(0.001)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
GLYR1	84656	genome.wustl.edu	37	16	4864541	4864541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032569.3	-1	validated	p.K338N	1.000	103	0%	64	28.1%	42	35.7%	possibly_damaging(0.773)	tolerated(0.06)	deleterious(0.610)	HMMPfam_NAD_binding_2,superfamily_NAD(P)-binding Rossmann-fold domains
UBN1	29855	genome.wustl.edu	37	16	4920314	4920314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001079514.1	+1	validated	p.R428H	1.000	155	0%	110	24.5%	7	28.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PPL	5493	genome.wustl.edu	37	16	4933518	4933518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002705.4	-1	reviewed	p.R1713M	1.000	163	0%	203	24.6%	39	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00250,superfamily_Plakin repeat
PPL	5493	genome.wustl.edu	37	16	4939015	4939015	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002705.4	-1	reviewed	p.I787	0.907	356	0%	423	21.5%	18	50%	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
PPL	5493	genome.wustl.edu	37	16	4940288	4940288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002705.4	-1	reviewed	p.R737H	0.001	208	0%	195	23.6%	22	50%	benign(0.002)	deleterious(0.03)	neutral(0.364)	HMMSmart_SM00150,superfamily_Spectrin repeat
PPL	5493	genome.wustl.edu	37	16	4945323	4945323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002705.4	-1	reviewed	p.R394H	1.000	48	2.1%	49	34.7%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00150,superfamily_Spectrin repeat
PPL	5493	genome.wustl.edu	37	16	4960860	4960860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002705.4	-1	reviewed	p.K51N	1.000	131	0%	111	26.1%	9	44.4%	benign(0.111)	tolerated(0.1)	neutral(0.295)	NULL
C16orf89	146556	genome.wustl.edu	37	16	5094387	5094387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098514.1	-1	validated	p.P388T	0.000	159	0%	120	14.2%	0	-	unknown(0)	tolerated(0.08)	-	NULL
C16orf89	146556	genome.wustl.edu	37	16	5094426	5094426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098514.1	-1	validated	p.L375I	0.998	82	0%	71	9.9%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
C16orf89	146556	genome.wustl.edu	37	16	5105260	5105260	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152459.3	-1	validated	p.C323*	1.000	61	0%	60	15%	1	100%	-	-	-	NULL
RBFOX1	54715	genome.wustl.edu	37	16	7637259	7637259	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145891.2	+1	reviewed	p.K162T	1.000	264	0%	72	18.1%	0	-	benign(0.104)	tolerated(0.12)	neutral(0.269)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ENSG00000078328	0	genome.wustl.edu	37	16	7759118	7759118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000355637	+1	known	p.T391M	1.000	345	0%	180	22.8%	0	-	unknown(0)	deleterious(0)	-	NULL
GRIN2A	2903	genome.wustl.edu	37	16	9857785	9857785	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000833.3	-1	reviewed	p.R1206*	0.961	384	0.3%	115	16.5%	0	-	-	-	-	HMMPfam_NMDAR2_C
GRIN2A	2903	genome.wustl.edu	37	16	9916222	9916222	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000833.3	-1	reviewed	p.S689	1.000	457	0%	89	12.4%	0	-	-	-	-	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
CIITA	4261	genome.wustl.edu	37	16	11001575	11001575	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000246.3	+1	reviewed	p.R742	0.998	81	0%	72	25%	27	22.2%	-	-	-	NULL
CLEC16A	23274	genome.wustl.edu	37	16	11217663	11217663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015226.2	+1	validated	p.A778V	0.914	204	0%	135	17%	11	36.3%	benign(0.183)	tolerated(0.16)	neutral(0.076)	NULL
CLEC16A	23274	genome.wustl.edu	37	16	11260294	11260294	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000261657	+1	known	p.L89I	0.962	95	0%	87	25.3%	8	12.5%	-	-	-	NULL
ZC3H7A	29066	genome.wustl.edu	37	16	11858937	11858937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014153.2	-1	provisional	p.V598I	0.997	307	0%	163	22.7%	15	40%	benign(0.004)	tolerated(0.25)	neutral(0.037)	NULL
ZC3H7A	29066	genome.wustl.edu	37	16	11859352	11859352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014153.2	-1	provisional	p.L571P	1.000	89	0%	39	23.1%	10	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RSL1D1	26156	genome.wustl.edu	37	16	11931872	11931872	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015659.2	-1	validated	p.T415	0.968	431	0%	350	17.7%	220	48.1%	-	-	-	NULL
SNX29	92017	genome.wustl.edu	37	16	12140288	12140288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032167.2	+1	validated	p.S159I	1.000	792	0%	586	23.4%	1	0%	probably_damaging(0.993)	deleterious(0.05)	deleterious(0.795)	HMMPfam_RUN,HMMSmart_SM00593
PARN	5073	genome.wustl.edu	37	16	14530583	14530583	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002582.2	-1	reviewed	p.D637	1.000	285	0%	112	16.1%	25	16%	-	-	-	NULL
BFAR	51283	genome.wustl.edu	37	16	14755867	14755867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016561.2	+1	validated	p.T301I	1.000	418	0%	138	25.4%	43	30.2%	benign(0.037)	deleterious(0)	neutral(0.447)	NULL
BFAR	51283	genome.wustl.edu	37	16	14761499	14761499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016561.2	+1	validated	p.P390S	1.000	240	0%	84	27.4%	36	44.4%	possibly_damaging(0.794)	deleterious(0)	deleterious(0.742)	NULL
NOMO1	23420	genome.wustl.edu	37	16	14956953	14956953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014287.3	+1	reviewed	p.S435Y	0.017	935	0%	307	11.1%	21	0%	benign(0.313)	tolerated(0.08)	neutral(0.397)	NULL
NOMO1	23420	genome.wustl.edu	37	16	14968980	14968980	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014287.3	+1	reviewed	p.I714	0.960	741	0.1%	192	13%	43	11.6%	-	-	-	NULL
NTAN1	123803	genome.wustl.edu	37	16	15131982	15131982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173474.2	-1	provisional	p.S280F	1.000	295	0%	242	25.6%	26	23%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
RRN3	54700	genome.wustl.edu	37	16	15157138	15157138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018427.3	-1	validated	p.S570L	0.994	256	0%	275	21.5%	29	48.2%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_RRN3
LOC100287779	100287779	genome.wustl.edu	37	16	15224239	15224239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343450.1	+1	model	p.G55R	1.000	65	0%	43	20.9%	6	16.6%	-	-	-	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15728715	15728715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014647.3	-1	validated	p.P302H	1.000	875	0%	621	22.4%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
NDE1	54820	genome.wustl.edu	37	16	15785144	15785144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143979.1	+1	reviewed	p.S223G	0.027	78	0%	26	26.9%	33	42.4%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_NUDE_C
MYH11	4629	genome.wustl.edu	37	16	15814155	15814155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040114.1	-1	reviewed	p.E1609D	1.000	227	0%	184	19.6%	46	0%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Myosin_tail_1
MYH11	4629	genome.wustl.edu	37	16	15820885	15820885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040114.1	-1	reviewed	p.K1233N	1.000	153	0%	137	20.4%	30	3.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Myosin_tail_1
MYH11	4629	genome.wustl.edu	37	16	15847352	15847352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040114.1	-1	reviewed	p.A595V	0.997	342	0.3%	229	22.7%	32	0%	benign(0.094)	tolerated(0.06)	neutral(0.330)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH11	4629	genome.wustl.edu	37	16	15931817	15931817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040114.1	-1	reviewed	p.E98G	1.000	588	0%	236	12.3%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
FOPNL	123811	genome.wustl.edu	37	16	15973712	15973712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144600.2	-1	provisional	p.Q87R	0.966	237	0%	181	24.3%	26	42.3%	benign(0.013)	tolerated(0.6)	neutral(0.005)	NULL
ABCC1	4363	genome.wustl.edu	37	16	16139844	16139844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004996.3	+1	reviewed	p.A398T	1.000	288	0.3%	87	21.8%	14	42.8%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC6	368	genome.wustl.edu	37	16	16308295	16308295	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001171.5	-1	reviewed	p.S162	0.001	167	0%	99	24.2%	0	-	-	-	-	NULL
XYLT1	64131	genome.wustl.edu	37	16	17353134	17353134	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022166.3	-1	reviewed	p.F208	0.786	181	0%	87	12.6%	0	-	-	-	-	NULL
XYLT1	64131	genome.wustl.edu	37	16	17353261	17353261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022166.3	-1	reviewed	p.S166N	1.000	433	0%	201	21.4%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
ABCC6P1	653190	genome.wustl.edu	37	16	18602474	18602474	+	RNA	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_003569.1	+1	provisional	NULL	0.001	192	0%	100	12%	0	-	benign(0.368)	tolerated(0.82)	neutral(0.118)	-
ARL6IP1	23204	genome.wustl.edu	37	16	18805987	18805987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015161.1	-1	provisional	p.V143I	0.963	249	0%	223	14.8%	216	46.7%	benign(0)	tolerated(0.96)	-	HMMPfam_Reticulon
ARL6IP1	23204	genome.wustl.edu	37	16	18806804	18806804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015161.1	-1	provisional	p.K130N	1.000	326	0%	347	23.1%	197	46.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Reticulon
SMG1	23049	genome.wustl.edu	37	16	18823365	18823365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015092.4	-1	reviewed	p.T3569I	1.000	385	0%	266	22.6%	14	21.4%	benign(0.057)	deleterious(0.02)	neutral(0.387)	NULL
SMG1	23049	genome.wustl.edu	37	16	18861670	18861670	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015092.4	-1	reviewed	p.S1724	0.993	314	0%	160	20%	2	50%	-	-	-	superfamily_ARM repeat
SMG1	23049	genome.wustl.edu	37	16	18893661	18893661	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015092.4	-1	reviewed	e10-1	1.000	61	0%	28	17.9%	0	-	-	-	-	-
TMC7	79905	genome.wustl.edu	37	16	19070781	19070781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024847.3	+1	validated	p.R691W	1.000	302	0%	164	14%	3	33.3%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	NULL
COQ7	10229	genome.wustl.edu	37	16	19088643	19088643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016138.3	+1	reviewed	p.R175W	1.000	439	0%	369	21.7%	27	51.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COQ7,superfamily_Ferritin-like
TMC5	79838	genome.wustl.edu	37	16	19498340	19498340	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105248.1	+1	validated	p.N813H	1.000	476	0%	171	24.6%	33	63.6%	possibly_damaging(0.795)	deleterious(0.01)	deleterious(0.704)	HMMPfam_TMC
CCP110	9738	genome.wustl.edu	37	16	19543830	19543830	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014711.4	+1	validated	p.L78	0.996	365	0%	213	21.1%	3	66.6%	-	-	-	NULL
CCP110	9738	genome.wustl.edu	37	16	19548609	19548609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014711.4	+1	validated	p.E540K	0.999	215	0%	104	19.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C16orf62	57020	genome.wustl.edu	37	16	19580865	19580865	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020314.4	+1	predicted	p.L79	0.997	57	0%	37	24.3%	8	25%	-	-	-	NULL
C16orf62	57020	genome.wustl.edu	37	16	19592878	19592878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020314.4	+1	predicted	p.Q181P	1.000	271	0%	113	14.2%	13	15.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
C16orf62	57020	genome.wustl.edu	37	16	19627504	19627504	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020314.4	+1	predicted	p.T364	0.811	235	0%	131	23.7%	9	44.4%	-	-	-	NULL
C16orf62	57020	genome.wustl.edu	37	16	19628009	19628009	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020314.4	+1	predicted	p.I368S	1.000	356	0.3%	154	19.5%	9	33.3%	possibly_damaging(0.703)	deleterious(0)	deleterious(0.697)	NULL
GPRC5B	51704	genome.wustl.edu	37	16	19883174	19883174	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016235.1	-1	reviewed	p.E332*	1.000	83	0%	94	20.2%	8	0%	-	-	-	NULL
GPRC5B	51704	genome.wustl.edu	37	16	19883399	19883399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016235.1	-1	reviewed	p.G257S	1.000	160	0%	196	28.6%	4	50%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_7tm_3
GP2	2813	genome.wustl.edu	37	16	20329677	20329677	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007240.1	-1	validated	p.T364	0.000	322	0%	95	20%	0	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_SM00241
ACSM5	54988	genome.wustl.edu	37	16	20451737	20451737	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017888.2	+1	validated	p.E576	1.000	219	0%	75	14.7%	1	0%	-	-	-	superfamily_Acetyl-CoA synthetase-like
ACSM2A	123876	genome.wustl.edu	37	16	20480841	20480841	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010845.2	+1	validated	p.I132	0.960	611	0%	277	20.9%	0	-	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM2B	348158	genome.wustl.edu	37	16	20557739	20557739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105069.1	-1	validated	p.A386T	0.010	834	0%	405	18.3%	0	-	benign(0.044)	tolerated(0.06)	neutral(0.325)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM1	116285	genome.wustl.edu	37	16	20696643	20696643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052956.2	-1	validated	p.G92E	0.000	377	0.3%	158	17.7%	1	0%	possibly_damaging(0.688)	deleterious(0.03)	deleterious(0.611)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
THUMPD1	55623	genome.wustl.edu	37	16	20748359	20748359	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017736.3	-1	validated	p.E302V	0.564	910	0%	762	19.3%	11	54.5%	benign(0.039)	deleterious(0.04)	neutral(0.351)	NULL
LYRM1	57149	genome.wustl.edu	37	16	20927016	20927016	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128301.1	+1	validated	p.L47	0.753	160	0%	77	14.3%	29	37.9%	-	-	-	HMMPfam_Complex1_LYR
DNAH3	55567	genome.wustl.edu	37	16	20955961	20955961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017539.1	-1	provisional	p.L3790I	0.648	322	0.3%	77	19.5%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Dynein_heavy
DNAH3	55567	genome.wustl.edu	37	16	20994199	20994199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017539.1	-1	provisional	p.P2568Q	1.000	175	0.6%	161	22.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	20996802	20996802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017539.1	-1	provisional	p.R2421H	1.000	148	0.7%	135	17.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	20998728	20998728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017539.1	-1	provisional	p.R2309W	1.000	327	0%	381	15.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	20999364	20999364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017539.1	-1	provisional	p.I2209V	1.000	404	0%	435	20.2%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	21151972	21151972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017539.1	-1	provisional	p.S194Y	0.001	473	0%	182	18.7%	0	-	benign(0.062)	deleterious(0.01)	neutral(0.410)	NULL
TMEM159	57146	genome.wustl.edu	37	16	21181817	21181817	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020422.4	+1	validated	p.A52	0.554	902	0%	489	25.4%	16	31.2%	-	-	-	NULL
TMEM159	57146	genome.wustl.edu	37	16	21185363	21185363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020422.4	+1	validated	p.L100I	0.546	457	0%	216	23.1%	19	31.5%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ZP2	7783	genome.wustl.edu	37	16	21208892	21208892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003460.1	-1	reviewed	p.A716D	0.000	241	0%	62	24.2%	0	-	possibly_damaging(0.736)	deleterious(0)	deleterious(0.714)	NULL
ZP2	7783	genome.wustl.edu	37	16	21212784	21212784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003460.1	-1	reviewed	p.D534N	0.701	392	0%	123	23.6%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1
ZP2	7783	genome.wustl.edu	37	16	21215425	21215425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003460.1	-1	reviewed	p.H300Y	0.001	391	0%	111	19.8%	0	-	benign(0.009)	deleterious(0.01)	neutral(0.406)	NULL
CRYM	1428	genome.wustl.edu	37	16	21289496	21289496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001888.3	-1	reviewed	p.P26H	0.995	49	0%	69	17.4%	1	0%	possibly_damaging(0.49)	tolerated(0.47)	neutral(0.174)	HMMPfam_OCD_Mu_crystall,superfamily_NAD(P)-binding Rossmann-fold domains
OTOA	146183	genome.wustl.edu	37	16	21728344	21728344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144672.3	+1	reviewed	p.K535N	0.929	292	0.3%	89	20.2%	0	-	probably_damaging(0.97)	deleterious(0.02)	deleterious(0.795)	NULL
OTOA	146183	genome.wustl.edu	37	16	21739682	21739682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144672.3	+1	reviewed	p.L713I	0.590	105	0%	38	23.7%	0	-	probably_damaging(0.976)	tolerated(0.23)	neutral(0.459)	NULL
OTOA	146183	genome.wustl.edu	37	16	21742163	21742163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144672.3	+1	reviewed	p.P738H	0.960	432	0.2%	132	24.2%	0	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
UQCRC2	7385	genome.wustl.edu	37	16	21994466	21994466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003366.2	+1	validated	p.H446Y	0.995	299	0.3%	124	25.8%	365	41.6%	benign(0.01)	tolerated(0.05)	neutral(0.346)	superfamily_LuxS/MPP-like metallohydrolase
VWA3A	146177	genome.wustl.edu	37	16	22144301	22144301	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173615.3	+1	validated	p.E651	0.672	70	0%	32	15.6%	0	-	-	-	-	superfamily_vWA-like
VWA3A	146177	genome.wustl.edu	37	16	22149729	22149729	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173615.3	+1	validated	p.G730*	0.006	233	0.4%	100	20%	2	50%	-	-	-	NULL
EEF2K	29904	genome.wustl.edu	37	16	22237147	22237147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013302.3	+1	reviewed	p.D33N	0.961	114	0%	62	16.1%	9	66.6%	possibly_damaging(0.683)	tolerated(0.07)	deleterious(0.562)	NULL
EEF2K	29904	genome.wustl.edu	37	16	22268994	22268994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013302.3	+1	reviewed	p.S311Y	1.000	200	0%	104	18.3%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Alpha_kinase,HMMSmart_Alpha_kinase,superfamily_Kinase_like
POLR3E	55718	genome.wustl.edu	37	16	22319510	22319510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000418581	+1	known	p.R4H	0.060	141	0%	118	15.3%	25	36%	-	-	-	HMMPfam_Sin_N
POLR3E	55718	genome.wustl.edu	37	16	22337521	22337521	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018119.2	+1	validated	p.H596	0.707	25	0%	14	35.7%	37	37.8%	-	-	-	NULL
USP31	57478	genome.wustl.edu	37	16	23080567	23080567	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020718.3	-1	validated	p.S953	0.000	130	0%	102	22.5%	2	0%	-	-	-	NULL
SCNN1G	6340	genome.wustl.edu	37	16	23197692	23197692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039.3	+1	reviewed	p.L34I	0.381	66	0%	54	18.5%	3	100%	possibly_damaging(0.454)	tolerated(0.14)	neutral(0.398)	HMMPfam_ASC
GGA2	23062	genome.wustl.edu	37	16	23480255	23480255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015044.4	-1	reviewed	p.M561I	0.967	224	0%	97	14.4%	72	13.8%	benign(0.005)	tolerated(0.22)	neutral(0.042)	HMMPfam_Alpha_adaptinC2,HMMSmart_Alpha_adaptinC2,superfamily_Clath_adapt
UBFD1	56061	genome.wustl.edu	37	16	23578376	23578376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019116.2	+1	validated	p.D269N	1.000	174	0%	129	24%	31	54.8%	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	NULL
PALB2	79728	genome.wustl.edu	37	16	23625326	23625326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024675.3	-1	reviewed	p.M1067T	1.000	338	0%	220	24.1%	16	31.2%	benign(0)	tolerated(0.34)	neutral(0.023)	superfamily_WD40_like
PALB2	79728	genome.wustl.edu	37	16	23646995	23646995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024675.3	-1	reviewed	p.A291V	0.021	173	0%	132	22%	1	0%	benign(0.009)	tolerated(0.46)	neutral(0.013)	NULL
ERN2	10595	genome.wustl.edu	37	16	23706143	23706143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033266.3	-1	validated	p.A717V	0.006	77	0%	51	15.7%	1	0%	benign(0)	tolerated(0.64)	neutral(0.003)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CACNG3	10368	genome.wustl.edu	37	16	24373001	24373001	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006539.2	+1	reviewed	p.H255	1.000	279	0%	116	29.3%	0	-	-	-	-	NULL
RBBP6	5930	genome.wustl.edu	37	16	24580685	24580685	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006910.4	+1	reviewed	p.R892*	1.000	164	0%	164	18.9%	6	16.6%	-	-	-	NULL
RBBP6	5930	genome.wustl.edu	37	16	24583226	24583226	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006910.4	+1	reviewed	p.K1613	1.000	210	0%	254	20.5%	23	21.7%	-	-	-	NULL
FLJ45256	400511	genome.wustl.edu	37	16	24674683	24674683	+	RNA	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_041134.1	-1	model	NULL	0.001	30	0%	21	19%	0	-	-	-	-	-
TNRC6A	27327	genome.wustl.edu	37	16	24801346	24801346	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014494.2	+1	reviewed	p.T461	1.000	144	0%	52	21.2%	1	0%	-	-	-	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24801529	24801529	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014494.2	+1	reviewed	p.W522*	1.000	265	0%	119	12.6%	2	0%	-	-	-	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24816352	24816352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014494.2	+1	reviewed	p.M1334I	1.000	322	0%	125	24%	2	50%	benign(0.012)	tolerated(0.16)	neutral(0.060)	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24829957	24829957	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000450465	+1	known	p.L563M	1.000	418	0.2%	170	27.1%	14	57.1%	-	-	-	NULL
SLC5A11	115584	genome.wustl.edu	37	16	24902339	24902339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052944.2	+1	provisional	p.P272S	1.000	136	0%	55	27.3%	0	-	possibly_damaging(0.639)	deleterious(0.04)	deleterious(0.573)	HMMPfam_SSF
ARHGAP17	55114	genome.wustl.edu	37	16	24931497	24931497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001006634.1	-1	validated	p.R867H	0.996	533	0%	295	14.2%	107	24.2%	possibly_damaging(0.923)	tolerated(0.67)	neutral(0.375)	NULL
JMJD5	79831	genome.wustl.edu	37	16	27225022	27225022	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145348.1	+1	reviewed	p.P243	0.163	146	0%	98	22.4%	3	0%	-	-	-	superfamily_SSF51197
JMJD5	79831	genome.wustl.edu	37	16	27230432	27230432	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145348.1	+1	reviewed	e6+1	1.000	187	0%	123	13.8%	0	-	-	-	-	-
IL4R	3566	genome.wustl.edu	37	16	27357805	27357805	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000418.2	+1	reviewed	p.G127*	0.000	127	0%	87	21.8%	19	15.7%	-	-	-	superfamily_Fibronectin type III
GTF3C1	2975	genome.wustl.edu	37	16	27472809	27472809	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001520.3	-1	validated	p.P2064	0.033	42	0%	34	26.5%	100	45%	-	-	-	NULL
GTF3C1	2975	genome.wustl.edu	37	16	27506720	27506720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001520.3	-1	validated	p.P815H	1.000	64	0%	49	14.3%	9	55.5%	possibly_damaging(0.862)	deleterious(0.01)	deleterious(0.739)	NULL
XPO6	23214	genome.wustl.edu	37	16	28145176	28145176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015171.2	-1	provisional	p.A508T	0.997	103	0%	37	27%	35	28.5%	benign(0)	tolerated(0.71)	neutral(0.002)	superfamily_ARM repeat
LOC100288452	100288452	genome.wustl.edu	37	16	28502919	28502919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343461.1	+1	model	p.S6Y	0.001	66	0%	44	20.5%	1	100%	-	-	-	NULL
IL27	246778	genome.wustl.edu	37	16	28511053	28511053	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145659.3	-1	reviewed	p.A217	0.703	61	0%	36	30.6%	1	0%	-	-	-	NULL
SULT1A1	6817	genome.wustl.edu	37	16	28619842	28619842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001055.2	-1	reviewed	p.M77I	0.007	600	0%	624	15.2%	102	49%	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
SULT1A1	6817	genome.wustl.edu	37	16	28620135	28620135	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001055.2	-1	reviewed	p.Y14	0.008	311	0%	398	10.8%	55	43.6%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATXN2L	11273	genome.wustl.edu	37	16	28845717	28845717	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_148414.1	+1	reviewed	p.G742	1.000	155	0%	121	14%	65	0%	-	-	-	NULL
ATXN2L	11273	genome.wustl.edu	37	16	28846968	28846968	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_148414.1	+1	reviewed	p.P928	1.000	43	0%	71	29.6%	130	23.8%	-	-	-	NULL
ATXN2L	11273	genome.wustl.edu	37	16	28847783	28847783	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_148414.1	+1	reviewed	p.P1092	1.000	101	0%	120	20.8%	71	35.2%	-	-	-	NULL
TUFM	7284	genome.wustl.edu	37	16	28855752	28855752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003321.4	-1	reviewed	p.Y269H	1.000	104	0%	89	27%	422	39.3%	benign(0.003)	tolerated(0.06)	neutral(0.323)	superfamily_Translation proteins,superfamily_P-loop containing nucleoside triphosphate hydrolases
SH2B1	25970	genome.wustl.edu	37	16	28880341	28880341	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015503.2	+1	reviewed	p.S352	0.000	212	0%	215	21.9%	25	28%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ATP2A1	487	genome.wustl.edu	37	16	28890058	28890058	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173201.2	+1	reviewed	p.T22	0.344	116	0%	176	30.1%	2	100%	-	-	-	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M
ATP2A1	487	genome.wustl.edu	37	16	28898770	28898770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173201.2	+1	reviewed	p.A219T	1.000	132	0%	100	28%	1	100%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
RABEP2	79874	genome.wustl.edu	37	16	28925818	28925818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024816.2	-1	validated	p.E211D	0.985	34	0%	32	25%	23	13%	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
CD19	930	genome.wustl.edu	37	16	28944245	28944245	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001770.5	+1	reviewed	p.R123	1.000	152	0%	136	20.6%	6	0%	-	-	-	NULL
CD19	930	genome.wustl.edu	37	16	28948662	28948662	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001770.5	+1	reviewed	p.N423	0.247	177	0%	146	30.1%	7	0%	-	-	-	NULL
SPNS1	83985	genome.wustl.edu	37	16	28993754	28993754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142448.1	+1	validated	p.R348H	0.999	168	0%	142	31%	152	36.1%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_MFS general substrate transporter
SPNS1	83985	genome.wustl.edu	37	16	28994535	28994535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142448.1	+1	validated	p.R415H	0.998	102	0%	97	25.8%	183	42.6%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_MFS general substrate transporter
SPNS1	83985	genome.wustl.edu	37	16	28994592	28994592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142448.1	+1	validated	p.S434N	1.000	146	0%	160	21.2%	124	53.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MFS general substrate transporter
ZG16	653808	genome.wustl.edu	37	16	29791686	29791686	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152338.2	+1	validated	p.I150	0.000	220	0%	123	21.1%	0	-	-	-	-	HMMPfam_Jacalin,superfamily_Mannose-bd_lectin
KIF22	3835	genome.wustl.edu	37	16	29809965	29809965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007317.1	+1	reviewed	p.R149Q	1.000	112	0%	134	32.1%	73	42.4%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
KIF22	3835	genome.wustl.edu	37	16	29810768	29810768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007317.1	+1	reviewed	p.L315I	0.999	88	0%	84	25%	143	40.5%	probably_damaging(0.965)	tolerated(0.21)	neutral(0.451)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
KIF22	3835	genome.wustl.edu	37	16	29816207	29816207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007317.1	+1	reviewed	p.L584I	0.253	82	0%	83	30.1%	263	42.9%	possibly_damaging(0.535)	tolerated(0.17)	neutral(0.240)	NULL
MAZ	4150	genome.wustl.edu	37	16	29821422	29821422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002383.2	+1	validated	p.A435V	1.000	23	0%	24	33.3%	126	46.8%	possibly_damaging(0.93)	tolerated(0.06)	deleterious(0.699)	NULL
C16orf53	79447	genome.wustl.edu	37	16	29828323	29828323	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024516.3	+1	validated	p.E159	1.000	120	0%	68	22.1%	84	39.2%	-	-	-	NULL
MVP	9961	genome.wustl.edu	37	16	29845090	29845090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005115.3	+1	reviewed	p.A120T	1.000	738	0%	361	23.5%	151	47.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Vault
MVP	9961	genome.wustl.edu	37	16	29853109	29853109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005115.3	+1	reviewed	p.V462M	0.894	56	0%	38	28.9%	322	39.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MVP	9961	genome.wustl.edu	37	16	29853333	29853333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005115.3	+1	reviewed	p.R512C	1.000	66	0%	43	14%	364	35.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MVP	9961	genome.wustl.edu	37	16	29857200	29857200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005115.3	+1	reviewed	p.L680M	1.000	51	0%	41	17.1%	375	37.6%	probably_damaging(0.982)	tolerated(0.11)	deleterious(0.698)	NULL
SEZ6L2	26470	genome.wustl.edu	37	16	29889708	29889708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201575.2	-1	validated	p.V538I	1.000	117	0%	108	28.7%	122	53.2%	benign(0.253)	tolerated(0.63)	neutral(0.029)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
KCTD13	253980	genome.wustl.edu	37	16	29918369	29918369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178863.2	-1	provisional	p.P272S	1.000	62	0%	58	19%	11	9%	benign(0.001)	tolerated(0.75)	neutral(0.002)	NULL
INO80E	283899	genome.wustl.edu	37	16	30012331	30012331	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173618.1	+1	provisional	p.A122	0.998	61	0%	88	26.1%	142	42.2%	-	-	-	NULL
DOC2A	8448	genome.wustl.edu	37	16	30020570	30020570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003586.2	-1	reviewed	p.L124I	1.000	167	0%	138	27.5%	1	0%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
C16orf92	146378	genome.wustl.edu	37	16	30035069	30035069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001109660.1	+1	predicted	p.T51M	0.000	120	0%	143	23.1%	0	-	benign(0.007)	tolerated(0.09)	neutral(0.296)	NULL
CORO1A	11151	genome.wustl.edu	37	16	30199763	30199763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007074.2	+1	validated	p.R383W	0.978	30	0%	38	26.3%	374	0%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_DUF1900
MYLPF	29895	genome.wustl.edu	37	16	30387978	30387978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013292.3	+1	provisional	p.K105N	1.000	176	0%	190	20.5%	0	-	probably_damaging(0.988)	tolerated(0.13)	deleterious(0.690)	HMMSmart_SM00054,superfamily_EF-hand
SEPT1	1731	genome.wustl.edu	37	16	30389962	30389962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052838.2	-1	reviewed	p.T329I	0.999	53	0%	74	10.8%	73	5.4%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
SEPHS2	22928	genome.wustl.edu	37	16	30455847	30455847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000418751	-1	known	p.A283V	1.000	193	0%	234	15.8%	149	22.1%	possibly_damaging(0.943)	tolerated(0.06)	deleterious(0.710)	HMMPfam_AIRS_C,superfamily_AIR_synth_C
SEPHS2	22928	genome.wustl.edu	37	16	30456144	30456144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000418751	-1	known	p.A184D	1.000	165	0%	140	15.7%	135	28.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AIRS_C,superfamily_AIR_synth_C
ITGAL	3683	genome.wustl.edu	37	16	30510504	30510504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002209.2	+1	reviewed	p.V648I	0.089	265	0%	173	24.9%	20	0%	benign(0.01)	tolerated(0.36)	neutral(0.021)	HMMSmart_SM00191,HMMPfam_Integrin_alpha2,superfamily_Integrin domains
ZNF764	92595	genome.wustl.edu	37	16	30566572	30566572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033410.3	-1	validated	p.D390E	0.178	36	0%	39	28.2%	5	0%	probably_damaging(0.998)	tolerated(0.2)	deleterious(0.523)	NULL
ZNF785	146540	genome.wustl.edu	37	16	30594427	30594427	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152458.5	-1	provisional	p.G224	0.721	81	0%	93	15.1%	2	100%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
PRR14	78994	genome.wustl.edu	37	16	30664068	30664068	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024031.2	+1	provisional	p.T73	0.000	205	0%	189	21.2%	29	37.9%	-	-	-	NULL
SRCAP	10847	genome.wustl.edu	37	16	30718971	30718971	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006662.2	+1	validated	p.L191	0.991	225	0%	186	24.7%	8	12.5%	-	-	-	HMMPfam_HSA,HMMSmart_SM00573
SRCAP	10847	genome.wustl.edu	37	16	30723062	30723062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006662.2	+1	validated	p.S497P	0.999	153	0%	137	24.8%	5	60%	unknown(0)	-	-	NULL
SRCAP	10847	genome.wustl.edu	37	16	30735507	30735507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006662.2	+1	validated	p.A1588T	0.988	247	0%	240	10.4%	10	30%	unknown(0)	-	-	NULL
SRCAP	10847	genome.wustl.edu	37	16	30748629	30748629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006662.2	+1	validated	p.T2423I	0.460	214	0%	156	21.2%	45	31.1%	unknown(0)	-	-	NULL
C16orf93	90835	genome.wustl.edu	37	16	30768961	30768961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001014979.1	-1	predicted	p.L241I	0.997	123	0%	152	27%	10	50%	probably_damaging(0.988)	tolerated(0.82)	neutral(0.438)	NULL
RNF40	9810	genome.wustl.edu	37	16	30780031	30780031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014771.2	+1	reviewed	p.A691T	1.000	139	0%	114	23.7%	39	43.5%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
ZNF629	23361	genome.wustl.edu	37	16	30793718	30793718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080417.1	-1	provisional	p.P644L	0.011	134	0%	130	30.8%	7	42.8%	benign(0.001)	tolerated(0.14)	neutral(0.249)	superfamily_SSF57667
SETD1A	9739	genome.wustl.edu	37	16	30977194	30977194	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014712.1	+1	provisional	p.E664	1.000	84	0%	96	15.6%	5	40%	-	-	-	NULL
STX4	6810	genome.wustl.edu	37	16	31045127	31045127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004604.3	+1	provisional	p.M1V	1.000	67	0%	57	15.8%	35	8.5%	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	NULL
ZNF646	9726	genome.wustl.edu	37	16	31089640	31089640	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014699.3	+1	validated	p.R665	0.988	98	0%	84	34.5%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF646	9726	genome.wustl.edu	37	16	31092029	31092029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014699.3	+1	validated	p.A1462T	0.005	425	0%	359	12.5%	6	16.6%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
PRSS53	339105	genome.wustl.edu	37	16	31097716	31097716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039503.2	-1	validated	p.P202L	0.992	145	0%	119	20.2%	0	-	probably_damaging(0.999)	tolerated(0.56)	deleterious(0.497)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
KAT8	84148	genome.wustl.edu	37	16	31141590	31141590	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182958.2	+1	validated	p.E305	1.000	72	1.4%	101	18.8%	75	37.3%	-	-	-	HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat)
PRSS36	146547	genome.wustl.edu	37	16	31155046	31155046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173502.3	-1	validated	p.A278D	0.135	93	0%	136	12.5%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
PYCARD	29108	genome.wustl.edu	37	16	31213056	31213056	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013258.3	-1	reviewed	p.Y146	0.995	127	0%	155	15.5%	435	25.7%	-	-	-	HMMPfam_CARD,superfamily_DEATH domain
TRIM72	493829	genome.wustl.edu	37	16	31230831	31230831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008274.3	+1	validated	p.E236D	1.000	55	0%	71	18.3%	1	0%	possibly_damaging(0.942)	tolerated(0.14)	deleterious(0.637)	NULL
ITGAD	3681	genome.wustl.edu	37	16	31405558	31405558	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005353.2	+1	validated	p.V11	0.605	189	0%	170	24.1%	0	-	-	-	-	NULL
ZNF843	283933	genome.wustl.edu	37	16	31447727	31447727	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136509.1	-1	provisional	p.C148	0.001	54	0%	46	21.7%	0	-	-	-	-	NULL
ARMC5	79798	genome.wustl.edu	37	16	31476401	31476401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024742.2	+1	validated	p.A686D	0.000	58	0%	110	21.8%	0	-	unknown(0)	-	-	NULL
C16orf58	64755	genome.wustl.edu	37	16	31504479	31504479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000436843	-1	known	p.L41M	0.000	54	0%	70	20%	5	80%	-	-	-	NULL
C16orf58	64755	genome.wustl.edu	37	16	31505066	31505066	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022744.2	-1	validated	p.I272	1.000	402	0.2%	317	24%	94	39.3%	-	-	-	HMMPfam_DUF647
ENSG00000214627	0	genome.wustl.edu	37	16	31997671	31997671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000398685	+1	known	p.A259D	0.261	126	0%	179	16.2%	0	-	-	-	-	NULL
ENSG00000198229	0	genome.wustl.edu	37	16	32077639	32077639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000354689	+1	known	p.S85N	1.000	335	0%	232	15.1%	16	0%	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV2OR16-5	100129631	genome.wustl.edu	37	16	32859336	32859336	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000398679	+1	known	p.F73I	0.001	192	0%	232	12.5%	0	-	benign(0.001)	tolerated(0.39)	neutral(0.016)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
ENSG00000226511	0	genome.wustl.edu	37	16	33740826	33740826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000450856	-1	known	p.A115T	1.000	380	0.5%	287	15.7%	2	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
ENSG00000226511	0	genome.wustl.edu	37	16	33740968	33740968	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000450856	-1	known	p.E67	1.000	425	0.2%	421	15.2%	2	0%	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
SHCBP1	79801	genome.wustl.edu	37	16	46617520	46617520	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024745.4	-1	validated	p.N534I	1.000	278	0%	106	26.4%	13	38.4%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00710,superfamily_Pectin lyase-like
MYLK3	91807	genome.wustl.edu	37	16	46771747	46771747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182493.2	-1	validated	p.P293T	0.004	52	0%	41	17.1%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
GPT2	84706	genome.wustl.edu	37	16	46956214	46956214	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133443.2	+1	validated	p.Q366	1.000	88	0%	55	23.6%	52	46.1%	-	-	-	superfamily_PLP-dependent transferases
DNAJA2	10294	genome.wustl.edu	37	16	47001554	47001554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005880.3	-1	reviewed	p.G150C	1.000	293	0%	274	10.6%	63	12.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DnaJ_CXXCXGXG,superfamily_DnaJ/Hsp40 cysteine-rich domain,superfamily_HSP40/DnaJ peptide-binding domain
NETO2	81831	genome.wustl.edu	37	16	47117172	47117172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018092.3	-1	reviewed	p.R513Q	1.000	244	0%	158	24.1%	8	25%	probably_damaging(0.968)	deleterious(0.02)	deleterious(0.793)	NULL
NETO2	81831	genome.wustl.edu	37	16	47156682	47156682	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018092.3	-1	reviewed	p.E180	1.000	322	0%	126	24.6%	3	0%	-	-	-	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ITFG1	81533	genome.wustl.edu	37	16	47252812	47252812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030790.3	-1	provisional	p.V474I	1.000	400	0%	368	25.5%	70	38.5%	benign(0.047)	tolerated(0.63)	neutral(0.007)	NULL
PHKB	5257	genome.wustl.edu	37	16	47614214	47614214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000293.2	+1	reviewed	p.G240D	1.000	421	0%	346	20.8%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
PHKB	5257	genome.wustl.edu	37	16	47621611	47621611	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000293.2	+1	reviewed	p.L269	0.949	466	0%	305	17%	10	60%	-	-	-	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
ABCC12	94160	genome.wustl.edu	37	16	48180243	48180243	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033226.2	-1	reviewed	p.T31	1.000	268	0%	161	23.6%	0	-	-	-	-	NULL
ABCC11	85320	genome.wustl.edu	37	16	48242364	48242364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032583.3	-1	reviewed	p.S551I	0.999	128	0%	73	13.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC11	85320	genome.wustl.edu	37	16	48247414	48247414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032583.3	-1	reviewed	p.F432L	0.124	245	0%	84	16.7%	0	-	possibly_damaging(0.556)	tolerated(0.39)	neutral(0.206)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC11	85320	genome.wustl.edu	37	16	48250120	48250120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032583.3	-1	reviewed	p.A286T	0.000	248	0%	94	25.5%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC11	85320	genome.wustl.edu	37	16	48258199	48258199	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032583.3	-1	reviewed	p.L179	0.021	162	0%	80	36.2%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC11	85320	genome.wustl.edu	37	16	48265769	48265769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032583.3	-1	reviewed	p.D22N	0.445	341	0.3%	234	25.6%	0	-	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
N4BP1	9683	genome.wustl.edu	37	16	48580066	48580066	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153029.3	-1	validated	p.V775	0.641	166	0%	95	10.5%	30	3.3%	-	-	-	NULL
N4BP1	9683	genome.wustl.edu	37	16	48594770	48594770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153029.3	-1	validated	p.R595M	0.983	309	0%	110	22.7%	14	57.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ZNF423	23090	genome.wustl.edu	37	16	49669608	49669608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015069.2	-1	reviewed	p.G1152V	1.000	56	0%	55	14.5%	6	50%	benign(0.041)	deleterious(0.02)	neutral(0.386)	NULL
ZNF423	23090	genome.wustl.edu	37	16	49671830	49671830	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015069.2	-1	reviewed	p.C411*	1.000	115	0%	107	27.1%	1	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2
ZNF423	23090	genome.wustl.edu	37	16	49672157	49672157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015069.2	-1	reviewed	p.E302D	1.000	116	0%	141	27%	2	50%	benign(0.006)	tolerated(0.11)	neutral(0.272)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
ZNF423	23090	genome.wustl.edu	37	16	49672654	49672654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015069.2	-1	reviewed	p.P137S	1.000	92	0%	106	24.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
HEATR3	55027	genome.wustl.edu	37	16	50118044	50118044	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182922.2	+1	provisional	e9-1	1.000	438	0.5%	210	20%	2	50%	-	-	-	-
PAPD5	64282	genome.wustl.edu	37	16	50258894	50258894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040284.2	+1	validated	p.P310H	1.000	513	0%	245	19.6%	5	40%	possibly_damaging(0.86)	deleterious(0)	deleterious(0.777)	NULL
ADCY7	113	genome.wustl.edu	37	16	50347925	50347925	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114.3	+1	reviewed	p.T936	0.203	161	0%	108	18.5%	14	28.5%	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
NKD1	85407	genome.wustl.edu	37	16	50667400	50667400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033119.3	+1	provisional	p.A374V	0.009	19	0%	17	41.2%	1	0%	benign(0.074)	tolerated(0.05)	neutral(0.350)	NULL
NOD2	64127	genome.wustl.edu	37	16	50745693	50745693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022162.1	+1	reviewed	p.A624V	0.035	84	0%	108	25%	2	0%	benign(0.313)	tolerated(0.06)	neutral(0.420)	NULL
CYLD	1540	genome.wustl.edu	37	16	50783886	50783886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015247.2	+1	reviewed	p.N93D	1.000	161	0%	165	23.6%	7	0%	benign(0.001)	tolerated(0.35)	neutral(0.021)	NULL
CYLD	1540	genome.wustl.edu	37	16	50827515	50827515	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015247.2	+1	reviewed	p.Y803	0.747	420	0%	102	11.8%	31	9.6%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
SALL1	6299	genome.wustl.edu	37	16	51172959	51172959	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002968.2	-1	reviewed	p.S1058	0.970	241	0%	316	21.2%	20	80%	-	-	-	NULL
SALL1	6299	genome.wustl.edu	37	16	51172984	51172984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002968.2	-1	reviewed	p.T1050I	1.000	246	0%	321	25.5%	12	8.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SALL1	6299	genome.wustl.edu	37	16	51173912	51173912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002968.2	-1	reviewed	p.R741W	1.000	134	0%	178	24.2%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SALL1	6299	genome.wustl.edu	37	16	51174552	51174552	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002968.2	-1	reviewed	p.P527	0.019	131	0%	164	22.6%	11	81.8%	-	-	-	NULL
SALL1	6299	genome.wustl.edu	37	16	51175169	51175169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002968.2	-1	reviewed	p.P322S	1.000	224	0%	233	24%	5	80%	probably_damaging(0.954)	tolerated(0.16)	neutral(0.457)	NULL
TOX3	27324	genome.wustl.edu	37	16	52478220	52478220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080430.2	-1	reviewed	p.L319M	1.000	261	0%	155	21.9%	3	66.6%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
CHD9	80205	genome.wustl.edu	37	16	53272458	53272458	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025134.4	+1	validated	p.Q946P	1.000	478	0%	203	22.7%	1	100%	benign(0.002)	tolerated(0.11)	neutral(0.272)	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
CHD9	80205	genome.wustl.edu	37	16	53301326	53301326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025134.4	+1	validated	p.R1481W	1.000	358	0.3%	100	19%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
CHD9	80205	genome.wustl.edu	37	16	53307609	53307609	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025134.4	+1	validated	p.Q1597*	1.000	174	0%	46	26.1%	2	0%	-	-	-	superfamily_SSF52540
AKTIP	64400	genome.wustl.edu	37	16	53526358	53526358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012398.1	-1	reviewed	p.P282H	1.000	207	0%	168	16.7%	29	37.9%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
RPGRIP1L	23322	genome.wustl.edu	37	16	53674972	53674972	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015272.2	-1	reviewed	p.F977	1.000	329	0.3%	362	21.5%	9	44.4%	-	-	-	NULL
RPGRIP1L	23322	genome.wustl.edu	37	16	53679816	53679816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015272.2	-1	reviewed	p.L802M	1.000	234	0%	268	25%	4	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
IRX5	10265	genome.wustl.edu	37	16	54967587	54967587	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005853.5	+1	validated	p.F418	1.000	11	0%	15	26.7%	0	-	-	-	-	NULL
MMP2	4313	genome.wustl.edu	37	16	55516866	55516866	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004530.4	+1	reviewed	p.L67	1.000	135	0%	126	23%	34	0%	-	-	-	superfamily_PGBD_like
MMP2	4313	genome.wustl.edu	37	16	55525797	55525797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004530.4	+1	reviewed	p.A422E	0.999	111	0%	76	22.4%	80	1.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Peptidase_M10,HMMSmart_ZnMc,superfamily_SSF55486
SLC6A2	6530	genome.wustl.edu	37	16	55705903	55705903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001043.3	+1	reviewed	p.V154I	1.000	282	0%	139	25.9%	0	-	possibly_damaging(0.842)	tolerated(0.14)	deleterious(0.572)	HMMPfam_SNF
CES1	1066	genome.wustl.edu	37	16	55844473	55844473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001025195.1	-1	reviewed	p.V425A	0.000	467	0%	171	14.6%	4	0%	benign(0.019)	tolerated(0.38)	neutral(0.019)	HMMPfam_COesterase,superfamily_SSF53474
OGFOD1	55239	genome.wustl.edu	37	16	56504480	56504480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018233.3	+1	validated	p.F354L	0.998	366	0%	106	24.5%	37	35.1%	possibly_damaging(0.773)	tolerated(0.16)	neutral(0.347)	HMMPfam_Ofd1_CTDD
BBS2	583	genome.wustl.edu	37	16	56535282	56535282	+	Missense_Mutation	SNP	C	C	T	rs192007013	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031885.3	-1	reviewed	p.R403H	0.995	309	0%	149	20.1%	21	33.3%	benign(0.001)	tolerated(0.54)	neutral(0.007)	NULL
BBS2	583	genome.wustl.edu	37	16	56543929	56543929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031885.3	-1	reviewed	p.E184D	1.000	543	0%	309	19.7%	16	37.5%	possibly_damaging(0.571)	tolerated(1)	neutral(0.196)	superfamily_WD40 repeat-like,HMMPfam_FG-GAP
SLC12A3	6559	genome.wustl.edu	37	16	56903726	56903726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000339.2	+1	reviewed	p.K197N	1.000	294	0%	258	21.7%	0	-	benign(0.116)	tolerated(0.35)	neutral(0.029)	HMMPfam_AA_permease
HERPUD1	9709	genome.wustl.edu	37	16	56976050	56976050	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014685.2	+1	reviewed	p.H304	0.986	382	0%	193	15%	169	13.6%	-	-	-	NULL
NLRC5	84166	genome.wustl.edu	37	16	57059703	57059703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032206.3	+1	validated	p.S283I	0.005	123	0%	117	17.9%	10	30%	possibly_damaging(0.856)	tolerated(0.19)	neutral(0.380)	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
NLRC5	84166	genome.wustl.edu	37	16	57068113	57068113	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032206.3	+1	validated	p.A859	0.000	68	0%	48	22.9%	29	44.8%	-	-	-	superfamily_RNI-like
NLRC5	84166	genome.wustl.edu	37	16	57111706	57111706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032206.3	+1	validated	p.E1665D	0.998	224	0%	173	24.9%	29	20.6%	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	HMMSmart_SM00368,superfamily_RNI-like
RSPRY1	89970	genome.wustl.edu	37	16	57238576	57238576	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133368.1	+1	provisional	p.I2	1.000	219	0%	270	24.4%	11	72.7%	-	-	-	NULL
RSPRY1	89970	genome.wustl.edu	37	16	57261310	57261310	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133368.1	+1	provisional	p.Q406	1.000	279	0%	170	24.1%	17	52.9%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
CCL22	6367	genome.wustl.edu	37	16	57394395	57394395	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002990.3	+1	reviewed	p.Y40	0.001	73	0%	38	26.3%	1	0%	-	-	-	PatternScan_SMALL_CYTOKINES_CC,HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines
CX3CL1	6376	genome.wustl.edu	37	16	57416023	57416023	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002996.3	+1	provisional	p.R91	0.000	40	0%	24	20.8%	99	40.4%	-	-	-	superfamily_Interleukin 8-like chemokines
POLR2C	5432	genome.wustl.edu	37	16	57503667	57503667	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032940.2	+1	reviewed	p.Q145*	1.000	119	0%	103	23.3%	54	1.8%	-	-	-	superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMPfam_RNA_pol_A_bac,superfamily_Insert subdomain of RNA polymerase alpha subunit,HMMSmart_SM00662,PatternScan_EF_HAND_1
GPR114	221188	genome.wustl.edu	37	16	57597137	57597137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153837.1	+1	provisional	p.A92V	0.000	84	0%	78	11.5%	4	0%	benign(0.071)	tolerated(0.2)	neutral(0.054)	NULL
GPR114	221188	genome.wustl.edu	37	16	57601927	57601927	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153837.1	+1	provisional	p.S327	1.000	90	0%	91	12.1%	5	20%	-	-	-	HMMPfam_7tm_2
GPR56	9289	genome.wustl.edu	37	16	57695769	57695769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145771.1	+1	reviewed	p.L615I	1.000	252	0%	218	25.2%	104	34.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_2
CCDC135	84229	genome.wustl.edu	37	16	57756973	57756973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032269.5	+1	validated	p.K490E	0.990	128	0%	68	25%	9	66.6%	benign(0.202)	deleterious(0.05)	neutral(0.365)	NULL
KATNB1	10300	genome.wustl.edu	37	16	57785560	57785560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005886.2	+1	reviewed	p.S147N	1.000	26	0%	38	42.1%	30	33.3%	benign(0.167)	tolerated(0.11)	neutral(0.287)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
KIFC3	3801	genome.wustl.edu	37	16	57793712	57793712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005550.3	-1	validated	p.R802W	0.256	20	0%	34	20.6%	18	11.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CNGB1	1258	genome.wustl.edu	37	16	57921977	57921977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001297.4	-1	reviewed	p.R1082C	0.996	70	0%	101	27.7%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_cAMP-binding domain-like
CNGB1	1258	genome.wustl.edu	37	16	57974189	57974189	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001297.4	-1	reviewed	p.G386	0.000	149	0%	115	19.1%	0	-	-	-	-	NULL
ZNF319	57567	genome.wustl.edu	37	16	58031051	58031051	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020807.1	-1	provisional	p.C373	0.998	130	0%	139	22.3%	7	28.5%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF319	57567	genome.wustl.edu	37	16	58031230	58031230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020807.1	-1	provisional	p.P314S	1.000	26	0%	22	45.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
C16orf57	79650	genome.wustl.edu	37	16	58048194	58048194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024598.2	+1	validated	p.N156S	0.994	260	0%	226	12.8%	42	19%	benign(0.002)	tolerated(0.32)	neutral(0.024)	HMMPfam_HVSL
MMP15	4324	genome.wustl.edu	37	16	58074072	58074072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002428.2	+1	reviewed	p.S245I	1.000	37	0%	41	29.3%	81	40.7%	possibly_damaging(0.684)	deleterious(0)	deleterious(0.689)	HMMPfam_Peptidase_M10,HMMSmart_ZnMc,superfamily_SSF55486
MMP15	4324	genome.wustl.edu	37	16	58075753	58075753	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002428.2	+1	reviewed	p.R381	0.007	79	0%	70	20%	51	43.1%	-	-	-	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
CCDC113	29070	genome.wustl.edu	37	16	58312454	58312454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014157.3	+1	validated	p.Q320H	0.002	140	0%	75	29.3%	10	70%	benign(0.002)	tolerated(0.16)	neutral(0.059)	NULL
NDRG4	65009	genome.wustl.edu	37	16	58538089	58538089	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130487.1	+1	reviewed	p.F105	0.150	165	0%	153	22.9%	1	0%	-	-	-	HMMPfam_Ndr,superfamily_SSF53474
NDRG4	65009	genome.wustl.edu	37	16	58540916	58540916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130487.1	+1	reviewed	p.N258S	1.000	133	0%	122	16.4%	0	-	probably_damaging(0.993)	tolerated(0.6)	neutral(0.455)	HMMPfam_Ndr,superfamily_SSF53474
SETD6	79918	genome.wustl.edu	37	16	58550478	58550478	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024860.2	+1	validated	p.I167	0.659	195	0%	264	23.1%	7	42.8%	-	-	-	HMMPfam_SET,superfamily_SET domain
SETD6	79918	genome.wustl.edu	37	16	58552390	58552390	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024860.2	+1	validated	p.A329	0.954	547	0%	561	21.4%	11	45.4%	-	-	-	superfamily_RuBisCo LSMT C-terminal substrate-binding domain
SETD6	79918	genome.wustl.edu	37	16	58552789	58552789	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024860.2	+1	validated	p.T402	0.869	322	0%	310	25.5%	23	47.8%	-	-	-	superfamily_RuBisCo LSMT C-terminal substrate-binding domain
SLC38A7	55238	genome.wustl.edu	37	16	58706108	58706108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018231.1	-1	provisional	p.P308H	0.996	80	0%	57	17.5%	21	33.3%	possibly_damaging(0.476)	deleterious(0.01)	deleterious(0.562)	HMMPfam_Aa_trans
SLC38A7	55238	genome.wustl.edu	37	16	58713967	58713967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018231.1	-1	provisional	p.R22W	1.000	46	0%	40	30%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDH8	1006	genome.wustl.edu	37	16	61689529	61689529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001796.2	-1	reviewed	p.P584H	0.998	394	0%	223	15.2%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH8	1006	genome.wustl.edu	37	16	61689626	61689626	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001796.2	-1	reviewed	e10-1	1.000	265	0%	156	25.6%	0	-	-	-	-	-
CDH8	1006	genome.wustl.edu	37	16	61854840	61854840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001796.2	-1	reviewed	p.R338M	1.000	337	0%	74	24.3%	0	-	benign(0.337)	tolerated(0.1)	neutral(0.392)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH8	1006	genome.wustl.edu	37	16	61858915	61858915	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001796.2	-1	reviewed	e4+1	1.000	265	0%	73	20.5%	0	-	-	-	-	-
CDH8	1006	genome.wustl.edu	37	16	61935363	61935363	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001796.2	-1	reviewed	p.L89	1.000	233	0%	271	20.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH8	1006	genome.wustl.edu	37	16	62055135	62055135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001796.2	-1	reviewed	p.R58H	1.000	250	0.4%	229	21.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CDH11	1009	genome.wustl.edu	37	16	65025717	65025717	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001797.2	-1	reviewed	p.T255	0.993	515	0%	168	24.4%	7	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH11	1009	genome.wustl.edu	37	16	65032578	65032578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001797.2	-1	reviewed	p.R137Q	1.000	248	0%	111	18.9%	4	0%	probably_damaging(0.958)	tolerated(0.11)	deleterious(0.673)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ENSG00000250685	0	genome.wustl.edu	37	16	65319313	65319313	+	RNA	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000505989	-1	known	NULL	0.011	336	0%	170	21.2%	0	-	-	-	-	-
CDH5	1003	genome.wustl.edu	37	16	66423306	66423306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001795.3	+1	reviewed	p.A221D	0.000	193	0%	82	25.6%	1	0%	benign(0.003)	tolerated(0.41)	neutral(0.015)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CKLF	51192	genome.wustl.edu	37	16	66597060	66597060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016951.2	+1	reviewed	p.M91I	0.858	607	0%	531	21.7%	126	23.8%	benign(0.007)	tolerated(0.37)	neutral(0.019)	HMMPfam_MARVEL
CMTM3	123920	genome.wustl.edu	37	16	66642238	66642238	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001048251.1	+1	reviewed	p.C58*	1.000	331	0%	392	23.5%	19	15.7%	-	-	-	HMMPfam_MARVEL
CMTM4	146223	genome.wustl.edu	37	16	66651228	66651228	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178818.2	-1	reviewed	p.K219N	0.000	393	0%	505	21.6%	7	42.8%	possibly_damaging(0.901)	-	-	NULL
DYNC1LI2	1783	genome.wustl.edu	37	16	66783110	66783110	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006141.2	-1	validated	p.E96	1.000	689	0%	726	21.6%	26	42.3%	-	-	-	HMMPfam_DLIC,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC79	283847	genome.wustl.edu	37	16	66801332	66801332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136505.1	-1	provisional	p.T589M	0.748	274	0%	340	22.9%	0	-	possibly_damaging(0.891)	tolerated(0.05)	deleterious(0.696)	NULL
CCDC79	283847	genome.wustl.edu	37	16	66824822	66824822	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136505.1	-1	provisional	p.C44	1.000	265	0%	191	19.9%	0	-	-	-	-	superfamily_ARM repeat
PDP2	57546	genome.wustl.edu	37	16	66918571	66918571	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020786.1	+1	validated	p.S128	0.993	75	0%	60	31.7%	4	50%	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
CDH16	1014	genome.wustl.edu	37	16	66946242	66946242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004062.2	-1	reviewed	p.R484H	1.000	186	0%	164	31.1%	34	70.5%	probably_damaging(0.991)	tolerated(0.09)	deleterious(0.740)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH16	1014	genome.wustl.edu	37	16	66949970	66949970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004062.2	-1	reviewed	p.P141H	0.995	76	0%	86	12.8%	15	13.3%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Cadherin,superfamily_Cadherin-like
CES3	23491	genome.wustl.edu	37	16	67005152	67005152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024922.4	+1	validated	p.Q407H	0.000	294	0%	259	16.2%	6	0%	possibly_damaging(0.66)	tolerated(0.56)	neutral(0.240)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
CES3	23491	genome.wustl.edu	37	16	67005169	67005169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024922.4	+1	validated	p.M413T	0.000	288	0%	259	24.3%	3	66.6%	benign(0.062)	deleterious(0.01)	neutral(0.410)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
C16orf70	80262	genome.wustl.edu	37	16	67159903	67159903	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025187.3	+1	provisional	p.D63	0.998	434	0%	230	23%	7	0%	-	-	-	HMMPfam_UPF0183
HSF4	3299	genome.wustl.edu	37	16	67201026	67201026	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040667.2	+1	reviewed	p.S210	0.996	252	0%	309	27.2%	15	46.6%	unknown(0)	-	-	HMMPfam_HSF_DNA-bind
HSF4	3299	genome.wustl.edu	37	16	67201674	67201674	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040667.2	+1	reviewed	p.D302	0.983	33	0%	41	14.6%	4	75%	-	-	-	NULL
HSF4	3299	genome.wustl.edu	37	16	67201787	67201787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040667.2	+1	reviewed	p.S340I	1.000	35	0%	52	21.2%	8	62.5%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
EXOC3L1	283849	genome.wustl.edu	37	16	67219315	67219315	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178516.3	-1	validated	p.L525	0.431	27	0%	40	32.5%	15	60%	-	-	-	HMMPfam_Sec6
SLC9A5	6553	genome.wustl.edu	37	16	67291337	67291337	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004594.2	+1	validated	p.H475	1.000	307	0%	239	24.3%	2	50%	-	-	-	NULL
SLC9A5	6553	genome.wustl.edu	37	16	67298345	67298345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004594.2	+1	validated	p.L645M	0.983	45	0%	41	12.2%	1	0%	benign(0.37)	tolerated(0.19)	neutral(0.167)	NULL
PLEKHG4	25894	genome.wustl.edu	37	16	67319118	67319118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001129727.1	+1	reviewed	p.R732M	0.991	40	0%	27	18.5%	1	100%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	superfamily_DBL homology domain (DH-domain)
LRRC36	55282	genome.wustl.edu	37	16	67381429	67381429	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018296.5	+1	validated	p.K141	1.000	336	0%	175	12.6%	0	-	-	-	-	superfamily_L domain-like
LRRC36	55282	genome.wustl.edu	37	16	67384179	67384179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018296.5	+1	validated	p.S188I	0.578	319	0.3%	211	23.7%	0	-	benign(0.039)	tolerated(0.08)	neutral(0.302)	NULL
LRRC36	55282	genome.wustl.edu	37	16	67401231	67401231	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018296.5	+1	validated	p.N356Y	1.000	438	0%	146	17.8%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
FAM65A	79567	genome.wustl.edu	37	16	67575951	67575951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024519.2	+1	validated	p.T421I	0.000	43	0%	45	35.6%	24	54.1%	benign(0.252)	deleterious(0.01)	neutral(0.432)	NULL
CTCF	10664	genome.wustl.edu	37	16	67654607	67654607	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006565.2	+1	reviewed	p.K365T	1.000	188	0%	95	26.3%	24	54.1%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CTCF	10664	genome.wustl.edu	37	16	67660564	67660564	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006565.2	+1	reviewed	p.S488	0.999	245	0%	135	27.4%	37	43.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RLTPR	146206	genome.wustl.edu	37	16	67681650	67681650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013838.1	+1	provisional	p.Q313H	0.665	37	0%	35	25.7%	2	50%	benign(0.001)	tolerated(0.45)	neutral(0.012)	HMMSmart_SM00368,superfamily_RNI-like
RLTPR	146206	genome.wustl.edu	37	16	67686417	67686417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013838.1	+1	provisional	p.L954I	0.000	219	0%	334	13.8%	2	0%	possibly_damaging(0.666)	tolerated(0.43)	neutral(0.249)	NULL
ACD	65057	genome.wustl.edu	37	16	67693628	67693628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001082486.1	-1	reviewed	p.V191I	0.006	31	0%	60	21.7%	38	39.4%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
RANBP10	57610	genome.wustl.edu	37	16	67765375	67765375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020850.1	-1	provisional	p.K297Q	1.000	573	0%	339	13.3%	9	22.2%	benign(0.063)	deleterious(0.02)	neutral(0.387)	HMMSmart_CTLH
TSNAXIP1	55815	genome.wustl.edu	37	16	67857536	67857536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018430.2	+1	validated	p.R78I	1.000	320	0%	269	23.8%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
TSNAXIP1	55815	genome.wustl.edu	37	16	67859635	67859635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018430.2	+1	validated	p.R240C	0.995	146	0%	136	19.9%	1	100%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
EDC4	23644	genome.wustl.edu	37	16	67911275	67911275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014329.3	+1	validated	p.V203M	1.000	244	0%	326	18.7%	28	39.2%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00320,superfamily_WD40 repeat-like
EDC4	23644	genome.wustl.edu	37	16	67914738	67914738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014329.3	+1	validated	p.Q792H	1.000	37	0%	45	20%	32	46.8%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
EDC4	23644	genome.wustl.edu	37	16	67916940	67916940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014329.3	+1	validated	p.A1237T	0.724	72	0%	94	22.3%	154	34.4%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
PSKH1	5681	genome.wustl.edu	37	16	67943213	67943213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006742.2	+1	validated	p.K187N	1.000	220	0%	108	24.1%	14	50%	possibly_damaging(0.659)	deleterious(0)	deleterious(0.677)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PSKH1	5681	genome.wustl.edu	37	16	67961376	67961376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006742.2	+1	validated	p.R369H	1.000	89	0%	68	20.6%	15	33.3%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_Kinase_like
PSMB10	5699	genome.wustl.edu	37	16	67970425	67970425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000435933	-1	known	p.A17S	0.000	67	0%	63	22.2%	2	50%	-	-	-	NULL
LCAT	3931	genome.wustl.edu	37	16	67977093	67977093	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000229.1	-1	reviewed	p.Q59	0.999	124	0%	115	20.9%	4	0%	-	-	-	superfamily_alpha/beta-Hydrolases
SLC12A4	6560	genome.wustl.edu	37	16	67984329	67984329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005072.4	-1	validated	p.V508I	1.000	109	0%	123	34.1%	18	27.7%	possibly_damaging(0.895)	tolerated(0.13)	deleterious(0.605)	HMMPfam_AA_permease
SLC12A4	6560	genome.wustl.edu	37	16	67985807	67985807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005072.4	-1	validated	p.D351N	0.694	46	0%	55	25.5%	18	27.7%	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMPfam_AA_permease
SLC12A4	6560	genome.wustl.edu	37	16	67986238	67986238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005072.4	-1	validated	p.T256S	1.000	580	0%	487	20.5%	6	33.3%	benign(0.004)	tolerated(0.14)	neutral(0.249)	HMMPfam_AA_permease
DPEP3	64180	genome.wustl.edu	37	16	68014146	68014146	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022357.3	-1	reviewed	p.L71	0.000	41	0%	30	23.3%	0	-	-	-	-	NULL
DPEP2	64174	genome.wustl.edu	37	16	68023261	68023261	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022355.2	-1	validated	p.F345	1.000	285	0%	283	20.5%	4	0%	-	-	-	HMMPfam_Peptidase_M19,superfamily_Metallo-dependent hydrolases
NFATC3	4775	genome.wustl.edu	37	16	68248260	68248260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004555.2	+1	reviewed	p.Q1045H	1.000	509	0.2%	282	21.3%	7	42.8%	benign(0.03)	deleterious(0)	neutral(0.446)	NULL
ESRP2	80004	genome.wustl.edu	37	16	68265785	68265785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024939.2	-1	validated	p.A407T	1.000	39	0%	52	28.8%	34	50%	benign(0.124)	tolerated(0.09)	neutral(0.306)	HMMSmart_RRM,superfamily_SSF54928
PLA2G15	23659	genome.wustl.edu	37	16	68289682	68289682	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012320.3	+1	reviewed	p.P172	1.000	89	0%	91	23.1%	9	44.4%	-	-	-	HMMPfam_LACT,superfamily_alpha/beta-Hydrolases
SLC7A6	9057	genome.wustl.edu	37	16	68308853	68308853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001076785.1	+1	validated	p.A75V	1.000	438	0%	539	10.2%	3	0%	possibly_damaging(0.49)	deleterious(0)	deleterious(0.608)	HMMPfam_AA_permease
SLC7A6	9057	genome.wustl.edu	37	16	68308948	68308948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001076785.1	+1	validated	p.K107E	1.000	330	0%	375	12.3%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_AA_permease
SLC7A6	9057	genome.wustl.edu	37	16	68321745	68321745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001076785.1	+1	validated	p.I207T	1.000	242	0%	163	17.8%	2	50%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_AA_permease
PRMT7	54496	genome.wustl.edu	37	16	68358604	68358604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019023.2	+1	validated	p.G51C	1.000	180	0%	124	20.2%	19	5.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PRMT7	54496	genome.wustl.edu	37	16	68380160	68380160	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019023.2	+1	validated	p.R390*	0.987	70	0%	63	28.6%	51	3.9%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SMPD3	55512	genome.wustl.edu	37	16	68405022	68405022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018667.3	-1	validated	p.A355T	1.000	67	0%	67	26.9%	0	-	probably_damaging(0.996)	tolerated(0.27)	deleterious(0.495)	NULL
ZFP90	146198	genome.wustl.edu	37	16	68596948	68596948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133458.2	+1	provisional	p.D86E	0.983	267	0.4%	74	18.9%	2	0%	benign(0.084)	tolerated(0.07)	neutral(0.325)	NULL
ZFP90	146198	genome.wustl.edu	37	16	68598277	68598277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133458.2	+1	provisional	p.E529D	0.974	206	0%	81	21%	9	55.5%	benign(0.144)	tolerated(0.08)	neutral(0.312)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HAS3	3038	genome.wustl.edu	37	16	69143815	69143815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005329.2	+1	reviewed	p.R173C	1.000	66	0%	66	24.2%	10	60%	possibly_damaging(0.836)	tolerated(0.17)	neutral(0.379)	superfamily_SSF53448
CHTF8	54921	genome.wustl.edu	37	16	69154333	69154333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039690.3	-1	reviewed	p.V121L	1.000	565	0%	465	21.9%	41	41.4%	probably_damaging(0.99)	tolerated(0.15)	deleterious(0.682)	NULL
CIRH1A	84916	genome.wustl.edu	37	16	69184572	69184572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032830.2	+1	reviewed	p.R291C	0.998	205	0%	102	13.7%	71	26.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
CIRH1A	84916	genome.wustl.edu	37	16	69199374	69199374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032830.2	+1	reviewed	p.P593L	1.000	433	0%	256	13.7%	115	28.6%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
VPS4A	27183	genome.wustl.edu	37	16	69355028	69355028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013245.2	+1	reviewed	p.S309N	1.000	95	0%	99	28.3%	107	40.1%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
COG8	84342	genome.wustl.edu	37	16	69366786	69366786	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032382.4	-1	reviewed	e4-1	1.000	133	0%	149	20.1%	2	50%	-	-	-	-
NIP7	51388	genome.wustl.edu	37	16	69374191	69374191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016101.3	+1	validated	p.R80W	1.000	225	0%	290	19.3%	43	39.5%	benign(0.002)	deleterious(0)	neutral(0.445)	superfamily_Pre-PUA domain
NFAT5	10725	genome.wustl.edu	37	16	69726137	69726137	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138713.2	+1	reviewed	p.G803	1.000	474	0%	274	21.5%	1	0%	-	-	-	NULL
NQO1	1728	genome.wustl.edu	37	16	69746985	69746985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000903.2	-1	reviewed	p.M155I	1.000	140	0%	72	20.8%	110	42.7%	benign(0.316)	tolerated(0.06)	neutral(0.421)	HMMPfam_Flavodoxin_2,superfamily_Flavoproteins
WWP2	11060	genome.wustl.edu	37	16	69963382	69963382	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007014.3	+1	reviewed	p.Y422	1.000	77	0%	59	27.1%	20	25%	-	-	-	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP
CLEC18A	348174	genome.wustl.edu	37	16	69997477	69997477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182619.2	+1	validated	p.A435V	0.999	258	0%	334	9.9%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ENSG00000226232	0	genome.wustl.edu	37	16	70020282	70020282	+	Splice_Site	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000437824	-1	known	e2+2	0.046	85	0%	53	11.3%	1	100%	-	-	-	-
PDXDC2P	283970	genome.wustl.edu	37	16	70072889	70072889	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000325845	-1	known	e5-1	1.000	137	0%	80	23.7%	0	-	-	-	-	-
PDPR	55066	genome.wustl.edu	37	16	70166201	70166201	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017990.3	+1	validated	p.F332C	1.000	403	0%	219	12.3%	3	0%	probably_damaging(0.987)	tolerated(0.1)	deleterious(0.723)	HMMPfam_DAO,superfamily_SSF51905,superfamily_SSF54373
PDPR	55066	genome.wustl.edu	37	16	70177428	70177428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017990.3	+1	validated	p.A541T	1.000	208	0%	98	16.3%	3	33.3%	probably_damaging(0.987)	tolerated(0.06)	deleterious(0.759)	HMMPfam_GCV_T,superfamily_SSF103025
PDPR	55066	genome.wustl.edu	37	16	70190651	70190651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017990.3	+1	validated	p.R837W	1.000	324	0%	198	14.1%	8	37.5%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_GCV_T_C,superfamily_SSF101790
AARS	16	genome.wustl.edu	37	16	70316688	70316688	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001605.2	-1	reviewed	e1-1	0.616	214	0%	181	28.7%	0	-	-	-	-	-
DDX19B	11269	genome.wustl.edu	37	16	70363289	70363289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007242.4	+1	reviewed	p.K234N	1.000	301	0%	174	21.8%	53	26.4%	benign(0.04)	tolerated(0.27)	neutral(0.036)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ST3GAL2	6483	genome.wustl.edu	37	16	70429027	70429027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006927.3	-1	reviewed	p.L131M	1.000	175	0.6%	84	29.8%	11	27.2%	possibly_damaging(0.922)	tolerated(0.21)	neutral(0.415)	HMMPfam_Glyco_transf_29
FUK	197258	genome.wustl.edu	37	16	70501788	70501788	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145059.2	+1	reviewed	e7-1	1.000	328	0%	291	20.3%	0	-	-	-	-	-
COG4	25839	genome.wustl.edu	37	16	70543896	70543896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015386.2	-1	validated	p.L256P	0.018	347	0%	177	13%	26	30.7%	benign(0.082)	tolerated(0.1)	neutral(0.292)	HMMPfam_COG4,HMMSmart_SM00762
COG4	25839	genome.wustl.edu	37	16	70546141	70546141	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015386.2	-1	validated	e5+1	1.000	186	0%	78	25.6%	2	100%	-	-	-	-
SF3B3	23450	genome.wustl.edu	37	16	70594435	70594435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012426.4	+1	reviewed	p.R692W	1.000	269	0%	89	33.7%	160	46.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SF3B3	23450	genome.wustl.edu	37	16	70604029	70604029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012426.4	+1	reviewed	p.L1129I	1.000	167	0%	65	16.9%	364	39.5%	possibly_damaging(0.688)	deleterious(0.01)	deleterious(0.651)	HMMPfam_CPSF_A
IL34	146433	genome.wustl.edu	37	16	70680861	70680861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152456.2	+1	validated	p.G4D	0.980	52	0%	56	26.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
VAC14	55697	genome.wustl.edu	37	16	70834740	70834740	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018052.3	-1	validated	p.L22	1.000	74	0%	152	21.1%	14	57.1%	-	-	-	superfamily_ARM-type_fold
HYDIN	54768	genome.wustl.edu	37	16	70841787	70841787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032821.2	-1	validated	p.A5020D	0.592	163	0%	121	14.9%	10	50%	benign(0.289)	deleterious(0.01)	deleterious(0.495)	NULL
HYDIN	54768	genome.wustl.edu	37	16	70913535	70913535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032821.2	-1	validated	p.F3446S	1.000	314	0%	97	17.5%	0	-	benign(0.045)	deleterious(0)	neutral(0.447)	NULL
HYDIN	54768	genome.wustl.edu	37	16	70941379	70941379	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032821.2	-1	validated	p.Q2803	1.000	418	0%	158	13.3%	0	-	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70972586	70972586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032821.2	-1	validated	p.A2308V	0.994	432	0%	316	10.4%	0	-	possibly_damaging(0.888)	deleterious(0.04)	deleterious(0.696)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HYDIN	54768	genome.wustl.edu	37	16	70998757	70998757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032821.2	-1	validated	p.L1887M	0.999	545	0.2%	135	16.3%	0	-	probably_damaging(0.962)	deleterious(0.04)	deleterious(0.754)	NULL
HYDIN	54768	genome.wustl.edu	37	16	71015408	71015408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032821.2	-1	validated	p.V1465I	0.344	634	0%	218	17%	0	-	benign(0.051)	tolerated(0.41)	neutral(0.018)	NULL
HYDIN	54768	genome.wustl.edu	37	16	71196561	71196561	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032821.2	-1	validated	p.R197*	0.998	353	0%	181	21.5%	0	-	-	-	-	superfamily_PapD-like
FTSJD1	55783	genome.wustl.edu	37	16	71319144	71319144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099642.1	-1	validated	p.A227V	0.472	273	0%	234	23.5%	10	40%	benign(0.08)	tolerated(0.28)	neutral(0.037)	HMMPfam_FtsJ,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ZNF23	7571	genome.wustl.edu	37	16	71482992	71482992	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145911.1	-1	provisional	p.D312	0.844	223	0%	186	25.8%	5	60%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF23	7571	genome.wustl.edu	37	16	71483083	71483083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145911.1	-1	provisional	p.C282Y	1.000	228	0%	203	24.1%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CHST4	10164	genome.wustl.edu	37	16	71571460	71571460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005769.2	+1	reviewed	p.V294M	0.017	119	0%	59	23.7%	4	25%	possibly_damaging(0.558)	deleterious(0.04)	deleterious(0.539)	superfamily_SSF52540
CHST4	10164	genome.wustl.edu	37	16	71571477	71571477	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005769.2	+1	reviewed	p.L299	0.998	127	0%	62	17.7%	5	60%	-	-	-	superfamily_SSF52540
MARVELD3	91862	genome.wustl.edu	37	16	71668504	71668504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052858.3	+1	validated	p.P335H	0.005	248	0%	171	26.9%	6	50%	possibly_damaging(0.92)	deleterious(0.05)	deleterious(0.716)	HMMPfam_MARVEL
PHLPP2	23035	genome.wustl.edu	37	16	71683605	71683605	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015020.2	-1	validated	p.G1054*	1.000	87	0%	45	15.6%	3	33.3%	-	-	-	NULL
PHLPP2	23035	genome.wustl.edu	37	16	71689173	71689173	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015020.2	-1	validated	p.F852C	1.000	365	0%	225	26.2%	0	-	benign(0.054)	tolerated(0.08)	neutral(0.303)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
PHLPP2	23035	genome.wustl.edu	37	16	71690487	71690487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015020.2	-1	validated	p.G793W	1.000	804	0.1%	463	22.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
PHLPP2	23035	genome.wustl.edu	37	16	71724553	71724553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015020.2	-1	validated	p.R160C	1.000	195	0%	122	16.4%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PH domain-like
AP1G1	164	genome.wustl.edu	37	16	71784210	71784210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001030007.1	-1	reviewed	p.A440V	1.000	253	0%	101	14.9%	30	43.3%	benign(0.001)	tolerated(1)	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
AP1G1	164	genome.wustl.edu	37	16	71789949	71789949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001030007.1	-1	reviewed	p.A404V	1.000	224	0%	133	30.8%	13	53.8%	benign(0.066)	tolerated(0.4)	neutral(0.021)	HMMPfam_Adaptin_N,superfamily_ARM repeat
ATXN1L	342371	genome.wustl.edu	37	16	71883970	71883970	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001137675.2	+1	validated	p.T109	0.782	239	0%	245	23.3%	4	50%	-	-	-	NULL
PKD1L3	342372	genome.wustl.edu	37	16	71984118	71984118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000335106	-1	known	p.Q1094H	0.001	485	0%	232	28.9%	0	-	-	-	-	NULL
HP	3240	genome.wustl.edu	37	16	72094425	72094425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005143.3	+1	reviewed	p.R286Q	0.975	333	0.6%	63	9.5%	6	0%	benign(0.007)	tolerated(0.4)	neutral(0.016)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
PMFBP1	83449	genome.wustl.edu	37	16	72163133	72163133	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031293.2	-1	validated	e12-1	0.833	351	0%	168	13.1%	0	-	-	-	-	-
ZFHX3	463	genome.wustl.edu	37	16	72828006	72828006	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006885.3	-1	reviewed	p.T2859P	0.979	632	0%	633	22.9%	7	57.1%	possibly_damaging(0.928)	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72829540	72829540	+	Missense_Mutation	SNP	C	C	A	rs4614733		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006885.3	-1	reviewed	p.Q2347H	1.000	136	0%	170	14.7%	2	50%	unknown(0)	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFHX3	463	genome.wustl.edu	37	16	72991359	72991359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006885.3	-1	reviewed	p.A896T	0.874	127	0.8%	149	24.2%	1	0%	unknown(0)	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72991395	72991395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006885.3	-1	reviewed	p.A884T	0.996	217	0%	233	15.5%	2	50%	unknown(0)	-	-	NULL
ENSG00000226351	0	genome.wustl.edu	37	16	73127110	73127110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000433532	+1	known	p.R52M	0.005	163	0%	83	22.9%	0	-	-	-	-	NULL
NPIPL2	440348	genome.wustl.edu	37	16	74415578	74415578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344099.1	+1	model	p.F77L	0.005	119	0%	89	16.9%	0	-	benign(0)	tolerated(1)	-	HMMPfam_NPIP
NPIPL2	440348	genome.wustl.edu	37	16	74419297	74419297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344099.1	+1	model	p.V103I	0.045	2052	0%	1050	10%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_NPIP
GLG1	2734	genome.wustl.edu	37	16	74490564	74490564	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012201.5	-1	validated	p.W1119G	1.000	375	0.5%	264	23.9%	165	35.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WDR59	79726	genome.wustl.edu	37	16	74923615	74923615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030581.3	-1	validated	p.Q727H	1.000	139	0%	48	20.8%	18	33.3%	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
WDR59	79726	genome.wustl.edu	37	16	74943481	74943481	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030581.3	-1	validated	p.A520	0.756	215	0%	95	17.9%	27	44.4%	-	-	-	NULL
WDR59	79726	genome.wustl.edu	37	16	74950046	74950046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030581.3	-1	validated	p.A360T	0.140	562	0%	216	22.2%	35	28.5%	benign(0.007)	tolerated(0.61)	neutral(0.004)	superfamily_WD40 repeat-like
ZNRF1	84937	genome.wustl.edu	37	16	75138748	75138748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032268.4	+1	reviewed	p.T196M	1.000	118	0%	108	18.5%	160	38.1%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
BCAR1	9564	genome.wustl.edu	37	16	75276618	75276618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014567.3	-1	validated	p.Y128C	1.000	411	0%	349	23.5%	27	62.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CFDP1	10428	genome.wustl.edu	37	16	75445778	75445778	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006324.2	-1	validated	p.E159*	0.996	692	0%	379	23%	53	5.6%	-	-	-	NULL
CHST6	4166	genome.wustl.edu	37	16	75512725	75512725	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021615.4	-1	reviewed	p.R334	0.805	47	0%	36	16.7%	5	60%	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
KARS	3735	genome.wustl.edu	37	16	75669863	75669863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130089.1	-1	reviewed	p.L234M	0.997	354	0%	216	19.4%	232	37%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA_anti,superfamily_Nucleic_acid_OB
CNTNAP4	85445	genome.wustl.edu	37	16	76587219	76587219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138994.3	+1	validated	p.A1088V	0.518	31	0%	20	25%	0	-	benign(0.005)	deleterious(0.03)	neutral(0.364)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
MON1B	22879	genome.wustl.edu	37	16	77227662	77227662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014940.2	+1	validated	p.A155S	0.992	102	0%	118	28%	11	36.3%	benign(0.001)	tolerated(1)	-	HMMPfam_Mon1
ADAMTS18	170692	genome.wustl.edu	37	16	77325281	77325281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199355.2	-1	reviewed	p.R1095I	1.000	296	0%	113	24.8%	0	-	probably_damaging(0.976)	tolerated(0.14)	deleterious(0.667)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
MAF	4094	genome.wustl.edu	37	16	79632690	79632690	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005360.4	-1	reviewed	p.E370	1.000	97	0%	109	29.4%	19	0%	-	-	-	NULL
CENPN	55839	genome.wustl.edu	37	16	81053857	81053857	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001100625.1	+1	validated	p.R169	0.000	162	0%	113	14.2%	38	42.1%	-	-	-	HMMPfam_CHL4
CENPN	55839	genome.wustl.edu	37	16	81060200	81060200	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001100625.1	+1	validated	p.F256Y	1.000	355	0%	324	21.9%	8	37.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CHL4
ATMIN	23300	genome.wustl.edu	37	16	81078192	81078192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015251.2	+1	validated	p.L697I	1.000	283	0%	200	19.5%	29	31%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
GCSH	2653	genome.wustl.edu	37	16	81118158	81118158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004483.4	-1	reviewed	p.L112I	1.000	146	0%	143	21.7%	36	30.5%	possibly_damaging(0.614)	tolerated(0.34)	neutral(0.236)	HMMPfam_GCV_H,PatternScan_LIPOYL,superfamily_Single hybrid motif
PKD1L2	114780	genome.wustl.edu	37	16	81185468	81185468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052892.3	-1	reviewed	p.Y1486C	1.000	174	0%	109	21.1%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
PKD1L2	114780	genome.wustl.edu	37	16	81187676	81187676	+	Silent	SNP	C	C	T	rs148002235	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052892.3	-1	reviewed	p.P1432	0.551	334	0%	157	24.2%	1	0%	-	-	-	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
PKD1L2	114780	genome.wustl.edu	37	16	81190550	81190550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052892.3	-1	reviewed	p.V1347I	1.000	114	0%	83	22.9%	1	0%	probably_damaging(0.979)	tolerated(0.12)	deleterious(0.682)	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81190619	81190619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052892.3	-1	reviewed	p.V1324M	1.000	109	0%	64	14.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00303
PKD1L2	114780	genome.wustl.edu	37	16	81213366	81213366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001076780.1	-1	reviewed	p.R715I	0.078	162	0%	102	15.7%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81222486	81222486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001076780.1	-1	reviewed	p.G597R	1.000	183	0.5%	140	27.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81232529	81232529	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001076780.1	-1	reviewed	p.I427	0.086	579	0%	253	20.9%	0	-	-	-	-	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81249972	81249972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001076780.1	-1	reviewed	p.S114I	0.998	71	0%	38	18.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
PKD1L2	114780	genome.wustl.edu	37	16	81253868	81253868	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001076780.1	-1	reviewed	p.R36S	0.899	123	0%	71	25.4%	0	-	possibly_damaging(0.827)	deleterious(0.01)	deleterious(0.720)	HMMSmart_SM00034,superfamily_C-type lectin-like
BCMO1	53630	genome.wustl.edu	37	16	81298346	81298346	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017429.2	+1	reviewed	p.K191	1.000	350	0%	127	20.5%	15	20%	-	-	-	HMMPfam_RPE65
GAN	8139	genome.wustl.edu	37	16	81390393	81390393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022041.3	+1	reviewed	p.H213N	1.000	185	0%	154	18.8%	0	-	probably_damaging(0.991)	tolerated(0.09)	deleterious(0.740)	HMMPfam_BACK
GAN	8139	genome.wustl.edu	37	16	81390524	81390524	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022041.3	+1	reviewed	p.P256	0.053	120	0%	83	14.5%	0	-	-	-	-	superfamily_Gal_oxid_central
GAN	8139	genome.wustl.edu	37	16	81411106	81411106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022041.3	+1	reviewed	p.R567C	1.000	288	0%	101	15.8%	2	50%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_Kelch
CMIP	80790	genome.wustl.edu	37	16	81727074	81727074	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198390.2	+1	validated	p.A504	0.005	107	0%	114	29.8%	22	31.8%	-	-	-	NULL
PLCG2	5336	genome.wustl.edu	37	16	81939032	81939032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002661.2	+1	validated	p.D463N	0.998	140	0%	80	18.8%	4	0%	benign(0.344)	tolerated(0.5)	neutral(0.118)	superfamily_PLC-like_Pdiesterase_TIM-brl
PLCG2	5336	genome.wustl.edu	37	16	81942071	81942071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002661.2	+1	validated	p.K536N	0.977	206	0%	194	22.2%	13	7.6%	benign(0.328)	deleterious(0)	deleterious(0.547)	HMMPfam_SH2,HMMSmart_SH2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729,superfamily_SSF55550
PLCG2	5336	genome.wustl.edu	37	16	81944326	81944326	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002661.2	+1	validated	e17+1	1.000	83	1.2%	33	30.3%	0	-	-	-	-	-
CDH13	1012	genome.wustl.edu	37	16	82660742	82660742	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001257.3	+1	reviewed	p.Q15	1.000	59	0%	71	23.9%	0	-	unknown(0)	-	-	NULL
CDH13	1012	genome.wustl.edu	37	16	83065694	83065694	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001257.3	+1	reviewed	p.G79	0.000	190	0%	44	18.2%	0	-	-	-	-	HMMPfam_Cadherin_pro,superfamily_Cadherin
OSGIN1	29948	genome.wustl.edu	37	16	83999343	83999343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013370.3	+1	validated	p.V472I	0.003	165	0%	250	16.8%	5	40%	benign(0.089)	tolerated(0.25)	neutral(0.043)	superfamily_FAD/NAD(P)-binding domain
SLC38A8	146167	genome.wustl.edu	37	16	84050856	84050856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080442.1	-1	provisional	p.S281F	1.000	65	0%	68	26.5%	0	-	probably_damaging(0.954)	deleterious(0.04)	deleterious(0.746)	HMMPfam_Aa_trans
MBTPS1	8720	genome.wustl.edu	37	16	84092952	84092952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003791.2	-1	reviewed	p.R929H	1.000	91	0%	103	25.2%	110	34.5%	benign(0)	tolerated(1)	-	NULL
HSDL1	83693	genome.wustl.edu	37	16	84163765	84163765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031463.4	-1	validated	p.Q164H	0.742	222	0%	213	20.2%	15	40%	probably_damaging(0.961)	tolerated(0.15)	deleterious(0.645)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
DNAAF1	123872	genome.wustl.edu	37	16	84182641	84182641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178452.4	+1	reviewed	p.G52S	0.000	266	0%	228	21.1%	2	100%	benign(0.009)	tolerated(0.15)	neutral(0.241)	NULL
DNAAF1	123872	genome.wustl.edu	37	16	84183883	84183883	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178452.4	+1	reviewed	p.L96	0.998	330	0%	320	19.4%	0	-	-	-	-	NULL
DNAAF1	123872	genome.wustl.edu	37	16	84188303	84188303	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178452.4	+1	reviewed	p.L158	0.998	284	0%	176	15.3%	1	0%	-	-	-	HMMSmart_SM00365,superfamily_Outer arm dynein light chain 1
DNAAF1	123872	genome.wustl.edu	37	16	84199561	84199561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000439133	+1	known	p.R94C	0.000	264	0%	121	25.6%	0	-	-	-	-	NULL
DNAAF1	123872	genome.wustl.edu	37	16	84209692	84209692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178452.4	+1	reviewed	p.R618W	0.000	130	0%	137	26.3%	4	50%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
TAF1C	9013	genome.wustl.edu	37	16	84215831	84215831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005679.2	-1	reviewed	p.A233D	0.000	20	0%	24	20.8%	12	25%	possibly_damaging(0.504)	tolerated(0.21)	neutral(0.213)	NULL
TAF1C	9013	genome.wustl.edu	37	16	84216894	84216894	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005679.2	-1	reviewed	p.L122	0.998	154	0%	208	15.4%	11	18.1%	-	-	-	NULL
ADAD2	161931	genome.wustl.edu	37	16	84228181	84228181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139174.3	+1	validated	p.E256D	0.998	62	0%	108	22.2%	0	-	benign(0.381)	tolerated(0.28)	neutral(0.153)	NULL
ADAD2	161931	genome.wustl.edu	37	16	84229294	84229294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139174.3	+1	validated	p.R430H	0.671	30	3.3%	25	24%	1	0%	benign(0.002)	tolerated(0.4)	neutral(0.016)	HMMPfam_A_deamin
KCNG4	93107	genome.wustl.edu	37	16	84256245	84256245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172347.1	-1	reviewed	p.V380M	1.000	10	0.000	9	0.556	0	-	probably_damaging(0.987)	tolerated(0.32)	neutral(0.461)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
COTL1	23406	genome.wustl.edu	37	16	84600469	84600469	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021149.2	-1	reviewed	p.Y137	0.987	164	0%	143	24.5%	257	5%	-	-	-	superfamily_Actin depolymerizing proteins
KLHL36	79786	genome.wustl.edu	37	16	84684524	84684524	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024731.2	+1	provisional	p.S17	1.000	279	0%	331	20.5%	5	0%	-	-	-	NULL
KLHL36	79786	genome.wustl.edu	37	16	84690858	84690858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024731.2	+1	provisional	p.L149M	1.000	72	0%	76	28.9%	21	33.3%	possibly_damaging(0.912)	deleterious(0.02)	deleterious(0.746)	HMMPfam_BACK
KLHL36	79786	genome.wustl.edu	37	16	84693479	84693479	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024731.2	+1	provisional	p.Y417	0.971	152	0%	204	16.7%	12	8.3%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
USP10	9100	genome.wustl.edu	37	16	84778963	84778963	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005153.2	+1	reviewed	p.S292	0.916	83	0%	51	19.6%	48	50%	-	-	-	NULL
CRISPLD2	83716	genome.wustl.edu	37	16	84872320	84872320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031476.3	+1	validated	p.Q73H	0.000	62	0%	48	35.4%	0	-	benign(0.072)	deleterious(0)	neutral(0.450)	HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like
CRISPLD2	83716	genome.wustl.edu	37	16	84940324	84940324	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000448503	+1	known	p.C107	0.016	114	0%	114	21.1%	2	0%	-	-	-	NULL
ZDHHC7	55625	genome.wustl.edu	37	16	85015574	85015574	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145548.1	-1	validated	p.T151	0.732	308	0%	270	20%	25	64%	-	-	-	NULL
ZDHHC7	55625	genome.wustl.edu	37	16	85022377	85022377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145548.1	-1	validated	p.L140I	0.000	117	0%	94	26.6%	4	50%	benign(0.001)	tolerated(0.36)	neutral(0.020)	NULL
FAM92B	339145	genome.wustl.edu	37	16	85138999	85138999	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198491.1	-1	predicted	p.S157	1.000	54	0%	63	28.6%	4	25%	-	-	-	HMMPfam_DUF1208
FAM92B	339145	genome.wustl.edu	37	16	85143993	85143993	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198491.1	-1	predicted	p.L32	1.000	66	0%	61	14.8%	1	0%	-	-	-	HMMPfam_DUF1208
C16orf74	404550	genome.wustl.edu	37	16	85743855	85743855	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206967.2	-1	validated	p.N29	0.892	36	0%	24	29.2%	4	25%	-	-	-	NULL
MIR1910	100302261	genome.wustl.edu	37	16	85775278	85775278	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000410258	-1	known	NULL	0.000	163	0%	154	24%	0	-	-	-	-	-
IRF8	3394	genome.wustl.edu	37	16	85953808	85953808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002163.2	+1	reviewed	p.R361H	1.000	157	0%	189	23.8%	36	0%	benign(0.32)	tolerated(0.15)	neutral(0.341)	superfamily_SMAD_FHA,HMMPfam_IRF-3
MTHFSD	64779	genome.wustl.edu	37	16	86585719	86585719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022764.2	-1	validated	p.L52I	1.000	363	0%	345	20.6%	2	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_5-FTHF_cyc-lig,superfamily_SSF100950
ZCCHC14	23174	genome.wustl.edu	37	16	87445352	87445352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015144.2	-1	validated	p.S855I	0.000	50	0%	56	14.3%	10	30%	possibly_damaging(0.928)	deleterious(0.05)	deleterious(0.721)	NULL
ZCCHC14	23174	genome.wustl.edu	37	16	87446105	87446105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015144.2	-1	validated	p.R604M	1.000	49	0%	45	31.1%	6	33.3%	unknown(0)	tolerated(0.11)	-	NULL
JPH3	57338	genome.wustl.edu	37	16	87678480	87678480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020655.2	+1	reviewed	p.K333N	1.000	76	0%	74	20.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
BANP	54971	genome.wustl.edu	37	16	88052090	88052090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_079837.2	+1	reviewed	p.R199C	1.000	77	0%	128	25.8%	30	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF469	84627	genome.wustl.edu	37	16	88498114	88498114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127464.1	+1	reviewed	p.S1384R	0.001	17	0%	37	16.2%	0	-	benign(0.156)	deleterious(0)	neutral(0.459)	NULL
ZNF469	84627	genome.wustl.edu	37	16	88498350	88498350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127464.1	+1	reviewed	p.T1463M	0.000	150	0.7%	174	14.9%	1	0%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
ZNF469	84627	genome.wustl.edu	37	16	88502446	88502446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127464.1	+1	reviewed	p.E2828D	0.000	29	0%	42	11.9%	3	0%	benign(0.105)	deleterious(0)	neutral(0.453)	NULL
ZC3H18	124245	genome.wustl.edu	37	16	88643760	88643760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144604.3	+1	validated	p.K77E	1.000	106	0%	118	17.8%	20	50%	unknown(0)	tolerated(0.53)	-	NULL
CYBA	1535	genome.wustl.edu	37	16	88713578	88713578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000101.2	-1	reviewed	p.A45V	0.987	59	0%	91	18.7%	1483	48.8%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_Cytochrom_B558a
PIEZO1	9780	genome.wustl.edu	37	16	88786833	88786833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000451779	-1	known	p.V1507A	0.998	86	1.2%	95	17.9%	20	35%	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	NULL
PIEZO1	9780	genome.wustl.edu	37	16	88787054	88787054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000451779	-1	known	p.G1461E	0.012	146	0%	219	24.7%	5	20%	benign(0.053)	tolerated(1)	neutral(0.004)	NULL
PIEZO1	9780	genome.wustl.edu	37	16	88787598	88787598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000451779	-1	known	p.A1419S	0.000	40	0%	66	27.3%	10	10%	benign(0.001)	tolerated(1)	-	NULL
PIEZO1	9780	genome.wustl.edu	37	16	88787766	88787766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000451779	-1	known	p.G1363R	0.027	75	0%	77	22.1%	8	12.5%	benign(0.008)	tolerated(0.52)	neutral(0.009)	NULL
PIEZO1	9780	genome.wustl.edu	37	16	88798796	88798796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000451779	-1	known	p.L517I	1.000	32	0%	19	31.6%	0	-	benign(0.039)	tolerated(1)	neutral(0.002)	NULL
PIEZO1	9780	genome.wustl.edu	37	16	88801194	88801194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000451779	-1	known	p.L158M	1.000	46	0%	33	21.2%	6	0%	possibly_damaging(0.885)	tolerated(0.23)	neutral(0.387)	NULL
LOC100289580	100289580	genome.wustl.edu	37	16	88805225	88805225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344125.1	+1	model	p.S141I	0.000	6	0.000	16	0.438	1	100%	-	-	-	NULL
TRAPPC2L	51693	genome.wustl.edu	37	16	88925065	88925065	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016209.3	+1	validated	p.N24	0.170	144	0%	135	25.2%	215	42.7%	-	-	-	HMMPfam_Sedlin_N,superfamily_SNARE-like
ACSF3	197322	genome.wustl.edu	37	16	89211713	89211713	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127214.1	+1	validated	p.R469*	0.996	286	0.3%	275	21.5%	45	6.6%	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
CDH15	1013	genome.wustl.edu	37	16	89254647	89254647	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004933.2	+1	reviewed	p.I311S	0.359	48	2.1%	55	30.9%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH15	1013	genome.wustl.edu	37	16	89256690	89256690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004933.2	+1	reviewed	p.V340M	0.824	49	0%	41	14.6%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
ZNF778	197320	genome.wustl.edu	37	16	89289664	89289664	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182531.2	+1	validated	p.E73*	0.993	396	0%	312	20.5%	1	0%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF778	197320	genome.wustl.edu	37	16	89294208	89294208	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182531.2	+1	validated	p.P476	0.718	195	0%	136	27.9%	1	100%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF778	197320	genome.wustl.edu	37	16	89294514	89294514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182531.2	+1	validated	p.E578D	0.001	266	0%	163	27.6%	5	20%	benign(0.002)	tolerated(0.61)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ANKRD11	29123	genome.wustl.edu	37	16	89348321	89348321	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013275.4	-1	validated	p.G1543	0.000	336	0%	341	17.6%	20	50%	-	-	-	superfamily_Ankyrin repeat
ANKRD11	29123	genome.wustl.edu	37	16	89355077	89355077	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013275.4	-1	validated	p.G201	1.000	114	0.9%	112	28.6%	18	16.6%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SPG7	6687	genome.wustl.edu	37	16	89590428	89590428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003119.2	+1	reviewed	p.R131S	0.034	82	0%	103	30.1%	31	41.9%	unknown(0)	deleterious(0.04)	-	NULL
SPG7	6687	genome.wustl.edu	37	16	89598349	89598349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003119.2	+1	reviewed	p.P342L	1.000	86	0%	84	20.2%	29	34.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
CPNE7	27132	genome.wustl.edu	37	16	89644027	89644027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014427.4	+1	reviewed	p.E85D	1.000	161	0%	244	11.9%	2	100%	possibly_damaging(0.948)	tolerated(0.05)	deleterious(0.736)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CPNE7	27132	genome.wustl.edu	37	16	89644035	89644035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014427.4	+1	reviewed	p.R88M	1.000	161	0%	219	24.2%	2	0%	possibly_damaging(0.904)	deleterious(0)	deleterious(0.803)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
DPEP1	1800	genome.wustl.edu	37	16	89704063	89704063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128141.1	+1	validated	p.V293M	0.934	384	0%	278	19.1%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_Peptidase_M19,superfamily_SSF51556
C16orf7	9605	genome.wustl.edu	37	16	89774905	89774905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004913.2	-1	validated	p.V578M	1.000	28	3.6%	59	25.4%	18	11.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_VPS9,superfamily_SSF109993
C16orf7	9605	genome.wustl.edu	37	16	89776309	89776309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004913.2	-1	validated	p.L422M	1.000	81	0%	73	24.7%	14	64.2%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	superfamily_SSF109993
FANCA	2175	genome.wustl.edu	37	16	89828363	89828363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000135.2	-1	reviewed	p.T949N	0.076	353	0.3%	256	19.1%	13	30.7%	possibly_damaging(0.912)	tolerated(0.09)	deleterious(0.660)	NULL
FANCA	2175	genome.wustl.edu	37	16	89833560	89833560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000135.2	-1	reviewed	p.L864I	0.967	356	0%	215	26.5%	10	30%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
SPIRE2	84501	genome.wustl.edu	37	16	89927195	89927195	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032451.1	+1	validated	p.L523	1.000	50	0%	86	22.1%	10	30%	-	-	-	NULL
SPIRE2	84501	genome.wustl.edu	37	16	89936662	89936662	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032451.1	+1	validated	p.R709	0.969	167	0%	134	25.4%	27	66.6%	-	-	-	NULL
TCF25	22980	genome.wustl.edu	37	16	89977513	89977513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014972.2	+1	validated	p.A633D	0.300	44	0%	49	24.5%	143	32.8%	possibly_damaging(0.625)	tolerated(0.32)	neutral(0.242)	NULL
TUBB3	10381	genome.wustl.edu	37	16	90001817	90001817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006086.2	+1	validated	p.R320C	1.000	114	0.9%	136	16.2%	57	31.5%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
LOC100289615	100289615	genome.wustl.edu	37	16	90023867	90023867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344126.1	-1	model	p.L435M	0.000	22	0%	30	30%	0	-	-	-	-	NULL
DEF8	54849	genome.wustl.edu	37	16	90028254	90028254	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207514.1	+1	validated	p.W324*	1.000	57	0%	65	23.1%	4	25%	-	-	-	NULL
LOC100289615	100289615	genome.wustl.edu	37	16	90030548	90030548	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344126.1	-1	model	p.L197	0.000	51	0%	44	11.4%	0	-	-	-	-	NULL
LOC100289615	100289615	genome.wustl.edu	37	16	90030838	90030838	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344126.1	-1	model	e2+1	0.000	53	0%	80	17.5%	1	100%	-	-	-	-
CENPBD1	92806	genome.wustl.edu	37	16	90037961	90037961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145039.2	-1	validated	p.R124C	0.003	276	0.4%	300	20.3%	9	44.4%	probably_damaging(0.988)	tolerated(0.13)	deleterious(0.690)	superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind
RNMTL1	55178	genome.wustl.edu	37	17	685641	685641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018146.2	+1	provisional	p.A8V	0.000	37	0%	36	16.7%	14	7.1%	benign(0)	tolerated(1)	-	NULL
RNMTL1	55178	genome.wustl.edu	37	17	694851	694851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018146.2	+1	provisional	p.L269M	0.940	187	0%	189	21.2%	32	40.6%	benign(0.165)	tolerated(0.06)	neutral(0.338)	HMMPfam_SpoU_methylase,superfamily_SSF75217
MYO1C	4641	genome.wustl.edu	37	17	1373957	1373957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080779.1	-1	reviewed	p.G747C	1.000	71	0%	75	29.3%	138	34%	benign(0.35)	deleterious(0.02)	deleterious(0.494)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
INPP5K	51763	genome.wustl.edu	37	17	1399386	1399386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016532.3	-1	reviewed	p.R420C	0.061	126	0%	144	21.5%	112	41%	possibly_damaging(0.833)	tolerated(0.07)	deleterious(0.637)	NULL
INPP5K	51763	genome.wustl.edu	37	17	1401329	1401329	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016532.3	-1	reviewed	p.P288	0.000	74	0%	79	27.8%	88	43.1%	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
SLC43A2	124935	genome.wustl.edu	37	17	1478927	1478927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152346.1	-1	provisional	p.G561S	1.000	82	0%	87	27.6%	14	7.1%	possibly_damaging(0.822)	tolerated(0.12)	deleterious(0.572)	NULL
SCARF1	8578	genome.wustl.edu	37	17	1540138	1540138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003693.2	-1	reviewed	p.D500N	1.000	73	0%	85	21.2%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRPF8	10594	genome.wustl.edu	37	17	1557250	1557250	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006445.3	-1	reviewed	p.I2016	1.000	427	0%	366	17.8%	190	34.7%	-	-	-	NULL
PRPF8	10594	genome.wustl.edu	37	17	1578603	1578603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006445.3	-1	reviewed	p.T968M	1.000	282	0.4%	215	26%	17	35.2%	possibly_damaging(0.629)	tolerated(0.06)	deleterious(0.542)	NULL
WDR81	124997	genome.wustl.edu	37	17	1630734	1630734	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000409644	+1	known	p.Q827	0.999	31	0%	33	18.2%	7	42.8%	-	-	-	superfamily_WD40 repeat-like
WDR81	124997	genome.wustl.edu	37	17	1637429	1637429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000409644	+1	known	p.V1700I	0.785	23	0%	21	28.6%	20	30%	benign(0.014)	tolerated(0.65)	neutral(0.004)	HMMSmart_SM00320,superfamily_WD40 repeat-like
SERPINF2	5345	genome.wustl.edu	37	17	1650427	1650427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000934.3	+1	reviewed	p.R161Q	0.293	18	0%	19	21.1%	0	-	benign(0.429)	tolerated(0.19)	neutral(0.189)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINF2	5345	genome.wustl.edu	37	17	1651969	1651969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000934.3	+1	reviewed	p.V265M	0.999	89	0%	98	15.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINF1	5176	genome.wustl.edu	37	17	1680659	1680659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002615.4	+1	validated	p.Q392H	0.642	201	0%	168	11.3%	55	0%	benign(0.002)	tolerated(0.33)	neutral(0.024)	HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN,superfamily_Serpins
RPA1	6117	genome.wustl.edu	37	17	1792103	1792103	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002945.3	+1	validated	p.C503	0.992	197	0%	96	15.6%	119	36.9%	-	-	-	HMMPfam_Rep_fac-A_C,superfamily_Nucleic acid-binding proteins
KIAA0664	23277	genome.wustl.edu	37	17	2598206	2598206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015229.3	-1	validated	p.L894I	1.000	84	0%	176	26.7%	50	48%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
KIAA0664	23277	genome.wustl.edu	37	17	2603721	2603721	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015229.3	-1	validated	p.R369	1.000	54	0%	93	28%	36	41.6%	-	-	-	NULL
RAP1GAP2	23108	genome.wustl.edu	37	17	2894657	2894657	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015085.4	+1	reviewed	p.L294	0.214	400	0%	233	21.9%	7	85.7%	-	-	-	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
OR1D4	653166	genome.wustl.edu	37	17	2966546	2966546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003552.2	-1	provisional	p.A137V	0.998	311	0.3%	104	19.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR3A2	4995	genome.wustl.edu	37	17	3181804	3181804	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002551.3	-1	validated	p.S142	0.003	349	0%	151	16.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR1E2	8388	genome.wustl.edu	37	17	3336673	3336673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003554.1	-1	provisional	p.A155T	0.022	217	0%	181	23.8%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_7tm_1,superfamily_SSF81321
TRPV3	162514	genome.wustl.edu	37	17	3436047	3436047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145068.2	-1	reviewed	p.M323I	1.000	185	0%	164	20.7%	0	-	benign(0.001)	tolerated(0.41)	neutral(0.015)	superfamily_Ankyrin repeat
CTNS	1497	genome.wustl.edu	37	17	3560044	3560044	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031681.2	+1	reviewed	p.A212	0.002	120	0%	107	27.1%	21	52.3%	-	-	-	NULL
GSG2	83903	genome.wustl.edu	37	17	3629234	3629234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031965.2	+1	validated	p.L669I	1.000	310	0%	230	20.9%	14	57.1%	benign(0.262)	tolerated(0.12)	neutral(0.288)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ITGAE	3682	genome.wustl.edu	37	17	3659187	3659187	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002208.4	-1	reviewed	p.T392	0.000	133	0%	144	21.5%	20	0%	-	-	-	superfamily_SSF69318
C17orf85	55421	genome.wustl.edu	37	17	3717771	3717771	+	Missense_Mutation	SNP	C	C	T	rs184111975	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114118.1	-1	provisional	p.R491H	1.000	183	0%	135	20%	19	52.6%	possibly_damaging(0.646)	deleterious(0.04)	deleterious(0.576)	NULL
C17orf85	55421	genome.wustl.edu	37	17	3724615	3724615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114118.1	-1	provisional	p.R310W	1.000	199	0%	145	35.2%	9	55.5%	benign(0)	deleterious(0)	neutral(0.445)	NULL
C17orf85	55421	genome.wustl.edu	37	17	3732600	3732600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114118.1	-1	provisional	p.D140Y	1.000	482	0%	292	21.6%	4	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_DUF2414
CAMKK1	84254	genome.wustl.edu	37	17	3783646	3783646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172207.2	-1	reviewed	p.E302K	1.000	56	0%	62	24.2%	1	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
P2RX1	5023	genome.wustl.edu	37	17	3808550	3808550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002558.2	-1	reviewed	p.Q83H	1.000	44	0%	31	16.1%	0	-	benign(0.01)	tolerated(0.12)	neutral(0.261)	HMMPfam_P2X_receptor
ATP2A3	489	genome.wustl.edu	37	17	3832631	3832631	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174953.1	-1	reviewed	p.P951	0.998	32	0%	27	25.9%	32	0%	-	-	-	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
ATP2A3	489	genome.wustl.edu	37	17	3846705	3846705	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174953.1	-1	reviewed	p.R467*	1.000	53	0%	82	17.1%	21	4.7%	-	-	-	HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ATP2A3	489	genome.wustl.edu	37	17	3853989	3853989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174953.1	-1	reviewed	p.T181M	1.000	165	0%	194	20.1%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
ATP2A3	489	genome.wustl.edu	37	17	3854592	3854592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174953.1	-1	reviewed	p.R139M	1.000	41	0%	60	20%	16	0%	probably_damaging(0.961)	tolerated(0.07)	deleterious(0.723)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
ZZEF1	23140	genome.wustl.edu	37	17	3920981	3920981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015113.3	-1	validated	p.P2562L	0.971	190	0%	142	21.1%	10	50%	possibly_damaging(0.903)	tolerated(0.08)	deleterious(0.658)	NULL
ZZEF1	23140	genome.wustl.edu	37	17	3992106	3992106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015113.3	-1	validated	p.L703I	1.000	210	0%	110	26.4%	2	50%	benign(0.421)	tolerated(0.09)	neutral(0.433)	NULL
ZZEF1	23140	genome.wustl.edu	37	17	4007954	4007954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015113.3	-1	validated	p.V516F	1.000	299	0%	100	20%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ANKFY1	51479	genome.wustl.edu	37	17	4085547	4085547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016376.3	-1	validated	p.P685S	0.996	75	0%	84	19%	10	30%	benign(0.013)	tolerated(0.67)	neutral(0.003)	HMMPfam_Ank,superfamily_ANK
UBE2G1	7326	genome.wustl.edu	37	17	4210320	4210320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003342.4	-1	reviewed	p.L49I	1.000	280	0%	152	19.7%	28	39.2%	benign(0.005)	tolerated(0.17)	neutral(0.059)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
MYBBP1A	10514	genome.wustl.edu	37	17	4442768	4442768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105538.1	-1	validated	p.S1310N	0.993	146	0%	180	22.8%	75	12%	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	NULL
MYBBP1A	10514	genome.wustl.edu	37	17	4442772	4442772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105538.1	-1	validated	p.P1309T	0.817	138	0%	181	21.5%	71	61.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GGT6	124975	genome.wustl.edu	37	17	4461567	4461567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122890.1	-1	validated	p.D409Y	0.901	136	0.7%	140	25.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G_glu_transpept
GGT6	124975	genome.wustl.edu	37	17	4461729	4461729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122890.1	-1	validated	p.A355T	0.980	59	0%	54	24.1%	1	0%	benign(0)	tolerated(1)	-	HMMPfam_G_glu_transpept
SMTNL2	342527	genome.wustl.edu	37	17	4498569	4498569	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114974.1	+1	validated	p.A312	0.086	38	0%	19	21.1%	5	20%	-	-	-	NULL
PELP1	27043	genome.wustl.edu	37	17	4579336	4579336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014389.2	-1	validated	p.M325I	1.000	179	0%	165	22.4%	52	50%	benign(0.099)	tolerated(0.1)	neutral(0.294)	NULL
PELP1	27043	genome.wustl.edu	37	17	4580106	4580106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014389.2	-1	validated	p.G215D	1.000	206	0%	181	18.2%	51	39.2%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
ARRB2	409	genome.wustl.edu	37	17	4623696	4623696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004313.3	+1	reviewed	p.S337F	0.999	259	0%	263	23.2%	68	17.6%	possibly_damaging(0.742)	tolerated(0.33)	neutral(0.296)	HMMPfam_Arrestin_C,superfamily_E set domains
PLD2	5338	genome.wustl.edu	37	17	4721299	4721299	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002663.3	+1	validated	p.V606	0.998	93	0%	125	21.6%	14	28.5%	-	-	-	superfamily_Phospholipase D/nuclease
PLD2	5338	genome.wustl.edu	37	17	4721881	4721881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002663.3	+1	validated	p.A701V	1.000	225	0%	210	17.1%	24	0%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	superfamily_Phospholipase D/nuclease
PLD2	5338	genome.wustl.edu	37	17	4722099	4722099	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002663.3	+1	validated	p.L718	0.782	221	0%	229	28.4%	19	68.4%	-	-	-	superfamily_Phospholipase D/nuclease
PLD2	5338	genome.wustl.edu	37	17	4725128	4725128	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002663.3	+1	validated	p.R835*	0.991	245	0%	312	24.7%	29	20.6%	-	-	-	NULL
MINK1	50488	genome.wustl.edu	37	17	4799329	4799329	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153827.4	+1	reviewed	p.I1132	0.977	176	0%	188	19.1%	65	47.6%	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
CHRNE	1145	genome.wustl.edu	37	17	4805759	4805759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000080.3	-1	reviewed	p.V74I	1.000	495	0%	527	22%	2	0%	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GP1BA	2811	genome.wustl.edu	37	17	4836064	4836064	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000173.5	+1	reviewed	p.S55R	0.000	169	0%	190	18.9%	0	-	possibly_damaging(0.783)	tolerated(0.08)	deleterious(0.593)	superfamily_SSF52058
GP1BA	2811	genome.wustl.edu	37	17	4837351	4837351	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000173.5	+1	reviewed	p.P471	0.000	184	0%	174	21.8%	0	-	-	-	-	NULL
SLC25A11	8402	genome.wustl.edu	37	17	4841065	4841065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003562.4	-1	validated	p.A306T	1.000	64	0%	101	24.8%	202	37.1%	benign(0.064)	tolerated(0.38)	neutral(0.022)	HMMPfam_Mito_carr
SPAG7	9552	genome.wustl.edu	37	17	4863146	4863146	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004890.2	-1	validated	p.S161	0.802	75	0%	102	20.6%	163	34.9%	-	-	-	NULL
CAMTA2	23125	genome.wustl.edu	37	17	4877707	4877707	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015099.3	-1	validated	p.C663*	0.577	179	0%	216	19.4%	13	30.7%	-	-	-	NULL
INCA1	388324	genome.wustl.edu	37	17	4892898	4892898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000396829	-1	known	p.L74F	0.907	122	0%	186	25.8%	5	20%	possibly_damaging(0.45)	tolerated(0.21)	neutral(0.192)	NULL
KIF1C	10749	genome.wustl.edu	37	17	4923920	4923920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006612.5	+1	validated	p.Q628H	1.000	89	0%	58	12.1%	71	18.3%	possibly_damaging(0.832)	tolerated(0.09)	deleterious(0.613)	NULL
KIF1C	10749	genome.wustl.edu	37	17	4927262	4927262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006612.5	+1	validated	p.A1043V	0.674	88	0%	84	15.5%	116	33.6%	possibly_damaging(0.578)	tolerated(0.06)	deleterious(0.521)	NULL
SLC52A1	55065	genome.wustl.edu	37	17	4937526	4937526	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001104577.1	-1	validated	p.V86	0.875	119	0%	83	18.1%	1	100%	-	-	-	NULL
USP6	9098	genome.wustl.edu	37	17	5072326	5072326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004505.2	+1	validated	p.A1165T	0.361	169	0%	101	23.8%	0	-	benign(0.02)	tolerated(0.36)	neutral(0.021)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP6	9098	genome.wustl.edu	37	17	5074001	5074001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004505.2	+1	validated	p.R1249W	0.732	189	0%	142	16.9%	0	-	possibly_damaging(0.448)	deleterious(0.02)	deleterious(0.529)	HMMPfam_UCH,superfamily_Cysteine proteinases
ZNF594	84622	genome.wustl.edu	37	17	5086640	5086640	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032530.1	-1	validated	p.F304	0.724	273	0%	287	17.1%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RABEP1	9135	genome.wustl.edu	37	17	5257672	5257672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004703.4	+1	validated	p.R328G	0.967	495	0%	208	21.2%	11	54.5%	benign(0.009)	deleterious(0.01)	neutral(0.406)	NULL
RABEP1	9135	genome.wustl.edu	37	17	5276635	5276635	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004703.4	+1	validated	p.Q637	1.000	394	0%	173	23.7%	22	40.9%	-	-	-	HMMPfam_Rab5-bind
RABEP1	9135	genome.wustl.edu	37	17	5286512	5286512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004703.4	+1	validated	p.E861D	1.000	150	0%	57	19.3%	16	37.5%	probably_damaging(0.994)	tolerated(0.32)	deleterious(0.476)	NULL
NUP88	4927	genome.wustl.edu	37	17	5302932	5302932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002532.3	-1	reviewed	p.A411S	1.000	222	0%	105	15.2%	65	40%	benign(0.053)	tolerated(0.82)	neutral(0.004)	HMMPfam_Nup88
C1QBP	708	genome.wustl.edu	37	17	5341581	5341581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001212.3	-1	reviewed	p.F82S	1.000	421	0.2%	570	15.1%	77	23.3%	possibly_damaging(0.914)	deleterious(0)	deleterious(0.810)	superfamily_MAM33
NLRP1	22861	genome.wustl.edu	37	17	5418312	5418312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033004.3	-1	reviewed	p.S1395L	0.002	149	0.7%	83	20.5%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CARD,superfamily_DEATH domain
WSCD1	23302	genome.wustl.edu	37	17	5983982	5983982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015253.1	+1	validated	p.A2T	1.000	37	0%	48	29.2%	6	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
WSCD1	23302	genome.wustl.edu	37	17	6023676	6023676	+	Missense_Mutation	SNP	G	G	A	rs191802540	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015253.1	+1	validated	p.V475I	0.989	60	0%	68	16.2%	6	33.3%	probably_damaging(0.98)	tolerated(0.49)	neutral(0.434)	superfamily_SSF52540
PITPNM3	83394	genome.wustl.edu	37	17	6367603	6367603	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031220.3	-1	reviewed	p.G681	1.000	58	0%	39	17.9%	5	40%	-	-	-	NULL
PITPNM3	83394	genome.wustl.edu	37	17	6367609	6367609	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031220.3	-1	reviewed	p.S679	0.990	57	0%	39	25.6%	3	66.6%	-	-	-	NULL
PITPNM3	83394	genome.wustl.edu	37	17	6374578	6374578	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031220.3	-1	reviewed	p.S509	0.000	43	0%	32	34.4%	0	-	-	-	-	HMMPfam_DDHD
KIAA0753	9851	genome.wustl.edu	37	17	6493229	6493229	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014804.2	-1	validated	p.R886*	0.000	171	0.6%	149	23.5%	4	0%	-	-	-	NULL
ALOX12	239	genome.wustl.edu	37	17	6913317	6913317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000697.2	+1	validated	p.R562W	1.000	217	0%	209	21.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
BCL6B	255877	genome.wustl.edu	37	17	6929795	6929795	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181844.3	+1	validated	p.C303	1.000	357	0%	300	24%	2	50%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
BCL6B	255877	genome.wustl.edu	37	17	6930373	6930373	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181844.3	+1	validated	p.H430	1.000	77	0%	76	28.9%	3	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SLC16A13	201232	genome.wustl.edu	37	17	6941941	6941941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201566.2	+1	validated	p.L272M	1.000	218	0%	208	26%	4	25%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ACADVL	37	genome.wustl.edu	37	17	7127194	7127194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000018.2	+1	reviewed	p.K444N	1.000	279	0%	277	19.5%	194	1%	possibly_damaging(0.889)	deleterious(0.02)	deleterious(0.732)	PatternScan_ACYL_COA_DH_2,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
ACADVL	37	genome.wustl.edu	37	17	7127321	7127321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000018.2	+1	reviewed	p.R456H	0.999	407	0.2%	462	19.7%	280	13.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
DVL2	1856	genome.wustl.edu	37	17	7133130	7133130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004422.2	-1	reviewed	p.S218I	1.000	70	0%	122	13.1%	29	24.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Dishevelled
PHF23	79142	genome.wustl.edu	37	17	7139879	7139879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024297.2	-1	validated	p.D123N	1.000	183	0%	218	21.1%	95	44.2%	possibly_damaging(0.86)	tolerated(0.25)	neutral(0.369)	NULL
NEURL4	84461	genome.wustl.edu	37	17	7219612	7219612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032442.2	-1	validated	p.A1507S	1.000	67	0%	79	21.5%	13	7.6%	possibly_damaging(0.543)	deleterious(0.04)	deleterious(0.533)	NULL
NEURL4	84461	genome.wustl.edu	37	17	7224119	7224119	+	Missense_Mutation	SNP	C	C	T	rs180776848	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032442.2	-1	validated	p.V1162I	0.996	102	0%	128	25.8%	4	50%	possibly_damaging(0.904)	deleterious(0.02)	deleterious(0.742)	HMMPfam_Neuralized,HMMSmart_SM00588
NEURL4	84461	genome.wustl.edu	37	17	7225195	7225195	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032442.2	-1	validated	p.E954*	1.000	154	0%	184	26.6%	6	0%	-	-	-	HMMPfam_Neuralized,HMMSmart_SM00588
NEURL4	84461	genome.wustl.edu	37	17	7227518	7227518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032442.2	-1	validated	p.Q657H	1.000	80	0%	68	30.9%	5	40%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
NEURL4	84461	genome.wustl.edu	37	17	7228215	7228215	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032442.2	-1	validated	p.K572	1.000	278	0%	318	24.2%	5	20%	-	-	-	HMMPfam_Neuralized,HMMSmart_SM00588
KCTD11	147040	genome.wustl.edu	37	17	7256535	7256535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002914.2	+1	validated	p.A92T	1.000	39	0%	49	22.4%	5	0%	possibly_damaging(0.935)	tolerated(0.85)	neutral(0.381)	NULL
NLGN2	57555	genome.wustl.edu	37	17	7318031	7318031	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020795.2	+1	reviewed	p.L236	1.000	116	0.9%	169	32.5%	6	33.3%	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
NLGN2	57555	genome.wustl.edu	37	17	7319011	7319011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020795.2	+1	reviewed	p.D407Y	1.000	236	0%	298	17.4%	8	37.5%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_COesterase,superfamily_SSF53474
SPEM1	374768	genome.wustl.edu	37	17	7323814	7323814	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199339.2	+1	provisional	p.I37	1.000	114	0%	128	13.3%	0	-	-	-	-	NULL
C17orf74	201243	genome.wustl.edu	37	17	7330358	7330358	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175734.4	+1	validated	p.Q350*	0.003	24	0%	26	46.2%	0	-	-	-	-	NULL
ZBTB4	57659	genome.wustl.edu	37	17	7366430	7366430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128833.1	-1	validated	p.R624H	0.990	87	0%	84	14.3%	12	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ZBTB4	57659	genome.wustl.edu	37	17	7366586	7366586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128833.1	-1	validated	p.A572V	0.997	78	0%	65	20%	19	31.5%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
POLR2A	5430	genome.wustl.edu	37	17	7402455	7402455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000937.3	+1	validated	p.P478Q	1.000	280	0%	216	14.8%	19	47.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RNA_pol_Rpb1_2,superfamily_SSF64484
POLR2A	5430	genome.wustl.edu	37	17	7417207	7417207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000937.3	+1	validated	p.S1875L	0.179	1187	0%	899	20.7%	286	39.5%	unknown(0)	deleterious(0.03)	-	HMMPfam_RNA_pol_Rpb1_R,PatternScan_RNA_POL_II_REPEAT
CD68	968	genome.wustl.edu	37	17	7483302	7483302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001251.2	+1	reviewed	p.T75M	0.001	744	0.1%	719	24.3%	164	3%	possibly_damaging(0.725)	tolerated(0.14)	deleterious(0.513)	HMMPfam_Lamp
SOX15	6665	genome.wustl.edu	37	17	7492776	7492776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006942.1	-1	reviewed	p.K73N	1.000	66	0%	56	10.7%	2	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
SHBG	6462	genome.wustl.edu	37	17	7535063	7535063	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040.3	+1	reviewed	p.R238*	0.850	185	0%	176	27.8%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
TP53	7157	genome.wustl.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343	byCluster	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000546.4	-1	reviewed	p.R273C	0.830	305	0%	226	20.8%	158	44.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_P53
TP53	7157	genome.wustl.edu	37	17	7577563	7577563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000546.4	-1	reviewed	p.S240G	1.000	180	0%	153	14.4%	137	29.9%	possibly_damaging(0.812)	tolerated(0.2)	neutral(0.354)	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53
TP53	7157	genome.wustl.edu	37	17	7579497	7579497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000546.4	-1	reviewed	p.P64T	0.000	94	0%	77	26%	98	35.7%	benign(0.012)	tolerated(0.58)	neutral(0.005)	NULL
DNAH2	146754	genome.wustl.edu	37	17	7637903	7637903	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020877.2	+1	validated	p.C285	1.000	220	0%	132	22.7%	0	-	-	-	-	HMMPfam_DHC_N1
DNAH2	146754	genome.wustl.edu	37	17	7668885	7668885	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020877.2	+1	validated	e20+2	1.000	169	0%	103	16.5%	0	-	-	-	-	-
DNAH2	146754	genome.wustl.edu	37	17	7678612	7678612	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020877.2	+1	validated	p.G1591	0.999	278	0%	179	18.4%	1	0%	-	-	-	HMMPfam_DHC_N2
DNAH2	146754	genome.wustl.edu	37	17	7679455	7679455	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020877.2	+1	validated	p.E1645	0.880	167	0%	74	16.2%	31	48.3%	-	-	-	NULL
DNAH2	146754	genome.wustl.edu	37	17	7691192	7691192	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020877.2	+1	validated	p.F2206	0.501	116	0%	122	17.2%	0	-	-	-	-	HMMPfam_AAA_5
KDM6B	23135	genome.wustl.edu	37	17	7750491	7750491	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080424.1	+1	provisional	p.G326	0.999	16	0%	20	30%	1	0%	-	-	-	NULL
KDM6B	23135	genome.wustl.edu	37	17	7754850	7754850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080424.1	+1	provisional	p.D1333E	1.000	167	0%	184	17.9%	28	28.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CHD3	1107	genome.wustl.edu	37	17	7806657	7806657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005271.2	+1	reviewed	p.A1247V	1.000	59	0%	69	21.7%	66	37.8%	possibly_damaging(0.553)	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
KCNAB3	9196	genome.wustl.edu	37	17	7827056	7827056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004732.2	-1	reviewed	p.G341C	1.000	177	0%	210	11.9%	1	0%	possibly_damaging(0.83)	deleterious(0)	deleterious(0.760)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
KCNAB3	9196	genome.wustl.edu	37	17	7829266	7829266	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004732.2	-1	reviewed	p.K159	1.000	401	0%	422	20.1%	3	0%	-	-	-	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
TRAPPC1	58485	genome.wustl.edu	37	17	7835143	7835143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021210.4	-1	reviewed	p.T2I	1.000	94	0%	142	16.9%	231	32.4%	possibly_damaging(0.894)	tolerated(0.18)	neutral(0.408)	superfamily_SNARE-like
CNTROB	116840	genome.wustl.edu	37	17	7849130	7849130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000380262	+1	known	p.V607M	0.802	113	0%	114	26.3%	34	32.3%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
GUCY2D	3000	genome.wustl.edu	37	17	7909826	7909826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000180.3	+1	reviewed	p.C391Y	0.998	66	0%	76	23.7%	0	-	possibly_damaging(0.811)	deleterious(0.04)	deleterious(0.654)	HMMPfam_ANF_receptor,superfamily_SSF53822
ALOX15B	247	genome.wustl.edu	37	17	7948905	7948905	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001141.2	+1	reviewed	p.F367	0.324	139	0%	120	23.3%	0	-	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxigenase
ALOXE3	59344	genome.wustl.edu	37	17	8011799	8011799	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021628.2	-1	reviewed	p.G557	0.734	82	0%	74	14.9%	0	-	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
ALOXE3	59344	genome.wustl.edu	37	17	8018328	8018328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021628.2	-1	reviewed	p.S161I	1.000	376	0%	366	18.9%	0	-	probably_damaging(0.996)	tolerated(0.22)	deleterious(0.504)	superfamily_Lipoxygenase
PER1	5187	genome.wustl.edu	37	17	8045175	8045175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002616.2	-1	reviewed	p.A1183D	1.000	97	0%	92	26.1%	15	46.6%	probably_damaging(0.989)	tolerated(0.21)	deleterious(0.483)	NULL
PER1	5187	genome.wustl.edu	37	17	8053376	8053376	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002616.2	-1	reviewed	p.R148*	1.000	149	0%	210	26.2%	1	0%	-	-	-	NULL
TMEM107	84314	genome.wustl.edu	37	17	8079300	8079300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032354.3	-1	validated	p.E44D	1.000	334	0%	343	19%	25	24%	possibly_damaging(0.775)	tolerated(0.46)	neutral(0.300)	NULL
AURKB	9212	genome.wustl.edu	37	17	8110190	8110190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004217.2	-1	validated	p.R139C	1.000	82	0%	64	21.9%	62	53.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CTC1	80169	genome.wustl.edu	37	17	8131585	8131585	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025099.5	-1	validated	p.H1189	0.001	197	0%	107	23.4%	35	34.2%	-	-	-	NULL
PFAS	5198	genome.wustl.edu	37	17	8161425	8161425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012393.2	+1	reviewed	p.G415D	1.000	68	0%	78	23.1%	14	35.7%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_PurM N-terminal domain-like
ARHGEF15	22899	genome.wustl.edu	37	17	8216372	8216372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173728.2	+1	reviewed	p.R245Q	0.123	38	0%	45	35.6%	1	0%	probably_damaging(0.976)	tolerated(0.08)	deleterious(0.718)	NULL
ARHGEF15	22899	genome.wustl.edu	37	17	8218236	8218236	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173728.2	+1	reviewed	p.G334	0.078	147	0%	164	20.7%	1	0%	-	-	-	NULL
MYH10	4628	genome.wustl.edu	37	17	8379143	8379143	+	Silent	SNP	C	C	T	rs139724230	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005964.1	-1	validated	p.T1970	0.041	369	0%	334	12.6%	69	17.3%	-	-	-	NULL
MYH10	4628	genome.wustl.edu	37	17	8397075	8397075	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005964.1	-1	validated	p.K1364	0.971	220	0%	150	19.3%	31	51.6%	-	-	-	HMMPfam_Myosin_tail_1
MYH10	4628	genome.wustl.edu	37	17	8421976	8421976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005964.1	-1	validated	p.A795V	1.000	243	0%	126	31.7%	21	42.8%	possibly_damaging(0.898)	deleterious(0)	deleterious(0.799)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH10	4628	genome.wustl.edu	37	17	8424198	8424198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005964.1	-1	validated	p.Q726H	1.000	318	0%	127	25.2%	15	33.3%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPDYE4	388333	genome.wustl.edu	37	17	8660777	8660777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128076.1	-1	provisional	p.S48F	0.000	134	0%	90	22.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MFSD6L	162387	genome.wustl.edu	37	17	8700939	8700939	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152599.3	-1	validated	p.Y500	0.000	61	0%	107	15.9%	1	100%	-	-	-	superfamily_MFS_gen_substrate_transporter
PIK3R5	23533	genome.wustl.edu	37	17	8784104	8784104	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142633.1	-1	validated	e18-1	1.000	185	0%	160	27.5%	0	-	-	-	-	-
NTN1	9423	genome.wustl.edu	37	17	9143093	9143093	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004822.2	+1	reviewed	p.D541	1.000	45	0%	52	28.8%	4	75%	-	-	-	superfamily_TIMP_like,HMMPfam_NTR,HMMSmart_C345C
WDR16	146845	genome.wustl.edu	37	17	9490146	9490146	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145054.4	+1	validated	p.D134	1.000	243	0%	217	23%	1	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
WDR16	146845	genome.wustl.edu	37	17	9515758	9515758	+	Silent	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145054.4	+1	validated	p.T329	0.987	313	0%	277	12.6%	2	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
GLP2R	9340	genome.wustl.edu	37	17	9792898	9792898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004246.1	+1	reviewed	p.L513P	0.000	33	0%	22	18.2%	0	-	benign(0.135)	tolerated(0.13)	neutral(0.264)	NULL
MYH13	8735	genome.wustl.edu	37	17	10204885	10204885	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003802.2	-1	validated	e38+1	1.000	240	0%	139	23.7%	0	-	-	-	-	-
MYH13	8735	genome.wustl.edu	37	17	10213082	10213082	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003802.2	-1	validated	p.S1574	0.579	178	0%	175	22.9%	0	-	-	-	-	HMMPfam_Myosin_tail_1
MYH13	8735	genome.wustl.edu	37	17	10243714	10243714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003802.2	-1	validated	p.D633E	0.017	142	0%	41	34.1%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH13	8735	genome.wustl.edu	37	17	10247367	10247367	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003802.2	-1	validated	p.T548	0.837	625	0%	223	13%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH13	8735	genome.wustl.edu	37	17	10258237	10258237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003802.2	-1	validated	p.M292I	1.000	387	0%	101	24.8%	0	-	benign(0.003)	tolerated(0.13)	neutral(0.253)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH8	4626	genome.wustl.edu	37	17	10310213	10310213	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002472.2	-1	reviewed	p.T683	1.000	365	0%	239	24.3%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH4	4622	genome.wustl.edu	37	17	10352055	10352055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017533.2	-1	validated	p.L1471I	1.000	196	0%	87	14.9%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Myosin_tail_1
MYH1	4619	genome.wustl.edu	37	17	10395864	10395864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005963.3	-1	reviewed	p.L1897F	1.000	334	0%	261	12.3%	0	-	possibly_damaging(0.692)	deleterious(0.01)	deleterious(0.653)	HMMPfam_Myosin_tail_1
MYH1	4619	genome.wustl.edu	37	17	10397987	10397987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005963.3	-1	reviewed	p.R1824C	0.999	630	0%	484	20.5%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Myosin_tail_1
MYH3	4621	genome.wustl.edu	37	17	10543993	10543993	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002470.2	-1	reviewed	p.L726	0.901	321	0%	165	10.3%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH3	4621	genome.wustl.edu	37	17	10551904	10551904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002470.2	-1	reviewed	p.K235N	1.000	467	0%	232	24.6%	0	-	possibly_damaging(0.856)	deleterious(0)	deleterious(0.775)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH3	4621	genome.wustl.edu	37	17	10553002	10553002	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002470.2	-1	reviewed	p.T178	0.995	464	0.2%	215	26%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
SCO1	6341	genome.wustl.edu	37	17	10596250	10596250	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004589.2	-1	reviewed	p.I131	0.004	130	0%	123	29.3%	32	31.2%	-	-	-	superfamily_Thiordxn-like_fd
PIRT	644139	genome.wustl.edu	37	17	10728876	10728876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001101387.1	-1	validated	p.S29R	1.000	94	0%	40	30%	0	-	possibly_damaging(0.836)	deleterious(0)	deleterious(0.764)	NULL
SHISA6	388336	genome.wustl.edu	37	17	11459084	11459084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207386.3	+1	validated	p.T327I	1.000	249	0%	271	22.9%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	NULL
DNAH9	1770	genome.wustl.edu	37	17	11604468	11604468	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001372.3	+1	reviewed	p.G1685	0.993	210	0%	68	14.7%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH9	1770	genome.wustl.edu	37	17	11607632	11607632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001372.3	+1	reviewed	p.A1755V	0.855	222	0%	82	15.9%	0	-	benign(0.095)	tolerated(0.29)	neutral(0.036)	NULL
DNAH9	1770	genome.wustl.edu	37	17	11631225	11631225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001372.3	+1	reviewed	p.V1934L	1.000	504	0%	226	20.8%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH9	1770	genome.wustl.edu	37	17	11650950	11650950	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001372.3	+1	reviewed	p.Q2159	1.000	195	0%	73	20.5%	0	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH9	1770	genome.wustl.edu	37	17	11672640	11672640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001372.3	+1	reviewed	p.L2516M	1.000	61	0%	51	19.6%	0	-	probably_damaging(0.956)	deleterious(0.03)	deleterious(0.764)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH9	1770	genome.wustl.edu	37	17	11711121	11711121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001372.3	+1	reviewed	p.K2831N	1.000	127	0%	27	22.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH9	1770	genome.wustl.edu	37	17	11774938	11774938	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001372.3	+1	reviewed	p.N3359	0.596	157	0%	85	16.5%	0	-	-	-	-	NULL
ZNF18	7566	genome.wustl.edu	37	17	11881274	11881274	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144680.2	-1	provisional	p.*550	0.015	270	0%	120	20.8%	15	66.6%	-	-	-	NULL
ZNF18	7566	genome.wustl.edu	37	17	11881641	11881641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144680.2	-1	provisional	p.R428I	0.999	200	0%	109	22%	10	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MYOCD	93649	genome.wustl.edu	37	17	12656290	12656290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153604.2	+1	reviewed	p.P562L	0.005	81	1.2%	37	13.5%	0	-	possibly_damaging(0.527)	deleterious(0)	deleterious(0.623)	NULL
ARHGAP44	9912	genome.wustl.edu	37	17	12883427	12883427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014859.4	+1	validated	p.G606C	0.991	88	0%	68	13.2%	5	60%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
ENSG00000205325	0	genome.wustl.edu	37	17	14683242	14683242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000379640	-1	known	p.S82N	0.006	169	0%	92	22.8%	0	-	unknown(0)	-	-	NULL
ENSG00000205325	0	genome.wustl.edu	37	17	14683463	14683463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000379640	-1	known	p.Q8H	0.001	188	0%	124	17.7%	0	-	unknown(0)	-	-	NULL
TEKT3	64518	genome.wustl.edu	37	17	15212016	15212016	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031898.2	-1	reviewed	p.P407	0.416	269	0.4%	146	17.1%	0	-	-	-	-	HMMPfam_Tektin
CDRT4	284040	genome.wustl.edu	37	17	15341395	15341395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173622.3	-1	validated	p.L51M	0.000	400	0%	119	22.7%	8	37.5%	possibly_damaging(0.634)	deleterious(0)	deleterious(0.666)	NULL
FAM18B2	201158	genome.wustl.edu	37	17	15441450	15441450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000438826	-1	known	p.Q203H	0.969	377	0%	271	12.9%	11	0%	possibly_damaging(0.708)	deleterious(0.01)	deleterious(0.661)	NULL
CDRT1	374286	genome.wustl.edu	37	17	15508559	15508559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006382.3	-1	provisional	p.G471R	1.000	445	0%	313	20.1%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
TBC1D26	353149	genome.wustl.edu	37	17	15645284	15645284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178571.4	+1	validated	p.S232L	0.001	165	0%	133	21.8%	0	-	benign(0)	deleterious(0)	neutral(0.445)	HMMSmart_SM00164
NCOR1	9611	genome.wustl.edu	37	17	15935669	15935669	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006311.2	-1	reviewed	p.R2422*	1.000	199	0%	86	22.1%	102	36.2%	-	-	-	NULL
NCOR1	9611	genome.wustl.edu	37	17	15952196	15952196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006311.2	-1	reviewed	p.L2167I	1.000	134	0%	90	11.1%	33	15.1%	probably_damaging(0.998)	tolerated(0.2)	deleterious(0.523)	NULL
NCOR1	9611	genome.wustl.edu	37	17	15961785	15961785	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006311.2	-1	reviewed	p.N2004H	1.000	268	0%	145	13.1%	29	13.7%	benign(0.034)	tolerated(0.2)	neutral(0.051)	NULL
NCOR1	9611	genome.wustl.edu	37	17	15974943	15974943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006311.2	-1	reviewed	p.G1311D	1.000	619	0%	339	22.4%	13	38.4%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
NCOR1	9611	genome.wustl.edu	37	17	16004602	16004602	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006311.2	-1	reviewed	p.S884	1.000	393	0%	402	23.6%	12	41.6%	-	-	-	NULL
TRPV2	51393	genome.wustl.edu	37	17	16320999	16320999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016113.3	+1	reviewed	p.S6N	0.493	67	0%	58	19%	2	0%	benign(0.005)	tolerated(0.27)	neutral(0.034)	NULL
TRPV2	51393	genome.wustl.edu	37	17	16325925	16325925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016113.3	+1	reviewed	p.G116D	1.000	112	0%	76	21.1%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
TRPV2	51393	genome.wustl.edu	37	17	16338243	16338243	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016113.3	+1	reviewed	p.L718	0.797	156	0%	140	26.4%	58	0%	-	-	-	NULL
ZNF287	57336	genome.wustl.edu	37	17	16470874	16470874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020653.2	-1	validated	p.P58S	1.000	206	0%	171	24.6%	4	75%	probably_damaging(0.98)	tolerated(0.65)	neutral(0.427)	HMMPfam_SCAN,HMMSmart_SM00431
MPRIP	23164	genome.wustl.edu	37	17	17068965	17068965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000313485	+1	known	p.P331L	0.971	27	0%	152	16.4%	2	0%	possibly_damaging(0.922)	deleterious(0.03)	deleterious(0.736)	NULL
FLCN	201163	genome.wustl.edu	37	17	17129393	17129393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000389168	-1	known	p.H165N	0.000	75	0%	62	27.4%	0	-	benign(0.004)	tolerated(0.13)	neutral(0.253)	NULL
NT5M	56953	genome.wustl.edu	37	17	17250223	17250223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020201.3	+1	reviewed	p.D217N	1.000	41	0%	30	20%	0	-	benign(0.034)	tolerated(0.57)	neutral(0.008)	HMMPfam_NT5C,superfamily_SSF56784
LRRC48	83450	genome.wustl.edu	37	17	17887221	17887221	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130090.1	+1	validated	p.I80	0.995	273	0%	180	22.2%	5	40%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00365,superfamily_Outer arm dynein light chain 1
C17orf39	79018	genome.wustl.edu	37	17	17965277	17965277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024052.4	+1	validated	p.R276K	1.000	290	0%	137	21.2%	13	38.4%	benign(0.024)	tolerated(0.88)	neutral(0.001)	HMMPfam_Vac_ImportDeg
DRG2	1819	genome.wustl.edu	37	17	18005252	18005252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001388.3	+1	reviewed	p.D249E	1.000	115	0%	107	30.8%	78	34.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO15A	51168	genome.wustl.edu	37	17	18049347	18049347	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016239.3	+1	reviewed	p.E2145	1.000	63	0%	62	29%	0	-	-	-	-	HMMPfam_MyTH4,HMMSmart_SM00139
MYO15A	51168	genome.wustl.edu	37	17	18051829	18051829	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016239.3	+1	reviewed	p.P2237	0.163	104	0%	128	25.8%	0	-	-	-	-	NULL
MYO15A	51168	genome.wustl.edu	37	17	18055205	18055205	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016239.3	+1	reviewed	p.E2611	1.000	79	0%	116	25.9%	0	-	-	-	-	NULL
ALKBH5	54890	genome.wustl.edu	37	17	18111676	18111676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017758.3	+1	validated	p.S384N	1.000	25	0%	15	26.7%	58	37.9%	probably_damaging(0.977)	deleterious(0.02)	deleterious(0.802)	NULL
FLII	2314	genome.wustl.edu	37	17	18159877	18159877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002018.2	-1	reviewed	p.T70M	1.000	124	0%	158	19%	54	33.3%	possibly_damaging(0.931)	deleterious(0.01)	deleterious(0.783)	HMMPfam_LRR_1,superfamily_SSF52047
TOP3A	7156	genome.wustl.edu	37	17	18188816	18188816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004618.3	-1	reviewed	p.A539V	1.000	112	0%	90	18.9%	14	42.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00437,HMMPfam_Topoisom_bac
SMCR8	140775	genome.wustl.edu	37	17	18226199	18226199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144775.2	+1	validated	p.E877K	0.009	222	0%	171	21.1%	7	14.2%	benign(0.011)	tolerated(0.66)	neutral(0.003)	NULL
SMCR8	140775	genome.wustl.edu	37	17	18226365	18226365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144775.2	+1	validated	p.S932I	1.000	77	0%	72	12.5%	2	50%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
ENSG00000248683	0	genome.wustl.edu	37	17	18575048	18575048	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000507743	+1	novel	NULL	0.938	37	0%	57	22.8%	3	0%	-	-	-	-
SLC5A10	125206	genome.wustl.edu	37	17	18872453	18872453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152351.3	+1	validated	p.A181V	1.000	180	0%	164	22%	23	43.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SSF
EPN2	22905	genome.wustl.edu	37	17	19186489	19186489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014964.4	+1	reviewed	p.E19D	1.000	194	0%	188	13.3%	15	20%	benign(0.002)	tolerated(0.23)	neutral(0.042)	HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273
MAPK7	5598	genome.wustl.edu	37	17	19284153	19284153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002749.3	+1	reviewed	p.P211S	0.990	120	0%	105	21%	9	11.1%	unknown(0)	deleterious(0.04)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAPK7	5598	genome.wustl.edu	37	17	19284385	19284385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002749.3	+1	reviewed	p.A288D	1.000	46	0%	64	15.6%	7	14.2%	unknown(0)	tolerated(0.09)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SLC47A2	146802	genome.wustl.edu	37	17	19611636	19611636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152908.3	-1	validated	p.S239Y	0.000	147	0.7%	149	20.8%	0	-	benign(0)	tolerated(1)	-	NULL
ALDH3A1	218	genome.wustl.edu	37	17	19646550	19646550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000691.4	-1	reviewed	p.A130V	1.000	64	0%	70	27.1%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldedh,superfamily_ALDH-like
AKAP10	11216	genome.wustl.edu	37	17	19839700	19839700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007202.2	-1	reviewed	p.V456I	0.996	322	0%	183	24%	8	37.5%	benign(0.004)	tolerated(0.19)	neutral(0.050)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
SPECC1	92521	genome.wustl.edu	37	17	20108826	20108826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033553.1	+1	validated	p.Q488H	1.000	123	0%	86	19.8%	30	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP22	23326	genome.wustl.edu	37	17	20921418	20921418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015276.1	-1	validated	p.R176H	1.000	144	0%	121	24.8%	36	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
DHRS7B	25979	genome.wustl.edu	37	17	21094390	21094390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015510.3	+1	validated	p.R301Q	1.000	466	0%	314	13.1%	148	29.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_NAD(P)-bd
MAP2K3	5606	genome.wustl.edu	37	17	21204212	21204212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145109.2	+1	reviewed	p.Q102H	1.000	165	0%	162	15.4%	82	46.3%	benign(0.416)	deleterious(0.03)	deleterious(0.499)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
WSB1	26118	genome.wustl.edu	37	17	25636063	25636063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000452005	+1	known	p.R15G	1.000	213	0%	104	25%	9	44.4%	-	-	-	NULL
LGALS9	3965	genome.wustl.edu	37	17	25974134	25974134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_009587.2	+1	reviewed	p.S250G	0.000	300	0%	220	21.4%	370	38.3%	benign(0.007)	tolerated(0.35)	neutral(0.021)	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
NOS2	4843	genome.wustl.edu	37	17	26114738	26114738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000625.4	-1	reviewed	p.E145K	0.990	381	0.5%	275	22.2%	0	-	benign(0.062)	deleterious(0.05)	neutral(0.349)	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
ENSG00000251558	0	genome.wustl.edu	37	17	26207405	26207405	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000502259	+1	known	NULL	0.007	269	0%	219	19.6%	0	-	-	-	-	-
SLC13A2	9058	genome.wustl.edu	37	17	26818769	26818769	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003984.3	+1	validated	p.N259	0.000	242	0.4%	173	23.7%	0	-	-	-	-	HMMPfam_Na_sulph_symp
FOXN1	8456	genome.wustl.edu	37	17	26861390	26861390	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003593.2	+1	reviewed	p.L323	0.001	107	0%	134	25.4%	0	-	-	-	-	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
ALDOC	230	genome.wustl.edu	37	17	26900821	26900821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005165.2	-1	reviewed	p.L311F	1.000	102	0%	70	11.4%	17	5.8%	benign(0.394)	deleterious(0.01)	deleterious(0.532)	HMMPfam_Glycolytic,superfamily_Aldolase
SPAG5	10615	genome.wustl.edu	37	17	26918737	26918737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006461.3	-1	reviewed	p.Q472H	1.000	144	0%	120	20.8%	22	63.6%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26958925	26958925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014680.2	-1	validated	p.A1337T	1.000	276	0%	140	15.7%	19	15.7%	probably_damaging(0.995)	tolerated(0.24)	deleterious(0.495)	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26961750	26961750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014680.2	-1	validated	p.R952H	1.000	200	0%	158	20.3%	9	55.5%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26961819	26961819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014680.2	-1	validated	p.R929H	1.000	268	0%	156	21.2%	14	42.8%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26965075	26965075	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014680.2	-1	validated	p.Q517P	1.000	127	0%	124	25%	9	33.3%	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
PROCA1	147011	genome.wustl.edu	37	17	27031740	27031740	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152465.1	-1	provisional	p.C71	0.976	185	0%	132	18.9%	4	0%	-	-	-	superfamily_PhospholipaseA2
PROCA1	147011	genome.wustl.edu	37	17	27031862	27031862	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152465.1	-1	provisional	e2-1	1.000	110	0%	81	28.4%	2	50%	-	-	-	-
TLCD1	116238	genome.wustl.edu	37	17	27051787	27051787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138463.3	-1	validated	p.A162V	0.986	157	0%	160	18.8%	105	45.7%	benign(0.003)	tolerated(0.62)	neutral(0.004)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC
TRAF4	9618	genome.wustl.edu	37	17	27076342	27076342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004295.3	+1	reviewed	p.T387I	1.000	134	0%	144	20.1%	184	41.3%	probably_damaging(0.986)	deleterious(0.03)	deleterious(0.799)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
C17orf63	55731	genome.wustl.edu	37	17	27086644	27086644	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077498.1	-1	validated	p.S111	1.000	190	0%	167	14.4%	7	14.2%	-	-	-	NULL
FLOT2	2319	genome.wustl.edu	37	17	27216019	27216019	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004475.2	-1	reviewed	p.K25	1.000	161	0%	118	18.6%	42	30.9%	-	-	-	HMMPfam_Band_7
MYO18A	399687	genome.wustl.edu	37	17	27424357	27424357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_078471.3	-1	validated	p.R1372W	1.000	119	0%	112	23.2%	27	51.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYO18A	399687	genome.wustl.edu	37	17	27448730	27448730	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_078471.3	-1	validated	p.P402	0.803	58	0%	47	21.3%	13	15.3%	-	-	-	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TAOK1	57551	genome.wustl.edu	37	17	27809228	27809228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020791.1	+1	validated	p.V193I	1.000	394	0%	180	23.9%	1	0%	possibly_damaging(0.862)	deleterious(0)	deleterious(0.778)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TAOK1	57551	genome.wustl.edu	37	17	27849410	27849410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020791.1	+1	validated	p.R674H	1.000	196	0%	99	18.2%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
TAOK1	57551	genome.wustl.edu	37	17	27849522	27849522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020791.1	+1	validated	p.Q711H	1.000	114	0%	68	13.2%	2	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	superfamily_Protein kinase-like (PK-like)
TP53I13	90313	genome.wustl.edu	37	17	27898638	27898638	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138349.2	+1	provisional	p.P71	1.000	442	0%	553	22.6%	153	35.9%	-	-	-	NULL
ANKRD13B	124930	genome.wustl.edu	37	17	27937736	27937736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152345.4	+1	validated	p.R286C	0.998	395	0%	358	27.1%	17	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SSH2	85464	genome.wustl.edu	37	17	27958370	27958370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033389.2	-1	reviewed	p.M1254T	1.000	230	0%	145	18.6%	5	40%	benign(0.299)	deleterious(0)	deleterious(0.537)	NULL
SSH2	85464	genome.wustl.edu	37	17	27993933	27993933	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033389.2	-1	reviewed	p.I301	1.000	331	0%	151	26.5%	2	50%	-	-	-	HMMPfam_DEK_C
BLMH	642	genome.wustl.edu	37	17	28601216	28601216	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000386.2	-1	reviewed	e7-1	1.000	203	0%	111	19.8%	0	-	-	-	-	-
CPD	1362	genome.wustl.edu	37	17	28712021	28712021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001304.3	+1	reviewed	p.G254V	1.000	326	0%	381	24.4%	1	0%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_Peptidase_M14,HMMSmart_Zn_pept,superfamily_SSF53187
CPD	1362	genome.wustl.edu	37	17	28749867	28749867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001304.3	+1	reviewed	p.P495S	1.000	340	0%	133	24.8%	7	57.1%	benign(0.039)	tolerated(0.44)	neutral(0.015)	superfamily_SSF53187
GOSR1	9527	genome.wustl.edu	37	17	28808206	28808206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004871.2	+1	reviewed	p.K26R	1.000	157	0%	169	21.3%	21	42.8%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
ADAP2	55803	genome.wustl.edu	37	17	29261309	29261309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018404.2	+1	validated	p.K168N	0.852	171	0%	72	22.2%	15	0%	possibly_damaging(0.87)	tolerated(0.13)	deleterious(0.591)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ADAP2	55803	genome.wustl.edu	37	17	29276329	29276329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018404.2	+1	validated	p.L228I	1.000	208	0%	125	20%	7	0%	benign(0.001)	tolerated(1)	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
NF1	4763	genome.wustl.edu	37	17	29533379	29533379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042492.2	+1	reviewed	p.R461Q	1.000	423	0.2%	177	27.7%	2	50%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
RAB11FIP4	84440	genome.wustl.edu	37	17	29848211	29848211	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032932.3	+1	validated	p.T197	0.025	176	0%	146	26.7%	8	50%	-	-	-	NULL
RAB11FIP4	84440	genome.wustl.edu	37	17	29848974	29848974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032932.3	+1	validated	p.S267N	0.974	248	0%	193	28.5%	15	53.3%	benign(0.006)	deleterious(0.03)	neutral(0.364)	NULL
C17orf75	64149	genome.wustl.edu	37	17	30660455	30660455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022344.2	-1	validated	p.L319P	1.000	294	0%	335	16.1%	33	27.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ZNF207	7756	genome.wustl.edu	37	17	30694843	30694843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098507.1	+1	validated	p.S325N	1.000	509	0%	262	19.8%	147	40.1%	possibly_damaging(0.539)	tolerated(0.48)	neutral(0.193)	NULL
CDK5R1	8851	genome.wustl.edu	37	17	30815060	30815060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003885.2	+1	reviewed	p.R141Q	1.000	23	0%	32	21.9%	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_CDK5_activator
ASIC2	40	genome.wustl.edu	37	17	31344629	31344629	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_183377.1	-1	reviewed	p.I505	1.000	252	0%	191	25.7%	0	-	-	-	-	HMMPfam_ASC
TMEM132E	124842	genome.wustl.edu	37	17	32961902	32961902	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207313.1	+1	provisional	p.Q501	1.000	72	0%	73	30.1%	0	-	-	-	-	NULL
RFFL	117584	genome.wustl.edu	37	17	33343427	33343427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017368.1	-1	validated	p.T283I	0.994	294	0%	92	23.9%	13	30.7%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	superfamily_SAP domain
FNDC8	54752	genome.wustl.edu	37	17	33454349	33454349	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017559.2	+1	validated	p.S166	0.991	85	0%	111	19.8%	0	-	-	-	-	NULL
SLC35G3	146861	genome.wustl.edu	37	17	33520807	33520807	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152462.2	-1	validated	p.G174*	0.936	170	0%	193	20.2%	0	-	-	-	-	HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE
SLFN5	162394	genome.wustl.edu	37	17	33592341	33592341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144975.3	+1	validated	p.P704T	0.072	399	0%	353	14.4%	14	21.4%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLFN11	91607	genome.wustl.edu	37	17	33679808	33679808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001104587.1	-1	validated	p.T758I	0.000	134	0%	119	24.4%	8	37.5%	benign(0.008)	tolerated(0.08)	neutral(0.300)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLFN11	91607	genome.wustl.edu	37	17	33690261	33690261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001104587.1	-1	validated	p.P189H	0.132	212	0%	128	25.8%	2	0%	unknown(0)	tolerated(0.13)	-	NULL
SLFN12	55106	genome.wustl.edu	37	17	33747314	33747314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018042.3	-1	validated	p.R376W	0.000	408	0%	227	18.9%	12	66.6%	benign(0.029)	deleterious(0.02)	neutral(0.385)	NULL
AP2B1	163	genome.wustl.edu	37	17	33925289	33925289	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001030006.1	+1	reviewed	p.K26	1.000	437	0%	488	24%	15	26.6%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
AP2B1	163	genome.wustl.edu	37	17	33954514	33954514	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001030006.1	+1	reviewed	p.N350T	1.000	465	0%	188	13.8%	44	27.2%	benign(0.015)	deleterious(0)	neutral(0.445)	HMMPfam_Adaptin_N,superfamily_ARM repeat
AP2B1	163	genome.wustl.edu	37	17	33963372	33963372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001030006.1	+1	reviewed	p.R390C	1.000	251	0%	118	24.6%	54	24%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Adaptin_N,superfamily_ARM repeat
MMP28	79148	genome.wustl.edu	37	17	34097111	34097111	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024302.3	-1	reviewed	p.T275M	1.000	10	0%	15	26.7%	3	33.3%	-	-	-	NULL
TAF15	8148	genome.wustl.edu	37	17	34169397	34169397	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139215.1	+1	reviewed	p.K314Q	1.000	603	0%	341	25.5%	345	43.7%	probably_damaging(0.978)	deleterious(0.05)	deleterious(0.766)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
C17orf66	256957	genome.wustl.edu	37	17	34191895	34191895	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152781.2	-1	validated	e4-1	0.981	1045	0%	474	20.5%	0	-	-	-	-	-
RDM1	201299	genome.wustl.edu	37	17	34252631	34252631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145654.3	-1	reviewed	p.G96D	0.018	410	0%	249	21.3%	12	58.3%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_dsRNA-binding domain-like
LYZL6	57151	genome.wustl.edu	37	17	34266278	34266278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020426.1	-1	provisional	p.A28V	1.000	183	0%	89	15.7%	0	-	possibly_damaging(0.691)	tolerated(0.06)	deleterious(0.570)	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955
CCL15	6359	genome.wustl.edu	37	17	34325399	34325399	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000394506	-1	known	p.P3H	0.000	261	0%	83	19.3%	3	0%	-	-	-	HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines
ACACA	31	genome.wustl.edu	37	17	35468472	35468472	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198834.1	-1	reviewed	p.R2187*	1.000	283	0%	170	23.5%	8	0%	-	-	-	HMMPfam_Carboxyl_trans,superfamily_SSF52096
C17orf78	284099	genome.wustl.edu	37	17	35734888	35734888	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173625.3	+1	validated	p.E44*	0.002	199	0%	136	14.7%	0	-	-	-	-	NULL
TADA2A	6871	genome.wustl.edu	37	17	35825625	35825625	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001488.3	+1	reviewed	p.K268T	1.000	581	0%	241	20.3%	32	50%	possibly_damaging(0.83)	tolerated(0.28)	neutral(0.347)	NULL
SYNRG	11276	genome.wustl.edu	37	17	35880752	35880752	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007247.4	-1	reviewed	e20-1	1.000	156	0%	80	21.2%	0	-	-	-	-	-
GPR179	440435	genome.wustl.edu	37	17	36484670	36484670	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004334.2	-1	validated	p.P1594	0.964	260	0.4%	234	26.9%	0	-	-	-	-	NULL
GPR179	440435	genome.wustl.edu	37	17	36489906	36489906	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004334.2	-1	validated	p.P600	0.344	268	0%	217	19.8%	0	-	-	-	-	HMMPfam_7tm_3
ARHGAP23	57636	genome.wustl.edu	37	17	36638836	36638836	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020876.1	+1	provisional	p.R848*	1.000	35	0%	56	37.5%	14	14.2%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
CISD3	284106	genome.wustl.edu	37	17	36887045	36887045	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136498.1	+1	validated	p.W27*	1.000	227	0%	338	24.9%	46	28.2%	-	-	-	NULL
PCGF2	7703	genome.wustl.edu	37	17	36896639	36896639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007144.2	-1	reviewed	p.R6Q	1.000	103	0%	112	24.1%	28	17.8%	benign(0.112)	deleterious(0.02)	neutral(0.392)	superfamily_SSF57850
PLXDC1	57125	genome.wustl.edu	37	17	37295976	37295976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020405.4	-1	validated	p.Q62H	1.000	61	0%	58	20.7%	1	0%	possibly_damaging(0.835)	deleterious(0.03)	deleterious(0.683)	NULL
CACNB1	782	genome.wustl.edu	37	17	37331848	37331848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000723.3	-1	reviewed	p.M465I	1.000	52	0%	37	21.6%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
CACNB1	782	genome.wustl.edu	37	17	37342314	37342314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199247.1	-1	reviewed	p.E224D	0.928	153	0%	101	18.8%	1	0%	benign(0.002)	tolerated(1)	-	superfamily_SH3
STAC2	342667	genome.wustl.edu	37	17	37368632	37368632	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198993.3	-1	validated	p.G383	1.000	50	0%	55	29.1%	2	50%	-	-	-	superfamily_SH3-domain,HMMPfam_SH3_2
STAC2	342667	genome.wustl.edu	37	17	37373145	37373145	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198993.3	-1	validated	p.S168	0.994	386	0%	311	13.5%	0	-	-	-	-	NULL
FBXL20	84961	genome.wustl.edu	37	17	37427059	37427059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032875.2	-1	validated	p.T293I	1.000	275	0%	172	30.8%	11	27.2%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMSmart_SM00367,superfamily_RNI-like
MED1	5469	genome.wustl.edu	37	17	37566444	37566444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004774.3	-1	reviewed	p.R677H	1.000	189	0%	155	20%	3	0%	unknown(0)	deleterious(0)	-	NULL
CDK12	51755	genome.wustl.edu	37	17	37646836	37646836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016507.2	+1	validated	p.P653H	0.992	203	0%	116	22.4%	13	30.7%	unknown(0)	deleterious(0)	-	NULL
PPP1R1B	84152	genome.wustl.edu	37	17	37786256	37786256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032192.2	+1	provisional	p.S66L	1.000	261	0%	239	25.9%	44	34%	benign(0.244)	deleterious(0.04)	neutral(0.373)	HMMPfam_DARPP-32
GSDMB	55876	genome.wustl.edu	37	17	38062411	38062411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042471.1	-1	reviewed	p.A268T	0.000	506	0.2%	217	21.2%	45	48.8%	benign(0.002)	tolerated(0.58)	neutral(0.005)	HMMPfam_Gasdermin
GSDMA	284110	genome.wustl.edu	37	17	38130578	38130578	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178171.4	+1	validated	p.T268	0.047	144	0%	112	14.3%	0	-	-	-	-	HMMPfam_Gasdermin
PSMD3	5709	genome.wustl.edu	37	17	38152574	38152574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002809.2	+1	reviewed	p.H487Y	1.000	186	0%	154	20.1%	339	36.2%	benign(0.005)	deleterious(0.05)	neutral(0.345)	HMMPfam_Rpn3_C
MED24	9862	genome.wustl.edu	37	17	38178659	38178659	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000422942	-1	known	p.R92*	0.002	137	0%	192	22.9%	122	44.2%	-	-	-	NULL
MED24	9862	genome.wustl.edu	37	17	38188335	38188335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014815.3	-1	reviewed	p.Q315H	1.000	279	0%	210	23.3%	28	35.7%	possibly_damaging(0.848)	tolerated(0.45)	neutral(0.338)	NULL
THRA	7067	genome.wustl.edu	37	17	38244584	38244584	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003250.4	+1	reviewed	p.S271	0.981	69	1.4%	74	24.3%	51	54.9%	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
NR1D1	9572	genome.wustl.edu	37	17	38250217	38250217	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021724.2	-1	provisional	p.A531	0.967	78	0%	88	14.8%	48	14.5%	-	-	-	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
NR1D1	9572	genome.wustl.edu	37	17	38251805	38251805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021724.2	-1	provisional	p.Q380H	1.000	305	0%	211	23.2%	42	33.3%	probably_damaging(0.967)	tolerated(0.56)	neutral(0.415)	superfamily_Str_ncl_receptor
NR1D1	9572	genome.wustl.edu	37	17	38252962	38252962	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021724.2	-1	provisional	p.H147	0.890	115	0%	91	23.1%	27	44.4%	-	-	-	HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_SSF57716
RAPGEFL1	51195	genome.wustl.edu	37	17	38347000	38347000	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016339.3	+1	validated	p.R235*	1.000	78	0%	108	17.6%	10	30%	-	-	-	HMMPfam_RasGEF,HMMSmart_RasGEF,superfamily_Ras_GEF
TOP2A	7153	genome.wustl.edu	37	17	38556811	38556811	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001067.2	-1	reviewed	p.I923	1.000	463	0%	183	18.6%	21	85.7%	-	-	-	HMMPfam_DNA_topoisoIV,HMMSmart_SM00434,superfamily_Type II DNA topoisomerase
TOP2A	7153	genome.wustl.edu	37	17	38564257	38564257	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001067.2	-1	reviewed	p.G488*	1.000	230	0%	171	20.5%	11	0%	-	-	-	HMMSmart_SM00433,superfamily_Type II DNA topoisomerase
LOC100287562	100287562	genome.wustl.edu	37	17	38609407	38609407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343550.1	-1	model	p.S6L	0.000	57	0%	39	28.2%	0	-	-	-	-	NULL
LOC100287562	100287562	genome.wustl.edu	37	17	38609410	38609410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343550.1	-1	model	p.A5V	0.000	53	0%	38	18.4%	0	-	-	-	-	NULL
IGFBP4	3487	genome.wustl.edu	37	17	38610179	38610179	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001552.2	+1	reviewed	e3-1	0.999	205	0%	129	10.9%	0	-	-	-	-	-
CCR7	1236	genome.wustl.edu	37	17	38711266	38711266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001838.2	-1	reviewed	p.A289T	0.974	423	0%	209	20.6%	6	0%	benign(0.001)	tolerated(0.56)	neutral(0.006)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KRT24	192666	genome.wustl.edu	37	17	38856528	38856528	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019016.2	-1	reviewed	p.Y321	0.985	165	0.6%	128	25.8%	0	-	-	-	-	superfamily_Prefoldin,HMMPfam_Filament
KRT39	390792	genome.wustl.edu	37	17	39116742	39116742	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213656.3	-1	reviewed	p.Q336	0.983	124	0%	56	10.7%	0	-	-	-	-	HMMPfam_Filament
KRT39	390792	genome.wustl.edu	37	17	39118805	39118805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213656.3	-1	reviewed	p.S240Y	0.969	331	0.3%	112	14.3%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_Filament
KRTAP4-11	653240	genome.wustl.edu	37	17	39274226	39274226	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033059.3	-1	reviewed	p.C114*	0.945	83	0%	57	17.5%	0	-	-	-	-	HMMPfam_Keratin_B2
KRT34	3885	genome.wustl.edu	37	17	39538162	39538162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021013.3	-1	reviewed	p.L155I	1.000	119	0%	185	27%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Filament
KRT31	3881	genome.wustl.edu	37	17	39553187	39553187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002277.2	-1	reviewed	p.A137S	1.000	345	0%	334	34.7%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Filament
KRT31	3881	genome.wustl.edu	37	17	39553616	39553616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002277.2	-1	reviewed	p.T59I	1.000	135	0%	145	31%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Filament
KRT38	8687	genome.wustl.edu	37	17	39595588	39595588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006771.3	-1	reviewed	p.R200H	0.991	79	0%	83	13.3%	0	-	benign(0.074)	tolerated(0.14)	neutral(0.255)	HMMPfam_Filament
KRT36	8689	genome.wustl.edu	37	17	39645672	39645672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003771.4	-1	reviewed	p.D149Y	1.000	227	0%	226	11.9%	0	-	possibly_damaging(0.826)	deleterious(0)	deleterious(0.758)	HMMPfam_Filament
KRT13	3860	genome.wustl.edu	37	17	39661658	39661658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153490.2	-1	reviewed	p.V49M	0.000	553	0%	373	23.9%	0	-	unknown(0)	tolerated(0.06)	-	NULL
KRT15	3866	genome.wustl.edu	37	17	39670904	39670904	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002275.3	-1	reviewed	p.E424*	0.895	273	0%	178	21.9%	0	-	-	-	-	NULL
KRT15	3866	genome.wustl.edu	37	17	39671835	39671835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002275.3	-1	reviewed	p.R379Q	0.963	208	0%	144	18.1%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT15	3866	genome.wustl.edu	37	17	39673144	39673144	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002275.3	-1	reviewed	p.E218	0.994	165	0%	116	17.2%	2	100%	-	-	-	superfamily_Prefoldin,HMMPfam_Filament
KRT16	3868	genome.wustl.edu	37	17	39767921	39767921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005557.3	-1	reviewed	p.A195D	1.000	129	0%	131	23.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Filament
JUP	3728	genome.wustl.edu	37	17	39915080	39915080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002230.2	-1	reviewed	p.N514D	1.000	38	0%	45	20%	325	24.9%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMSmart_ARM,superfamily_ARM-type_fold
NT5C3L	115024	genome.wustl.edu	37	17	39981853	39981853	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052935.4	-1	validated	p.D267	0.626	49	0%	62	22.6%	88	36.3%	-	-	-	HMMPfam_UMPH-1,superfamily_HAD-like
ACLY	47	genome.wustl.edu	37	17	40024153	40024153	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001096.2	-1	reviewed	p.H1072	0.996	298	0%	328	18.9%	157	38.2%	-	-	-	superfamily_Citrate_synthase_core
ACLY	47	genome.wustl.edu	37	17	40025730	40025730	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001096.2	-1	reviewed	p.S1016	0.036	613	0%	604	20%	125	49.6%	-	-	-	superfamily_Citrate_synthase_core
ACLY	47	genome.wustl.edu	37	17	40028378	40028378	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001096.2	-1	reviewed	p.H900	0.012	130	0%	119	13.4%	85	47%	-	-	-	superfamily_Citrate_synthase_core
TTC25	83538	genome.wustl.edu	37	17	40117127	40117127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000377543	+1	known	p.D549Y	0.005	207	0.5%	170	27.1%	16	37.5%	-	-	-	NULL
TTC25	83538	genome.wustl.edu	37	17	40117227	40117227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000377543	+1	known	p.A582V	0.001	279	0%	223	19.7%	13	61.5%	-	-	-	NULL
CNP	1267	genome.wustl.edu	37	17	40125501	40125501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033133.4	+1	validated	p.K275N	0.975	92	0%	90	21.1%	157	40.1%	probably_damaging(0.988)	deleterious(0.05)	deleterious(0.783)	HMMPfam_CNPase,superfamily_LigT-like
DHX58	79132	genome.wustl.edu	37	17	40255726	40255726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024119.2	-1	validated	p.V552M	0.983	43	0%	66	13.6%	20	20%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	NULL
KAT2A	2648	genome.wustl.edu	37	17	40269072	40269072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021078.2	-1	validated	p.T582N	1.000	60	0%	50	22%	97	43.2%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
GHDC	84514	genome.wustl.edu	37	17	40343051	40343051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032484.4	-1	validated	p.R356H	0.000	41	2.4%	44	18.2%	58	55.1%	benign(0.017)	tolerated(0.5)	neutral(0.011)	HMMPfam_GH3
STAT5B	6777	genome.wustl.edu	37	17	40370286	40370286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012448.3	-1	reviewed	p.T351N	1.000	206	0%	199	11.1%	31	19.3%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_P53_like_DNA_bnd,HMMPfam_STAT_bind
STAT5A	6776	genome.wustl.edu	37	17	40447750	40447750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003152.3	+1	reviewed	p.K163N	1.000	215	0%	227	26.9%	13	15.3%	benign(0.27)	tolerated(0.05)	neutral(0.374)	HMMPfam_STAT_alpha,superfamily_STAT
ATP6V0A1	535	genome.wustl.edu	37	17	40639277	40639277	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130020.1	+1	reviewed	p.H312	0.983	157	0%	57	24.6%	14	28.5%	-	-	-	HMMPfam_V_ATPase_I
HSD17B1P1	643646	genome.wustl.edu	37	17	40698788	40698788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000225928	+1	known	p.C3R	0.001	44	0%	48	22.9%	1	0%	benign(0)	tolerated(0.55)	neutral(0.007)	superfamily_NAD(P)-binding Rossmann-fold domains
HSD17B1	3292	genome.wustl.edu	37	17	40705294	40705294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000413.2	+1	validated	p.R84C	0.994	25	0%	23	30.4%	30	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
COASY	80347	genome.wustl.edu	37	17	40715230	40715230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042532.2	+1	validated	p.G226D	1.000	45	0%	72	25%	30	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CTP_transf_2,superfamily_SSF52374
COASY	80347	genome.wustl.edu	37	17	40716513	40716513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042532.2	+1	validated	p.R351K	0.000	157	0%	189	23.3%	72	45.8%	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_CTP_transf_2,superfamily_SSF52374
TUBG1	7283	genome.wustl.edu	37	17	40765733	40765733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001070.4	+1	reviewed	p.F225L	1.000	393	0%	417	21.1%	247	44.1%	benign(0.011)	tolerated(0.11)	neutral(0.272)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
TUBG1	7283	genome.wustl.edu	37	17	40766365	40766365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001070.4	+1	reviewed	p.R311C	1.000	166	0%	149	15.4%	121	38.8%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
TUBG2	27175	genome.wustl.edu	37	17	40818730	40818730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016437.2	+1	validated	p.R423M	0.972	274	0%	303	20.5%	20	45%	benign(0)	deleterious(0)	neutral(0.445)	superfamily_Tub_FtsZ_C
CNTNAP1	8506	genome.wustl.edu	37	17	40838993	40838993	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003632.2	+1	reviewed	p.E325*	1.000	46	0%	43	25.6%	3	33.3%	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
CNTNAP1	8506	genome.wustl.edu	37	17	40848084	40848084	+	Missense_Mutation	SNP	G	G	A	rs192340009	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003632.2	+1	reviewed	p.V1130M	0.996	288	0%	236	20.8%	3	66.6%	possibly_damaging(0.857)	tolerated(0.06)	deleterious(0.653)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
EZH1	2145	genome.wustl.edu	37	17	40856673	40856673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001991.3	-1	validated	p.R655H	1.000	213	0%	158	12%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
EZH1	2145	genome.wustl.edu	37	17	40861956	40861956	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001991.3	-1	validated	e11-1	1.000	463	0%	194	24.7%	0	-	-	-	-	-
WNK4	65266	genome.wustl.edu	37	17	40936463	40936463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032387.4	+1	reviewed	p.E346K	1.000	146	0%	195	27.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PSME3	10197	genome.wustl.edu	37	17	40991167	40991167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176863.1	+1	reviewed	p.A207D	1.000	327	0%	271	18.8%	64	32.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PA28_beta,superfamily_Prot_act_regA
AOC2	314	genome.wustl.edu	37	17	40997351	40997351	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_009590.2	+1	reviewed	p.P236	0.060	83	0%	67	20.9%	1	100%	-	-	-	HMMPfam_Cu_amine_oxidN3,superfamily_Amine oxidase N-terminal region
AOC3	8639	genome.wustl.edu	37	17	41004133	41004133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003734.2	+1	reviewed	p.R258H	0.000	43	0%	48	14.6%	4	50%	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_Cu_amine_oxidN3,superfamily_Cu_amine_oxidase_N-reg
DHX8	1659	genome.wustl.edu	37	17	41577398	41577398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004941.1	+1	reviewed	p.Q491H	1.000	242	0%	101	14.9%	7	42.8%	benign(0.009)	deleterious(0.03)	neutral(0.365)	NULL
DHX8	1659	genome.wustl.edu	37	17	41594595	41594595	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004941.1	+1	reviewed	p.L902	1.000	197	0%	72	16.7%	29	17.2%	-	-	-	superfamily_SSF52540
MEOX1	4222	genome.wustl.edu	37	17	41720899	41720899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004527.3	-1	reviewed	p.R200H	1.000	124	0%	145	23.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
MEOX1	4222	genome.wustl.edu	37	17	41738729	41738729	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004527.3	-1	reviewed	p.A58	0.104	113	0%	79	21.5%	2	50%	unknown(0)	-	-	NULL
DUSP3	1845	genome.wustl.edu	37	17	41847046	41847046	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004090.3	-1	reviewed	p.N163	0.939	87	0%	116	26.7%	20	25%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
MPP2	4355	genome.wustl.edu	37	17	41956755	41956755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005374.3	-1	reviewed	p.R457Q	0.999	118	0%	132	19.7%	0	-	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
MPP2	4355	genome.wustl.edu	37	17	41958119	41958119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005374.3	-1	reviewed	p.R364C	1.000	132	0%	113	17.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
MPP2	4355	genome.wustl.edu	37	17	41958677	41958677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005374.3	-1	reviewed	p.S285I	1.000	113	0%	87	27.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
MPP2	4355	genome.wustl.edu	37	17	41958876	41958876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005374.3	-1	reviewed	p.A255T	0.013	106	0.9%	77	24.7%	1	100%	benign(0.004)	tolerated(1)	-	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
NAGS	162417	genome.wustl.edu	37	17	42083122	42083122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153006.2	+1	reviewed	p.A182T	0.994	29	0%	43	20.9%	4	0%	benign(0.004)	tolerated(0.4)	neutral(0.016)	superfamily_Aa_kinase
LSM12	124801	genome.wustl.edu	37	17	42143897	42143897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152344.3	-1	validated	p.C20Y	1.000	34	0%	36	13.9%	27	59.2%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
HDAC5	10014	genome.wustl.edu	37	17	42160151	42160151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001015053.1	-1	reviewed	p.A835V	0.998	363	0%	309	18.4%	55	29%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
HDAC5	10014	genome.wustl.edu	37	17	42162432	42162432	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001015053.1	-1	reviewed	p.I715	1.000	64	0%	66	22.7%	26	38.4%	-	-	-	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
HDAC5	10014	genome.wustl.edu	37	17	42170513	42170513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001015053.1	-1	reviewed	p.K197N	1.000	190	0%	200	23%	18	50%	possibly_damaging(0.605)	deleterious(0.01)	deleterious(0.615)	NULL
HDAC5	10014	genome.wustl.edu	37	17	42171119	42171119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001015053.1	-1	reviewed	p.R61W	0.998	41	0%	27	37%	6	16.6%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
ASB16	92591	genome.wustl.edu	37	17	42248391	42248391	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080863.4	+1	reviewed	p.Q78H	0.998	58	0%	64	25%	1	0%	benign(0)	tolerated(0.19)	neutral(0.050)	superfamily_Ankyrin repeat
UBTF	7343	genome.wustl.edu	37	17	42285114	42285114	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014233.2	-1	validated	p.R660	0.983	200	0%	226	26.1%	116	44.8%	-	-	-	superfamily_HMG-box
UBTF	7343	genome.wustl.edu	37	17	42287596	42287596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014233.2	-1	validated	p.R508W	1.000	289	0%	360	27.8%	66	48.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00398,superfamily_HMG-box
SLC4A1	6521	genome.wustl.edu	37	17	42327833	42327833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000342.3	-1	reviewed	p.P910L	1.000	92	0%	92	29.3%	0	-	possibly_damaging(0.586)	deleterious(0)	deleterious(0.647)	NULL
SLC4A1	6521	genome.wustl.edu	37	17	42328543	42328543	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000342.3	-1	reviewed	p.N880I	0.000	65	0%	43	32.6%	0	-	possibly_damaging(0.708)	tolerated(0.08)	deleterious(0.555)	NULL
SLC4A1	6521	genome.wustl.edu	37	17	42340221	42340221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000342.3	-1	reviewed	p.Q5R	0.859	187	0%	165	13.9%	0	-	benign(0.076)	tolerated(0.43)	neutral(0.019)	NULL
ITGA2B	3674	genome.wustl.edu	37	17	42453285	42453285	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000419.3	-1	reviewed	p.Q839	0.650	148	0%	127	29.9%	0	-	-	-	-	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
ITGA2B	3674	genome.wustl.edu	37	17	42462341	42462341	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000419.3	-1	reviewed	p.N258	0.000	134	0%	118	17.8%	0	-	-	-	-	superfamily_Integrin alpha N-terminal domain
GPATCH8	23131	genome.wustl.edu	37	17	42475198	42475198	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002909.1	-1	validated	p.I1416S	1.000	772	0%	399	23.6%	27	40.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GPATCH8	23131	genome.wustl.edu	37	17	42475700	42475700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002909.1	-1	validated	p.D1249N	1.000	184	0%	140	24.3%	7	42.8%	probably_damaging(0.978)	tolerated(0.48)	neutral(0.431)	NULL
C17orf104	284071	genome.wustl.edu	37	17	42744123	42744123	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145080.2	+1	validated	p.E282*	1.000	106	0%	64	17.2%	0	-	-	-	-	NULL
EFTUD2	9343	genome.wustl.edu	37	17	42971842	42971842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004247.3	-1	validated	p.E16D	1.000	521	0%	295	23.4%	20	25%	benign(0.005)	tolerated(0.33)	neutral(0.024)	NULL
CCDC103	388389	genome.wustl.edu	37	17	42978398	42978398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213607.1	+1	provisional	p.A11D	0.837	162	0%	145	19.3%	9	66.6%	possibly_damaging(0.836)	tolerated(0.6)	neutral(0.324)	NULL
GFAP	2670	genome.wustl.edu	37	17	42985444	42985444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002055.3	-1	reviewed	p.M415I	1.000	388	0%	330	20%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
GFAP	2670	genome.wustl.edu	37	17	42990720	42990720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002055.3	-1	reviewed	p.A233T	0.998	92	0%	108	26.9%	0	-	benign(0.049)	tolerated(0.07)	neutral(0.322)	HMMPfam_Filament
KIF18B	146909	genome.wustl.edu	37	17	43005813	43005813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080443.1	-1	provisional	p.Q622H	0.000	59	0%	56	26.8%	6	66.6%	possibly_damaging(0.697)	deleterious(0)	deleterious(0.695)	NULL
KIF18B	146909	genome.wustl.edu	37	17	43011394	43011394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080443.1	-1	provisional	p.C320F	1.000	212	0%	131	26%	9	77.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF18B	146909	genome.wustl.edu	37	17	43011677	43011677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080443.1	-1	provisional	p.R270Q	1.000	66	0%	75	30.7%	4	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
NMT1	4836	genome.wustl.edu	37	17	43173623	43173623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021079.3	+1	provisional	p.R189Q	1.000	518	0.8%	341	22.6%	45	53.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NMT,superfamily_Acyl-CoA N-acyltransferases (Nat)
ENSG00000229966	0	genome.wustl.edu	37	17	43345195	43345195	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000438044	+1	known	NULL	0.032	72	0%	70	28.6%	2	50%	-	-	-	-
LOC100288194	100288194	genome.wustl.edu	37	17	43475324	43475324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343564.1	+1	model	p.D355Y	1.000	100	0%	146	11%	12	8.3%	-	-	-	NULL
PLEKHM1	9842	genome.wustl.edu	37	17	43528086	43528086	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014798.2	-1	reviewed	p.L847	1.000	176	0%	137	13.1%	13	30.7%	-	-	-	NULL
CRHR1	1394	genome.wustl.edu	37	17	43910844	43910844	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145146.1	+1	reviewed	p.I319	0.997	259	0%	203	23.6%	1	0%	-	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
KANSL1	284058	genome.wustl.edu	37	17	44128026	44128026	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015443.2	-1	validated	p.P631	1.000	256	0%	76	27.6%	17	35.2%	-	-	-	NULL
KANSL1	284058	genome.wustl.edu	37	17	44171962	44171962	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015443.2	-1	validated	p.Q465	1.000	171	0%	143	25.2%	5	60%	-	-	-	NULL
KANSL1	284058	genome.wustl.edu	37	17	44248830	44248830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015443.2	-1	validated	p.S227I	1.000	289	0%	151	27.2%	4	50%	possibly_damaging(0.708)	deleterious(0)	deleterious(0.700)	NULL
LRRC37A2	474170	genome.wustl.edu	37	17	44626598	44626598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001006607.2	+1	validated	p.L1365M	0.005	183	0%	108	9.3%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
WNT3	7473	genome.wustl.edu	37	17	44845901	44845901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030753.3	-1	reviewed	p.E285K	1.000	117	0%	170	23.5%	8	62.5%	benign(0.014)	tolerated(0.85)	neutral(0.001)	HMMPfam_wnt,HMMSmart_WNT1
CDC27	996	genome.wustl.edu	37	17	45229176	45229176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114091.1	-1	reviewed	p.T362A	1.000	154	0%	147	21.8%	16	43.7%	possibly_damaging(0.882)	tolerated(0.2)	neutral(0.393)	superfamily_TPR-like
CDC27	996	genome.wustl.edu	37	17	45234661	45234661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001114091.1	-1	reviewed	p.P189S	1.000	610	0%	636	10.8%	13	53.8%	benign(0)	tolerated(0.8)	neutral(0.001)	superfamily_TPR-like
ITGB3	3690	genome.wustl.edu	37	17	45367558	45367558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000212.2	+1	reviewed	p.S348N	1.000	544	0%	363	23.4%	12	50%	possibly_damaging(0.715)	tolerated(0.13)	deleterious(0.512)	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like,superfamily_Integrin domains
C17orf57	124989	genome.wustl.edu	37	17	45481980	45481980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152347.3	+1	provisional	p.Q738H	0.102	497	0%	499	13.4%	0	-	probably_damaging(0.962)	tolerated(0.09)	deleterious(0.702)	NULL
TBX21	30009	genome.wustl.edu	37	17	45822626	45822626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013351.1	+1	reviewed	p.R501H	0.996	60	0%	51	23.5%	8	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
OSBPL7	114881	genome.wustl.edu	37	17	45886793	45886793	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145798.2	-1	reviewed	p.V644	1.000	141	0.7%	109	13.8%	10	10%	-	-	-	HMMPfam_Oxysterol_BP
SP2	6668	genome.wustl.edu	37	17	45993881	45993881	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003110.5	+1	reviewed	p.V148	0.987	375	0%	240	23.3%	15	33.3%	-	-	-	NULL
SP2	6668	genome.wustl.edu	37	17	45993977	45993977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003110.5	+1	reviewed	p.K180N	1.000	348	0%	220	25%	14	35.7%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
SP2	6668	genome.wustl.edu	37	17	46000337	46000337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003110.5	+1	reviewed	p.R357C	1.000	65	0%	57	15.8%	14	28.5%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
PNPO	55163	genome.wustl.edu	37	17	46022936	46022936	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018129.3	+1	reviewed	p.P125	0.973	228	0%	158	22.8%	28	53.5%	-	-	-	superfamily_FMN_binding,HMMPfam_Pyridox_oxidase
CDK5RAP3	80279	genome.wustl.edu	37	17	46050977	46050977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176096.1	+1	reviewed	p.P49S	1.000	133	0%	84	22.6%	104	41.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF773
HOXB2	3212	genome.wustl.edu	37	17	46620631	46620631	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002145.3	-1	reviewed	p.L290	0.002	22	0%	22	27.3%	16	87.5%	-	-	-	NULL
TTLL6	284076	genome.wustl.edu	37	17	46874511	46874511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130918.1	-1	validated	p.S275F	1.000	329	0.3%	151	18.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
IGF2BP1	10642	genome.wustl.edu	37	17	47121355	47121355	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006546.3	+1	reviewed	p.Q409	1.000	128	0%	105	17.1%	7	28.5%	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
PHB	5245	genome.wustl.edu	37	17	47486517	47486517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002634.2	-1	reviewed	p.R133C	1.000	97	0%	75	29.3%	605	45.2%	benign(0.009)	deleterious(0)	neutral(0.445)	HMMPfam_Band_7,HMMSmart_SM00244
LOC100131693	100131693	genome.wustl.edu	37	17	47502186	47502186	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001726582.1	-1	model	p.H33	1.000	533	0%	409	22%	14	0%	-	-	-	HMMPfam_IF4E,superfamily_Translation initiation factor eIF4e
SPOP	8405	genome.wustl.edu	37	17	47677804	47677804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007226.1	-1	reviewed	p.R354H	1.000	148	0%	43	23.3%	52	32.6%	probably_damaging(0.997)	tolerated(0.34)	deleterious(0.489)	NULL
SLC35B1	10237	genome.wustl.edu	37	17	47780285	47780285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005827.1	-1	provisional	p.S284F	1.000	358	0%	213	28.2%	172	28.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UAA,superfamily_SSF103481
SLC35B1	10237	genome.wustl.edu	37	17	47783578	47783578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000507773	-1	known	p.T101I	1.000	119	0%	81	16%	104	38.4%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
FAM117A	81558	genome.wustl.edu	37	17	47799923	47799923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030802.3	-1	validated	p.R134C	0.896	161	0%	103	24.3%	12	25%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DLX3	1747	genome.wustl.edu	37	17	48069105	48069105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005220.2	-1	reviewed	p.A214T	0.998	381	0%	402	24.4%	0	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	NULL
ITGA3	3675	genome.wustl.edu	37	17	48145501	48145501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005501.2	+1	reviewed	p.G166S	1.000	95	0%	69	20.3%	56	32.1%	possibly_damaging(0.942)	tolerated(1)	neutral(0.387)	superfamily_Integrin alpha N-terminal domain
PDK2	5164	genome.wustl.edu	37	17	48183363	48183363	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002611.3	+1	provisional	p.Q149	1.000	71	0%	73	24.7%	23	34.7%	-	-	-	HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain
PDK2	5164	genome.wustl.edu	37	17	48184447	48184447	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002611.3	+1	provisional	p.Y205	0.998	257	0%	327	21.4%	33	18.1%	-	-	-	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
COL1A1	1277	genome.wustl.edu	37	17	48266784	48266784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000088.3	-1	reviewed	p.P928H	0.984	73	0%	56	14.3%	434	0.6%	unknown(0)	deleterious(0.03)	-	HMMPfam_Collagen
XYLT2	64132	genome.wustl.edu	37	17	48432323	48432323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022167.2	+1	reviewed	p.R305G	1.000	82	0%	95	16.8%	11	18.1%	benign(0.359)	tolerated(0.28)	neutral(0.146)	HMMPfam_Branch
XYLT2	64132	genome.wustl.edu	37	17	48435799	48435799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022167.2	+1	reviewed	p.G725W	1.000	59	0%	82	29.3%	34	38.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MRPL27	51264	genome.wustl.edu	37	17	48445544	48445544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016504.2	-1	reviewed	p.R119K	0.996	236	0%	174	20.1%	218	45.4%	benign(0)	tolerated(0.76)	neutral(0.001)	NULL
EME1	146956	genome.wustl.edu	37	17	48458231	48458231	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152463.2	+1	reviewed	p.E548D	0.256	248	0%	126	19.8%	14	0%	benign(0.23)	tolerated(0.25)	neutral(0.060)	NULL
ACSF2	80221	genome.wustl.edu	37	17	48549866	48549866	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025149.4	+1	validated	p.C467	0.994	247	0%	272	13.2%	28	14.2%	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
ACSF2	80221	genome.wustl.edu	37	17	48551348	48551348	+	Missense_Mutation	SNP	G	G	A	rs181183793	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025149.4	+1	validated	p.A571T	1.000	287	0%	272	22.1%	35	34.2%	probably_damaging(0.976)	tolerated(0.36)	neutral(0.438)	superfamily_SSF56801
MYCBPAP	84073	genome.wustl.edu	37	17	48598488	48598488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032133.4	+1	validated	p.D355Y	0.009	158	0%	129	24%	0	-	possibly_damaging(0.667)	deleterious(0.05)	deleterious(0.581)	NULL
SPATA20	64847	genome.wustl.edu	37	17	48626463	48626463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000508544	+1	known	p.L31I	0.996	77	0%	75	20%	41	34.1%	-	-	-	NULL
SPATA20	64847	genome.wustl.edu	37	17	48628207	48628207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022827.2	+1	provisional	p.P438S	0.972	33	0%	41	24.4%	51	39.2%	benign(0.001)	tolerated(0.54)	neutral(0.007)	NULL
CACNA1G	8913	genome.wustl.edu	37	17	48649272	48649272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018896.3	+1	validated	p.T207M	1.000	126	0%	140	26.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ANKRD40	91369	genome.wustl.edu	37	17	48774388	48774388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052855.3	-1	validated	p.E291D	0.455	529	0%	316	27.2%	29	51.7%	benign(0.123)	tolerated(0.46)	neutral(0.022)	NULL
NME1	4830	genome.wustl.edu	37	17	49239140	49239140	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198175.1	+1	reviewed	p.G156	0.937	365	0%	277	24.5%	452	46.4%	-	-	-	HMMPfam_NDK,HMMSmart_NDK,superfamily_NDK
NME1-NME2	654364	genome.wustl.edu	37	17	49247316	49247316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018136.1	+1	validated	p.V198M	1.000	279	0%	294	19.7%	2117	41.3%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_NDK,HMMSmart_NDK,superfamily_NDK
CA10	56934	genome.wustl.edu	37	17	49710963	49710963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001082533.1	-1	reviewed	p.L280M	1.000	206	0%	60	33.3%	0	-	possibly_damaging(0.867)	tolerated(0.09)	deleterious(0.633)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
KIF2B	84643	genome.wustl.edu	37	17	51900914	51900914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032559.4	+1	validated	p.R174C	0.760	30	0%	25	28%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIF2B	84643	genome.wustl.edu	37	17	51900915	51900915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032559.4	+1	validated	p.R174H	0.800	31	0%	26	23.1%	0	-	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	NULL
TOM1L1	10040	genome.wustl.edu	37	17	53037956	53037956	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005486.2	+1	validated	p.Q467P	0.000	284	0%	193	22.3%	36	44.4%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
HLF	3131	genome.wustl.edu	37	17	53398078	53398078	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002126.4	+1	reviewed	p.S242	0.993	65	0%	16	25%	0	-	-	-	-	HMMSmart_SM00338,HMMPfam_bZIP_2
DGKE	8526	genome.wustl.edu	37	17	54939264	54939264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003647.2	+1	reviewed	p.T466I	1.000	251	0%	224	18.3%	1	100%	benign(0.15)	tolerated(0.25)	neutral(0.050)	HMMPfam_DAGK_acc,HMMSmart_SM00045
TRIM25	7706	genome.wustl.edu	37	17	54969127	54969127	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005082.4	-1	reviewed	p.E609	0.976	101	0%	38	23.7%	22	31.8%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
SCPEP1	59342	genome.wustl.edu	37	17	55065635	55065635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021626.2	+1	validated	p.G177D	0.995	487	0.2%	345	19.4%	25	16%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
AKAP1	8165	genome.wustl.edu	37	17	55182879	55182879	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003488.3	+1	reviewed	p.A18	0.308	158	0%	116	14.7%	8	25%	-	-	-	NULL
DYNLL2	140735	genome.wustl.edu	37	17	56166572	56166572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080677.2	+1	validated	p.H68Y	1.000	379	0%	334	15%	147	19%	probably_damaging(0.98)	tolerated(0.06)	deleterious(0.746)	HMMPfam_Dynein_light,superfamily_DLC,PatternScan_DYNEIN_LIGHT_1
EPX	8288	genome.wustl.edu	37	17	56270749	56270749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000502.4	+1	reviewed	p.R63H	0.000	81	0%	73	16.4%	2	0%	benign(0.026)	tolerated(0.1)	neutral(0.287)	NULL
LPO	4025	genome.wustl.edu	37	17	56327919	56327919	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006151.2	+1	reviewed	p.S239	0.000	187	0.5%	164	22%	0	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
MPO	4353	genome.wustl.edu	37	17	56349125	56349125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000250.1	-1	reviewed	p.D641N	1.000	56	0%	44	50%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
MPO	4353	genome.wustl.edu	37	17	56356854	56356854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000340482	-1	known	p.T193I	0.000	20	0%	28	17.9%	0	-	unknown(0)	-	-	NULL
BZRAP1	9256	genome.wustl.edu	37	17	56403726	56403726	+	Silent	SNP	G	G	A	rs189750642	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004758.2	-1	validated	p.N166	0.989	217	0%	314	18.8%	0	-	-	-	-	NULL
RNF43	54894	genome.wustl.edu	37	17	56435582	56435582	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017763.4	-1	validated	p.R519*	0.000	70	0%	69	21.7%	13	53.8%	-	-	-	NULL
HSF5	124535	genome.wustl.edu	37	17	56557445	56557445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080439.1	-1	provisional	p.S245Y	1.000	453	0%	452	21.2%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
MTMR4	9110	genome.wustl.edu	37	17	56572450	56572450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004687.4	-1	validated	p.T1018M	1.000	402	0.2%	321	20.9%	11	81.8%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
MTMR4	9110	genome.wustl.edu	37	17	56572538	56572538	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004687.4	-1	validated	p.Q989*	1.000	341	0%	264	20.1%	9	11.1%	-	-	-	NULL
MTMR4	9110	genome.wustl.edu	37	17	56581672	56581672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004687.4	-1	validated	p.A493T	1.000	120	0%	117	12%	5	20%	possibly_damaging(0.515)	tolerated(0.08)	deleterious(0.473)	superfamily_(Phosphotyrosine protein) phosphatases II
TEX14	56155	genome.wustl.edu	37	17	56663179	56663179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198393.2	-1	reviewed	p.R1018M	0.010	371	0%	108	23.1%	0	-	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
TEX14	56155	genome.wustl.edu	37	17	56690782	56690782	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198393.2	-1	reviewed	p.R335	1.000	266	0%	121	22.3%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
ENSG00000227324	0	genome.wustl.edu	37	17	56738098	56738098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000453538	-1	known	p.A288V	0.354	964	0%	610	21.3%	1	0%	-	-	-	HMMPfam_TAP42
ENSG00000227324	0	genome.wustl.edu	37	17	56738218	56738218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000453538	-1	known	p.T248N	0.780	529	0%	381	25.2%	0	-	-	-	-	HMMPfam_TAP42
RAD51C	5889	genome.wustl.edu	37	17	56787350	56787350	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_058216.1	+1	reviewed	p.A279D	1.000	384	0%	133	23.3%	38	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_Rad51,superfamily_SSF52540
RAD51C	5889	genome.wustl.edu	37	17	56811522	56811522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_058216.1	+1	reviewed	p.L357S	0.002	226	0%	151	19.9%	59	32.2%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
TRIM37	4591	genome.wustl.edu	37	17	57119252	57119252	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005207.2	-1	reviewed	p.E559*	1.000	342	0%	416	21.4%	7	0%	-	-	-	NULL
SKA2	348235	genome.wustl.edu	37	17	57196746	57196746	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182620.3	-1	validated	p.R77	0.121	618	0%	465	21.5%	48	39.5%	-	-	-	NULL
PRR11	55771	genome.wustl.edu	37	17	57247132	57247132	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018304.2	+1	validated	p.R7*	0.250	258	0%	319	18.2%	4	50%	-	-	-	NULL
SMG8	55181	genome.wustl.edu	37	17	57290531	57290531	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018149.6	+1	validated	p.L783	1.000	450	0%	336	20.8%	18	72.2%	-	-	-	HMMPfam_DUF2146
SMG8	55181	genome.wustl.edu	37	17	57292335	57292335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018149.6	+1	validated	p.R983H	0.999	297	0.3%	209	21.1%	25	52%	possibly_damaging(0.902)	tolerated(0.06)	deleterious(0.679)	HMMPfam_DUF2146
DHX40	79665	genome.wustl.edu	37	17	57682880	57682880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024612.4	+1	reviewed	p.R682K	1.000	427	0%	244	23.8%	39	56.4%	benign(0.023)	deleterious(0.03)	neutral(0.365)	HMMPfam_DUF1605
CLTC	1213	genome.wustl.edu	37	17	57728563	57728563	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004859.3	+1	reviewed	e5-1	1.000	284	0%	142	21.8%	0	-	-	-	-	-
CLTC	1213	genome.wustl.edu	37	17	57741326	57741326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004859.3	+1	reviewed	p.V498I	1.000	264	0%	67	25.4%	26	46.1%	benign(0)	tolerated(0.05)	neutral(0.345)	superfamily_ARM repeat
CLTC	1213	genome.wustl.edu	37	17	57742251	57742251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004859.3	+1	reviewed	p.P542H	1.000	327	0%	104	19.2%	30	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
RPS6KB1	6198	genome.wustl.edu	37	17	57987951	57987951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003161.2	+1	reviewed	p.G57E	1.000	486	0%	372	13.2%	11	9%	benign(0.003)	tolerated(0.24)	neutral(0.037)	NULL
USP32	84669	genome.wustl.edu	37	17	58292001	58292001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032582.3	-1	validated	p.L668M	1.000	296	0%	158	15.2%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1055
APPBP2	10513	genome.wustl.edu	37	17	58577836	58577836	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006380.2	-1	reviewed	p.G51*	1.000	237	0%	122	16.4%	8	25%	-	-	-	NULL
TBX4	9496	genome.wustl.edu	37	17	59560862	59560862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018488.2	+1	reviewed	p.N541K	1.000	137	0%	146	17.1%	0	-	benign(0.133)	deleterious(0.04)	neutral(0.360)	NULL
BRIP1	83990	genome.wustl.edu	37	17	59761065	59761065	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032043.1	-1	reviewed	p.Q1114	0.027	285	0%	231	23.8%	3	0%	-	-	-	NULL
BRIP1	83990	genome.wustl.edu	37	17	59934475	59934475	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032043.1	-1	reviewed	p.F108S	0.995	721	0%	428	15.4%	4	0%	benign(0.008)	tolerated(0.28)	neutral(0.032)	HMMSmart_SM00488,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
MED13	9969	genome.wustl.edu	37	17	60038294	60038294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005121.2	-1	reviewed	p.A1805E	1.000	383	0%	228	21.5%	3	33.3%	benign(0.308)	deleterious(0)	deleterious(0.540)	HMMPfam_TRAP_240kDa
MED13	9969	genome.wustl.edu	37	17	60050099	60050099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005121.2	-1	reviewed	p.R1319Q	1.000	220	0.5%	127	23.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TRAP_240kDa
MED13	9969	genome.wustl.edu	37	17	60111261	60111261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005121.2	-1	reviewed	p.G234D	1.000	521	0%	310	19.4%	3	66.6%	possibly_damaging(0.903)	tolerated(0.13)	deleterious(0.611)	NULL
MED13	9969	genome.wustl.edu	37	17	60112894	60112894	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005121.2	-1	reviewed	p.Q182	1.000	462	0%	248	22.6%	1	0%	-	-	-	NULL
ENSG00000188755	0	genome.wustl.edu	37	17	60345071	60345071	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000339120	-1	known	p.R271	0.004	319	0%	267	18%	0	-	-	-	-	HMMPfam_TBC,HMMSmart_TBC
EFCAB3	146779	genome.wustl.edu	37	17	60484399	60484399	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144933.1	+1	validated	p.S283	0.005	469	0%	141	15.6%	0	-	-	-	-	NULL
TLK2	11011	genome.wustl.edu	37	17	60678135	60678135	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006852.3	+1	validated	p.Y558*	1.000	361	0.3%	150	14.7%	12	8.3%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MRC2	9902	genome.wustl.edu	37	17	60741989	60741989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006039.3	+1	validated	p.A67T	0.921	96	0%	91	24.2%	5	20%	benign(0.009)	tolerated(0.67)	neutral(0.003)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
MRC2	9902	genome.wustl.edu	37	17	60742200	60742200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006039.3	+1	validated	p.R137L	0.756	31	0%	34	26.5%	10	10%	benign(0.269)	tolerated(0.3)	neutral(0.057)	HMMSmart_SM00458,superfamily_Ricin B-like lectins
TANC2	26115	genome.wustl.edu	37	17	61457110	61457110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025185.3	+1	validated	p.S798P	1.000	157	1.3%	43	18.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TANC2	26115	genome.wustl.edu	37	17	61495741	61495741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025185.3	+1	validated	p.A1330V	1.000	353	0%	238	24.8%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
TANC2	26115	genome.wustl.edu	37	17	61497418	61497418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025185.3	+1	validated	p.R1359C	1.000	150	0%	81	33.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
TANC2	26115	genome.wustl.edu	37	17	61498217	61498217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025185.3	+1	validated	p.S1625N	1.000	73	0%	54	27.8%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
ACE	1636	genome.wustl.edu	37	17	61560410	61560410	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000789.2	+1	reviewed	p.L455	0.992	210	0%	241	20.7%	5	0%	-	-	-	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
ACE	1636	genome.wustl.edu	37	17	61563949	61563949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000789.2	+1	reviewed	p.T697N	0.963	229	0%	211	21.3%	7	0%	possibly_damaging(0.598)	tolerated(0.46)	neutral(0.219)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
ACE	1636	genome.wustl.edu	37	17	61563987	61563987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000789.2	+1	reviewed	p.N710D	0.932	252	0%	188	19.1%	9	11.1%	benign(0)	tolerated(0.63)	neutral(0.004)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
KCNH6	81033	genome.wustl.edu	37	17	61620977	61620977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030779.2	+1	reviewed	p.G730D	0.098	28	0%	64	26.6%	0	-	benign(0.002)	deleterious(0.03)	neutral(0.364)	NULL
KCNH6	81033	genome.wustl.edu	37	17	61623048	61623048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030779.2	+1	reviewed	p.A924T	0.125	155	0%	134	21.6%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
DCAF7	10238	genome.wustl.edu	37	17	61628117	61628117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000310827	+1	known	p.R27W	1.000	97	1%	56	30.4%	44	50%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	superfamily_WD40 repeat-like
MAP3K3	4215	genome.wustl.edu	37	17	61766242	61766242	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203351.1	+1	reviewed	e11+1	1.000	149	0%	111	16.2%	1	100%	-	-	-	-
MAP3K3	4215	genome.wustl.edu	37	17	61766927	61766927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203351.1	+1	reviewed	p.R330W	1.000	66	0%	52	30.8%	11	36.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
MAP3K3	4215	genome.wustl.edu	37	17	61767772	61767772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203351.1	+1	reviewed	p.K435N	1.000	155	0%	108	15.7%	14	28.5%	probably_damaging(0.986)	deleterious(0.05)	deleterious(0.780)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MAP3K3	4215	genome.wustl.edu	37	17	61769601	61769601	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203351.1	+1	reviewed	e16-1	1.000	113	0%	109	30.3%	0	-	-	-	-	-
FTSJ3	117246	genome.wustl.edu	37	17	61902465	61902465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017647.3	-1	reviewed	p.K218N	1.000	458	0%	390	25.9%	35	51.4%	possibly_damaging(0.947)	deleterious(0.04)	deleterious(0.740)	NULL
PSMC5	5705	genome.wustl.edu	37	17	61908717	61908717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002805.4	+1	reviewed	p.L301M	1.000	91	0%	68	30.9%	404	39.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
GH2	2689	genome.wustl.edu	37	17	61958060	61958060	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022557.2	-1	reviewed	p.C176	0.000	208	0%	186	26.9%	0	-	-	-	-	NULL
CSH1	1442	genome.wustl.edu	37	17	61972415	61972415	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001317.3	-1	reviewed	p.Q207	1.000	371	0.3%	173	23.1%	0	-	-	-	-	HMMPfam_Hormone_1,superfamily_4-helical cytokines,PatternScan_SOMATOTROPIN_2
CSH1	1442	genome.wustl.edu	37	17	61972543	61972543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022640.2	-1	reviewed	p.P249L	0.993	311	0%	174	21.3%	0	-	benign(0.001)	tolerated(0.58)	neutral(0.005)	NULL
CSH1	1442	genome.wustl.edu	37	17	61972887	61972887	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022640.2	-1	reviewed	p.S134	0.316	308	0%	156	21.2%	0	-	-	-	-	HMMPfam_Hormone_1,superfamily_4_helix_cytokine
CSHL1	1444	genome.wustl.edu	37	17	61988207	61988207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022579.1	-1	reviewed	p.V30I	0.612	139	0%	87	24.1%	0	-	benign(0.012)	tolerated(1)	neutral(0.001)	HMMPfam_Hormone_1,superfamily_4-helical cytokines
GH1	2688	genome.wustl.edu	37	17	61994783	61994783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000441409	-1	known	p.T179M	0.648	687	0%	331	20.8%	0	-	-	-	-	NULL
SCN4A	6329	genome.wustl.edu	37	17	62019203	62019203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000334.4	-1	reviewed	p.P1480H	1.000	365	0%	218	22%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN4A	6329	genome.wustl.edu	37	17	62028828	62028828	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000334.4	-1	reviewed	p.T937S	0.997	172	0%	165	18.8%	0	-	benign(0.076)	tolerated(0.82)	neutral(0.006)	HMMPfam_Na_trans_assoc
TEX2	55852	genome.wustl.edu	37	17	62291475	62291475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018469.3	-1	validated	p.A35T	1.000	337	0.3%	119	9.2%	3	0%	benign(0.001)	tolerated(0.67)	neutral(0.003)	NULL
DDX5	1655	genome.wustl.edu	37	17	62499114	62499114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004396.3	-1	validated	p.L305F	0.987	423	0%	475	24%	374	33.9%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CEP95	90799	genome.wustl.edu	37	17	62529305	62529305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138363.1	+1	provisional	p.R638I	1.000	308	0%	76	18.4%	19	36.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SMURF2	64750	genome.wustl.edu	37	17	62558898	62558898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022739.3	-1	validated	p.E401D	1.000	183	0%	117	16.2%	8	62.5%	benign(0.246)	tolerated(0.38)	neutral(0.043)	superfamily_HECT
LOC100289243	100289243	genome.wustl.edu	37	17	62747377	62747377	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343577.1	+1	model	p.Y283	1.000	259	0%	122	16.4%	6	33.3%	-	-	-	HMMPfam_Sec63,HMMSmart_SM00611
RGS9	8787	genome.wustl.edu	37	17	63193261	63193261	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003835.3	+1	reviewed	p.K293T	1.000	188	0%	69	20.3%	0	-	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	superfamily_Regulator of G-protein signaling RGS
AXIN2	8313	genome.wustl.edu	37	17	63532495	63532495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004655.3	-1	reviewed	p.A695V	1.000	57	0%	56	17.9%	4	0%	benign(0.406)	tolerated(0.12)	neutral(0.391)	NULL
CEP112	201134	genome.wustl.edu	37	17	63685297	63685297	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145036.3	-1	validated	p.R883*	0.998	513	0%	146	22.6%	3	0%	-	-	-	NULL
CEP112	201134	genome.wustl.edu	37	17	64173053	64173053	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145036.3	-1	validated	p.N64	0.866	235	0%	155	21.9%	2	0%	-	-	-	NULL
HELZ	9931	genome.wustl.edu	37	17	65103794	65103794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014877.3	-1	validated	p.D1578N	1.000	214	0%	139	20.1%	11	45.4%	unknown(0)	deleterious(0.03)	-	NULL
HELZ	9931	genome.wustl.edu	37	17	65105279	65105279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014877.3	-1	validated	p.S1481I	1.000	154	0%	121	27.3%	5	60%	unknown(0)	deleterious(0)	-	NULL
HELZ	9931	genome.wustl.edu	37	17	65141982	65141982	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014877.3	-1	validated	p.E882	1.000	173	0%	74	31.1%	2	50%	-	-	-	superfamily_SSF52540
PSMD12	5718	genome.wustl.edu	37	17	65337107	65337107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002816.3	-1	reviewed	p.R408I	1.000	334	0%	212	19.8%	72	48.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PCI,HMMSmart_PINT,superfamily_SSF46785
BPTF	2186	genome.wustl.edu	37	17	65850537	65850537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182641.3	+1	reviewed	p.Q365H	1.000	423	0%	178	29.8%	5	20%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
BPTF	2186	genome.wustl.edu	37	17	65916173	65916173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182641.3	+1	reviewed	p.R1824M	1.000	508	0%	173	26.6%	5	20%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
ENSG00000154251	0	genome.wustl.edu	37	17	66124226	66124226	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000284414	-1	known	p.I53	0.001	203	0%	150	25.3%	15	26.6%	-	-	-	NULL
SLC16A6	9120	genome.wustl.edu	37	17	66267201	66267201	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004694.4	-1	validated	p.I367S	0.316	341	0%	175	14.3%	1	0%	benign(0.001)	tolerated(0.17)	neutral(0.059)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ARSG	22901	genome.wustl.edu	37	17	66381275	66381275	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014960.3	+1	validated	p.G351	0.994	107	0%	67	23.9%	2	50%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
WIPI1	55062	genome.wustl.edu	37	17	66417926	66417926	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017983.5	-1	validated	p.T443	0.997	620	0%	326	25.2%	27	11.1%	-	-	-	NULL
ABCA8	10351	genome.wustl.edu	37	17	66865863	66865863	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007168.2	-1	reviewed	p.Q1523	0.750	236	0%	93	15.1%	0	-	-	-	-	NULL
ABCA8	10351	genome.wustl.edu	37	17	66872657	66872657	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007168.2	-1	reviewed	p.V1398	0.228	216	0%	164	22%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA8	10351	genome.wustl.edu	37	17	66878082	66878082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007168.2	-1	reviewed	p.A1250T	0.039	389	0%	272	21.7%	0	-	benign(0.004)	tolerated(0.58)	neutral(0.005)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA8	10351	genome.wustl.edu	37	17	66878855	66878855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007168.2	-1	reviewed	p.S1198Y	1.000	480	0%	417	25.2%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
ABCA8	10351	genome.wustl.edu	37	17	66899557	66899557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007168.2	-1	reviewed	p.L788F	0.014	362	0%	165	17%	0	-	benign(0.016)	tolerated(0.31)	neutral(0.028)	NULL
ABCA8	10351	genome.wustl.edu	37	17	66903923	66903923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007168.2	-1	reviewed	p.L706F	0.997	731	0%	332	19.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ABCA8	10351	genome.wustl.edu	37	17	66913552	66913552	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007168.2	-1	reviewed	p.A656	0.697	140	0%	100	19%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA9	10350	genome.wustl.edu	37	17	66987079	66987079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080283.3	-1	reviewed	p.A1246T	0.000	433	0%	238	18.1%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
ABCA9	10350	genome.wustl.edu	37	17	67014699	67014699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080283.3	-1	reviewed	p.S874R	0.001	177	0%	98	16.3%	1	0%	possibly_damaging(0.604)	tolerated(0.07)	deleterious(0.528)	NULL
ABCA9	10350	genome.wustl.edu	37	17	67029941	67029941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080283.3	-1	reviewed	p.A401D	0.051	337	0%	83	21.7%	0	-	possibly_damaging(0.927)	deleterious(0.04)	deleterious(0.724)	NULL
ABCA10	10349	genome.wustl.edu	37	17	67149637	67149637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080282.3	-1	reviewed	p.T1339I	0.036	166	0%	87	13.8%	0	-	benign(0.119)	tolerated(0.05)	neutral(0.355)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA5	23461	genome.wustl.edu	37	17	67251756	67251756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018672.3	-1	reviewed	p.L1332F	1.000	106	0%	40	22.5%	3	33.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC39A11	201266	genome.wustl.edu	37	17	70645395	70645395	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139177.3	-1	validated	p.I228	1.000	116	0%	108	23.1%	12	33.3%	-	-	-	HMMPfam_Zip
SSTR2	6752	genome.wustl.edu	37	17	71165609	71165609	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001050.2	+1	reviewed	p.F51V	1.000	370	0%	333	21.3%	1	0%	probably_damaging(0.998)	tolerated(0.54)	deleterious(0.482)	superfamily_Family A G protein-coupled receptor-like
SDK2	54549	genome.wustl.edu	37	17	71344833	71344833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144952.1	-1	provisional	p.H2024N	0.999	126	0%	111	18%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
SDK2	54549	genome.wustl.edu	37	17	71346842	71346842	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144952.1	-1	provisional	p.F1949S	1.000	285	0%	160	19.4%	0	-	probably_damaging(0.997)	tolerated(0.42)	deleterious(0.480)	NULL
SDK2	54549	genome.wustl.edu	37	17	71357849	71357849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144952.1	-1	provisional	p.A1814V	1.000	119	0%	125	15.2%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
GPR142	350383	genome.wustl.edu	37	17	72368462	72368462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181790.1	+1	provisional	p.A371V	1.000	100	0%	74	27%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_7tm_1,superfamily_SSF81321
GPRC5C	55890	genome.wustl.edu	37	17	72436911	72436911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022036.2	+1	reviewed	p.K377N	0.998	189	0%	212	16.5%	229	42.7%	benign(0.012)	tolerated(0.55)	neutral(0.007)	NULL
CD300C	10871	genome.wustl.edu	37	17	72539033	72539033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006678.3	-1	provisional	p.R165I	0.000	122	0%	73	19.2%	7	0%	benign(0.428)	tolerated(0.16)	neutral(0.199)	NULL
CD300LD	100131439	genome.wustl.edu	37	17	72576160	72576160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001115152.1	-1	provisional	p.R189I	0.166	189	0%	110	15.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CD300LF	146722	genome.wustl.edu	37	17	72694589	72694589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139018.3	-1	validated	p.P160T	0.419	174	0.6%	93	18.3%	5	0%	unknown(0)	deleterious(0.01)	-	NULL
GRIN2C	2905	genome.wustl.edu	37	17	72840467	72840467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000835.3	-1	reviewed	p.R844H	1.000	98	0%	118	22%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GRIN2C	2905	genome.wustl.edu	37	17	72840565	72840565	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000835.3	-1	reviewed	p.D811	1.000	201	0%	275	20.4%	0	-	-	-	-	HMMPfam_Lig_chan
USH1G	124590	genome.wustl.edu	37	17	72915758	72915758	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173477.2	-1	reviewed	p.P391	0.259	14	0%	23	21.7%	0	-	-	-	-	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology
USH1G	124590	genome.wustl.edu	37	17	72916249	72916249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173477.2	-1	reviewed	p.E228K	1.000	26	0%	17	29.4%	0	-	benign(0.15)	tolerated(0.14)	neutral(0.263)	NULL
C17orf28	283987	genome.wustl.edu	37	17	72952039	72952039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030630.2	-1	validated	p.L495P	1.000	216	0%	204	16.2%	45	35.5%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Hid1
C17orf28	283987	genome.wustl.edu	37	17	72956240	72956240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030630.2	-1	validated	p.E278K	1.000	122	0%	110	20%	28	46.4%	possibly_damaging(0.713)	tolerated(0.08)	deleterious(0.557)	HMMPfam_Hid1
C17orf28	283987	genome.wustl.edu	37	17	72958355	72958355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030630.2	-1	validated	p.Q195H	0.998	64	0%	73	28.8%	30	33.3%	possibly_damaging(0.568)	deleterious(0.01)	deleterious(0.600)	HMMPfam_Hid1
C17orf28	283987	genome.wustl.edu	37	17	72958369	72958369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030630.2	-1	validated	p.A191T	1.000	44	0%	60	20%	33	63.6%	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	HMMPfam_Hid1
CDR2L	30850	genome.wustl.edu	37	17	72995618	72995618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014603.2	+1	validated	p.E33D	1.000	280	0%	259	24.3%	29	44.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CDR2L	30850	genome.wustl.edu	37	17	72997485	72997485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014603.2	+1	validated	p.A81V	1.000	50	0%	60	26.7%	56	42.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SLC16A5	9121	genome.wustl.edu	37	17	73100203	73100203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004695.2	+1	provisional	p.A431V	0.000	144	0%	120	23.3%	65	38.4%	benign(0.01)	tolerated(0.25)	neutral(0.037)	NULL
HN1	51155	genome.wustl.edu	37	17	73132262	73132262	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002032.1	-1	validated	p.W127*	0.997	34	0%	30	36.7%	364	40.3%	-	-	-	NULL
NUP85	79902	genome.wustl.edu	37	17	73231291	73231291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024844.3	+1	reviewed	p.L622F	0.002	419	0%	243	18.9%	95	40%	benign(0)	tolerated(0.93)	-	NULL
GGA3	23163	genome.wustl.edu	37	17	73238450	73238450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138619.2	-1	reviewed	p.E238D	1.000	348	0.3%	261	26.1%	17	64.7%	benign(0.005)	tolerated(0.58)	neutral(0.005)	HMMPfam_GAT,superfamily_GAT-like domain
GGA3	23163	genome.wustl.edu	37	17	73238920	73238920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138619.2	-1	reviewed	p.V201M	1.000	155	0%	146	17.1%	7	14.2%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	superfamily_GAT-like domain
GGA3	23163	genome.wustl.edu	37	17	73240784	73240784	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138619.2	-1	reviewed	p.C72	0.912	253	0%	171	19.3%	9	22.2%	-	-	-	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288
KIAA0195	9772	genome.wustl.edu	37	17	73481579	73481579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014738.4	+1	validated	p.A32V	0.998	144	0.7%	76	23.7%	7	28.5%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
KIAA0195	9772	genome.wustl.edu	37	17	73484182	73484182	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014738.4	+1	validated	p.G193	1.000	232	0%	187	24.1%	20	55%	-	-	-	NULL
RECQL5	9400	genome.wustl.edu	37	17	73626324	73626324	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004259.5	-1	validated	p.E584	0.868	136	0%	159	10.1%	9	22.2%	-	-	-	NULL
RECQL5	9400	genome.wustl.edu	37	17	73626893	73626893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004259.5	-1	validated	p.A537V	0.998	52	0%	89	18%	10	40%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
RECQL5	9400	genome.wustl.edu	37	17	73657054	73657054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004259.5	-1	validated	p.V323M	1.000	285	0%	150	22.7%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
ITGB4	3691	genome.wustl.edu	37	17	73726522	73726522	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000213.3	+1	reviewed	p.L313	1.000	56	0%	63	17.5%	107	55.1%	-	-	-	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like
ITGB4	3691	genome.wustl.edu	37	17	73751882	73751882	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000213.3	+1	reviewed	p.C1553	0.855	19	0%	30	40%	298	48.3%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ITGB4	3691	genome.wustl.edu	37	17	73752900	73752900	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000213.3	+1	reviewed	p.I1671	1.000	87	0%	95	27.4%	319	44.2%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
UNK	85451	genome.wustl.edu	37	17	73808286	73808286	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080419.1	+1	provisional	p.S212	0.475	167	0%	179	26.8%	14	50%	-	-	-	HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger
TRIM65	201292	genome.wustl.edu	37	17	73888505	73888505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173547.2	-1	validated	p.T196M	0.000	96	0%	108	10.2%	19	5.2%	benign(0.16)	tolerated(0.07)	neutral(0.334)	NULL
FBF1	85302	genome.wustl.edu	37	17	73918086	73918086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080542.1	-1	provisional	p.A474D	0.011	160	0%	144	11.8%	10	20%	possibly_damaging(0.889)	deleterious(0)	deleterious(0.794)	NULL
FBF1	85302	genome.wustl.edu	37	17	73919315	73919315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080542.1	-1	provisional	p.S444Y	0.000	43	0%	49	12.2%	6	16.6%	possibly_damaging(0.46)	deleterious(0.04)	deleterious(0.500)	NULL
ACOX1	51	genome.wustl.edu	37	17	73945430	73945430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004035.6	-1	reviewed	p.H532Q	1.000	343	0%	226	23%	17	58.8%	possibly_damaging(0.644)	tolerated(0.34)	neutral(0.248)	HMMPfam_ACOX,superfamily_AcylCoADH_C_like
ACOX1	51	genome.wustl.edu	37	17	73975104	73975104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004035.6	-1	reviewed	p.E17D	1.000	44	0%	60	35%	7	42.8%	benign(0.003)	tolerated(0.15)	neutral(0.241)	superfamily_AcylCoA_dehyd_NM
EVPL	2125	genome.wustl.edu	37	17	74005673	74005673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001988.2	-1	validated	p.E1205K	0.995	61	0%	75	18.7%	30	53.3%	probably_damaging(0.996)	tolerated(0.47)	deleterious(0.473)	HMMSmart_SM00250
SRP68	6730	genome.wustl.edu	37	17	74066489	74066489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014230.2	-1	reviewed	p.G74D	1.000	386	0%	450	22.4%	35	51.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EXOC7	23265	genome.wustl.edu	37	17	74080609	74080609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145297.2	-1	validated	p.P640S	0.998	367	0%	395	25.6%	60	38.3%	benign(0.293)	tolerated(0.48)	neutral(0.101)	HMMPfam_Exo70
RNF157	114804	genome.wustl.edu	37	17	74151703	74151703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052916.2	-1	validated	p.E546D	0.970	71	0%	50	18%	1	0%	probably_damaging(0.994)	tolerated(0.19)	deleterious(0.502)	NULL
QRICH2	84074	genome.wustl.edu	37	17	74275484	74275484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032134.1	-1	provisional	p.L1426I	0.999	122	0.8%	109	20.2%	6	50%	benign(0.243)	tolerated(0.68)	neutral(0.027)	NULL
QRICH2	84074	genome.wustl.edu	37	17	74287325	74287325	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032134.1	-1	provisional	p.V995	0.004	107	0%	92	15.2%	0	-	-	-	-	NULL
QRICH2	84074	genome.wustl.edu	37	17	74287512	74287512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032134.1	-1	provisional	p.A933V	0.008	90	0%	68	33.8%	1	100%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
UBE2O	63893	genome.wustl.edu	37	17	74388045	74388045	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022066.3	-1	validated	p.N1032	1.000	168	0%	153	22.2%	19	26.3%	-	-	-	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
UBE2O	63893	genome.wustl.edu	37	17	74394341	74394341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022066.3	-1	validated	p.D674N	0.906	195	0%	153	19.6%	17	17.6%	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
CYGB	114757	genome.wustl.edu	37	17	74527187	74527187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134268.3	-1	validated	p.E138G	0.999	38	0%	49	24.5%	6	0%	benign(0.121)	tolerated(0.17)	neutral(0.068)	superfamily_Globin-like
ST6GALNAC1	55808	genome.wustl.edu	37	17	74621457	74621457	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018414.3	-1	validated	p.R586	0.982	105	0%	103	16.5%	38	36.8%	-	-	-	HMMPfam_Glyco_transf_29
SEC14L1	6397	genome.wustl.edu	37	17	75192345	75192345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039573.2	+1	reviewed	p.S257R	1.000	179	0%	108	22.2%	28	28.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CRAL_TRIO_N,superfamily_CRAL/TRIO N-terminal domain
SEC14L1	6397	genome.wustl.edu	37	17	75208058	75208058	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039573.2	+1	reviewed	p.S546	0.837	203	0%	163	13.5%	59	22%	-	-	-	superfamily_Supernatant protein factor (SPF) C-terminal domain
SEC14L1	6397	genome.wustl.edu	37	17	75209491	75209491	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039573.2	+1	reviewed	p.D653	1.000	55	0%	58	15.5%	83	13.2%	-	-	-	superfamily_Supernatant protein factor (SPF) C-terminal domain
TNRC6C	57690	genome.wustl.edu	37	17	76046060	76046060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142640.1	+1	validated	p.P306H	1.000	130	0.8%	111	26.1%	2	50%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
TMC6	11322	genome.wustl.edu	37	17	76120198	76120198	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127198.1	-1	reviewed	p.P318	0.150	55	0%	68	27.9%	54	35.1%	-	-	-	NULL
TMC6	11322	genome.wustl.edu	37	17	76122650	76122650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127198.1	-1	reviewed	p.A46T	0.003	87	0%	158	27.2%	22	31.8%	unknown(0)	tolerated(0.06)	-	NULL
SYNGR2	9144	genome.wustl.edu	37	17	76167045	76167045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004710.3	+1	reviewed	p.A83T	0.977	158	0%	184	26.1%	421	41.3%	benign(0.024)	tolerated(0.09)	neutral(0.297)	HMMPfam_MARVEL
TK1	7083	genome.wustl.edu	37	17	76170993	76170993	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003258.4	-1	validated	p.V184	1.000	91	0%	102	11.8%	93	32.2%	-	-	-	HMMPfam_TK,PatternScan_TK_CELLULAR_TYPE
BIRC5	332	genome.wustl.edu	37	17	76210869	76210869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012271.1	+1	reviewed	p.I74V	0.890	47	0%	55	12.7%	39	12.8%	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_BIR,HMMSmart_BIR,superfamily_SSF57924
DNAH17	8632	genome.wustl.edu	37	17	76440827	76440827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000389840	-1	known	p.S3782Y	0.973	172	0%	197	21.8%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_Dynein_heavy
DNAH17	8632	genome.wustl.edu	37	17	76449424	76449424	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000389840	-1	known	e64+1	1.000	189	0%	149	22.1%	0	-	-	-	-	-
DNAH17	8632	genome.wustl.edu	37	17	76471850	76471850	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000389840	-1	known	p.G2726	0.001	333	0%	283	27.2%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH17	8632	genome.wustl.edu	37	17	76481745	76481745	+	Missense_Mutation	SNP	G	G	A	rs139963298	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000389840	-1	known	p.A2443V	1.000	156	0%	181	24.9%	0	-	benign(0.093)	deleterious(0)	neutral(0.452)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH17	8632	genome.wustl.edu	37	17	76528794	76528794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000389840	-1	known	p.L962I	0.934	136	0%	116	12.1%	0	-	benign(0.011)	tolerated(0.81)	neutral(0.001)	NULL
DNAH17	8632	genome.wustl.edu	37	17	76556927	76556927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000389840	-1	known	p.Q642H	0.993	69	0%	54	24.1%	1	0%	benign(0.001)	tolerated(0.09)	neutral(0.296)	HMMPfam_DHC_N1
CYTH1	9267	genome.wustl.edu	37	17	76705780	76705780	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004762.2	-1	reviewed	p.E19	0.968	366	0%	245	24.1%	14	14.2%	-	-	-	NULL
USP36	57602	genome.wustl.edu	37	17	76794559	76794559	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025090.3	-1	validated	p.R1105	0.975	462	0%	500	23%	31	48.3%	-	-	-	NULL
USP36	57602	genome.wustl.edu	37	17	76809894	76809894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025090.3	-1	validated	p.V409A	1.000	264	0%	217	20.3%	14	35.7%	unknown(0)	tolerated(0.06)	-	HMMPfam_UCH,superfamily_SSF54001
CANT1	124583	genome.wustl.edu	37	17	76993333	76993333	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138793.3	-1	reviewed	p.T124	0.994	92	0%	110	27.3%	9	22.2%	-	-	-	HMMPfam_Apyrase,superfamily_Apyrase
CANT1	124583	genome.wustl.edu	37	17	76993522	76993522	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138793.3	-1	reviewed	p.S61	0.015	18	0%	13	30.8%	7	14.2%	-	-	-	NULL
CANT1	124583	genome.wustl.edu	37	17	76993619	76993619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138793.3	-1	reviewed	p.A29V	1.000	33	0%	45	31.1%	14	35.7%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
RBFOX3	146713	genome.wustl.edu	37	17	77092762	77092762	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001082575.1	-1	validated	p.Q256	1.000	266	0%	277	20.6%	2	0%	-	-	-	NULL
CBX2	84733	genome.wustl.edu	37	17	77755582	77755582	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005189.2	+1	reviewed	p.S90	0.997	72	0%	85	24.7%	0	-	-	-	-	NULL
CBX2	84733	genome.wustl.edu	37	17	77757578	77757578	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005189.2	+1	reviewed	p.S112	0.988	192	0%	179	15.6%	1	0%	-	-	-	NULL
CBX2	84733	genome.wustl.edu	37	17	77758299	77758299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005189.2	+1	reviewed	p.L353I	1.000	19	0%	15	33.3%	2	50%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
CCDC40	55036	genome.wustl.edu	37	17	78022464	78022464	+	Silent	SNP	C	C	T	rs183808038	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017950.2	+1	validated	p.T253	0.000	325	0%	248	19.8%	3	33.3%	-	-	-	NULL
SGSH	6448	genome.wustl.edu	37	17	78184615	78184615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000199.3	-1	reviewed	p.R382Q	0.000	327	0%	225	11.1%	31	16.1%	benign(0.002)	tolerated(0.51)	neutral(0.009)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
RNF213	57674	genome.wustl.edu	37	17	78265610	78265610	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020954.2	+1	validated	p.S485	0.000	143	0%	122	9.8%	3	0%	-	-	-	NULL
RNF213	57674	genome.wustl.edu	37	17	78302195	78302195	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000508628	+1	known	p.E1145	0.000	510	0%	266	21.1%	4	50%	-	-	-	NULL
RNF213	57674	genome.wustl.edu	37	17	78305881	78305881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000508628	+1	known	p.R1198I	0.000	113	0%	88	27.3%	7	28.5%	benign(0.129)	tolerated(0.08)	neutral(0.311)	NULL
RNF213	57674	genome.wustl.edu	37	17	78350686	78350686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000508628	+1	known	p.A4478V	0.295	313	0%	227	26.9%	64	42.1%	possibly_damaging(0.527)	deleterious(0.01)	deleterious(0.584)	NULL
ENDOV	284131	genome.wustl.edu	37	17	78395685	78395685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173627.3	+1	validated	p.L96M	1.000	139	0%	152	15.8%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Endonuclease_5
RPTOR	57521	genome.wustl.edu	37	17	78727927	78727927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020761.2	+1	reviewed	p.L258I	1.000	172	0%	130	27.7%	5	40%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	NULL
RPTOR	57521	genome.wustl.edu	37	17	78914381	78914381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020761.2	+1	reviewed	p.A1002V	0.971	77	0%	60	30%	12	41.6%	possibly_damaging(0.454)	tolerated(0.14)	neutral(0.398)	superfamily_WD40 repeat-like
AATK	9625	genome.wustl.edu	37	17	79094935	79094935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080395.2	-1	reviewed	p.A934V	0.624	24	0%	23	30.4%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
LOC388428	388428	genome.wustl.edu	37	17	79154982	79154982	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_027255.1	+1	validated	NULL	0.000	65	0%	90	23.3%	0	-	-	-	-	-
AZI1	22994	genome.wustl.edu	37	17	79172765	79172765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014984.2	-1	validated	p.G400D	0.000	50	0%	59	33.9%	15	26.6%	benign(0.318)	tolerated(0.8)	neutral(0.100)	NULL
BAHCC1	57597	genome.wustl.edu	37	17	79414846	79414846	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080519.2	+1	inferred	p.A1261T	0.995	21	0%	26	23.1%	0	-	-	-	-	NULL
CCDC137	339230	genome.wustl.edu	37	17	79639146	79639146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199287.2	+1	validated	p.E207D	0.994	85	0%	89	27%	36	44.4%	probably_damaging(0.979)	tolerated(0.26)	neutral(0.456)	NULL
ARL16	339231	genome.wustl.edu	37	17	79650071	79650071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040025.1	-1	validated	p.S93N	1.000	151	0%	222	19.8%	43	39.5%	benign(0.137)	tolerated(1)	neutral(0.011)	HMMPfam_Arf,superfamily_SSF52540
HGS	9146	genome.wustl.edu	37	17	79653396	79653396	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004712.3	+1	provisional	p.H59	0.849	332	0%	379	22.7%	53	45.2%	-	-	-	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288
HGS	9146	genome.wustl.edu	37	17	79658493	79658493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004712.3	+1	provisional	p.C185Y	0.998	100	0%	118	26.3%	45	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger
P4HB	5034	genome.wustl.edu	37	17	79803079	79803079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000918.3	-1	reviewed	p.L463M	0.995	229	0%	240	21.7%	735	38.6%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
ALYREF	10189	genome.wustl.edu	37	17	79846412	79846412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005782.3	-1	reviewed	p.R189W	1.000	138	0%	156	16.7%	334	23.3%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_SSF54928
PCYT2	5833	genome.wustl.edu	37	17	79862805	79862805	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002861.3	-1	reviewed	p.A358	0.000	85	0%	133	18%	97	39.1%	-	-	-	superfamily_Nucleotidylyl transferase
SIRT7	51547	genome.wustl.edu	37	17	79870317	79870317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016538.1	-1	reviewed	p.R393H	1.000	203	0%	213	25.8%	26	42.3%	possibly_damaging(0.923)	tolerated(0.15)	deleterious(0.613)	NULL
SIRT7	51547	genome.wustl.edu	37	17	79870464	79870464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016538.1	-1	reviewed	p.A344V	0.998	79	1.3%	90	28.9%	38	31.5%	benign(0.418)	deleterious(0.01)	deleterious(0.541)	superfamily_DHS-like NAD/FAD-binding domain
PYCR1	5831	genome.wustl.edu	37	17	79893236	79893236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006907.2	-1	reviewed	p.V99I	0.997	63	0%	90	27.8%	99	48.4%	benign(0.012)	tolerated(0.43)	neutral(0.014)	HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains
NOTUM	147111	genome.wustl.edu	37	17	79916864	79916864	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178493.5	-1	validated	p.G160	0.681	120	0%	163	22.1%	1	0%	-	-	-	HMMPfam_PAE
LRRC45	201255	genome.wustl.edu	37	17	79987953	79987953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144999.2	+1	provisional	p.A503S	0.612	12	0%	14	28.6%	62	37%	benign(0.282)	tolerated(0.39)	neutral(0.102)	NULL
DCXR	51181	genome.wustl.edu	37	17	79994125	79994125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016286.2	-1	validated	p.W191C	0.941	90	0%	118	21.2%	239	30.1%	possibly_damaging(0.914)	deleterious(0)	deleterious(0.810)	superfamily_NAD(P)-bd
GPS1	2873	genome.wustl.edu	37	17	80011917	80011917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_212492.1	+1	reviewed	p.E140D	0.994	47	0%	75	28%	116	38.7%	benign(0.021)	tolerated(0.52)	neutral(0.010)	NULL
FASN	2194	genome.wustl.edu	37	17	80038255	80038255	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004104.4	-1	reviewed	p.A2346	0.994	41	0%	46	13%	91	4.3%	-	-	-	HMMPfam_Thioesterase,superfamily_alpha/beta-Hydrolases
FASN	2194	genome.wustl.edu	37	17	80042425	80042425	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004104.4	-1	reviewed	p.L1578	1.000	61	0%	52	17.3%	45	77.7%	-	-	-	superfamily_GroES-like
FASN	2194	genome.wustl.edu	37	17	80044956	80044956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004104.4	-1	reviewed	p.A1133T	0.019	39	0%	49	20.4%	21	19%	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
FASN	2194	genome.wustl.edu	37	17	80045871	80045871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004104.4	-1	reviewed	p.R942H	0.004	31	0%	35	22.9%	22	59%	benign(0.002)	tolerated(0.25)	neutral(0.037)	NULL
FASN	2194	genome.wustl.edu	37	17	80046680	80046680	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004104.4	-1	reviewed	p.L793	1.000	33	0%	24	33.3%	25	28%	-	-	-	HMMPfam_Acyl_transf_1,superfamily_FabD/lysophospholipase-like
FASN	2194	genome.wustl.edu	37	17	80047243	80047243	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004104.4	-1	reviewed	p.F661	0.826	81	0%	78	17.9%	24	66.6%	-	-	-	HMMPfam_Acyl_transf_1,superfamily_FabD/lysophospholipase-like,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase
CSNK1D	1453	genome.wustl.edu	37	17	80206676	80206676	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000269361	-1	known	p.L316	0.000	48	0%	65	26.2%	0	-	-	-	-	NULL
HEXDC	284004	genome.wustl.edu	37	17	80394599	80394599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173620.2	+1	validated	p.D230Y	1.000	135	0.7%	140	17.1%	32	3.1%	benign(0.072)	tolerated(0.1)	neutral(0.291)	HMMPfam_Glyco_hydro_20,superfamily_Glyco_hydro_cat
FN3KRP	79672	genome.wustl.edu	37	17	80684448	80684448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024619.3	+1	validated	p.R187S	1.000	240	0%	216	10.6%	44	22.7%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_Kinase_like
ZNF750	79755	genome.wustl.edu	37	17	80788617	80788617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024702.2	-1	reviewed	p.A525T	0.000	46	0%	57	21.1%	1	0%	possibly_damaging(0.887)	tolerated(0.16)	neutral(0.406)	NULL
ZNF750	79755	genome.wustl.edu	37	17	80789168	80789168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024702.2	-1	reviewed	p.S388F	0.449	155	0%	163	20.9%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ZNF750	79755	genome.wustl.edu	37	17	80789956	80789956	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024702.2	-1	reviewed	p.C125	0.001	76	0%	82	20.7%	0	-	-	-	-	NULL
TBCD	6904	genome.wustl.edu	37	17	80878488	80878488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005993.4	+1	reviewed	p.V699I	0.000	439	0%	589	22.2%	61	32.7%	benign(0.002)	tolerated(0.44)	neutral(0.013)	superfamily_ARM repeat
COLEC12	81035	genome.wustl.edu	37	18	346919	346919	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130386.2	-1	validated	p.Q235*	1.000	243	0%	139	21.6%	5	0%	-	-	-	NULL
CLUL1	27098	genome.wustl.edu	37	18	633431	633431	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014410.4	+1	validated	p.S330	0.280	210	0%	107	16.8%	1	0%	-	-	-	HMMPfam_Clusterin,HMMSmart_CLa
ENOSF1	55556	genome.wustl.edu	37	18	685921	685921	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_202758.2	-1	validated	p.L268	1.000	380	0%	227	23.3%	21	4.7%	-	-	-	HMMPfam_MR_MLE,PatternScan_MR_MLE_2,superfamily_SSF51604
METTL4	64863	genome.wustl.edu	37	18	2544266	2544266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022840.3	-1	validated	p.L401F	0.235	184	0%	136	19.9%	2	100%	benign(0.123)	tolerated(0.33)	neutral(0.034)	HMMPfam_MT-A70
METTL4	64863	genome.wustl.edu	37	18	2544708	2544708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022840.3	-1	validated	p.K375N	0.996	464	0%	384	10.2%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_MT-A70
NDC80	10403	genome.wustl.edu	37	18	2587897	2587897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006101.2	+1	validated	p.M246I	0.920	364	0%	162	21%	18	44.4%	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
SMCHD1	23347	genome.wustl.edu	37	18	2674094	2674094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015295.2	+1	validated	p.N196K	1.000	367	0%	268	26.1%	5	20%	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
SMCHD1	23347	genome.wustl.edu	37	18	2796483	2796483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015295.2	+1	validated	p.P1986H	1.000	193	0%	105	29.5%	29	34.4%	benign(0.293)	deleterious(0.01)	deleterious(0.496)	NULL
EMILIN2	84034	genome.wustl.edu	37	18	2891091	2891091	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032048.2	+1	validated	p.I322	0.000	104	0%	91	25.3%	5	0%	-	-	-	NULL
EMILIN2	84034	genome.wustl.edu	37	18	2891275	2891275	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032048.2	+1	validated	p.R384*	0.228	96	0%	79	27.8%	3	0%	-	-	-	NULL
EMILIN2	84034	genome.wustl.edu	37	18	2891432	2891432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032048.2	+1	validated	p.R436H	0.007	177	0%	117	29.9%	4	0%	possibly_damaging(0.648)	tolerated(0.39)	neutral(0.243)	NULL
MYOM1	8736	genome.wustl.edu	37	18	3116479	3116479	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003803.3	-1	reviewed	p.R1051	1.000	80	0%	43	18.6%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MYOM1	8736	genome.wustl.edu	37	18	3134677	3134677	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003803.3	-1	reviewed	p.P785	0.901	172	0%	77	27.3%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MYOM1	8736	genome.wustl.edu	37	18	3215217	3215217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003803.3	-1	reviewed	p.S2Y	1.000	141	0%	139	20.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DLGAP1	9229	genome.wustl.edu	37	18	3567517	3567517	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004746.2	-1	provisional	p.S676	0.988	635	0%	340	19.4%	6	50%	-	-	-	HMMPfam_GKAP
ZFP161	7541	genome.wustl.edu	37	18	5291337	5291337	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143823.1	-1	validated	p.G290	0.977	331	0.6%	302	11.9%	7	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
EPB41L3	23136	genome.wustl.edu	37	18	5395147	5395147	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012307.2	-1	provisional	e20-1	1.000	260	0%	165	23%	0	-	-	-	-	-
EPB41L3	23136	genome.wustl.edu	37	18	5395676	5395676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012307.2	-1	provisional	p.V1002M	0.990	387	0%	215	17.2%	12	0%	possibly_damaging(0.912)	tolerated(0.06)	deleterious(0.686)	HMMPfam_4_1_CTD
EPB41L3	23136	genome.wustl.edu	37	18	5434052	5434052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012307.2	-1	provisional	p.L225P	0.993	268	0%	144	18.8%	3	0%	probably_damaging(0.995)	tolerated(0.2)	deleterious(0.507)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
L3MBTL4	91133	genome.wustl.edu	37	18	6311575	6311575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173464.3	-1	validated	p.R17H	0.002	228	0%	85	16.5%	3	33.3%	benign(0.001)	tolerated(0.1)	neutral(0.286)	NULL
LAMA1	284217	genome.wustl.edu	37	18	6992637	6992637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005559.2	-1	validated	p.Q1697H	0.035	413	0%	255	22.4%	0	-	possibly_damaging(0.654)	deleterious(0.04)	deleterious(0.579)	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I
LAMA1	284217	genome.wustl.edu	37	18	6999986	6999986	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005559.2	-1	validated	p.T1465P	1.000	155	0%	115	25.2%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
LAMA1	284217	genome.wustl.edu	37	18	7002317	7002317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005559.2	-1	validated	p.T1443I	0.002	210	0%	130	24.6%	0	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
LAMA1	284217	genome.wustl.edu	37	18	7010203	7010203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005559.2	-1	validated	p.R1290K	0.955	350	0%	230	20.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00281
LAMA1	284217	genome.wustl.edu	37	18	7013996	7013996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005559.2	-1	validated	p.G1061S	1.000	55	0%	43	32.6%	0	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
LAMA1	284217	genome.wustl.edu	37	18	7035994	7035994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005559.2	-1	validated	p.I611V	1.000	231	0%	147	14.3%	0	-	possibly_damaging(0.793)	tolerated(0.09)	deleterious(0.595)	HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00281
RAB12	201475	genome.wustl.edu	37	18	8638254	8638254	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001025300.2	+1	validated	p.C243*	1.000	325	0%	146	23.3%	40	42.5%	-	-	-	superfamily_SSF52540
SOGA2	23255	genome.wustl.edu	37	18	8796350	8796350	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015210.3	+1	predicted	p.L711I	1.000	235	0%	185	22.2%	3	100%	possibly_damaging(0.526)	tolerated(0.33)	neutral(0.201)	NULL
SOGA2	23255	genome.wustl.edu	37	18	8819124	8819124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015210.3	+1	predicted	p.L1008P	0.299	40	0%	37	13.5%	3	33.3%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
NDUFV2	4729	genome.wustl.edu	37	18	9126840	9126840	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021074.4	+1	reviewed	p.T197	0.985	166	0%	242	15.7%	462	28.7%	-	-	-	HMMPfam_Complex1_24kDa,superfamily_Thiordxn-like_fd
ANKRD12	23253	genome.wustl.edu	37	18	9256405	9256405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015208.3	+1	validated	p.S1047F	1.000	126	0%	66	21.2%	0	-	benign(0.313)	deleterious(0.04)	neutral(0.447)	superfamily_Ankyrin repeat
ANKRD12	23253	genome.wustl.edu	37	18	9257455	9257455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015208.3	+1	validated	p.T1397I	0.002	146	0%	67	20.9%	1	100%	benign(0.198)	tolerated(0.08)	neutral(0.319)	superfamily_Ankyrin repeat
ANKRD12	23253	genome.wustl.edu	37	18	9281086	9281086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015208.3	+1	validated	p.V2051I	1.000	218	0%	142	25.4%	11	54.5%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	superfamily_Ankyrin repeat
TWSG1	57045	genome.wustl.edu	37	18	9359985	9359985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020648.5	+1	validated	p.R47W	1.000	310	0%	156	21.8%	32	12.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PPP4R1	9989	genome.wustl.edu	37	18	9563389	9563389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042388.1	-1	validated	p.S578N	1.000	382	0%	153	22.2%	21	42.8%	benign(0)	tolerated(0.33)	neutral(0.024)	superfamily_ARM repeat
NAPG	8774	genome.wustl.edu	37	18	10548298	10548298	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003826.2	+1	reviewed	p.K196N	1.000	335	0%	133	24.8%	7	42.8%	possibly_damaging(0.668)	deleterious(0.02)	deleterious(0.619)	superfamily_TPR-like
PIEZO2	63895	genome.wustl.edu	37	18	10677848	10677848	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000503781	-1	known	p.S440	0.959	290	0%	131	18.3%	1	0%	-	-	-	NULL
ENSG00000175388	0	genome.wustl.edu	37	18	10758117	10758117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000383408	-1	known	p.L521P	1.000	242	0%	108	10.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ENSG00000168738	0	genome.wustl.edu	37	18	10857086	10857086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000302079	-1	known	p.S78P	0.960	356	0%	151	17.9%	0	-	possibly_damaging(0.496)	tolerated(0.25)	neutral(0.203)	NULL
SLC35G4	646000	genome.wustl.edu	37	18	11610123	11610123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_928960.2	+1	model	p.L177I	0.861	145	0%	196	22.4%	0	-	possibly_damaging(0.942)	tolerated(0.83)	neutral(0.388)	NULL
LOC729602	729602	genome.wustl.edu	37	18	11621122	11621122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344140.1	-1	model	p.V206I	0.057	202	0%	126	19%	0	-	-	-	-	HMMPfam_NPIP
MPPE1	65258	genome.wustl.edu	37	18	11884569	11884569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023075.4	-1	validated	p.V356M	0.002	173	0%	137	10.2%	107	19.6%	benign(0.046)	tolerated(0.06)	neutral(0.325)	superfamily_Metallo-dependent phosphatases
MPPE1	65258	genome.wustl.edu	37	18	11886524	11886524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023075.4	-1	validated	p.V281M	0.994	103	0%	128	24.2%	65	30.7%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
ENSG00000231452	0	genome.wustl.edu	37	18	12068111	12068111	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000455542	-1	known	p.L50	1.000	21	0%	57	24.6%	0	-	-	-	-	NULL
LOC100289263	100289263	genome.wustl.edu	37	18	12325292	12325292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344141.1	-1	model	p.A140T	1.000	164	0%	185	22.2%	83	28.9%	-	-	-	NULL
AFG3L2	10939	genome.wustl.edu	37	18	12337392	12337392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006796.1	-1	reviewed	p.A708V	1.000	426	0%	320	21.2%	56	39.2%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Peptidase_M41
CEP76	79959	genome.wustl.edu	37	18	12678404	12678404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024899.2	-1	provisional	p.V443I	0.726	258	0%	133	30.1%	3	33.3%	benign(0.002)	tolerated(0.4)	neutral(0.016)	NULL
CEP76	79959	genome.wustl.edu	37	18	12697313	12697313	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024899.2	-1	provisional	p.T205	0.705	320	0%	289	18.3%	12	41.6%	-	-	-	NULL
CEP76	79959	genome.wustl.edu	37	18	12699093	12699093	+	Silent	SNP	C	C	T	rs144883006	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024899.2	-1	provisional	p.T135	0.888	279	0%	251	23.5%	5	100%	-	-	-	NULL
PSMG2	56984	genome.wustl.edu	37	18	12724607	12724607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020232.3	+1	provisional	p.L231I	0.454	169	0%	102	27.5%	194	36.5%	benign(0)	tolerated(0.91)	-	HMMPfam_HCCA3
CEP192	55125	genome.wustl.edu	37	18	13114146	13114146	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032142.3	+1	validated	p.N1799K	0.001	223	0%	172	13.4%	19	26.3%	benign(0.023)	tolerated(0.56)	neutral(0.007)	NULL
CEP192	55125	genome.wustl.edu	37	18	13116476	13116476	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032142.3	+1	validated	p.R1868*	0.991	174	0%	134	20.1%	23	26%	-	-	-	NULL
CEP192	55125	genome.wustl.edu	37	18	13124693	13124693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032142.3	+1	validated	p.A1917V	0.962	233	0%	268	14.2%	17	23.5%	possibly_damaging(0.926)	deleterious(0.05)	deleterious(0.720)	NULL
C18orf1	753	genome.wustl.edu	37	18	13621165	13621165	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181481.3	+1	validated	p.V77	1.000	123	0%	124	27.4%	6	0%	-	-	-	NULL
MC5R	4161	genome.wustl.edu	37	18	13826657	13826657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005913.1	+1	provisional	p.R298H	1.000	272	0%	266	25.2%	0	-	possibly_damaging(0.857)	deleterious(0.01)	deleterious(0.737)	superfamily_Family A G protein-coupled receptor-like
MC2R	4158	genome.wustl.edu	37	18	13885115	13885115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000529.2	-1	reviewed	p.A135T	0.997	120	0%	71	25.4%	0	-	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC646359	646359	genome.wustl.edu	37	18	14378210	14378210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_929288.3	-1	model	p.R185G	0.450	86	0%	95	25.3%	0	-	-	-	-	HMMPfam_TRF,superfamily_Telomeric repeat binding factor (TRF) dimerisation domain
ANKRD30B	374860	genome.wustl.edu	37	18	14850368	14850368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145029.1	+1	validated	p.S1065I	0.003	136	0%	126	24.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14852019	14852019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145029.1	+1	validated	p.S1240F	0.987	255	0%	149	16.1%	0	-	benign(0.023)	tolerated(0.24)	neutral(0.038)	NULL
ROCK1	6093	genome.wustl.edu	37	18	18572881	18572881	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005406.2	-1	reviewed	p.Q635*	1.000	440	0%	142	21.8%	12	8.3%	-	-	-	NULL
ROCK1	6093	genome.wustl.edu	37	18	18619434	18619434	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005406.2	-1	reviewed	p.D350	1.000	292	0%	230	16.1%	8	0%	-	-	-	HMMSmart_S_TK_X,superfamily_Kinase_like
GREB1L	80000	genome.wustl.edu	37	18	18983947	18983947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142966.1	+1	provisional	p.T275I	1.000	562	0%	308	20.8%	0	-	unknown(0)	tolerated(0.13)	-	NULL
ESCO1	114799	genome.wustl.edu	37	18	19140865	19140865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052911.2	-1	validated	p.Q636H	0.996	384	0%	192	22.4%	14	50%	possibly_damaging(0.714)	tolerated(0.07)	deleterious(0.577)	NULL
MIB1	57534	genome.wustl.edu	37	18	19429183	19429183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020774.2	+1	validated	p.S807Y	1.000	237	0%	152	17.1%	2	50%	benign(0.261)	deleterious(0.03)	neutral(0.392)	superfamily_SSF57850
GATA6	2627	genome.wustl.edu	37	18	19762801	19762801	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005257.3	+1	validated	p.C504*	1.000	298	0%	282	20.6%	6	16.6%	-	-	-	NULL
TMEM241	85019	genome.wustl.edu	37	18	20965024	20965024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032933.4	-1	validated	p.P96L	1.000	323	0%	141	15.6%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Multidrug resistance efflux transporter EmrE
RIOK3	8780	genome.wustl.edu	37	18	21044219	21044219	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003831.3	+1	reviewed	p.S125	0.918	390	0%	255	23.9%	10	30%	-	-	-	NULL
RIOK3	8780	genome.wustl.edu	37	18	21053482	21053482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003831.3	+1	reviewed	p.R302H	1.000	268	0%	111	19.8%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00090,superfamily_Protein kinase-like (PK-like),HMMPfam_RIO1
RIOK3	8780	genome.wustl.edu	37	18	21057003	21057003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003831.3	+1	reviewed	p.V403I	0.990	404	0%	206	26.2%	12	33.3%	benign(0.017)	tolerated(0.16)	neutral(0.060)	HMMSmart_SM00090,superfamily_Protein kinase-like (PK-like),HMMPfam_RIO1,PatternScan_RIO1
NPC1	4864	genome.wustl.edu	37	18	21140370	21140370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000271.4	-1	reviewed	p.A236S	0.912	89	0%	43	32.6%	9	66.6%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
LAMA3	3909	genome.wustl.edu	37	18	21523913	21523913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198129.1	+1	reviewed	p.C3063Y	0.964	268	0%	126	23%	45	44.4%	benign(0)	tolerated(0.96)	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
LAMA3	3909	genome.wustl.edu	37	18	21532976	21532976	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198129.1	+1	reviewed	p.L3253	0.999	271	0%	130	17.7%	187	41.1%	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CABYR	26256	genome.wustl.edu	37	18	21736378	21736378	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012189.2	+1	reviewed	p.G305*	1.000	198	0%	154	21.4%	1	0%	-	-	-	NULL
IMPACT	55364	genome.wustl.edu	37	18	22028090	22028090	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018439.3	+1	validated	p.Q234	1.000	415	0%	231	17.7%	7	28.5%	-	-	-	HMMPfam_UPF0029,superfamily_Ribosomal protein S5 domain 2-like
PSMA8	143471	genome.wustl.edu	37	18	23713974	23713974	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144662.2	+1	validated	p.D15	0.797	131	0%	133	23.3%	0	-	-	-	-	HMMPfam_Proteasome_A_N,PatternScan_PROTEASOME_A,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
KCTD1	284252	genome.wustl.edu	37	18	24126750	24126750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142730.1	-1	validated	p.G584E	1.000	146	0%	146	14.4%	33	33.3%	benign(0.051)	deleterious(0)	neutral(0.448)	NULL
KCTD1	284252	genome.wustl.edu	37	18	24126863	24126863	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142730.1	-1	validated	p.I546	0.990	55	0%	78	29.5%	20	30%	-	-	-	NULL
CHST9	83539	genome.wustl.edu	37	18	24496690	24496690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031422.4	-1	validated	p.A289T	1.000	234	0%	93	18.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_2
DSC3	1825	genome.wustl.edu	37	18	28584188	28584188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001941.3	-1	reviewed	p.R678H	0.000	280	0%	113	21.2%	0	-	benign(0.017)	tolerated(0.2)	neutral(0.050)	superfamily_Cadherin-like
DSC3	1825	genome.wustl.edu	37	18	28586952	28586952	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001941.3	-1	reviewed	p.V603	0.000	327	0%	111	25.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSC3	1825	genome.wustl.edu	37	18	28604394	28604394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001941.3	-1	reviewed	p.R232S	0.995	241	0%	121	20.7%	0	-	possibly_damaging(0.505)	deleterious(0.04)	deleterious(0.518)	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
DSC2	1824	genome.wustl.edu	37	18	28648064	28648064	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024422.3	-1	reviewed	p.R875*	0.200	180	0%	73	20.5%	1	100%	-	-	-	NULL
DSC2	1824	genome.wustl.edu	37	18	28660282	28660282	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024422.3	-1	reviewed	p.Q434*	0.981	553	0%	198	23.2%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSC1	1823	genome.wustl.edu	37	18	28711606	28711606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024421.2	-1	reviewed	p.R813K	1.000	250	0%	92	16.3%	0	-	benign(0.308)	tolerated(0.18)	neutral(0.152)	NULL
DSC1	1823	genome.wustl.edu	37	18	28720266	28720266	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024421.2	-1	reviewed	e10-2	1.000	121	0%	93	19.4%	0	-	-	-	-	-
DSG1	1828	genome.wustl.edu	37	18	28908287	28908287	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001942.2	+1	reviewed	p.E118*	1.000	237	0%	99	20.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSG4	147409	genome.wustl.edu	37	18	28991146	28991146	+	Missense_Mutation	SNP	C	C	T	rs188617814	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134453.1	+1	reviewed	p.A716V	0.000	193	0%	159	24.5%	0	-	benign(0.036)	tolerated(0.2)	neutral(0.051)	NULL
DSG4	147409	genome.wustl.edu	37	18	28993052	28993052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134453.1	+1	reviewed	p.P892S	0.910	321	0%	272	19.5%	0	-	benign(0.005)	tolerated(0.31)	neutral(0.027)	NULL
DSG4	147409	genome.wustl.edu	37	18	28993460	28993460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134453.1	+1	reviewed	p.P1028T	0.982	127	0%	113	18.6%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
DSG3	1830	genome.wustl.edu	37	18	29044104	29044104	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001944.2	+1	reviewed	p.K344*	0.076	187	0%	109	26.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DSG3	1830	genome.wustl.edu	37	18	29054188	29054188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001944.2	+1	reviewed	p.G736C	0.811	172	0%	139	15.1%	0	-	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	NULL
DSG2	1829	genome.wustl.edu	37	18	29102122	29102122	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001943.3	+1	reviewed	p.I200	0.001	268	0%	110	21.8%	7	42.8%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
RNF138	51444	genome.wustl.edu	37	18	29704758	29704758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016271.3	+1	reviewed	p.R171C	1.000	564	0%	341	16.7%	17	47%	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	HMMSmart_SM00184
KLHL14	57565	genome.wustl.edu	37	18	30257159	30257159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020805.1	-1	provisional	p.V575M	1.000	159	0%	60	25%	16	50%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
ASXL3	80816	genome.wustl.edu	37	18	31323013	31323013	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030632.1	+1	provisional	p.Q1067	1.000	54	0%	49	14.3%	0	-	-	-	-	NULL
ASXL3	80816	genome.wustl.edu	37	18	31323378	31323378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030632.1	+1	provisional	p.S1189I	0.007	129	0%	130	22.3%	0	-	benign(0.039)	deleterious(0)	neutral(0.447)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31323801	31323801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030632.1	+1	provisional	p.A1330D	0.997	103	0%	74	28.4%	0	-	possibly_damaging(0.774)	deleterious(0)	deleterious(0.733)	NULL
NOL4	8715	genome.wustl.edu	37	18	31538313	31538313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003787.3	-1	validated	p.L376I	1.000	421	0.2%	150	29.3%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
DTNA	1837	genome.wustl.edu	37	18	32431845	32431845	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001390.4	+1	reviewed	p.A468	0.993	184	0%	87	14.9%	0	-	-	-	-	NULL
ZNF397	84307	genome.wustl.edu	37	18	32822746	32822746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135178.2	+1	reviewed	p.E104D	1.000	182	0%	152	13.2%	6	50%	possibly_damaging(0.791)	deleterious(0.02)	deleterious(0.679)	HMMPfam_SCAN,HMMSmart_SM00431
ZNF397	84307	genome.wustl.edu	37	18	32825334	32825334	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135178.2	+1	reviewed	p.L222*	0.096	309	0%	248	27%	4	50%	-	-	-	NULL
ZNF396	252884	genome.wustl.edu	37	18	32949590	32949590	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145756.2	-1	validated	p.A199	0.064	309	0%	297	20.5%	4	50%	-	-	-	NULL
ZNF396	252884	genome.wustl.edu	37	18	32949625	32949625	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145756.2	-1	validated	e3-1	0.950	237	0.4%	216	18.1%	0	-	-	-	-	-
GALNT1	2589	genome.wustl.edu	37	18	33263508	33263508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020474.3	+1	reviewed	p.C212Y	1.000	325	0%	75	25.3%	29	58.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
SLC39A6	25800	genome.wustl.edu	37	18	33694322	33694322	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012319.3	-1	validated	p.V527	1.000	595	0%	300	12%	24	12.5%	-	-	-	HMMPfam_Zip
SLC39A6	25800	genome.wustl.edu	37	18	33706420	33706420	+	Missense_Mutation	SNP	G	G	A	rs182934166	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012319.3	-1	validated	p.A184V	0.577	402	0%	362	23.8%	13	46.1%	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
SLC39A6	25800	genome.wustl.edu	37	18	33706643	33706643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012319.3	-1	validated	p.R110C	0.866	1055	0.1%	854	24.5%	15	46.6%	benign(0.235)	tolerated(0.06)	neutral(0.346)	NULL
MOCOS	55034	genome.wustl.edu	37	18	33795778	33795778	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017947.2	+1	validated	p.S545	0.000	73	0%	37	21.6%	5	60%	-	-	-	NULL
FHOD3	80206	genome.wustl.edu	37	18	34298401	34298401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025135.2	+1	validated	p.P872H	1.000	133	0%	99	23.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_FH2_actin_bd
SETBP1	26040	genome.wustl.edu	37	18	42618461	42618461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015559.2	+1	validated	p.P1338S	1.000	367	0%	163	16%	2	0%	benign(0.011)	tolerated(0.99)	neutral(0.001)	NULL
SLC14A2	8170	genome.wustl.edu	37	18	43219801	43219801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007163.3	+1	validated	p.S312P	1.000	179	0%	66	18.2%	0	-	possibly_damaging(0.528)	deleterious(0.03)	deleterious(0.542)	HMMPfam_UT
SLC14A2	8170	genome.wustl.edu	37	18	43243845	43243845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007163.3	+1	validated	p.W483R	1.000	131	0%	39	12.8%	0	-	benign(0.079)	deleterious(0)	neutral(0.450)	NULL
SLC14A2	8170	genome.wustl.edu	37	18	43249348	43249348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007163.3	+1	validated	p.T705N	0.916	264	0%	125	22.4%	0	-	benign(0.162)	deleterious(0.01)	neutral(0.420)	HMMPfam_UT
SLC14A1	6563	genome.wustl.edu	37	18	43307277	43307277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128588.3	+1	reviewed	p.R14H	0.000	88	0%	51	23.5%	0	-	benign(0.001)	tolerated(0.58)	neutral(0.005)	NULL
EPG5	57724	genome.wustl.edu	37	18	43432479	43432479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020964.2	-1	validated	p.V2565I	0.038	410	0.7%	214	23.8%	6	33.3%	benign(0.021)	tolerated(0.32)	neutral(0.025)	NULL
EPG5	57724	genome.wustl.edu	37	18	43437952	43437952	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020964.2	-1	validated	p.D2436	0.618	127	0%	62	24.2%	12	58.3%	-	-	-	NULL
PSTPIP2	9050	genome.wustl.edu	37	18	43591155	43591155	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024430.3	-1	validated	p.R116*	0.993	688	0.1%	357	23%	4	0%	-	-	-	NULL
ATP5A1	498	genome.wustl.edu	37	18	43667197	43667197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001937.1	-1	reviewed	p.A318D	1.000	82	0%	58	19%	887	40.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ATP-synt_ab,superfamily_P-loop containing nucleoside triphosphate hydrolases
HAUS1	115106	genome.wustl.edu	37	18	43699990	43699990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138443.3	+1	validated	p.L147S	1.000	226	0%	147	29.3%	59	44%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LOXHD1	125336	genome.wustl.edu	37	18	44065065	44065065	+	Silent	SNP	G	G	A	rs146200756	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145472.2	-1	reviewed	p.N922	0.994	323	0%	163	18.4%	0	-	-	-	-	HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
LOXHD1	125336	genome.wustl.edu	37	18	44104508	44104508	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144612.6	-1	reviewed	p.I1321	0.728	110	0%	60	20%	0	-	-	-	-	NULL
LOXHD1	125336	genome.wustl.edu	37	18	44113259	44113259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144612.6	-1	reviewed	p.D1136G	1.000	211	0%	111	14.4%	0	-	probably_damaging(0.977)	tolerated(0.34)	neutral(0.442)	HMMPfam_PLAT,superfamily_Lipase_LipOase
ST8SIA5	29906	genome.wustl.edu	37	18	44266212	44266212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013305.4	-1	reviewed	p.A165D	1.000	113	0%	104	11.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_29
TCEB3B	51224	genome.wustl.edu	37	18	44560002	44560002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016427.2	-1	reviewed	p.S545N	0.000	114	0%	121	16.5%	0	-	benign(0.134)	tolerated(0.34)	neutral(0.035)	HMMPfam_Elongin_A
TCEB3B	51224	genome.wustl.edu	37	18	44561410	44561410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016427.2	-1	reviewed	p.L76M	0.008	207	0%	299	21.4%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMSmart_TFS2N,HMMPfam_TFIIS
TCEB3B	51224	genome.wustl.edu	37	18	44561534	44561534	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016427.2	-1	reviewed	p.L34	0.000	348	0%	404	15.3%	0	-	-	-	-	HMMSmart_TFS2N,HMMPfam_TFIIS
KATNAL2	83473	genome.wustl.edu	37	18	44579417	44579417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031303.2	+1	validated	p.A25S	1.000	342	0%	187	11.2%	4	0%	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
ZBTB7C	201501	genome.wustl.edu	37	18	45556117	45556117	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039360.1	-1	validated	p.T458	1.000	47	0%	52	23.1%	1	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZBTB7C	201501	genome.wustl.edu	37	18	45566596	45566596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039360.1	-1	validated	p.E295K	1.000	41	0%	35	25.7%	1	0%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
ZBTB7C	201501	genome.wustl.edu	37	18	45566677	45566677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039360.1	-1	validated	p.A268T	0.758	46	0%	33	27.3%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
ZBTB7C	201501	genome.wustl.edu	37	18	45567151	45567151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039360.1	-1	validated	p.A110T	1.000	410	0.2%	227	26%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
DYM	54808	genome.wustl.edu	37	18	46645178	46645178	+	Missense_Mutation	SNP	C	C	T	rs190980988	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017653.3	-1	reviewed	p.R561H	1.000	554	0%	232	23.7%	45	48.8%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Dymeclin
DYM	54808	genome.wustl.edu	37	18	46645263	46645263	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017653.3	-1	reviewed	p.R533	1.000	490	0.2%	218	23.9%	39	33.3%	-	-	-	HMMPfam_Dymeclin
RPL17	6139	genome.wustl.edu	37	18	47015920	47015920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000985.3	-1	reviewed	p.G106S	1.000	93	0%	129	20.2%	1076	32.3%	benign(0.326)	deleterious(0.01)	deleterious(0.508)	HMMPfam_Ribosomal_L22,superfamily_Ribosomal protein L22
LIPG	9388	genome.wustl.edu	37	18	47088691	47088691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006033.2	+1	reviewed	p.V5I	0.000	86	0%	68	25%	0	-	benign(0.003)	tolerated(0.14)	neutral(0.249)	NULL
MYO5B	4645	genome.wustl.edu	37	18	47566570	47566570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080467.2	-1	reviewed	p.V85I	0.998	365	0%	140	22.1%	10	50%	possibly_damaging(0.584)	deleterious(0.03)	deleterious(0.566)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
CXXC1	30827	genome.wustl.edu	37	18	47809912	47809912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001101654.1	-1	validated	p.G520V	1.000	178	0%	198	24.7%	72	43%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MRO	83876	genome.wustl.edu	37	18	48331544	48331544	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127176.1	-1	reviewed	p.T151P	1.000	239	0%	142	19.7%	0	-	probably_damaging(0.981)	deleterious(0.03)	deleterious(0.790)	superfamily_ARM repeat
ME2	4200	genome.wustl.edu	37	18	48446923	48446923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002396.4	+1	reviewed	p.D278N	1.000	188	0%	77	22.1%	28	35.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_malic,PatternScan_MALIC_ENZYMES,superfamily_SSF53223
DCC	1630	genome.wustl.edu	37	18	50432632	50432632	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005215.3	+1	reviewed	p.R211*	0.970	199	0%	62	16.1%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
DCC	1630	genome.wustl.edu	37	18	51013239	51013239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005215.3	+1	reviewed	p.C1270Y	1.000	201	0%	58	10.3%	0	-	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	HMMPfam_Neogenin_C
STARD6	147323	genome.wustl.edu	37	18	51863550	51863550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139171.1	-1	provisional	p.R71I	0.894	520	0%	597	22.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
RAB27B	5874	genome.wustl.edu	37	18	52546599	52546599	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004163.3	+1	provisional	e2-1	1.000	310	0%	114	15.8%	0	-	-	-	-	-
TCF4	6925	genome.wustl.edu	37	18	52896231	52896231	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083962.1	-1	reviewed	p.R576*	1.000	193	0%	83	16.9%	5	0%	-	-	-	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
TCF4	6925	genome.wustl.edu	37	18	52899894	52899894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083962.1	-1	reviewed	p.P499S	0.899	194	0%	61	26.2%	2	0%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
WDR7	23335	genome.wustl.edu	37	18	54354144	54354144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015285.2	+1	reviewed	p.S219I	1.000	348	0%	153	15%	2	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMSmart_SM00320,superfamily_Prolyl oligopeptidase N-terminal domain
WDR7	23335	genome.wustl.edu	37	18	54423918	54423918	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015285.2	+1	reviewed	p.L698	1.000	143	0%	88	26.1%	2	0%	-	-	-	NULL
ONECUT2	9480	genome.wustl.edu	37	18	55103907	55103907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004852.2	+1	reviewed	p.S320L	1.000	16	0%	16	31.2%	1	0%	possibly_damaging(0.824)	tolerated(0.17)	neutral(0.371)	NULL
NARS	4677	genome.wustl.edu	37	18	55274370	55274370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004539.3	-1	validated	p.A333T	1.000	143	0%	91	26.4%	127	22.8%	benign(0.047)	tolerated(0.07)	neutral(0.322)	HMMPfam_tRNA-synt_2,superfamily_SSF55681
NARS	4677	genome.wustl.edu	37	18	55274851	55274851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004539.3	-1	validated	p.G209E	1.000	228	0%	126	19.8%	109	16.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nucleic_acid_OB
ATP8B1	5205	genome.wustl.edu	37	18	55335700	55335700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005603.4	-1	reviewed	p.A724T	1.000	349	0%	184	27.2%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF56784,superfamily_SSF81665
NEDD4L	23327	genome.wustl.edu	37	18	56002768	56002768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144967.1	+1	validated	p.T375M	1.000	204	0%	102	28.4%	7	28.5%	possibly_damaging(0.742)	tolerated(0.08)	deleterious(0.572)	NULL
NEDD4L	23327	genome.wustl.edu	37	18	56057906	56057906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144967.1	+1	validated	p.R895H	1.000	252	0%	199	24.6%	43	53.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
ALPK2	115701	genome.wustl.edu	37	18	56202886	56202886	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052947.3	-1	validated	p.G1511	0.018	429	0%	111	21.6%	0	-	-	-	-	NULL
ALPK2	115701	genome.wustl.edu	37	18	56246090	56246090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052947.3	-1	validated	p.L640I	0.000	424	0%	409	26.7%	0	-	benign(0.407)	deleterious(0)	deleterious(0.576)	NULL
ALPK2	115701	genome.wustl.edu	37	18	56246303	56246303	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052947.3	-1	validated	p.E569*	0.025	347	0.3%	277	28.9%	1	0%	-	-	-	NULL
ZNF532	55205	genome.wustl.edu	37	18	56585551	56585551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018181.4	+1	validated	p.F11S	1.000	96	0%	45	22.2%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF532	55205	genome.wustl.edu	37	18	56615353	56615353	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018181.4	+1	validated	p.L920	1.000	278	0%	130	23.8%	15	26.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
RAX	30062	genome.wustl.edu	37	18	56939638	56939638	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013435.2	-1	reviewed	p.R166	1.000	120	0%	122	27%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
KIAA1468	57614	genome.wustl.edu	37	18	59912063	59912063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020854.3	+1	validated	p.L563I	1.000	465	0.2%	126	19%	11	45.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_ARM repeat
ZCCHC2	54877	genome.wustl.edu	37	18	60237435	60237435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017742.4	+1	validated	p.S649I	1.000	199	0%	143	16.8%	6	66.6%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ZCCHC2	54877	genome.wustl.edu	37	18	60241779	60241779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017742.4	+1	validated	p.G822E	0.995	452	0%	208	23.1%	5	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PHLPP1	23239	genome.wustl.edu	37	18	60645768	60645768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194449.2	+1	validated	p.V908M	1.000	24	0%	16	25%	13	15.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
VPS4B	9525	genome.wustl.edu	37	18	61067284	61067284	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004869.3	-1	reviewed	p.Q263*	1.000	109	0%	96	24%	8	0%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SERPINB12	89777	genome.wustl.edu	37	18	61232755	61232755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080474.1	+1	provisional	p.Q241H	1.000	237	0%	65	15.4%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB3	6317	genome.wustl.edu	37	18	61323181	61323181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006919.2	-1	validated	p.L295I	0.293	340	0%	86	23.3%	0	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB3	6317	genome.wustl.edu	37	18	61324108	61324108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006919.2	-1	validated	p.S242N	1.000	667	0%	69	18.8%	0	-	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB11	89778	genome.wustl.edu	37	18	61379859	61379859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080475.2	+1	validated	p.P97S	0.000	258	0%	74	18.9%	0	-	benign(0.025)	tolerated(0.8)	neutral(0.002)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB2	5055	genome.wustl.edu	37	18	61558784	61558784	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143818.1	+1	validated	p.S36A	0.998	202	0%	67	13.4%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB8	5271	genome.wustl.edu	37	18	61645694	61645694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002640.3	+1	validated	p.A51V	0.664	134	0%	93	24.7%	4	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
CDH7	1005	genome.wustl.edu	37	18	63481778	63481778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004361.2	+1	reviewed	p.S188I	1.000	363	0%	205	18.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH7	1005	genome.wustl.edu	37	18	63511187	63511187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004361.2	+1	reviewed	p.P374L	1.000	311	0%	82	23.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00112,superfamily_Cadherin-like
CDH19	28513	genome.wustl.edu	37	18	64172159	64172159	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021153.2	-1	reviewed	p.E737*	0.285	262	0%	68	17.6%	0	-	-	-	-	HMMPfam_Cadherin_C
CDH19	28513	genome.wustl.edu	37	18	64212025	64212025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021153.2	-1	reviewed	p.E297D	0.999	454	0.2%	387	17.8%	0	-	benign(0.014)	tolerated(1)	neutral(0.001)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH19	28513	genome.wustl.edu	37	18	64235689	64235689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021153.2	-1	reviewed	p.P152S	0.999	364	0.3%	79	22.8%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_Cadherin
CDH19	28513	genome.wustl.edu	37	18	64235837	64235837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021153.2	-1	reviewed	p.I102M	0.000	342	0%	83	26.5%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DSEL	92126	genome.wustl.edu	37	18	65179211	65179211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032160.2	-1	validated	p.L889F	0.958	133	0%	135	23%	0	-	benign(0.004)	tolerated(0.27)	neutral(0.034)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DSEL	92126	genome.wustl.edu	37	18	65179517	65179517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032160.2	-1	validated	p.G787R	1.000	62	0%	68	20.6%	0	-	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	NULL
DSEL	92126	genome.wustl.edu	37	18	65179580	65179580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032160.2	-1	validated	p.V766I	0.006	96	0%	94	21.3%	0	-	benign(0.002)	tolerated(0.47)	neutral(0.011)	NULL
DSEL	92126	genome.wustl.edu	37	18	65180864	65180864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032160.2	-1	validated	p.G338S	1.000	253	0%	293	24.6%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
CCDC102B	79839	genome.wustl.edu	37	18	66506078	66506078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001093729.1	+1	validated	p.L248M	0.000	299	0%	102	22.5%	0	-	possibly_damaging(0.922)	tolerated(0.27)	neutral(0.405)	NULL
RTTN	25914	genome.wustl.edu	37	18	67721390	67721390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173630.3	-1	validated	p.T1721I	0.327	271	0%	122	26.2%	6	33.3%	benign(0.01)	tolerated(0.63)	neutral(0.004)	NULL
RTTN	25914	genome.wustl.edu	37	18	67776755	67776755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173630.3	-1	validated	p.K1294N	1.000	145	0%	91	23.1%	6	66.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
RTTN	25914	genome.wustl.edu	37	18	67795672	67795672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173630.3	-1	validated	p.R1022I	1.000	236	0%	57	22.8%	1	100%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
RTTN	25914	genome.wustl.edu	37	18	67860597	67860597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173630.3	-1	validated	p.R312W	1.000	180	0%	121	22.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
TIMM21	29090	genome.wustl.edu	37	18	71816097	71816097	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014177.2	+1	validated	p.S18	0.000	181	0%	226	18.1%	36	33.3%	-	-	-	NULL
CNDP2	55748	genome.wustl.edu	37	18	72168698	72168698	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018235.2	+1	validated	p.G65	0.088	559	0%	495	20%	156	77.5%	-	-	-	superfamily_SSF53187
CNDP2	55748	genome.wustl.edu	37	18	72183481	72183481	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018235.2	+1	validated	p.R308*	0.996	93	0%	98	18.4%	226	2.2%	-	-	-	HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Peptidase_M20_dimer,superfamily_SSF53187
CNDP1	84735	genome.wustl.edu	37	18	72244196	72244196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032649.5	+1	reviewed	p.A312T	0.018	446	0%	165	25.5%	0	-	benign(0.013)	tolerated(0.46)	neutral(0.013)	HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Bacterial exopeptidase dimerisation domain,superfamily_Zn-dependent exopeptidases
ZNF407	55628	genome.wustl.edu	37	18	72344173	72344173	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017757.2	+1	reviewed	p.N400H	0.000	121	0%	128	20.3%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TSHZ1	10194	genome.wustl.edu	37	18	72998427	72998427	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005786.4	+1	reviewed	p.A310	0.129	106	0%	127	20.5%	11	54.5%	-	-	-	NULL
TSHZ1	10194	genome.wustl.edu	37	18	72999305	72999305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005786.4	+1	reviewed	p.G603D	0.999	153	0%	140	20%	14	50%	benign(0.035)	tolerated(0.2)	neutral(0.051)	NULL
TSHZ1	10194	genome.wustl.edu	37	18	72999726	72999726	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005786.4	+1	reviewed	p.P743	0.004	39	0%	55	16.4%	19	42.1%	-	-	-	NULL
SALL3	27164	genome.wustl.edu	37	18	76754243	76754243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_171999.2	+1	validated	p.A751D	1.000	104	0%	116	22.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ATP9B	374868	genome.wustl.edu	37	18	77067206	77067206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198531.3	+1	validated	p.R582H	1.000	101	0%	68	20.6%	6	0%	benign(0.071)	tolerated(0.29)	neutral(0.034)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP9B	374868	genome.wustl.edu	37	18	77137355	77137355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198531.3	+1	validated	p.P1139H	0.999	82	0%	71	25.4%	16	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NFATC1	4772	genome.wustl.edu	37	18	77211119	77211119	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172387.1	+1	reviewed	p.I572	0.902	33	0%	40	20%	15	0%	-	-	-	superfamily_p53-like transcription factors,HMMPfam_RHD
PQLC1	80148	genome.wustl.edu	37	18	77694001	77694001	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025078.4	-1	validated	p.E120V	0.944	218	0%	177	13.6%	28	0%	possibly_damaging(0.538)	tolerated(0.24)	neutral(0.220)	NULL
ADNP2	22850	genome.wustl.edu	37	18	77894666	77894666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014913.3	+1	validated	p.A457V	0.001	64	0%	70	21.4%	9	33.3%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
ADNP2	22850	genome.wustl.edu	37	18	77896049	77896049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014913.3	+1	validated	p.C918Y	1.000	95	0%	79	16.5%	8	25%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
PPAP2C	8612	genome.wustl.edu	37	19	287668	287668	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_177543.1	-1	reviewed	p.Y117	1.000	77	0%	105	21.9%	108	53.7%	-	-	-	superfamily_AcPase_VanPerase
MIER2	54531	genome.wustl.edu	37	19	312203	312203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017550.1	-1	provisional	p.K293E	1.000	58	0%	92	30.4%	21	33.3%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
THEG	51298	genome.wustl.edu	37	19	375883	375883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016585.3	-1	reviewed	p.R30C	0.000	35	0%	54	27.8%	0	-	possibly_damaging(0.642)	deleterious(0.04)	deleterious(0.574)	NULL
SHC2	25759	genome.wustl.edu	37	19	436216	436216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012435.2	-1	validated	p.R301H	1.000	34	0%	33	18.2%	11	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729
HCN2	610	genome.wustl.edu	37	19	603774	603774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001194.3	+1	validated	p.R288H	1.000	255	0%	261	15.3%	1	0%	possibly_damaging(0.843)	deleterious(0.01)	deleterious(0.729)	HMMPfam_Ion_trans,superfamily_SSF81324
HCN2	610	genome.wustl.edu	37	19	608110	608110	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001194.3	+1	validated	p.Y455	1.000	50	0%	64	17.2%	14	64.2%	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
POLRMT	5442	genome.wustl.edu	37	19	619612	619612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005035.3	-1	reviewed	p.L1014I	1.000	32	0%	27	25.9%	81	53%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol,superfamily_SSF56672
PALM	5064	genome.wustl.edu	37	19	746705	746705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002579.2	+1	reviewed	p.T352M	0.005	17	0%	14	28.6%	23	8.6%	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	HMMPfam_Paralemmin
C19orf21	126353	genome.wustl.edu	37	19	757669	757669	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173481.2	+1	predicted	p.N241	0.000	44	0%	31	16.1%	49	44.8%	-	-	-	NULL
PTBP1	5725	genome.wustl.edu	37	19	806558	806558	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002819.4	+1	reviewed	e10+2	1.000	36	0%	23	17.4%	3	33.3%	-	-	-	-
LPPR3	79948	genome.wustl.edu	37	19	814929	814929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024888.1	-1	provisional	p.D186Y	1.000	174	0%	199	30.2%	3	66.6%	probably_damaging(1)	tolerated(0.38)	deleterious(0.517)	HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase
AZU1	566	genome.wustl.edu	37	19	828383	828383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001700.3	+1	reviewed	p.S71N	0.000	18	0%	33	24.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ARID3A	1820	genome.wustl.edu	37	19	960103	960103	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005224.2	+1	reviewed	p.L235	0.999	437	0%	271	18.1%	2	0%	-	-	-	HMMPfam_ARID,superfamily_ARID
WDR18	57418	genome.wustl.edu	37	19	990980	990980	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024100.3	+1	reviewed	p.V242	0.987	94	0%	81	17.3%	250	23.6%	-	-	-	superfamily_WD40_like
GRIN3B	116444	genome.wustl.edu	37	19	1005130	1005130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138690.1	+1	provisional	p.F544V	1.000	29	0%	33	18.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PBPe,superfamily_SSF53850
ABCA7	10347	genome.wustl.edu	37	19	1052032	1052032	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019112.3	+1	reviewed	p.C1018	1.000	48	0%	40	22.5%	3	33.3%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA7	10347	genome.wustl.edu	37	19	1063780	1063780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019112.3	+1	reviewed	p.D1957Y	1.000	63	0%	61	18%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
HMHA1	23526	genome.wustl.edu	37	19	1078017	1078017	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012292.2	+1	validated	p.R449	0.998	97	0%	94	21.3%	33	3%	-	-	-	NULL
STK11	6794	genome.wustl.edu	37	19	1220490	1220490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000455.4	+1	reviewed	p.L195M	1.000	55	0%	54	16.7%	110	16.3%	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C19orf26	255057	genome.wustl.edu	37	19	1234250	1234250	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152769.2	-1	validated	p.G230	0.500	14	0%	16	25%	4	25%	-	-	-	NULL
CIRBP-AS1	148046	genome.wustl.edu	37	19	1268385	1268385	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000436371	-1	known	p.L107	0.000	103	0%	103	28.2%	5	60%	-	-	-	NULL
CIRBP-AS1	148046	genome.wustl.edu	37	19	1269983	1269983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000436371	-1	known	p.L53M	0.000	135	0%	183	27.9%	4	50%	-	-	-	NULL
CIRBP	1153	genome.wustl.edu	37	19	1271392	1271392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001280.2	+1	validated	p.G92E	0.996	103	0%	108	23.1%	70	2.8%	unknown(0)	deleterious(0)	-	superfamily_RNA-binding domain RBD
MUM1	84939	genome.wustl.edu	37	19	1358632	1358632	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_024247.1	+1	validated	NULL	0.000	35	0%	39	30.8%	2	0%	-	-	-	-
MUM1	84939	genome.wustl.edu	37	19	1360993	1360993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032853.3	+1	validated	p.R359K	0.000	36	0%	30	16.7%	5	40%	benign(0.016)	tolerated(0.97)	neutral(0.001)	NULL
RPS15	6209	genome.wustl.edu	37	19	1440079	1440079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018.3	+1	reviewed	p.R51W	0.559	29	0%	32	18.8%	1438	39.8%	benign(0.087)	deleterious(0.04)	neutral(0.355)	HMMPfam_Ribosomal_S19,superfamily_Ribosomal protein S19
PCSK4	54760	genome.wustl.edu	37	19	1484105	1484105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017573.3	-1	validated	p.G364R	0.004	19	5.3%	30	20%	2	100%	benign(0.002)	tolerated(0.6)	neutral(0.004)	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like
PCSK4	54760	genome.wustl.edu	37	19	1487789	1487789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000441747	-1	known	p.R38K	1.000	69	0%	73	23.3%	1	0%	unknown(0)	deleterious(0)	-	superfamily_Pept_S8_S53
TCF3	6929	genome.wustl.edu	37	19	1615392	1615392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003200.2	-1	validated	p.L572M	1.000	84	1.2%	113	26.5%	58	46.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
TCF3	6929	genome.wustl.edu	37	19	1615407	1615407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003200.2	-1	validated	p.E567K	1.000	84	0%	98	24.5%	50	38%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
TCF3	6929	genome.wustl.edu	37	19	1627405	1627405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003200.2	-1	validated	p.A107T	0.002	19	0%	22	22.7%	44	38.6%	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
ATP8B3	148229	genome.wustl.edu	37	19	1799992	1799992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138813.2	-1	reviewed	p.Q502H	1.000	99	0%	120	24.2%	3	33.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_SSF56784,superfamily_SSF81660
REXO1	57455	genome.wustl.edu	37	19	1816244	1816244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020695.3	-1	validated	p.R1186I	1.000	70	0%	41	26.8%	89	47.1%	possibly_damaging(0.819)	deleterious(0.02)	deleterious(0.693)	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T
REXO1	57455	genome.wustl.edu	37	19	1816518	1816518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020695.3	-1	validated	p.R1123H	1.000	32	0%	25	24%	92	36.9%	possibly_damaging(0.883)	tolerated(0.14)	deleterious(0.595)	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T
REXO1	57455	genome.wustl.edu	37	19	1828260	1828260	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020695.3	-1	validated	p.P176	0.000	15	0%	10	40%	9	22.2%	-	-	-	NULL
REXO1	57455	genome.wustl.edu	37	19	1828593	1828593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020695.3	-1	validated	p.K65N	0.993	13	0%	19	21.1%	3	33.3%	probably_damaging(0.954)	tolerated(0.07)	deleterious(0.717)	NULL
FAM108A1	81926	genome.wustl.edu	37	19	1881304	1881304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031213.3	-1	validated	p.V88I	1.000	41	0%	36	41.7%	72	31.9%	possibly_damaging(0.734)	deleterious(0.01)	deleterious(0.674)	PatternScan_TONB_DEPENDENT_REC_1
CSNK1G2	1455	genome.wustl.edu	37	19	1979526	1979526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001319.6	+1	validated	p.R296C	0.999	75	0%	90	33.3%	103	38.8%	benign(0.003)	deleterious(0.05)	neutral(0.345)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
BTBD2	55643	genome.wustl.edu	37	19	1986553	1986553	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017797.3	-1	reviewed	p.A504	0.306	134	0.7%	141	22.7%	216	50.9%	-	-	-	HMMPfam_PHR
MKNK2	2872	genome.wustl.edu	37	19	2037757	2037757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017572.3	-1	validated	p.T409I	0.022	74	0%	86	18.6%	352	42.6%	unknown(0)	-	-	NULL
MKNK2	2872	genome.wustl.edu	37	19	2041097	2041097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199054.2	-1	validated	p.R351H	0.981	225	0.4%	180	18.9%	245	31%	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
AP3D1	8943	genome.wustl.edu	37	19	2116650	2116650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003938.5	-1	validated	p.R652H	0.456	37	0%	29	24.1%	76	43.4%	benign(0.026)	tolerated(0.27)	neutral(0.035)	HMMPfam_BLVR
DOT1L	84444	genome.wustl.edu	37	19	2210735	2210735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032482.2	+1	validated	p.R411H	1.000	57	0%	50	32%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AT_hook,HMMSmart_AT_hook
DOT1L	84444	genome.wustl.edu	37	19	2211153	2211153	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000440640	+1	known	p.G256V	0.768	67	1.5%	54	13%	4	0%	-	-	-	NULL
DOT1L	84444	genome.wustl.edu	37	19	2220218	2220218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032482.2	+1	validated	p.A935S	0.904	53	0%	87	18.4%	10	50%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
DOT1L	84444	genome.wustl.edu	37	19	2223314	2223314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032482.2	+1	validated	p.A1142D	1.000	73	0%	117	34.2%	17	52.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SF3A2	8175	genome.wustl.edu	37	19	2244751	2244751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007165.4	+1	reviewed	p.T73M	0.992	155	0%	123	23.6%	179	43.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00451
ENSG00000005206	0	genome.wustl.edu	37	19	2337441	2337441	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000452401	+1	known	e3-1	1.000	46	0%	67	29.9%	1	0%	-	-	-	-
ENSG00000005206	0	genome.wustl.edu	37	19	2353109	2353109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000452401	+1	known	p.A560T	0.008	29	0%	62	16.1%	24	33.3%	-	-	-	NULL
TMPRSS9	360200	genome.wustl.edu	37	19	2410327	2410327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182973.1	+1	provisional	p.G363S	0.970	161	0%	143	18.9%	0	-	benign(0.045)	tolerated(0.32)	neutral(0.026)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
LMNB2	84823	genome.wustl.edu	37	19	2444501	2444501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032737.2	-1	reviewed	p.A81V	0.999	86	0%	108	13%	40	15%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_Filament
THOP1	7064	genome.wustl.edu	37	19	2790577	2790577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003249.3	+1	provisional	p.V59M	0.999	43	0%	62	16.1%	34	29.4%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_SSF55486
THOP1	7064	genome.wustl.edu	37	19	2796123	2796123	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003249.3	+1	provisional	p.Y141	1.000	135	0%	136	21.3%	43	39.5%	-	-	-	superfamily_SSF55486
ZNF556	80032	genome.wustl.edu	37	19	2877392	2877392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024967.1	+1	provisional	p.R146W	0.000	236	0%	182	17.6%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	superfamily_SSF57667
ZNF57	126295	genome.wustl.edu	37	19	2917327	2917327	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173480.2	+1	validated	p.F236	0.000	210	0%	173	26.6%	8	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF57	126295	genome.wustl.edu	37	19	2918141	2918141	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173480.2	+1	validated	p.Q508*	0.000	235	0%	138	22.5%	7	14.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF77	58492	genome.wustl.edu	37	19	2934228	2934228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021217.2	-1	validated	p.K299N	0.003	474	0%	420	23.8%	4	0%	benign(0.355)	tolerated(0.58)	neutral(0.118)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF77	58492	genome.wustl.edu	37	19	2934576	2934576	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021217.2	-1	validated	p.T183	0.000	306	0%	243	21.4%	3	66.6%	-	-	-	superfamily_SSF57667
TLE6	79816	genome.wustl.edu	37	19	2989213	2989213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143986.1	+1	validated	p.R299W	0.999	34	0%	38	15.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
AES	166	genome.wustl.edu	37	19	3057741	3057741	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198969.1	-1	reviewed	e3-1	1.000	193	0%	183	19.1%	2	50%	-	-	-	-
NCLN	56926	genome.wustl.edu	37	19	3198896	3198896	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020170.3	+1	validated	e5+1	0.997	62	0%	77	15.6%	2	100%	-	-	-	-
CELF5	60680	genome.wustl.edu	37	19	3290328	3290328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021938.3	+1	reviewed	p.S429Y	1.000	166	0%	168	19.6%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
FZR1	51343	genome.wustl.edu	37	19	3533342	3533342	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136198.1	+1	validated	p.P431	0.464	63	0%	81	11.1%	64	34.3%	-	-	-	superfamily_WD40 repeat-like
HMG20B	10362	genome.wustl.edu	37	19	3575588	3575588	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006339.2	+1	validated	p.L134	0.815	230	0%	232	12.5%	199	20.6%	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
HMG20B	10362	genome.wustl.edu	37	19	3576607	3576607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000405446	+1	known	p.S23F	1.000	206	0%	216	22.2%	186	37%	unknown(0)	-	-	NULL
C19orf29	58509	genome.wustl.edu	37	19	3614432	3614432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080543.1	-1	validated	p.L440F	1.000	76	0%	92	31.5%	9	11.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cactin_mid
C19orf29	58509	genome.wustl.edu	37	19	3620798	3620798	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080543.1	-1	validated	p.A215	1.000	116	0%	182	25.8%	16	50%	-	-	-	NULL
PIP5K1C	23396	genome.wustl.edu	37	19	3643342	3643342	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012398.1	-1	reviewed	p.F516	1.000	134	0%	102	21.6%	17	29.4%	-	-	-	NULL
PIP5K1C	23396	genome.wustl.edu	37	19	3656478	3656478	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012398.1	-1	reviewed	p.D182	1.000	64	0%	76	15.8%	19	21%	-	-	-	HMMPfam_PIP5K,HMMSmart_PIPKc,superfamily_SSF56104
TJP3	27134	genome.wustl.edu	37	19	3743953	3743953	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014428.1	+1	provisional	p.P653	0.006	313	0%	340	20%	96	47.9%	-	-	-	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZFR2	23217	genome.wustl.edu	37	19	3827585	3827585	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015174.1	-1	validated	p.Q307*	0.995	50	0%	43	18.6%	0	-	-	-	-	NULL
ATCAY	85300	genome.wustl.edu	37	19	3905607	3905607	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033064.4	+1	reviewed	p.T104	0.262	248	0%	248	16.5%	0	-	-	-	-	NULL
DAPK3	1613	genome.wustl.edu	37	19	3964297	3964297	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001348.1	-1	reviewed	p.H166	1.000	131	0%	128	29.7%	98	33.6%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
EEF2	1938	genome.wustl.edu	37	19	3979994	3979994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001961.3	-1	reviewed	p.V473M	1.000	63	0%	50	14%	2006	45%	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins
PIAS4	51588	genome.wustl.edu	37	19	4012926	4012926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015897.2	+1	provisional	p.M11I	1.000	90	0%	124	14.5%	15	46.6%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
MAP2K2	5605	genome.wustl.edu	37	19	4099275	4099275	+	Silent	SNP	C	C	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030662.3	-1	reviewed	p.R281	1.000	26	0%	21	19%	296	38.8%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
EBI3	10148	genome.wustl.edu	37	19	4236963	4236963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005755.2	+1	reviewed	p.L190I	0.993	77	0%	68	10.3%	5	0%	probably_damaging(0.981)	tolerated(0.22)	neutral(0.467)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CCDC94	55702	genome.wustl.edu	37	19	4251073	4251073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018074.4	+1	provisional	p.R59W	0.915	254	0%	222	19.4%	19	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF572
SHD	56961	genome.wustl.edu	37	19	4284899	4284899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020209.3	+1	validated	p.Q238H	1.000	45	0%	48	20.8%	0	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	HMMSmart_SH2,superfamily_SSF55550
TMIGD2	126259	genome.wustl.edu	37	19	4292743	4292743	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144615.2	-1	validated	p.P234	0.000	62	0%	46	23.9%	2	0%	-	-	-	NULL
MPND	84954	genome.wustl.edu	37	19	4357325	4357325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032868.4	+1	validated	p.P358S	1.000	24	0%	32	21.9%	55	38.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Mov34,superfamily_JAB1/MPN domain
HDGFRP2	84717	genome.wustl.edu	37	19	4488840	4488840	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001520.1	+1	reviewed	p.N152	1.000	65	0%	67	20.9%	110	37.2%	-	-	-	NULL
PLIN4	729359	genome.wustl.edu	37	19	4511421	4511421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080400.1	-1	provisional	p.L837M	0.000	269	0.4%	267	15.4%	0	-	benign(0.01)	tolerated(0.26)	neutral(0.035)	NULL
PLIN5	440503	genome.wustl.edu	37	19	4531745	4531745	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013706.2	-1	validated	p.H50	1.000	9	0.000	7	0.571	0	-	-	-	-	HMMPfam_Perilipin
LRG1	116844	genome.wustl.edu	37	19	4538481	4538481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052972.2	-1	validated	p.S172Y	0.919	72	0%	82	14.6%	27	25.9%	probably_damaging(0.96)	tolerated(0.06)	deleterious(0.726)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
LRG1	116844	genome.wustl.edu	37	19	4538920	4538920	+	Missense_Mutation	SNP	G	G	T	rs189006181	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052972.2	-1	validated	p.L26M	0.544	54	0%	62	9.7%	25	8%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	superfamily_SSF52058
SEMA6B	10501	genome.wustl.edu	37	19	4555090	4555090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032108.2	-1	reviewed	p.A194T	1.000	144	0%	132	30.3%	8	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
C19orf10	56005	genome.wustl.edu	37	19	4664911	4664911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019107.3	-1	validated	p.Q88H	0.997	83	0%	105	21.9%	240	42.9%	benign(0.061)	tolerated(0.13)	neutral(0.257)	HMMPfam_UPF0556
LOC100133070	100133070	genome.wustl.edu	37	19	4793805	4793805	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001719147.1	-1	model	e2-1	1.000	38	0%	42	14.3%	30	13.3%	possibly_damaging(0.843)	deleterious(0)	deleterious(0.768)	-
TICAM1	148022	genome.wustl.edu	37	19	4817513	4817513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182919.2	-1	validated	p.A293T	0.001	118	0%	153	19%	18	33.3%	probably_damaging(0.994)	tolerated(0.11)	deleterious(0.724)	NULL
UHRF1	29128	genome.wustl.edu	37	19	4929423	4929423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000398240	+1	known	p.A128T	0.000	19	0%	21	28.6%	10	50%	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
UHRF1	29128	genome.wustl.edu	37	19	4941564	4941564	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000398240	+1	known	p.R283	0.451	192	0%	171	29.8%	11	63.6%	-	-	-	NULL
KDM4B	23030	genome.wustl.edu	37	19	5039858	5039858	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015015.2	+1	validated	p.P51	0.041	28	0%	31	22.6%	2	0%	-	-	-	HMMSmart_SM00545
PTPRS	5802	genome.wustl.edu	37	19	5212186	5212186	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002850.3	-1	reviewed	p.V1615	0.998	79	1.3%	79	15.2%	20	5%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRS	5802	genome.wustl.edu	37	19	5244288	5244288	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002850.3	-1	reviewed	p.Y398	0.558	126	0%	145	13.8%	3	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRS	5802	genome.wustl.edu	37	19	5262975	5262975	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002850.3	-1	reviewed	p.E193*	1.000	402	0.2%	317	17.4%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
LONP1	9361	genome.wustl.edu	37	19	5714240	5714240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004793.2	-1	reviewed	p.R158C	0.855	466	0%	369	19.8%	41	36.5%	possibly_damaging(0.76)	deleterious(0)	deleterious(0.726)	HMMPfam_LON,HMMSmart_LON
CATSPERD	257062	genome.wustl.edu	37	19	5754233	5754233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152784.3	+1	validated	p.P419S	0.002	325	0%	158	20.3%	2	0%	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	NULL
FUT6	2528	genome.wustl.edu	37	19	5831576	5831576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000150.2	-1	reviewed	p.A335T	0.000	121	0%	137	29.9%	3	66.6%	benign(0.025)	tolerated(0.59)	neutral(0.005)	HMMPfam_Glyco_transf_10
FUT3	2525	genome.wustl.edu	37	19	5844684	5844684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000149.3	-1	reviewed	p.T56I	0.001	19	0%	20	45%	1	0%	benign(0.121)	tolerated(0.12)	neutral(0.270)	HMMPfam_Glyco_transf_10
VMAC	400673	genome.wustl.edu	37	19	5908910	5908910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017921.3	+1	validated	p.Q89H	0.997	54	0%	48	20.8%	8	12.5%	benign(0.256)	deleterious(0.01)	neutral(0.432)	NULL
CAPS	828	genome.wustl.edu	37	19	5914950	5914950	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004058.3	+1	validated	e3-1	1.000	13	0%	14	28.6%	5	0%	-	-	-	-
RFX2	5990	genome.wustl.edu	37	19	6016164	6016164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000635.3	-1	reviewed	p.A239V	1.000	266	0%	233	18.9%	8	87.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	"HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"
MLLT1	4298	genome.wustl.edu	37	19	6222328	6222328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005934.3	-1	validated	p.S305L	1.000	99	0%	138	25.4%	3	33.3%	unknown(0)	deleterious(0.02)	-	NULL
SLC25A23	79085	genome.wustl.edu	37	19	6452442	6452442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024103.2	-1	validated	p.L318M	0.017	39	0%	43	18.6%	37	43.2%	benign(0.008)	tolerated(0.58)	neutral(0.005)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
SLC25A23	79085	genome.wustl.edu	37	19	6454345	6454345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024103.2	-1	validated	p.A262T	1.000	168	0%	167	16.2%	49	30.6%	benign(0.012)	tolerated(0.2)	neutral(0.050)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
DENND1C	79958	genome.wustl.edu	37	19	6478968	6478968	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024898.2	-1	validated	p.Q92	0.912	115	0%	126	22.2%	9	0%	-	-	-	HMMPfam_DENN,HMMSmart_DENN
TUBB4A	10382	genome.wustl.edu	37	19	6495305	6495305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006087.2	-1	provisional	p.G402D	1.000	131	0%	119	25.2%	5	40%	probably_damaging(0.995)	-	-	superfamily_Tubulin C-terminal domain-like
TUBB4A	10382	genome.wustl.edu	37	19	6495747	6495747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006087.2	-1	provisional	p.V255I	1.000	69	0%	66	13.6%	1	0%	benign(0.251)	-	-	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
TUBB4A	10382	genome.wustl.edu	37	19	6496148	6496148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006087.2	-1	provisional	p.R121Q	1.000	163	0%	154	28.6%	1	100%	possibly_damaging(0.796)	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
TNFSF9	8744	genome.wustl.edu	37	19	6534833	6534833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003811.3	+1	reviewed	p.A174D	0.000	53	0%	32	25%	12	16.6%	possibly_damaging(0.646)	tolerated(0.52)	neutral(0.235)	HMMPfam_TNF,HMMSmart_TNF,superfamily_TNF_like
CD70	970	genome.wustl.edu	37	19	6586323	6586323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001252.3	-1	reviewed	p.R97H	0.010	143	0%	77	24.7%	9	55.5%	probably_damaging(0.973)	tolerated(0.15)	deleterious(0.656)	HMMPfam_TNF,HMMSmart_SM00207,PatternScan_TNF_1,superfamily_TNF-like
TNFSF14	8740	genome.wustl.edu	37	19	6667134	6667134	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003807.3	-1	reviewed	p.A96	0.968	126	0%	144	20.1%	0	-	-	-	-	HMMSmart_SM00207,superfamily_TNF-like
C3	718	genome.wustl.edu	37	19	6684442	6684442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000064.2	-1	reviewed	p.P1377S	1.000	492	0%	355	22.8%	918	21%	possibly_damaging(0.875)	tolerated(0.81)	neutral(0.341)	superfamily_Alpha-macroglobulin receptor domain
C3	718	genome.wustl.edu	37	19	6714440	6714440	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000064.2	-1	reviewed	p.P174	0.000	110	0%	137	16.8%	109	75.2%	-	-	-	HMMPfam_A2M_N
TRIP10	9322	genome.wustl.edu	37	19	6743800	6743800	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004240.2	+1	validated	p.R199*	1.000	414	0%	410	20%	81	7.4%	-	-	-	NULL
SH2D3A	10045	genome.wustl.edu	37	19	6763741	6763741	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005490.2	-1	validated	p.G7*	0.851	110	0%	145	17.2%	9	44.4%	-	-	-	NULL
VAV1	7409	genome.wustl.edu	37	19	6828716	6828716	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005428.2	+1	reviewed	p.N392	1.000	80	0%	92	16.3%	11	0%	-	-	-	superfamily_SSF50729
EMR1	2015	genome.wustl.edu	37	19	6913732	6913732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001974.3	+1	reviewed	p.E397D	0.004	211	0%	66	18.2%	2	0%	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	superfamily_Family A G protein-coupled receptor-like
EMR1	2015	genome.wustl.edu	37	19	6928244	6928244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000381404	+1	known	p.L721M	0.000	446	0%	215	11.6%	0	-	possibly_damaging(0.904)	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
EMR1	2015	genome.wustl.edu	37	19	6937262	6937262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001974.3	+1	reviewed	p.T797I	0.006	217	0%	117	15.4%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
INSR	3643	genome.wustl.edu	37	19	7125296	7125296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000208.2	-1	reviewed	p.V1086M	1.000	94	0%	81	18.5%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ARHGEF18	23370	genome.wustl.edu	37	19	7518538	7518538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130955.1	+1	reviewed	p.L493F	0.998	102	1%	40	22.5%	14	50%	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	NULL
ARHGEF18	23370	genome.wustl.edu	37	19	7518592	7518592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130955.1	+1	reviewed	p.R511C	1.000	50	0%	24	37.5%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
C19orf45	374877	genome.wustl.edu	37	19	7573185	7573185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198534.2	+1	validated	p.A463S	0.000	82	0%	116	17.2%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
ZNF358	140467	genome.wustl.edu	37	19	7585087	7585087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018083.4	+1	validated	p.R320H	0.996	21	0%	17	29.4%	84	50%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MCOLN1	57192	genome.wustl.edu	37	19	7592591	7592591	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000394321	+1	known	p.F139	0.009	54	0%	64	20.3%	1	100%	-	-	-	NULL
MCOLN1	57192	genome.wustl.edu	37	19	7593856	7593856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020533.2	+1	reviewed	p.K378N	1.000	88	0%	87	23%	58	37.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans
PNPLA6	10908	genome.wustl.edu	37	19	7623968	7623968	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006702.4	+1	reviewed	p.Y1172	1.000	94	0%	91	25.3%	172	36.6%	-	-	-	superfamily_Acyl_Trfase/lysoPlipase
CAMSAP3	57662	genome.wustl.edu	37	19	7671252	7671252	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080429.2	+1	validated	p.E166	1.000	107	0%	145	18.6%	8	62.5%	-	-	-	NULL
CAMSAP3	57662	genome.wustl.edu	37	19	7672716	7672716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080429.2	+1	validated	p.A222T	1.000	29	0%	47	14.9%	1	100%	probably_damaging(0.959)	tolerated(0.12)	deleterious(0.663)	NULL
CAMSAP3	57662	genome.wustl.edu	37	19	7673022	7673022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080429.2	+1	validated	p.R238H	1.000	33	0%	37	13.5%	6	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CAMSAP3	57662	genome.wustl.edu	37	19	7677011	7677011	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080429.2	+1	validated	p.S571	0.001	71	0%	85	21.2%	13	46.1%	-	-	-	NULL
CAMSAP3	57662	genome.wustl.edu	37	19	7682830	7682830	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080429.2	+1	validated	p.Q1240*	0.572	59	0%	63	27%	95	44.2%	-	-	-	superfamily_PRC-barrel domain,HMMPfam_DUF1781
XAB2	56949	genome.wustl.edu	37	19	7684870	7684870	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020196.2	-1	validated	p.D786	1.000	20	0%	29	34.5%	171	33.9%	-	-	-	NULL
XAB2	56949	genome.wustl.edu	37	19	7687717	7687717	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020196.2	-1	validated	p.S434	0.980	85	0%	93	22.6%	96	47.9%	-	-	-	HMMSmart_HAT,superfamily_SSF48452
EVI5L	115704	genome.wustl.edu	37	19	7911463	7911463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145245.3	+1	validated	p.S12F	1.000	40	0%	71	29.6%	7	14.2%	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	NULL
MAP2K7	5609	genome.wustl.edu	37	19	7976443	7976443	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145185.2	+1	reviewed	p.F353	0.997	51	0%	54	20.4%	18	33.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TIMM44	10469	genome.wustl.edu	37	19	7992102	7992102	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006351.3	-1	validated	p.I443	0.998	21	0%	28	35.7%	68	45.5%	-	-	-	HMMPfam_Tim44
FBN3	84467	genome.wustl.edu	37	19	8162225	8162225	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032447.3	-1	reviewed	p.R1745	1.000	58	0%	41	9.8%	0	-	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
KANK3	256949	genome.wustl.edu	37	19	8387781	8387781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198471.2	-1	validated	p.T803I	0.000	127	0%	136	23.5%	17	17.6%	benign(0.201)	deleterious(0.02)	neutral(0.402)	NULL
KANK3	256949	genome.wustl.edu	37	19	8398988	8398988	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198471.2	-1	validated	p.S480	0.000	22	0%	22	27.3%	1	0%	-	-	-	NULL
HNRNPM	4670	genome.wustl.edu	37	19	8532460	8532460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005968.3	+1	validated	p.V276I	1.000	481	0%	258	15.9%	262	26.7%	benign(0.045)	deleterious(0)	neutral(0.447)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PRAM1	84106	genome.wustl.edu	37	19	8563554	8563554	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032152.3	-1	reviewed	p.R380*	0.000	11	0%	13	38.5%	5	0%	-	-	-	NULL
PRAM1	84106	genome.wustl.edu	37	19	8563792	8563792	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032152.3	-1	reviewed	p.P300	0.040	38	0%	58	25.9%	2	0%	-	-	-	NULL
MYO1F	4542	genome.wustl.edu	37	19	8586482	8586482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012335.3	-1	validated	p.S1076L	0.999	103	0%	168	23.8%	61	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ADAMTS10	81794	genome.wustl.edu	37	19	8651356	8651356	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030957.2	-1	reviewed	e19-2	1.000	31	0%	32	25%	0	-	-	-	-	-
MBD3L1	85509	genome.wustl.edu	37	19	8953494	8953494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145208.2	+1	reviewed	p.G47D	0.451	331	0%	187	30.5%	1	100%	probably_damaging(0.99)	tolerated(0.91)	neutral(0.442)	NULL
MUC16	94025	genome.wustl.edu	37	19	9000207	9000207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.P13517L	0.005	719	0%	323	21.7%	22	22.7%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain
MUC16	94025	genome.wustl.edu	37	19	9009659	9009659	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.Q13023*	0.001	659	0.2%	204	22.5%	9	33.3%	-	-	-	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain
MUC16	94025	genome.wustl.edu	37	19	9019330	9019330	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.T12519	0.143	474	0%	186	22%	4	25%	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9048751	9048751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.E10960D	0.000	464	0%	146	22.6%	1	0%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9057706	9057706	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.I9914fs	0.000	-	-	-	-	-	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9059489	9059489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.E9319D	0.000	453	0%	118	28%	1	100%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9060848	9060848	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.S8866	0.001	324	0%	89	10.1%	0	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9068215	9068215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.I6411V	0.001	551	0%	152	17.8%	2	50%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9070689	9070689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.T5586I	0.003	553	0%	101	19.8%	1	0%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9071378	9071378	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.Q5356	0.000	752	0%	213	21.1%	1	100%	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9072433	9072433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.A5005T	0.000	596	0%	148	26.4%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9073037	9073037	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.S4803	0.000	421	0%	92	34.8%	1	100%	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9075098	9075098	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.A4116	0.000	470	0%	90	27.8%	1	0%	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9083285	9083285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.A2844T	0.003	567	0%	128	31.2%	1	0%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9091771	9091771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024690.2	-1	validated	p.R15H	0.000	245	0%	66	22.7%	0	-	unknown(0)	-	-	NULL
ZNF317	57693	genome.wustl.edu	37	19	9271728	9271728	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020933.3	+1	provisional	p.T469	0.091	112	0%	40	32.5%	12	16.6%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF559	84527	genome.wustl.edu	37	19	9449989	9449989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032497.1	+1	provisional	p.A52T	0.000	563	0%	280	17.5%	2	50%	benign(0.003)	tolerated(0.37)	neutral(0.019)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF559	84527	genome.wustl.edu	37	19	9452647	9452647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032497.1	+1	provisional	p.V174I	0.000	205	0%	129	22.5%	2	50%	probably_damaging(0.957)	tolerated(0.91)	neutral(0.401)	superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9578097	9578097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152476.2	-1	validated	p.T509N	0.249	323	0%	109	24.8%	0	-	possibly_damaging(0.606)	deleterious(0.04)	deleterious(0.559)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF426	79088	genome.wustl.edu	37	19	9639990	9639990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024106.1	-1	provisional	p.R244I	0.320	658	0%	405	21.7%	1	0%	benign(0.011)	deleterious(0.01)	neutral(0.406)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF426	79088	genome.wustl.edu	37	19	9640061	9640061	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024106.1	-1	provisional	p.Q220	0.001	762	0%	452	21.7%	1	100%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF426	79088	genome.wustl.edu	37	19	9640301	9640301	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024106.1	-1	provisional	p.H140	0.041	354	0%	235	20.9%	6	16.6%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF562	54811	genome.wustl.edu	37	19	9764477	9764477	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130031.1	-1	validated	p.H143	0.321	429	0%	200	18.5%	9	55.5%	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
COL5A3	50509	genome.wustl.edu	37	19	10080339	10080339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015719.3	-1	reviewed	p.G1337V	0.998	42	0%	33	27.3%	1	0%	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
COL5A3	50509	genome.wustl.edu	37	19	10107129	10107129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015719.3	-1	reviewed	p.A468T	1.000	186	0%	148	20.9%	2	0%	unknown(0)	deleterious(0.04)	-	NULL
RDH8	50700	genome.wustl.edu	37	19	10132243	10132243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015725.2	+1	validated	p.P252S	0.989	99	0%	116	26.7%	0	-	probably_damaging(0.992)	tolerated(0.32)	deleterious(0.472)	superfamily_NAD(P)-bd
ANGPTL6	83854	genome.wustl.edu	37	19	10203345	10203345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031917.2	-1	validated	p.G445S	0.988	85	0%	109	15.6%	58	17.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
SNORD105B	100113382	genome.wustl.edu	37	19	10220501	10220501	+	RNA	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_003688.1	+1	provisional	NULL	0.976	88	0%	119	11.8%	0	-	-	-	-	-
PPAN-P2RY11	692312	genome.wustl.edu	37	19	10221277	10221277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040664.1	+1	validated	p.R340W	1.000	34	2.9%	32	25%	67	43.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
P2RY11	5032	genome.wustl.edu	37	19	10224531	10224531	+	Missense_Mutation	SNP	C	C	T	rs144883297	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002566.4	+1	reviewed	p.T81M	1.000	45	0%	53	28.3%	26	26.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DNMT1	1786	genome.wustl.edu	37	19	10270429	10270429	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130823.1	-1	reviewed	p.Q395	1.000	350	0%	188	25.5%	31	54.8%	-	-	-	NULL
ICAM4	3386	genome.wustl.edu	37	19	10397933	10397933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039132.1	+1	reviewed	p.R82H	0.000	33	0%	21	23.8%	0	-	benign(0.015)	deleterious(0.01)	neutral(0.406)	HMMPfam_ICAM_N,superfamily_SSF48726
ICAM4	3386	genome.wustl.edu	37	19	10398760	10398760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039132.1	+1	reviewed	p.S240I	0.000	250	0%	236	17.4%	6	33.3%	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
TYK2	7297	genome.wustl.edu	37	19	10464731	10464731	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003331.4	-1	reviewed	p.C965	1.000	109	0%	102	21.6%	86	41.8%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
TYK2	7297	genome.wustl.edu	37	19	10478993	10478993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003331.4	-1	reviewed	p.L99M	0.004	328	0%	217	11.5%	13	23%	benign(0.021)	tolerated(0.23)	neutral(0.043)	HMMSmart_B41
KRI1	65095	genome.wustl.edu	37	19	10664753	10664753	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023008.3	-1	validated	p.V668	0.999	46	0%	80	18.8%	13	38.4%	-	-	-	NULL
KRI1	65095	genome.wustl.edu	37	19	10668845	10668845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023008.3	-1	validated	p.L428P	0.020	313	0%	306	23.2%	34	32.3%	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_Kri1
AP1M2	10053	genome.wustl.edu	37	19	10692439	10692439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005498.4	-1	reviewed	p.S128N	1.000	208	0%	182	29.1%	73	30.1%	benign(0.115)	tolerated(0.11)	neutral(0.281)	superfamily_SNARE-like
SLC44A2	57153	genome.wustl.edu	37	19	10746125	10746125	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020428.3	+1	validated	p.N389	0.979	363	0%	345	24.3%	41	34.1%	-	-	-	HMMPfam_DUF580
CARM1	10498	genome.wustl.edu	37	19	11031614	11031614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199141.1	+1	validated	p.A510D	1.000	129	0%	102	17.6%	91	2.1%	benign(0.103)	deleterious(0.02)	neutral(0.391)	NULL
YIPF2	78992	genome.wustl.edu	37	19	11036372	11036372	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024029.3	-1	provisional	p.P119	0.177	222	0%	199	21.6%	111	38.7%	-	-	-	HMMPfam_Yip1
SMARCA4	6597	genome.wustl.edu	37	19	11096960	11096960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128849.1	+1	reviewed	p.G151S	0.964	29	0%	30	20%	27	55.5%	benign(0.06)	tolerated(0.46)	neutral(0.016)	NULL
SMARCA4	6597	genome.wustl.edu	37	19	11144050	11144050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128849.1	+1	reviewed	p.E1211K	1.000	60	0%	45	33.3%	253	49%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF52540
KANK2	25959	genome.wustl.edu	37	19	11280630	11280630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136191.2	-1	validated	p.A809T	0.999	164	0%	135	16.3%	52	17.3%	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
KANK2	25959	genome.wustl.edu	37	19	11286586	11286586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136191.2	-1	validated	p.R614W	0.989	156	0%	178	21.3%	29	27.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_Ankyrin repeat
DOCK6	57572	genome.wustl.edu	37	19	11332898	11332898	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020812.2	-1	validated	p.P1089	0.024	199	0%	172	23.3%	12	8.3%	-	-	-	NULL
ENSG00000130173	0	genome.wustl.edu	37	19	11348250	11348250	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000397785	+1	known	p.E24	0.031	51	0%	37	35.1%	1	0%	-	-	-	NULL
DOCK6	57572	genome.wustl.edu	37	19	11348887	11348887	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020812.2	-1	validated	p.G579	0.998	133	0%	72	27.8%	2	0%	-	-	-	NULL
DOCK6	57572	genome.wustl.edu	37	19	11352787	11352787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020812.2	-1	validated	p.G526D	0.998	151	0%	138	10.1%	3	0%	possibly_damaging(0.49)	tolerated(0.62)	neutral(0.167)	NULL
TSPAN16	26526	genome.wustl.edu	37	19	11409599	11409599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012466.2	+1	reviewed	p.V107L	0.458	476	0%	350	23.1%	0	-	possibly_damaging(0.552)	tolerated(0.37)	neutral(0.207)	HMMPfam_Tetraspannin
CCDC159	126075	genome.wustl.edu	37	19	11459470	11459470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000427879	+1	known	p.V21A	0.000	214	0%	196	27%	0	-	unknown(0)	deleterious(0)	-	NULL
ENSG00000105520	0	genome.wustl.edu	37	19	11475316	11475316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000427915	+1	known	p.R412W	1.000	111	0%	98	23.5%	12	25%	-	-	-	NULL
SWSAP1	126074	genome.wustl.edu	37	19	11485454	11485454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175871.3	+1	validated	p.G12D	0.997	24	0%	22	54.5%	11	63.6%	unknown(0)	deleterious(0)	-	superfamily_SSF52540
RGL3	57139	genome.wustl.edu	37	19	11510770	11510770	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001035223.2	-1	validated	p.E532V	0.991	184	0%	156	24.4%	20	55%	probably_damaging(0.997)	tolerated(0.37)	deleterious(0.485)	superfamily_Ras GEF
CCDC151	115948	genome.wustl.edu	37	19	11545634	11545634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145045.4	-1	validated	p.H68Q	0.000	123	0%	83	30.1%	0	-	benign(0.009)	tolerated(1)	neutral(0.001)	NULL
PRKCSH	5589	genome.wustl.edu	37	19	11559063	11559063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002743.2	+1	reviewed	p.E378K	1.000	51	0%	86	30.2%	345	40.2%	possibly_damaging(0.949)	tolerated(0.14)	deleterious(0.643)	NULL
PRKCSH	5589	genome.wustl.edu	37	19	11559742	11559742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002743.2	+1	reviewed	p.L427I	0.999	131	0%	171	17.5%	573	36.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Man6php_recept,HMMPfam_PRKCSH
PRKCSH	5589	genome.wustl.edu	37	19	11559980	11559980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002743.2	+1	reviewed	p.R477H	1.000	35	0%	42	16.7%	562	42.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Man6php_recept
ELAVL3	1995	genome.wustl.edu	37	19	11565652	11565652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001420.3	-1	reviewed	p.D265N	1.000	40	0%	17	41.2%	0	-	benign(0.146)	tolerated(0.18)	neutral(0.069)	NULL
ELAVL3	1995	genome.wustl.edu	37	19	11591420	11591420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001420.3	-1	reviewed	p.V2I	1.000	28	0%	25	16%	0	-	benign(0.001)	tolerated(0.15)	neutral(0.241)	superfamily_RNA-binding domain RBD
ECSIT	51295	genome.wustl.edu	37	19	11618640	11618640	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016581.3	-1	validated	p.A274	0.141	40	0%	60	15%	84	26.1%	-	-	-	NULL
ACP5	54	genome.wustl.edu	37	19	11687196	11687196	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001111034.1	-1	reviewed	p.Y199	1.000	43	0%	45	17.8%	165	1.2%	-	-	-	HMMPfam_Metallophos,superfamily_SSF56300
ZNF627	199692	genome.wustl.edu	37	19	11728117	11728117	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145295.3	+1	validated	p.R267*	0.000	290	0%	139	26.6%	8	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF627	199692	genome.wustl.edu	37	19	11728230	11728230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145295.3	+1	validated	p.E304D	0.986	282	0%	135	12.6%	10	40%	possibly_damaging(0.755)	deleterious(0.03)	deleterious(0.643)	superfamily_SSF57667
ZNF823	55552	genome.wustl.edu	37	19	11833413	11833413	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080493.2	-1	validated	p.T312	0.071	527	0%	270	16.7%	9	22.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF440	126070	genome.wustl.edu	37	19	11942580	11942580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152357.2	+1	validated	p.D197Y	0.245	435	0%	186	16.1%	3	33.3%	possibly_damaging(0.521)	deleterious(0.01)	deleterious(0.581)	superfamily_SSF57667
ZNF439	90594	genome.wustl.edu	37	19	11979027	11979027	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152262.2	+1	provisional	p.P381	0.354	275	0%	97	18.6%	1	0%	-	-	-	superfamily_SSF57667
ENSG00000188474	0	genome.wustl.edu	37	19	12223332	12223332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000339302	+1	known	p.R324W	0.075	23	0%	15	26.7%	1	0%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF20	7568	genome.wustl.edu	37	19	12244077	12244077	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021143.2	-1	validated	p.E308	0.985	263	0%	197	17.8%	4	50%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF625	90589	genome.wustl.edu	37	19	12256384	12256384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145233.2	-1	provisional	p.A217S	0.251	495	0%	315	26%	0	-	benign(0.119)	tolerated(0.15)	neutral(0.251)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF625	90589	genome.wustl.edu	37	19	12258606	12258606	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000439556	-1	known	p.V7	0.864	534	0%	427	20.4%	3	33.3%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF136	7695	genome.wustl.edu	37	19	12297840	12297840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003437.2	+1	validated	p.R216I	0.997	267	0%	147	21.1%	5	40%	probably_damaging(0.98)	tolerated(0.1)	deleterious(0.710)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF136	7695	genome.wustl.edu	37	19	12298092	12298092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003437.2	+1	validated	p.R300I	0.998	267	0%	208	18.8%	4	0%	benign(0.004)	tolerated(0.08)	neutral(0.300)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF44	51710	genome.wustl.edu	37	19	12383897	12383897	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016264.3	-1	validated	p.G391	0.996	353	0%	302	10.3%	4	50%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF44	51710	genome.wustl.edu	37	19	12384433	12384433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016264.3	-1	validated	p.R213C	0.000	413	0.2%	348	19.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF563	147837	genome.wustl.edu	37	19	12429973	12429973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145276.2	-1	validated	p.A289V	0.904	459	0%	215	20.5%	5	40%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF442	79973	genome.wustl.edu	37	19	12461659	12461659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030824.2	-1	validated	p.P247H	0.000	457	0.2%	288	25.7%	1	0%	possibly_damaging(0.687)	tolerated(0.14)	deleterious(0.495)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF443	10224	genome.wustl.edu	37	19	12541882	12541882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005815.4	-1	validated	p.K368N	0.000	632	0%	396	19.4%	6	16.6%	probably_damaging(0.99)	tolerated(0.34)	neutral(0.465)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF490	57474	genome.wustl.edu	37	19	12691321	12691321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020714.2	-1	validated	p.T523N	0.013	261	0%	197	20.8%	5	40%	benign(0.017)	tolerated(0.11)	neutral(0.272)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF791	163049	genome.wustl.edu	37	19	12739613	12739613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153358.2	+1	validated	p.L424F	0.001	221	0%	208	25%	5	20%	benign(0.082)	tolerated(0.71)	neutral(0.007)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MAN2B1	4125	genome.wustl.edu	37	19	12759108	12759108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000528.3	-1	reviewed	p.A849S	0.000	18	0%	15	26.7%	65	27.6%	benign(0.001)	tolerated(0.65)	neutral(0.003)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
TNPO2	30000	genome.wustl.edu	37	19	12816392	12816392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136196.1	-1	validated	p.A593T	1.000	65	0%	61	23%	29	58.6%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	superfamily_ARM repeat
ASNA1	439	genome.wustl.edu	37	19	12849386	12849386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004317.2	+1	validated	p.P75T	1.000	371	0%	312	16.3%	146	29.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ArsA_ATPase,superfamily_P-loop containing nucleoside triphosphate hydrolases
BEST2	54831	genome.wustl.edu	37	19	12865484	12865484	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017682.2	+1	reviewed	p.R122	0.965	33	0%	21	19%	0	-	-	-	-	HMMPfam_Bestrophin
HOOK2	29911	genome.wustl.edu	37	19	12874115	12874115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013312.2	-1	validated	p.R714H	0.290	103	0%	90	15.6%	33	39.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HOOK
HOOK2	29911	genome.wustl.edu	37	19	12881760	12881760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013312.2	-1	validated	p.E296D	1.000	54	0%	74	18.9%	14	42.8%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_HOOK
HOOK2	29911	genome.wustl.edu	37	19	12882247	12882247	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013312.2	-1	validated	p.D188	0.001	120	0%	139	19.4%	13	23%	-	-	-	HMMPfam_HOOK
PRDX2	7001	genome.wustl.edu	37	19	12907946	12907946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000428341	-1	known	p.R162Q	0.532	388	0%	420	21.9%	949	34.1%	-	-	-	NULL
PRDX2	7001	genome.wustl.edu	37	19	12912038	12912038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005809.4	-1	reviewed	p.P13L	0.998	98	0%	82	17.1%	705	38.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AhpC-TSA,superfamily_Thioredoxin-like
MAST1	22983	genome.wustl.edu	37	19	12963197	12963197	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014975.2	+1	validated	p.D355	0.756	79	0%	80	18.8%	0	-	-	-	-	superfamily_Kinase_like
LOC100287872	100287872	genome.wustl.edu	37	19	12989405	12989405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343642.1	+1	model	p.R147M	0.005	292	0%	277	24.2%	0	-	-	-	-	NULL
SYCE2	256126	genome.wustl.edu	37	19	13029108	13029108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105578.1	-1	validated	p.P20H	0.000	224	0%	221	22.2%	0	-	benign(0.354)	tolerated(0.07)	neutral(0.431)	NULL
RAD23A	5886	genome.wustl.edu	37	19	13058806	13058806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005053.2	+1	reviewed	p.V73F	1.000	527	0.2%	412	23.8%	312	41.9%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236
NFIX	4784	genome.wustl.edu	37	19	13201160	13201160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000438869	+1	known	p.G492R	1.000	168	0.6%	180	26.1%	25	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CTF_NFI
CACNA1A	773	genome.wustl.edu	37	19	13346088	13346088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127222.1	-1	reviewed	p.A1690T	1.000	194	0%	125	16%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1A	773	genome.wustl.edu	37	19	13470428	13470428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127222.1	-1	reviewed	p.L324I	1.000	323	0.6%	135	17%	0	-	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1A	773	genome.wustl.edu	37	19	13470567	13470567	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127222.1	-1	reviewed	p.P277	0.761	212	0%	90	27.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CCDC130	81576	genome.wustl.edu	37	19	13873501	13873501	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030818.2	+1	provisional	p.G270	0.122	22	0%	22	18.2%	22	31.8%	-	-	-	HMMPfam_DUF572
MRI1	84245	genome.wustl.edu	37	19	13879744	13879744	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031727.2	+1	validated	p.Y277	1.000	105	0%	195	25.1%	40	45%	-	-	-	HMMPfam_IF-2B,superfamily_NagB/RpiA/CoA transferase-like
ZSWIM4	65249	genome.wustl.edu	37	19	13928535	13928535	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023072.2	+1	validated	e8-1	0.994	42	0%	29	20.7%	0	-	-	-	-	-
ZSWIM4	65249	genome.wustl.edu	37	19	13941161	13941161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023072.2	+1	validated	p.R756H	1.000	40	0%	36	36.1%	20	55%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NANOS3	342977	genome.wustl.edu	37	19	13988256	13988256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098622.1	+1	provisional	p.R65H	0.000	45	0%	47	21.3%	0	-	benign(0.003)	tolerated(0.1)	neutral(0.286)	NULL
C19orf57	79173	genome.wustl.edu	37	19	13996858	13996858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024323.3	-1	predicted	p.S560L	0.000	59	0%	47	19.1%	0	-	benign(0.119)	tolerated(0.13)	neutral(0.262)	NULL
CC2D1A	54862	genome.wustl.edu	37	19	14040916	14040916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017721.4	+1	reviewed	p.Q912H	0.994	44	0%	37	35.1%	41	58.5%	possibly_damaging(0.716)	tolerated(0.52)	neutral(0.268)	NULL
RFX1	5989	genome.wustl.edu	37	19	14094041	14094041	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002918.4	-1	validated	p.H157	0.741	66	0%	107	20.6%	5	20%	-	-	-	NULL
IL27RA	9466	genome.wustl.edu	37	19	14150626	14150626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004843.2	+1	reviewed	p.E146D	0.806	78	0%	110	15.5%	7	0%	probably_damaging(0.971)	tolerated(0.15)	deleterious(0.654)	HMMSmart_SM00060,superfamily_Fibronectin type III
PALM3	342979	genome.wustl.edu	37	19	14165830	14165830	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145028.1	-1	validated	p.V203	0.000	96	0%	101	21.8%	0	-	-	-	-	NULL
PRKACA	5566	genome.wustl.edu	37	19	14208207	14208207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002730.3	-1	reviewed	p.P244L	1.000	79	0%	104	23.1%	82	37.8%	benign(0.211)	deleterious(0)	neutral(0.465)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PRKACA	5566	genome.wustl.edu	37	19	14208660	14208660	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002730.3	-1	reviewed	p.T154	0.832	203	0%	165	15.2%	102	27.4%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LPHN1	22859	genome.wustl.edu	37	19	14268752	14268752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008701.2	-1	reviewed	p.T831I	1.000	190	0%	202	26.7%	13	23%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_GPS,HMMSmart_SM00303
LPHN1	22859	genome.wustl.edu	37	19	14269169	14269169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008701.2	-1	reviewed	p.F787S	1.000	40	0%	40	27.5%	6	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LPHN1	22859	genome.wustl.edu	37	19	14272322	14272322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008701.2	-1	reviewed	p.P443S	1.000	84	0%	49	22.4%	2	50%	benign(0.003)	tolerated(0.06)	neutral(0.323)	NULL
LPHN1	22859	genome.wustl.edu	37	19	14288549	14288549	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008701.2	-1	reviewed	p.S26	1.000	14	0%	11	45.5%	3	33.3%	-	-	-	NULL
DDX39A	10212	genome.wustl.edu	37	19	14521970	14521970	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005804.2	-1	reviewed	p.F148	0.444	88	0%	105	22.9%	132	48.4%	-	-	-	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
DDX39A	10212	genome.wustl.edu	37	19	14523994	14523994	+	Silent	SNP	G	G	A	rs191833585	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005804.2	-1	reviewed	p.Y13	0.247	184	0%	236	23.3%	130	43%	-	-	-	NULL
PKN1	5585	genome.wustl.edu	37	19	14568874	14568874	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213560.1	+1	reviewed	p.N405	1.000	157	0%	142	27.5%	112	26.7%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PKN1	5585	genome.wustl.edu	37	19	14574911	14574911	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_213560.1	+1	reviewed	p.S565	0.000	52	0%	51	23.5%	190	36.3%	-	-	-	NULL
NDUFB7	4713	genome.wustl.edu	37	19	14677627	14677627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004146.4	-1	reviewed	p.F77L	1.000	97	0%	115	24.3%	520	37.1%	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_NDUF_B7
ZNF333	84449	genome.wustl.edu	37	19	14805892	14805892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032433.2	+1	validated	p.R25M	0.001	318	0%	292	22.9%	2	50%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF333	84449	genome.wustl.edu	37	19	14829270	14829270	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032433.2	+1	validated	p.Y377	0.000	174	0%	62	29%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
EMR2	30817	genome.wustl.edu	37	19	14854549	14854549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013447.2	-1	reviewed	p.T744M	0.782	229	0.4%	76	19.7%	3	0%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_7tm_2
EMR2	30817	genome.wustl.edu	37	19	14865913	14865913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000392964	-1	known	p.L146M	0.997	94	0%	60	16.7%	1	0%	unknown(0)	deleterious(0.02)	-	NULL
OR7C1	26664	genome.wustl.edu	37	19	14910627	14910627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198944.1	-1	validated	p.G108R	0.024	255	0%	128	21.1%	0	-	probably_damaging(0.963)	deleterious(0.04)	deleterious(0.754)	HMMPfam_7tm_1,superfamily_SSF81321
OR1I1	126370	genome.wustl.edu	37	19	15198858	15198858	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004713.1	+1	provisional	p.L328	0.010	183	0%	83	32.5%	0	-	-	-	-	NULL
SYDE1	85360	genome.wustl.edu	37	19	15224441	15224441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033025.4	+1	provisional	p.H625Q	0.994	44	0%	37	29.7%	9	44.4%	benign(0.035)	tolerated(0.07)	neutral(0.321)	NULL
ILVBL	10994	genome.wustl.edu	37	19	15233997	15233997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006844.3	-1	reviewed	p.A132V	0.992	44	0%	61	18%	53	26.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPP_enzyme_N,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
NOTCH3	4854	genome.wustl.edu	37	19	15272347	15272347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000435.2	-1	reviewed	p.R2031H	1.000	17	0%	35	20%	9	11.1%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
NOTCH3	4854	genome.wustl.edu	37	19	15272413	15272413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000435.2	-1	reviewed	p.R2009Q	0.997	33	0%	55	23.6%	18	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
NOTCH3	4854	genome.wustl.edu	37	19	15276632	15276632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000435.2	-1	reviewed	p.T1878I	1.000	19	0%	31	22.6%	15	6.6%	possibly_damaging(0.849)	deleterious(0.01)	deleterious(0.732)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NOTCH3	4854	genome.wustl.edu	37	19	15280932	15280932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000435.2	-1	reviewed	p.M1722V	1.000	64	0%	103	20.4%	21	4.7%	benign(0.001)	tolerated(0.63)	neutral(0.004)	NULL
BRD4	23476	genome.wustl.edu	37	19	15350611	15350611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_058243.2	-1	reviewed	p.V1102I	0.976	92	1.1%	67	14.9%	55	38.1%	possibly_damaging(0.789)	-	-	NULL
AKAP8	10270	genome.wustl.edu	37	19	15465846	15465846	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005858.2	-1	reviewed	p.A653	0.000	60	0%	76	32.9%	26	42.3%	-	-	-	NULL
AKAP8	10270	genome.wustl.edu	37	19	15483054	15483054	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005858.2	-1	reviewed	p.D322	1.000	242	0%	267	22.5%	16	31.2%	-	-	-	NULL
AKAP8L	26993	genome.wustl.edu	37	19	15512388	15512388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014371.2	-1	validated	p.S130L	0.992	41	0%	39	17.9%	54	53.7%	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
RASAL3	64926	genome.wustl.edu	37	19	15565598	15565598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022904.1	-1	validated	p.L610M	1.000	82	0%	135	23.7%	38	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP
PGLYRP2	114770	genome.wustl.edu	37	19	15586787	15586787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052890.3	-1	validated	p.L232I	1.000	88	1.1%	61	24.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CYP4F22	126410	genome.wustl.edu	37	19	15651359	15651359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173483.3	+1	reviewed	p.R257H	0.016	67	0%	69	29%	1	0%	benign(0.012)	deleterious(0.02)	neutral(0.384)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F8	11283	genome.wustl.edu	37	19	15734860	15734860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000441682	+1	known	p.E356D	0.964	238	0%	215	18.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
LOC100287986	100287986	genome.wustl.edu	37	19	15739019	15739019	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343618.1	-1	model	p.S101	0.000	32	0%	40	30%	0	-	-	-	-	NULL
CYP4F8	11283	genome.wustl.edu	37	19	15739644	15739644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000441682	+1	known	p.A462V	0.526	102	0%	115	13%	0	-	benign(0.144)	deleterious(0)	neutral(0.457)	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450
HSH2D	84941	genome.wustl.edu	37	19	16265283	16265283	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000253680	+1	known	p.P152	0.000	62	0%	65	16.9%	35	40%	-	-	-	NULL
AP1M1	8907	genome.wustl.edu	37	19	16338427	16338427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130524.1	+1	reviewed	p.E260K	1.000	178	0%	161	25.5%	116	32.7%	possibly_damaging(0.874)	deleterious(0)	deleterious(0.784)	HMMPfam_Adap_comp_sub,superfamily_AP50
EPS15L1	58513	genome.wustl.edu	37	19	16472599	16472599	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021235.1	-1	provisional	p.D859	1.000	147	0%	169	12.4%	15	13.3%	-	-	-	NULL
CALR3	125972	genome.wustl.edu	37	19	16601337	16601337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145046.3	-1	validated	p.R80C	0.996	426	0%	289	22.8%	0	-	possibly_damaging(0.835)	deleterious(0)	deleterious(0.763)	HMMPfam_Calreticulin,superfamily_ConA_like_lec_gl
C19orf44	84167	genome.wustl.edu	37	19	16614129	16614129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032207.2	+1	validated	p.G338E	0.000	90	0%	53	26.4%	3	33.3%	possibly_damaging(0.796)	tolerated(0.69)	neutral(0.301)	NULL
C19orf44	84167	genome.wustl.edu	37	19	16623837	16623837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032207.2	+1	validated	p.A551V	0.952	32	0%	39	28.2%	3	66.6%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
CHERP	10523	genome.wustl.edu	37	19	16631675	16631675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006387.5	-1	validated	p.M721I	1.000	108	0%	190	17.4%	37	21.6%	benign(0.058)	deleterious(0.05)	neutral(0.349)	NULL
CHERP	10523	genome.wustl.edu	37	19	16632375	16632375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006387.5	-1	validated	p.E691K	1.000	42	0%	37	29.7%	29	37.9%	possibly_damaging(0.891)	deleterious(0.04)	deleterious(0.700)	NULL
MED26	9441	genome.wustl.edu	37	19	16687311	16687311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004831.3	-1	validated	p.R444W	0.999	118	0.8%	157	21.7%	12	41.6%	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	NULL
TMEM38A	79041	genome.wustl.edu	37	19	16797207	16797207	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024074.1	+1	provisional	p.V221	0.980	344	0%	191	16.2%	8	37.5%	-	-	-	HMMPfam_DUF714
NWD1	284434	genome.wustl.edu	37	19	16874748	16874748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007525.2	+1	validated	p.E613G	0.994	60	0%	55	14.5%	0	-	probably_damaging(0.992)	tolerated(0.33)	deleterious(0.472)	NULL
NWD1	284434	genome.wustl.edu	37	19	16884094	16884094	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007525.2	+1	validated	p.P721	0.219	36	0%	13	38.5%	0	-	-	-	-	superfamily_WD40 repeat-like
NWD1	284434	genome.wustl.edu	37	19	16902224	16902224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007525.2	+1	validated	p.P867S	0.193	251	0.4%	87	27.6%	1	0%	benign(0.059)	tolerated(0.39)	neutral(0.020)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
NWD1	284434	genome.wustl.edu	37	19	16918423	16918423	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007525.2	+1	validated	p.S1120T	0.977	123	0%	57	17.5%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMSmart_SM00320,superfamily_WD40 repeat-like
SIN3B	23309	genome.wustl.edu	37	19	16980851	16980851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015260.1	+1	provisional	p.S828N	0.002	24	0%	24	20.8%	12	8.3%	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
CPAMD8	27151	genome.wustl.edu	37	19	17004035	17004035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015692.2	-1	validated	p.R1895W	0.000	88	0%	103	28.2%	4	50%	probably_damaging(0.99)	-	-	NULL
MYO9B	4650	genome.wustl.edu	37	19	17303724	17303724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004145.3	+1	reviewed	p.R994Q	0.148	39	0%	37	18.9%	21	28.5%	benign(0.049)	tolerated(0.69)	neutral(0.005)	HMMPfam_IQ,HMMSmart_IQ,superfamily_SSF52540
MYO9B	4650	genome.wustl.edu	37	19	17311162	17311162	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004145.3	+1	reviewed	p.G1433	0.001	135	0%	113	20.4%	14	35.7%	-	-	-	NULL
USHBP1	83878	genome.wustl.edu	37	19	17361161	17361161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031941.3	-1	validated	p.E662V	1.000	54	0%	50	20%	4	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
USHBP1	83878	genome.wustl.edu	37	19	17370192	17370192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031941.3	-1	validated	p.L318I	1.000	139	0%	137	13.9%	2	0%	possibly_damaging(0.791)	deleterious(0.03)	deleterious(0.661)	HMMPfam_MCC-bdg_PDZ
ANKLE1	126549	genome.wustl.edu	37	19	17394472	17394472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152363.4	+1	validated	p.R300M	0.000	39	0%	60	15%	0	-	possibly_damaging(0.705)	deleterious(0.04)	deleterious(0.603)	NULL
ANO8	57719	genome.wustl.edu	37	19	17438377	17438377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020959.2	-1	validated	p.K807R	1.000	21	0%	27	22.2%	15	40%	unknown(0)	tolerated(0.25)	-	HMMPfam_DUF590
GTPBP3	84705	genome.wustl.edu	37	19	17449934	17449934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133644.2	+1	validated	p.D255N	0.965	158	0%	160	27.5%	28	50%	benign(0.002)	tolerated(0.51)	neutral(0.009)	superfamily_SSF52540
PLVAP	83483	genome.wustl.edu	37	19	17471370	17471370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031310.1	-1	provisional	p.R430M	0.777	195	0%	135	14.8%	24	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_PV-1
SLC27A1	376497	genome.wustl.edu	37	19	17608167	17608167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198580.1	+1	provisional	p.R367H	1.000	48	0%	29	13.8%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_SSF56801
SLC27A1	376497	genome.wustl.edu	37	19	17612127	17612127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198580.1	+1	provisional	p.S561N	0.000	36	0%	44	13.6%	15	13.3%	benign(0)	tolerated(1)	-	superfamily_SSF56801
UNC13A	23025	genome.wustl.edu	37	19	17768913	17768913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080421.2	-1	validated	p.S330Y	1.000	408	0%	235	19.6%	0	-	benign(0.223)	deleterious(0)	neutral(0.467)	NULL
FCHO1	23149	genome.wustl.edu	37	19	17885262	17885262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015122.2	+1	validated	p.R299W	1.000	34	0%	52	38.5%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FCHO1	23149	genome.wustl.edu	37	19	17886898	17886898	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015122.2	+1	validated	p.A370	0.871	125	0%	41	36.6%	6	0%	-	-	-	NULL
JAK3	3718	genome.wustl.edu	37	19	17951064	17951064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000215.3	-1	reviewed	p.S410I	1.000	92	0%	99	29.3%	5	0%	benign(0.067)	tolerated(0.2)	neutral(0.053)	HMMSmart_SM00252,superfamily_SH2 domain
KCNN1	3780	genome.wustl.edu	37	19	18096162	18096162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002248.3	+1	reviewed	p.A320V	1.000	217	0%	184	10.9%	1	0%	possibly_damaging(0.469)	deleterious(0.01)	deleterious(0.559)	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
KCNN1	3780	genome.wustl.edu	37	19	18109054	18109054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002248.3	+1	reviewed	p.A491T	0.041	12	0%	17	23.5%	1	0%	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
MAST3	23031	genome.wustl.edu	37	19	18255858	18255858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015016.1	+1	validated	p.S924Y	1.000	53	0%	48	16.7%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAST3	23031	genome.wustl.edu	37	19	18256034	18256034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015016.1	+1	validated	p.V983I	1.000	64	0%	76	25%	3	0%	benign(0.123)	deleterious(0.03)	neutral(0.374)	HMMSmart_PDZ,superfamily_PDZ
MAST3	23031	genome.wustl.edu	37	19	18257792	18257792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015016.1	+1	validated	p.R1059S	0.957	49	0%	50	36%	9	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PIK3R2	5296	genome.wustl.edu	37	19	18272853	18272853	+	Missense_Mutation	SNP	C	C	T	rs148193042	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005027.2	+1	validated	p.A298V	0.008	237	0%	266	21.4%	22	45.4%	benign(0.047)	tolerated(0.2)	neutral(0.052)	NULL
IFI30	10437	genome.wustl.edu	37	19	18286007	18286007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006332.3	+1	reviewed	p.T97M	0.998	123	0%	110	23.6%	1302	21.4%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMPfam_GILT
RAB3A	5864	genome.wustl.edu	37	19	18313379	18313379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002866.4	-1	validated	p.D58N	1.000	269	0%	277	22.7%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PDE4C	5143	genome.wustl.edu	37	19	18327692	18327692	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000923.3	-1	validated	p.A448	0.295	64	0%	104	26.9%	2	100%	-	-	-	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
KIAA1683	80726	genome.wustl.edu	37	19	18375922	18375922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145304.1	-1	validated	p.G810R	0.000	72	0%	38	15.8%	1	100%	possibly_damaging(0.923)	tolerated(0.54)	neutral(0.380)	NULL
KIAA1683	80726	genome.wustl.edu	37	19	18376777	18376777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145304.1	-1	validated	p.V525M	0.000	196	0%	174	24.7%	1	100%	probably_damaging(0.978)	deleterious(0.04)	deleterious(0.769)	NULL
KIAA1683	80726	genome.wustl.edu	37	19	18377506	18377506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145304.1	-1	validated	p.K282Q	0.041	352	0%	299	20.1%	2	50%	benign(0.164)	tolerated(0.08)	neutral(0.315)	NULL
ISYNA1	51477	genome.wustl.edu	37	19	18547532	18547532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016368.4	-1	validated	p.R191C	0.989	14	0%	17	47.1%	248	51.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAD_binding_5,superfamily_NAD(P)-binding Rossmann-fold domains
ELL	8178	genome.wustl.edu	37	19	18561309	18561309	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006532.3	-1	validated	p.P481	0.003	47	0%	45	17.8%	15	26.6%	-	-	-	NULL
ELL	8178	genome.wustl.edu	37	19	18583664	18583664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006532.3	-1	validated	p.R55Q	1.000	221	0%	174	21.8%	14	35.7%	possibly_damaging(0.855)	-	-	HMMPfam_ELL
CRTC1	23373	genome.wustl.edu	37	19	18857870	18857870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098482.1	+1	validated	p.S146I	1.000	129	0%	176	25%	15	46.6%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
CRTC1	23373	genome.wustl.edu	37	19	18879597	18879597	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098482.1	+1	validated	p.I454	0.206	36	0%	44	31.8%	10	70%	-	-	-	NULL
UPF1	5976	genome.wustl.edu	37	19	18971741	18971741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002911.3	+1	reviewed	p.L803M	1.000	42	0%	71	19.7%	61	42.6%	benign(0.412)	deleterious(0)	deleterious(0.578)	superfamily_SSF52540
SUGP2	10147	genome.wustl.edu	37	19	19105284	19105284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017392.3	-1	reviewed	p.S1047L	0.995	275	0%	199	20.6%	57	38.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_G-patch,HMMSmart_SM00443
SUGP2	10147	genome.wustl.edu	37	19	19120669	19120669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017392.3	-1	reviewed	p.A778D	0.015	185	0%	143	23.1%	40	27.5%	benign(0)	tolerated(0.32)	neutral(0.024)	superfamily_Surp module (SWAP domain Pfam 01805)
ARMC6	93436	genome.wustl.edu	37	19	19162708	19162708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033415.2	+1	reviewed	p.T161I	0.009	51	0%	54	18.5%	42	40.4%	benign(0.02)	tolerated(0.07)	neutral(0.320)	HMMSmart_SM00185,superfamily_ARM repeat
ARMC6	93436	genome.wustl.edu	37	19	19162759	19162759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033415.2	+1	reviewed	p.R178H	0.937	49	0%	53	37.7%	48	39.5%	possibly_damaging(0.806)	tolerated(0.14)	deleterious(0.553)	HMMSmart_SM00185,superfamily_ARM repeat
TMEM161A	54929	genome.wustl.edu	37	19	19232220	19232220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017814.1	-1	provisional	p.H271Y	1.000	160	0%	138	18.8%	90	42.2%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	HMMPfam_Tmemb_161AB
MEF2B	100271849	genome.wustl.edu	37	19	19261516	19261516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145785.1	-1	validated	p.R10H	1.000	540	0.2%	488	21.1%	23	39.1%	possibly_damaging(0.914)	deleterious(0)	deleterious(0.810)	HMMPfam_SRF-TF,HMMSmart_SM00432,PatternScan_MADS_BOX_1,superfamily_SRF-like
RFXANK	8625	genome.wustl.edu	37	19	19308340	19308340	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003721.2	+1	reviewed	p.L116	0.350	31	0%	29	17.2%	288	44%	-	-	-	superfamily_Ankyrin repeat
RFXANK	8625	genome.wustl.edu	37	19	19310016	19310016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003721.2	+1	reviewed	p.L229I	0.999	53	0%	50	14%	510	30.1%	probably_damaging(0.986)	tolerated(0.16)	deleterious(0.494)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NCAN	1463	genome.wustl.edu	37	19	19337447	19337447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004386.2	+1	validated	p.V409M	0.837	122	0%	106	19.8%	0	-	benign(0.044)	tolerated(0.15)	neutral(0.243)	NULL
NCAN	1463	genome.wustl.edu	37	19	19344629	19344629	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004386.2	+1	validated	p.C1017	0.999	278	0%	268	19%	1	100%	-	-	-	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
HAPLN4	404037	genome.wustl.edu	37	19	19371874	19371874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023002.2	-1	validated	p.G78S	0.909	10	0%	16	31.2%	0	-	benign(0.002)	tolerated(0.44)	neutral(0.013)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SUGP1	57794	genome.wustl.edu	37	19	19416793	19416793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172231.2	-1	validated	p.G135R	1.000	10	0%	13	38.5%	17	47%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
MAU2	23383	genome.wustl.edu	37	19	19454717	19454717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015329.3	+1	validated	p.V349I	1.000	56	0%	46	23.9%	21	28.5%	possibly_damaging(0.896)	tolerated(0.16)	neutral(0.413)	HMMPfam_Cohesin_load,superfamily_TPR-like
CILP2	148113	genome.wustl.edu	37	19	19654085	19654085	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153221.2	+1	validated	p.R336*	0.464	39	0%	37	13.5%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CILP2	148113	genome.wustl.edu	37	19	19654644	19654644	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153221.2	+1	validated	p.C430	0.999	53	0%	70	25.7%	0	-	-	-	-	NULL
LPAR2	9170	genome.wustl.edu	37	19	19737799	19737799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004720.5	-1	reviewed	p.L99I	1.000	33	0%	22	22.7%	13	53.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
GMIP	51291	genome.wustl.edu	37	19	19746523	19746523	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016573.2	-1	reviewed	p.G445	0.000	78	0%	186	29.6%	11	18.1%	-	-	-	NULL
ATP13A1	57130	genome.wustl.edu	37	19	19770513	19770513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020410.2	-1	validated	p.V192M	0.979	148	0%	179	25.1%	24	45.8%	probably_damaging(0.953)	deleterious(0.04)	deleterious(0.746)	NULL
ZNF101	94039	genome.wustl.edu	37	19	19790315	19790315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033204.2	+1	provisional	p.V173L	0.701	162	0%	94	22.3%	11	45.4%	benign(0.008)	tolerated(0.13)	neutral(0.253)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF506	440515	genome.wustl.edu	37	19	19905920	19905920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099269.2	-1	validated	p.C259Y	0.847	179	0%	155	20%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF93	81931	genome.wustl.edu	37	19	20044040	20044040	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031218.3	+1	validated	p.K92	0.850	414	0%	226	13.7%	2	50%	-	-	-	NULL
ZNF93	81931	genome.wustl.edu	37	19	20044426	20044426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031218.3	+1	validated	p.R221I	0.536	110	0%	107	29.9%	5	80%	benign(0.003)	tolerated(0.2)	neutral(0.049)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF93	81931	genome.wustl.edu	37	19	20045158	20045158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031218.3	+1	validated	p.S465Y	0.000	61	0%	33	30.3%	13	46.1%	benign(0.016)	tolerated(1)	neutral(0.001)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100128975	100128975	genome.wustl.edu	37	19	20047677	20047677	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001719745.1	-1	model	p.S133R	0.982	54	0%	39	41%	0	-	-	-	-	NULL
ZNF682	91120	genome.wustl.edu	37	19	20135062	20135062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033196.2	-1	validated	p.L43M	0.967	385	0%	306	21.6%	4	50%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF90	7643	genome.wustl.edu	37	19	20228668	20228668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007138.1	+1	validated	p.R102K	0.006	618	0%	314	24.5%	1	0%	benign(0.007)	tolerated(0.42)	neutral(0.014)	NULL
ZNF90	7643	genome.wustl.edu	37	19	20229666	20229666	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007138.1	+1	validated	p.K435fs	0.027	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF486	90649	genome.wustl.edu	37	19	20308487	20308487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052852.2	+1	provisional	p.T323M	0.121	191	0%	138	23.9%	1	100%	benign(0.176)	deleterious(0.01)	neutral(0.422)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF737	100129842	genome.wustl.edu	37	19	20728763	20728763	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343624.1	-1	model	p.A82	0.129	519	0%	284	19.7%	2	50%	-	-	-	NULL
ZNF66P	7617	genome.wustl.edu	37	19	20976658	20976658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000425625	+1	known	p.R113I	0.002	591	0%	364	26.9%	3	0%	-	-	-	NULL
ZNF430	80264	genome.wustl.edu	37	19	21239788	21239788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025189.3	+1	validated	p.R225I	0.392	221	0%	229	20.5%	2	0%	benign(0.009)	tolerated(0.09)	neutral(0.297)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF430	80264	genome.wustl.edu	37	19	21240656	21240656	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025189.3	+1	validated	p.K514	0.007	267	0%	226	16.4%	4	25%	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF714	148206	genome.wustl.edu	37	19	21300877	21300877	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000291770	+1	known	p.K469	0.479	214	0%	104	14.4%	5	60%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF431	170959	genome.wustl.edu	37	19	21366070	21366070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133473.2	+1	validated	p.G322S	1.000	156	0.6%	51	33.3%	5	20%	benign(0.319)	deleterious(0.02)	deleterious(0.483)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF100	163227	genome.wustl.edu	37	19	21910391	21910391	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173531.3	-1	validated	p.A241	0.006	266	0%	305	24.6%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF100	163227	genome.wustl.edu	37	19	21910469	21910469	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173531.3	-1	validated	p.C215*	0.004	264	0%	327	20.8%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF100	163227	genome.wustl.edu	37	19	21910501	21910501	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173531.3	-1	validated	p.F205V	0.005	317	0%	362	13.3%	2	50%	possibly_damaging(0.807)	deleterious(0.01)	deleterious(0.710)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21991006	21991006	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003423.2	-1	validated	p.T611	0.307	226	0%	104	16.3%	8	75%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21992001	21992001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003423.2	-1	validated	p.R280C	0.991	157	0%	95	22.1%	7	42.8%	benign(0.017)	deleterious(0)	neutral(0.445)	superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21992531	21992531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003423.2	-1	validated	p.R103I	0.016	217	0%	83	15.7%	6	16.6%	probably_damaging(0.98)	tolerated(0.07)	deleterious(0.743)	NULL
ZNF208	7757	genome.wustl.edu	37	19	22155510	22155510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007153.3	-1	provisional	p.P676S	0.805	138	0%	42	31%	0	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	superfamily_SSF57667
ZNF257	113835	genome.wustl.edu	37	19	22271855	22271855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033468.2	+1	provisional	p.E435K	0.080	160	0.6%	84	11.9%	1	0%	benign(0.102)	deleterious(0.03)	neutral(0.372)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF676	163223	genome.wustl.edu	37	19	22363310	22363310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001411.2	-1	provisional	p.N403K	0.000	219	0%	73	19.2%	0	-	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF729	100287226	genome.wustl.edu	37	19	22496580	22496580	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000357491	+1	known	p.R121*	0.000	264	0%	167	16.8%	0	-	-	-	-	NULL
LOC100287226	100287226	genome.wustl.edu	37	19	22498582	22498582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343636.1	+1	model	p.V655A	1.000	45	0%	33	15.2%	0	-	benign(0.15)	tolerated(0.16)	neutral(0.072)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22499572	22499572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343636.1	+1	model	p.T985I	0.010	83	0%	71	18.3%	0	-	benign(0.045)	tolerated(0.23)	neutral(0.044)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22574906	22574906	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098626.1	-1	validated	p.P377	0.236	148	0%	57	26.3%	1	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF99	7652	genome.wustl.edu	37	19	22939405	22939405	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080409.1	-1	provisional	p.G922	0.951	181	0%	80	16.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22941762	22941762	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080409.1	-1	provisional	p.E226*	0.479	124	0%	78	28.2%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22942332	22942332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080409.1	-1	provisional	p.E148K	0.000	540	0.2%	201	19.4%	0	-	benign(0.001)	tolerated(1)	-	NULL
LOC646864	646864	genome.wustl.edu	37	19	23040729	23040729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001726885.1	+1	model	p.C375R	0.971	56	0%	38	18.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF728	388523	genome.wustl.edu	37	19	23158626	23158626	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001726961.1	-1	model	p.E505*	1.000	73	0%	24	16.7%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF728	388523	genome.wustl.edu	37	19	23171193	23171193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001726961.1	-1	model	p.D22Y	0.418	787	0.1%	188	18.6%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF730	100129543	genome.wustl.edu	37	19	23316977	23316977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001719792.2	+1	model	p.M75I	0.117	316	0.3%	490	19.4%	2	0%	benign(0.364)	deleterious(0.05)	neutral(0.461)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF91	7644	genome.wustl.edu	37	19	23556599	23556599	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003430.2	-1	validated	p.E66	0.024	559	0%	668	21.6%	2	50%	-	-	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF726	730087	genome.wustl.edu	37	19	24116299	24116299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000322487	+1	known	p.A461S	0.934	120	0%	125	13.6%	0	-	benign(0.278)	tolerated(0.07)	neutral(0.349)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CCNE1	898	genome.wustl.edu	37	19	30303684	30303684	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001238.1	+1	reviewed	e2+1	1.000	65	0%	85	21.2%	2	100%	-	-	-	-
CCNE1	898	genome.wustl.edu	37	19	30313163	30313163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001238.1	+1	reviewed	p.V286A	0.998	1106	0%	644	21.9%	20	45%	benign(0.368)	tolerated(0.06)	neutral(0.440)	HMMPfam_Cyclin_C
ZNF536	9745	genome.wustl.edu	37	19	30935718	30935718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014717.1	+1	provisional	p.G417S	0.951	30	0%	41	22%	0	-	benign(0.002)	tolerated(0.98)	-	NULL
ZNF536	9745	genome.wustl.edu	37	19	31039027	31039027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014717.1	+1	provisional	p.R834M	1.000	76	0%	70	22.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF536	9745	genome.wustl.edu	37	19	31039273	31039273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014717.1	+1	provisional	p.G916V	1.000	197	0%	96	14.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31767944	31767944	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020856.2	-1	validated	p.E919*	1.000	97	0%	60	10%	1	0%	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
TSHZ3	57616	genome.wustl.edu	37	19	31768155	31768155	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020856.2	-1	validated	p.S848	0.995	329	0%	172	17.4%	6	16.6%	-	-	-	NULL
ZNF507	22847	genome.wustl.edu	37	19	32843863	32843863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136156.1	+1	validated	p.P43S	1.000	268	0%	231	25.1%	0	-	benign(0.195)	tolerated(0.51)	neutral(0.027)	NULL
ZNF507	22847	genome.wustl.edu	37	19	32845207	32845207	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136156.1	+1	validated	p.R491*	0.261	177	0%	166	27.7%	1	0%	-	-	-	NULL
ANKRD27	84079	genome.wustl.edu	37	19	33134100	33134100	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032139.2	-1	validated	p.A237	0.147	476	0%	352	21.9%	3	100%	-	-	-	superfamily_SSF109993
SLC7A9	11136	genome.wustl.edu	37	19	33355104	33355104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001126335.1	-1	reviewed	p.A126T	1.000	148	0%	133	23.3%	0	-	possibly_damaging(0.943)	tolerated(0.08)	deleterious(0.688)	HMMPfam_AA_permease
RHPN2	85415	genome.wustl.edu	37	19	33487108	33487108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033103.4	-1	reviewed	p.R415I	0.031	47	0%	40	45%	48	33.3%	possibly_damaging(0.92)	deleterious(0.05)	deleterious(0.716)	HMMPfam_BRO1
GPATCH1	55094	genome.wustl.edu	37	19	33597726	33597726	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018025.2	+1	provisional	p.T402	0.000	223	0%	92	18.5%	7	28.5%	-	-	-	NULL
LRP3	4037	genome.wustl.edu	37	19	33693776	33693776	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002333.3	+1	validated	p.E48	1.000	33	0%	48	27.1%	23	43.4%	-	-	-	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
SLC7A10	56301	genome.wustl.edu	37	19	33699846	33699846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019849.2	-1	validated	p.C508Y	0.510	49	0%	89	23.6%	1	100%	benign(0.013)	tolerated(0.86)	neutral(0.001)	NULL
SLC7A10	56301	genome.wustl.edu	37	19	33703789	33703789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019849.2	-1	validated	p.T159I	0.001	204	0%	170	24.1%	0	-	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_AA_permease
PEPD	5184	genome.wustl.edu	37	19	33892709	33892709	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000285.3	-1	reviewed	p.N295	0.944	106	0%	125	23.2%	118	34.7%	-	-	-	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core
PEPD	5184	genome.wustl.edu	37	19	34002004	34002004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000285.3	-1	reviewed	p.D87N	0.660	71	0%	87	29.9%	70	47.1%	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMPfam_AMP_N,superfamily_SSF53092
GPI	2821	genome.wustl.edu	37	19	34859608	34859608	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000175.3	+1	reviewed	e4+1	1.000	184	0%	206	30.1%	2	100%	-	-	-	-
UBA2	10054	genome.wustl.edu	37	19	34934787	34934787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005499.2	+1	validated	p.S207Y	0.998	352	0%	211	18.5%	66	40.9%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	superfamily_MoeB
UBA2	10054	genome.wustl.edu	37	19	34951416	34951416	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005499.2	+1	validated	p.Q481H	1.000	234	0%	153	20.3%	93	36.5%	possibly_damaging(0.912)	tolerated(0.16)	neutral(0.423)	superfamily_MoeB
UBA2	10054	genome.wustl.edu	37	19	34957815	34957815	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005499.2	+1	validated	p.V546G	1.000	150	0%	89	16.9%	106	52.8%	benign(0.37)	deleterious(0)	deleterious(0.562)	NULL
ZNF599	148103	genome.wustl.edu	37	19	35251127	35251127	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007248.2	-1	validated	p.D193	0.001	337	0%	164	20.1%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF599	148103	genome.wustl.edu	37	19	35251339	35251339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007248.2	-1	validated	p.D123Y	0.188	174	0%	79	21.5%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ZNF30	90075	genome.wustl.edu	37	19	35435319	35435319	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099437.1	+1	validated	p.P484	0.292	314	0%	140	15%	5	20%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF30	90075	genome.wustl.edu	37	19	35435645	35435645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099437.1	+1	validated	p.G593D	0.992	215	0%	111	18.9%	6	50%	benign(0.241)	deleterious(0)	deleterious(0.469)	superfamily_C2H2 and C2HC zinc fingers
ZNF792	126375	genome.wustl.edu	37	19	35448944	35448944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175872.4	-1	validated	p.S605R	0.627	282	0%	203	25.1%	8	37.5%	possibly_damaging(0.721)	tolerated(0.15)	deleterious(0.502)	NULL
ZNF792	126375	genome.wustl.edu	37	19	35449497	35449497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175872.4	-1	validated	p.P421L	0.996	243	0%	188	23.4%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
ZNF792	126375	genome.wustl.edu	37	19	35450152	35450152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175872.4	-1	validated	p.D203N	0.001	125	0%	91	16.5%	1	0%	possibly_damaging(0.617)	deleterious(0.02)	deleterious(0.598)	NULL
SCN1B	6324	genome.wustl.edu	37	19	35530095	35530095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037.4	+1	reviewed	p.V175M	0.952	69	0%	111	19.8%	6	0%	possibly_damaging(0.901)	deleterious(0.04)	deleterious(0.706)	NULL
HPN	3249	genome.wustl.edu	37	19	35550787	35550787	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002151.2	+1	reviewed	p.T100	0.983	28	0%	25	16%	83	38.5%	-	-	-	HMMPfam_Hepsin-SRCR,superfamily_Srcr_receptor
LSR	51599	genome.wustl.edu	37	19	35757312	35757312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_205834.2	+1	validated	p.P325S	0.998	144	0%	173	24.9%	295	51.1%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	NULL
USF2	7392	genome.wustl.edu	37	19	35761709	35761709	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003367.2	+1	reviewed	e6+1	1.000	165	0.6%	190	23.7%	29	96.5%	-	-	-	-
CD22	933	genome.wustl.edu	37	19	35827176	35827176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001771.3	+1	validated	p.V217A	0.568	162	0%	132	21.2%	1	0%	possibly_damaging(0.623)	deleterious(0.03)	deleterious(0.582)	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
CD22	933	genome.wustl.edu	37	19	35828871	35828871	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001771.3	+1	validated	p.V311A	0.002	145	0%	77	36.4%	2	0%	benign(0.012)	tolerated(1)	neutral(0.001)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
CD22	933	genome.wustl.edu	37	19	35837067	35837067	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001771.3	+1	validated	p.S781A	0.000	137	0%	148	25%	5	0%	benign(0.149)	-	-	NULL
FFAR3	2865	genome.wustl.edu	37	19	35850246	35850246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005304.3	+1	validated	p.V152I	0.000	292	0%	234	11.1%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
FFAR3	2865	genome.wustl.edu	37	19	35863263	35863263	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000246538	+1	known	p.G334	0.005	255	0%	157	13.4%	1	0%	-	-	-	NULL
KRTDAP	388533	genome.wustl.edu	37	19	35979354	35979354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207392.1	-1	provisional	p.A68T	0.963	54	0%	38	18.4%	0	-	possibly_damaging(0.915)	tolerated(0.21)	neutral(0.410)	NULL
GAPDHS	26330	genome.wustl.edu	37	19	36027807	36027807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014364.4	+1	reviewed	p.P54S	0.001	348	0%	394	20.3%	0	-	benign(0.051)	deleterious(0.03)	neutral(0.367)	NULL
ATP4A	495	genome.wustl.edu	37	19	36042363	36042363	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000704.2	-1	reviewed	p.Q957	1.000	132	0%	131	25.2%	0	-	-	-	-	HMMPfam_Cation_ATPase_C,superfamily_SSF81665
ATP4A	495	genome.wustl.edu	37	19	36050775	36050775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000704.2	-1	reviewed	p.R330W	1.000	42	0%	41	29.3%	0	-	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	HMMPfam_E1-E2_ATPase,superfamily_SSF81665
HAUS5	23354	genome.wustl.edu	37	19	36109810	36109810	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015302.1	+1	validated	p.L346	0.006	105	0%	93	22.6%	18	44.4%	-	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36211520	36211520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014727.1	+1	reviewed	p.P424H	1.000	56	0%	70	27.1%	1	100%	unknown(0)	deleterious(0)	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36212061	36212061	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014727.1	+1	reviewed	p.L604	0.997	114	0%	122	27%	3	66.6%	-	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36216638	36216638	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014727.1	+1	reviewed	p.C1268	1.000	70	0%	79	21.5%	16	31.2%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
MLL4	9757	genome.wustl.edu	37	19	36218102	36218102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014727.1	+1	reviewed	p.Y1350C	0.997	153	0%	149	19.5%	10	70%	probably_damaging(0.965)	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
MLL4	9757	genome.wustl.edu	37	19	36221739	36221739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014727.1	+1	reviewed	p.T1803I	1.000	86	0%	82	22%	20	45%	possibly_damaging(0.85)	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36223121	36223121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014727.1	+1	reviewed	p.P1891T	1.000	53	0%	53	24.5%	19	21%	probably_damaging(0.98)	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36229206	36229206	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014727.1	+1	reviewed	p.R2632	0.914	169	0%	127	26.8%	80	31.2%	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
MLL4	9757	genome.wustl.edu	37	19	36229330	36229330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014727.1	+1	reviewed	p.I2674V	1.000	156	0%	148	12.8%	56	16%	benign(0.023)	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
ENSG00000247203	0	genome.wustl.edu	37	19	36243329	36243329	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000501632	-1	novel	NULL	0.000	352	0%	437	20.8%	0	-	-	-	-	-
C19orf55	148137	genome.wustl.edu	37	19	36257685	36257685	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039887.1	+1	predicted	p.A262	0.021	107	0%	118	23.7%	4	25%	-	-	-	NULL
ARHGAP33	115703	genome.wustl.edu	37	19	36268503	36268503	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000221905	+1	known	p.L6R	0.003	69	0%	71	21.1%	0	-	possibly_damaging(0.88)	deleterious(0.03)	deleterious(0.708)	NULL
ARHGAP33	115703	genome.wustl.edu	37	19	36268516	36268516	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000221905	+1	known	p.L10	0.992	81	0%	82	25.6%	0	-	-	-	-	NULL
ARHGAP33	115703	genome.wustl.edu	37	19	36275990	36275990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052948.3	+1	reviewed	p.P568L	0.013	22	0%	15	40%	4	0%	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	NULL
NPHS1	4868	genome.wustl.edu	37	19	36317494	36317494	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004646.3	-1	reviewed	p.I1216	0.999	190	0%	115	20%	0	-	-	-	-	NULL
NPHS1	4868	genome.wustl.edu	37	19	36322394	36322394	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004646.3	-1	reviewed	p.E1099*	0.990	96	0%	64	25%	1	0%	-	-	-	NULL
NPHS1	4868	genome.wustl.edu	37	19	36340227	36340227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004646.3	-1	reviewed	p.D251N	0.316	26	0%	38	18.4%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
KIRREL2	84063	genome.wustl.edu	37	19	36357261	36357261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199180.2	+1	validated	p.P665H	1.000	347	0%	397	15.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
APLP1	333	genome.wustl.edu	37	19	36368659	36368659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001024807.1	+1	reviewed	p.L495S	0.899	257	0%	285	22.5%	6	16.6%	probably_damaging(1)	tolerated(0.45)	deleterious(0.512)	NULL
NFKBID	84807	genome.wustl.edu	37	19	36381486	36381486	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000340950	-1	known	p.P37	0.000	39	0%	34	35.3%	2	50%	-	-	-	NULL
NFKBID	84807	genome.wustl.edu	37	19	36386992	36386992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139239.1	-1	provisional	p.V166I	0.020	286	0%	225	24%	10	40%	benign(0.111)	tolerated(0.29)	neutral(0.038)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
C19orf46	163183	genome.wustl.edu	37	19	36497843	36497843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039876.1	-1	validated	p.L143I	0.463	34	0%	43	14%	37	27%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
C19orf46	163183	genome.wustl.edu	37	19	36499190	36499190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039876.1	-1	validated	p.P70S	0.027	85	1.2%	113	21.2%	23	30.4%	benign(0.195)	tolerated(0.61)	neutral(0.022)	NULL
WDR62	284403	genome.wustl.edu	37	19	36558757	36558757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083961.1	+1	validated	p.R243C	1.000	105	0%	124	21%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
WDR62	284403	genome.wustl.edu	37	19	36592208	36592208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083961.1	+1	validated	p.S987N	0.752	38	0%	21	28.6%	11	27.2%	benign(0.002)	tolerated(0.49)	neutral(0.011)	NULL
WDR62	284403	genome.wustl.edu	37	19	36593925	36593925	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083961.1	+1	validated	p.G1137	0.000	74	0%	85	11.8%	19	10.5%	-	-	-	NULL
ZNF565	147929	genome.wustl.edu	37	19	36673984	36673984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042474.1	-1	validated	p.T295N	0.015	190	0%	79	26.6%	3	33.3%	possibly_damaging(0.742)	deleterious(0.04)	deleterious(0.621)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF565	147929	genome.wustl.edu	37	19	36674274	36674274	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042474.1	-1	validated	p.K198	0.000	339	0%	151	21.2%	6	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP14	57677	genome.wustl.edu	37	19	36831921	36831921	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020917.1	-1	provisional	p.Q269	0.222	315	0%	182	26.9%	4	75%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP82	284406	genome.wustl.edu	37	19	36884306	36884306	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133466.2	-1	provisional	p.C312	0.981	329	0%	271	20.7%	2	0%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP82	284406	genome.wustl.edu	37	19	36884813	36884813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133466.2	-1	provisional	p.M143I	0.000	317	0%	217	23%	1	100%	benign(0)	tolerated(1)	-	NULL
ZNF566	84924	genome.wustl.edu	37	19	36939960	36939960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145343.1	-1	validated	p.E393D	1.000	298	0%	132	28.8%	3	66.6%	benign(0.03)	tolerated(0.06)	neutral(0.324)	superfamily_SSF57667
ZNF790	388536	genome.wustl.edu	37	19	37309644	37309644	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206894.2	-1	validated	p.Y534	0.015	305	0.3%	153	28.1%	8	37.5%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF568	374900	genome.wustl.edu	37	19	37441221	37441221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198539.2	+1	validated	p.P389L	0.999	245	0%	107	10.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_C2H2 and C2HC zinc fingers
ZNF420	147923	genome.wustl.edu	37	19	37618096	37618096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144689.3	+1	provisional	p.S68F	0.209	253	0.4%	80	20%	1	0%	benign(0.113)	tolerated(0.09)	neutral(0.305)	NULL
ZNF585A	199704	genome.wustl.edu	37	19	37643531	37643531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152655.2	-1	validated	p.H369Y	0.001	355	0%	185	13%	0	-	possibly_damaging(0.558)	tolerated(0.1)	deleterious(0.477)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF585A	199704	genome.wustl.edu	37	19	37646782	37646782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152655.2	-1	validated	p.R38C	0.000	566	0%	310	21.9%	1	0%	benign(0.164)	tolerated(0.06)	neutral(0.338)	NULL
ZNF585A	199704	genome.wustl.edu	37	19	37660753	37660753	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356958	-1	known	p.G20	0.000	79	0%	66	13.6%	20	15%	-	-	-	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
HKR1	284459	genome.wustl.edu	37	19	37853509	37853509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181786.2	+1	provisional	p.T271I	0.355	128	0%	75	33.3%	19	63.1%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
HKR1	284459	genome.wustl.edu	37	19	37854239	37854239	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181786.2	+1	provisional	p.T514	0.049	177	0%	125	13.6%	25	16%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF527	84503	genome.wustl.edu	37	19	37879674	37879674	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032453.1	+1	validated	p.P241	0.299	26	0%	19	26.3%	0	-	-	-	-	NULL
ZNF527	84503	genome.wustl.edu	37	19	37880020	37880020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032453.1	+1	validated	p.P357T	1.000	276	0%	119	26.9%	2	50%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	superfamily_C2H2 and C2HC zinc fingers
ZNF569	148266	genome.wustl.edu	37	19	37917256	37917256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152484.2	-1	validated	p.A14T	1.000	342	0%	103	19.4%	2	50%	possibly_damaging(0.647)	tolerated(0.37)	neutral(0.246)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF570	148268	genome.wustl.edu	37	19	37975629	37975629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144694.1	+1	provisional	p.L369I	0.947	318	0%	111	14.4%	4	25%	benign(0.143)	tolerated(0.35)	neutral(0.033)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF571	51276	genome.wustl.edu	37	19	38056227	38056227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016536.3	-1	validated	p.C368Y	1.000	121	0%	73	21.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF540	163255	genome.wustl.edu	37	19	38103529	38103529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152606.3	+1	validated	p.L450I	0.000	252	0%	123	17.1%	1	0%	possibly_damaging(0.637)	tolerated(0.39)	neutral(0.239)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF573	126231	genome.wustl.edu	37	19	38229627	38229627	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152360.3	-1	validated	p.G530	0.987	238	0%	132	18.2%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
WDR87	83889	genome.wustl.edu	37	19	38378528	38378528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031951.3	-1	provisional	p.A1889D	0.000	728	0.1%	371	18.6%	0	-	probably_damaging(0.977)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
WDR87	83889	genome.wustl.edu	37	19	38379386	38379386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031951.3	-1	provisional	p.A1603V	0.000	567	0%	323	27.2%	1	0%	probably_damaging(0.988)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
SIPA1L3	23094	genome.wustl.edu	37	19	38572736	38572736	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015073.1	+1	validated	p.S177	0.997	58	0%	22	31.8%	0	-	-	-	-	NULL
SPINT2	10653	genome.wustl.edu	37	19	38778554	38778554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021102.3	+1	reviewed	p.A106S	0.047	186	0.5%	135	23%	1080	48.9%	possibly_damaging(0.799)	tolerated(0.16)	neutral(0.360)	NULL
SPINT2	10653	genome.wustl.edu	37	19	38781203	38781203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021102.3	+1	reviewed	p.L194F	0.311	153	0%	140	21.4%	1039	43.5%	possibly_damaging(0.856)	tolerated(0.7)	neutral(0.333)	NULL
SPINT2	10653	genome.wustl.edu	37	19	38782601	38782601	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021102.3	+1	reviewed	p.S238	0.000	139	0%	112	20.5%	1112	48.2%	-	-	-	NULL
YIF1B	90522	genome.wustl.edu	37	19	38798088	38798088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039672.2	-1	validated	p.V257I	0.009	102	0%	99	18.2%	145	42%	benign(0.037)	tolerated(0.73)	neutral(0.004)	HMMPfam_YIF1
YIF1B	90522	genome.wustl.edu	37	19	38800253	38800253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039672.2	-1	validated	p.P30L	0.986	85	0%	64	21.9%	51	23.5%	benign(0.01)	deleterious(0.01)	neutral(0.406)	NULL
CATSPERG	57828	genome.wustl.edu	37	19	38855574	38855574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021185.4	+1	validated	p.S840I	0.936	325	0%	314	14.6%	0	-	probably_damaging(0.995)	tolerated(0.49)	neutral(0.468)	NULL
PSMD8	5714	genome.wustl.edu	37	19	38866844	38866844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002812.4	+1	reviewed	p.K135N	0.978	315	0%	328	20.7%	389	41.1%	benign(0.253)	tolerated(0.18)	neutral(0.082)	HMMPfam_SAC3_GANP
FAM98C	147965	genome.wustl.edu	37	19	38899499	38899499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174905.3	+1	validated	p.R343C	0.230	76	0%	95	13.7%	36	19.4%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
RASGRP4	115727	genome.wustl.edu	37	19	38901993	38901993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_170604.2	-1	reviewed	p.R570H	1.000	180	0%	186	22.6%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
RYR1	6261	genome.wustl.edu	37	19	38951219	38951219	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000540.2	+1	reviewed	p.V855	1.000	43	0%	45	28.9%	0	-	-	-	-	HMMPfam_RyR
RYR1	6261	genome.wustl.edu	37	19	38976711	38976711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000540.2	+1	reviewed	p.A1806T	1.000	18	0%	16	37.5%	0	-	benign(0.016)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	39013898	39013898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000540.2	+1	reviewed	p.E3463D	1.000	192	0%	171	21.6%	0	-	probably_damaging(0.992)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	39016131	39016131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000540.2	+1	reviewed	p.R3539C	1.000	34	0%	32	28.1%	0	-	probably_damaging(1)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	39057625	39057625	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000540.2	+1	reviewed	p.A4504	0.004	66	0%	102	28.4%	1	0%	-	-	-	HMMPfam_RR_TM4-6
MAP4K1	11184	genome.wustl.edu	37	19	39083961	39083961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007181.4	-1	validated	p.R786K	1.000	398	0%	278	15.5%	53	0%	possibly_damaging(0.94)	tolerated(0.35)	neutral(0.406)	HMMPfam_CNH,HMMSmart_CNH
MAP4K1	11184	genome.wustl.edu	37	19	39088202	39088202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007181.4	-1	validated	p.L568I	0.998	256	0%	173	10.4%	35	0%	possibly_damaging(0.942)	tolerated(0.63)	neutral(0.391)	HMMPfam_CNH,HMMSmart_CNH
EIF3K	27335	genome.wustl.edu	37	19	39116667	39116667	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013234.2	+1	validated	e4-1	1.000	207	0%	130	23.8%	1	0%	-	-	-	-
ACTN4	81	genome.wustl.edu	37	19	39207889	39207889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004924.3	+1	reviewed	p.T359M	1.000	164	0%	166	25.9%	343	39%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
ACTN4	81	genome.wustl.edu	37	19	39212264	39212264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004924.3	+1	reviewed	p.E460K	1.000	99	0%	112	26.8%	340	37.9%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
ACTN4	81	genome.wustl.edu	37	19	39214889	39214889	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004924.3	+1	reviewed	p.Q595	1.000	72	0%	75	24%	361	42.6%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
ACTN4	81	genome.wustl.edu	37	19	39215182	39215182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004924.3	+1	reviewed	p.P663S	1.000	51	0%	45	24.4%	261	40.2%	unknown(0)	tolerated(0.08)	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
CAPN12	147968	genome.wustl.edu	37	19	39232421	39232421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144691.3	-1	validated	p.A186T	1.000	133	0%	174	19%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
SIRT2	22933	genome.wustl.edu	37	19	39369944	39369944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012237.2	-1	reviewed	p.L341M	1.000	118	0%	89	23.6%	79	51.8%	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	superfamily_DHS-like NAD/FAD-binding domain
SIRT2	22933	genome.wustl.edu	37	19	39374341	39374341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012237.2	-1	reviewed	p.A186V	1.000	93	0%	107	20.6%	60	38.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain
NFKBIB	4793	genome.wustl.edu	37	19	39395889	39395889	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002503.3	+1	validated	p.E111	0.999	34	0%	31	19.4%	43	44.1%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NFKBIB	4793	genome.wustl.edu	37	19	39395910	39395910	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002503.3	+1	validated	p.A118	0.003	27	0%	19	31.6%	30	46.6%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SARS2	54938	genome.wustl.edu	37	19	39406322	39406322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017827.3	-1	reviewed	p.T494I	0.043	62	0%	76	23.7%	53	28.3%	possibly_damaging(0.806)	deleterious(0.02)	deleterious(0.686)	superfamily_SSF55681
NCCRP1	342897	genome.wustl.edu	37	19	39688694	39688694	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001414.1	+1	provisional	p.G113	1.000	143	0%	156	15.4%	0	-	-	-	-	HMMPfam_FBA,superfamily_Gal_bind_like
IL29	282618	genome.wustl.edu	37	19	39787085	39787085	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172140.1	+1	reviewed	p.V8	0.011	152	0%	106	14.2%	1	0%	-	-	-	NULL
SAMD4B	55095	genome.wustl.edu	37	19	39869158	39869158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018028.2	+1	provisional	p.L487M	1.000	256	0%	204	20.6%	36	33.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PLEKHG2	64857	genome.wustl.edu	37	19	39915404	39915404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022835.2	+1	validated	p.A1211T	0.018	130	0%	156	25.6%	36	38.8%	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	NULL
SUPT5H	6829	genome.wustl.edu	37	19	39949672	39949672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001111020.2	+1	validated	p.E139D	1.000	188	0%	93	22.6%	48	45.8%	benign(0.006)	tolerated(0.18)	neutral(0.056)	HMMPfam_Supt5
TIMM50	92609	genome.wustl.edu	37	19	39979213	39979213	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001563.1	+1	validated	p.T399	0.000	83	0%	98	17.3%	218	41.7%	-	-	-	HMMPfam_NIF,superfamily_SSF56784
LOC400696	400696	genome.wustl.edu	37	19	40172707	40172707	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207646.2	+1	validated	p.F54	0.000	296	0%	72	25%	15	26.6%	-	-	-	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
LGALS14	56891	genome.wustl.edu	37	19	40199918	40199918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203471.1	+1	reviewed	p.D158Y	0.085	276	0%	57	26.3%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
LEUTX	342900	genome.wustl.edu	37	19	40276669	40276669	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143832.1	+1	provisional	p.E134A	0.003	266	0%	126	25.4%	0	-	benign(0.224)	-	-	NULL
DYRK1B	9149	genome.wustl.edu	37	19	40316545	40316545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004714.1	-1	reviewed	p.S567N	1.000	9	0.000	10	0.400	84	27.3%	unknown(0)	deleterious(0)	-	NULL
FCGBP	8857	genome.wustl.edu	37	19	40366422	40366422	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003890.2	-1	validated	p.A4604	0.019	19	0%	17	41.2%	7	14.2%	-	-	-	HMMPfam_VWD,HMMSmart_VWD
FCGBP	8857	genome.wustl.edu	37	19	40382725	40382725	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003890.2	-1	validated	p.S3387	0.016	70	0%	44	25%	4	0%	-	-	-	HMMPfam_VWD,HMMSmart_VWD
FCGBP	8857	genome.wustl.edu	37	19	40402217	40402217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003890.2	-1	validated	p.A1728T	0.000	458	0%	513	8.4%	6	0%	unknown(0)	tolerated(0.26)	-	HMMPfam_VWD,HMMSmart_VWD
FCGBP	8857	genome.wustl.edu	37	19	40412104	40412104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003890.2	-1	validated	p.G1175D	1.000	32	0%	29	24.1%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_Cysrich_TIL,HMMPfam_TIL
FCGBP	8857	genome.wustl.edu	37	19	40433178	40433178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003890.2	-1	validated	p.T364M	0.005	115	0%	119	30.3%	2	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
PSMC4	5704	genome.wustl.edu	37	19	40478338	40478338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006503.2	+1	reviewed	p.K66N	1.000	250	0%	170	17.6%	151	44.3%	benign(0.058)	deleterious(0)	neutral(0.448)	NULL
PSMC4	5704	genome.wustl.edu	37	19	40480305	40480305	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006503.2	+1	reviewed	p.L143	1.000	33	0%	30	30%	270	47.7%	-	-	-	NULL
ZNF780B	163131	genome.wustl.edu	37	19	40540728	40540728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005851.2	-1	validated	p.R680C	0.003	296	0%	108	15.7%	6	100%	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF780B	163131	genome.wustl.edu	37	19	40541115	40541115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005851.2	-1	validated	p.H551N	0.370	272	0.4%	112	21.4%	3	33.3%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF780B	163131	genome.wustl.edu	37	19	40541792	40541792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005851.2	-1	validated	p.R325Q	0.000	540	0.2%	191	24.1%	2	50%	possibly_damaging(0.534)	tolerated(0.53)	neutral(0.188)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF780A	284323	genome.wustl.edu	37	19	40581261	40581261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142577.1	-1	validated	p.C364Y	0.759	402	0%	182	21.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF780A	284323	genome.wustl.edu	37	19	40581327	40581327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142577.1	-1	validated	p.A342V	0.539	381	0%	166	22.3%	1	0%	benign(0.253)	tolerated(0.07)	neutral(0.345)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF780A	284323	genome.wustl.edu	37	19	40582091	40582091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142577.1	-1	validated	p.E87D	0.003	255	0%	109	24.8%	8	12.5%	benign(0.003)	deleterious(0.04)	neutral(0.349)	NULL
MAP3K10	4294	genome.wustl.edu	37	19	40698469	40698469	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002446.3	+1	reviewed	p.A177	1.000	46	0%	53	22.6%	6	66.6%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
LOC100289661	100289661	genome.wustl.edu	37	19	40710446	40710446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343682.1	-1	model	p.D528N	1.000	38	0%	49	16.3%	14	14.2%	-	-	-	NULL
TTC9B	148014	genome.wustl.edu	37	19	40722126	40722126	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152479.5	-1	validated	p.S222R	0.999	153	0%	220	22.3%	1	100%	benign(0.303)	deleterious(0.03)	neutral(0.459)	NULL
C19orf47	126526	genome.wustl.edu	37	19	40829984	40829984	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178830.2	-1	predicted	e6-1	1.000	160	0%	181	24.9%	0	-	-	-	-	-
PLD3	23646	genome.wustl.edu	37	19	40872731	40872731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031696.2	+1	validated	p.A52S	1.000	67	0%	80	20%	254	27.1%	benign(0.008)	tolerated(0.3)	neutral(0.029)	NULL
HIPK4	147746	genome.wustl.edu	37	19	40885539	40885539	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144685.3	-1	provisional	p.P602	0.955	96	0%	62	30.6%	0	-	-	-	-	NULL
HIPK4	147746	genome.wustl.edu	37	19	40886336	40886336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144685.3	-1	provisional	p.S521N	0.263	58	0%	59	18.6%	0	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
HIPK4	147746	genome.wustl.edu	37	19	40889978	40889978	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144685.3	-1	provisional	p.S178	0.000	88	0%	81	17.3%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PRX	57716	genome.wustl.edu	37	19	40900185	40900185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181882.2	-1	reviewed	p.E1358D	0.010	25	0%	31	19.4%	3	33.3%	benign(0.001)	tolerated(0.62)	neutral(0.004)	NULL
PRX	57716	genome.wustl.edu	37	19	40902925	40902925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181882.2	-1	reviewed	p.P445H	0.956	54	0%	52	28.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPTBN4	57731	genome.wustl.edu	37	19	41034975	41034975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020971.2	+1	reviewed	p.Q1295H	0.988	179	0%	219	20.1%	0	-	possibly_damaging(0.598)	tolerated(0.12)	neutral(0.468)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
LTBP4	8425	genome.wustl.edu	37	19	41119864	41119864	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000308370	+1	known	p.I934S	0.128	33	0%	40	32.5%	13	7.6%	possibly_damaging(0.58)	tolerated(0.56)	neutral(0.206)	HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
LTBP4	8425	genome.wustl.edu	37	19	41133041	41133041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000308370	+1	known	p.D1449N	0.986	73	0%	90	23.3%	30	20%	possibly_damaging(0.596)	tolerated(0.48)	neutral(0.216)	NULL
RAB4B	53916	genome.wustl.edu	37	19	41292616	41292616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000378307	+1	known	p.G108R	0.960	99	0%	73	32.9%	68	23.5%	unknown(0)	-	-	NULL
EGLN2	112398	genome.wustl.edu	37	19	41312545	41312545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053046.2	+1	reviewed	p.C310Y	1.000	193	0%	159	27.7%	130	36.9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702
CYP2A7	1549	genome.wustl.edu	37	19	41383838	41383838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000764.2	-1	reviewed	p.L298I	0.968	232	0%	218	20.6%	0	-	benign(0.186)	tolerated(0.07)	neutral(0.337)	HMMPfam_p450,superfamily_Cytochrome_P450
ENSG00000198251	0	genome.wustl.edu	37	19	41415891	41415891	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000359667	-1	known	p.I81	1.000	222	0%	207	18.8%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2A7P1	1550	genome.wustl.edu	37	19	41531612	41531612	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000301171	-1	known	p.S181	1.000	387	0%	310	18.7%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2A13	1553	genome.wustl.edu	37	19	41596349	41596349	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000766.3	+1	reviewed	p.V178	0.995	618	0.2%	398	23.9%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
TGFB1	7040	genome.wustl.edu	37	19	41858702	41858702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000660.4	-1	reviewed	p.S83I	1.000	20	0%	18	38.9%	22	27.2%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_TGFb_propeptide
BCKDHA	593	genome.wustl.edu	37	19	41916596	41916596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000709.3	+1	reviewed	p.P55T	1.000	120	0%	105	11.4%	76	18.4%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
BCKDHA	593	genome.wustl.edu	37	19	41928579	41928579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000709.3	+1	reviewed	p.G300D	1.000	113	0%	101	21.8%	102	39.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1_dh,superfamily_SSF52518
BCKDHA	593	genome.wustl.edu	37	19	41928623	41928623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000709.3	+1	reviewed	p.R315W	1.000	63	0%	64	15.6%	113	48.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_E1_dh,superfamily_SSF52518
BCKDHA	593	genome.wustl.edu	37	19	41928898	41928898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000457836	+1	known	p.C334R	0.000	97	0%	75	10.7%	0	-	unknown(0)	-	-	HMMPfam_E1_dh,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
ENSG00000229113	0	genome.wustl.edu	37	19	42027819	42027819	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000439847	-1	known	p.T155	0.390	284	0%	388	24%	0	-	-	-	-	NULL
DMRTC2	63946	genome.wustl.edu	37	19	42351835	42351835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001040283.1	+1	validated	p.A86T	1.000	54	0%	51	15.7%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMSmart_SM00301
ARHGEF1	9138	genome.wustl.edu	37	19	42396804	42396804	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199002.1	+1	reviewed	p.T181	0.988	29	0%	23	21.7%	35	5.7%	-	-	-	HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam
ARHGEF1	9138	genome.wustl.edu	37	19	42402664	42402664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199002.1	+1	reviewed	p.R414W	1.000	34	0%	53	20.8%	60	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_DH-domain
ARHGEF1	9138	genome.wustl.edu	37	19	42406174	42406174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199002.1	+1	reviewed	p.E484K	1.000	137	0%	159	21.4%	85	20%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
ATP1A3	478	genome.wustl.edu	37	19	42482174	42482174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152296.3	-1	reviewed	p.K619N	1.000	256	0%	204	24.5%	3	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81665
GRIK5	2901	genome.wustl.edu	37	19	42507560	42507560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002088.3	-1	reviewed	p.C813Y	1.000	190	0%	203	23.6%	3	0%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_Lig_chan
GRIK5	2901	genome.wustl.edu	37	19	42557996	42557996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002088.3	-1	reviewed	p.S381Y	1.000	157	0%	119	26.1%	4	0%	possibly_damaging(0.491)	deleterious(0.01)	deleterious(0.569)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRIK5	2901	genome.wustl.edu	37	19	42563516	42563516	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002088.3	-1	reviewed	p.H224	1.000	441	0%	286	23.4%	1	0%	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
POU2F2	5452	genome.wustl.edu	37	19	42600325	42600325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002698.2	-1	validated	p.P175L	0.998	117	0%	76	14.5%	3	0%	benign(0.382)	deleterious(0)	deleterious(0.567)	NULL
POU2F2	5452	genome.wustl.edu	37	19	42603913	42603913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002698.2	-1	validated	p.P122S	1.000	166	0%	115	16.5%	1	0%	benign(0.003)	tolerated(0.5)	neutral(0.010)	NULL
POU2F2	5452	genome.wustl.edu	37	19	42626317	42626317	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002698.2	-1	validated	p.T49	1.000	278	0%	278	10.8%	0	-	-	-	-	NULL
ZNF526	116115	genome.wustl.edu	37	19	42729154	42729154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133444.1	+1	provisional	p.P200H	1.000	180	0%	211	23.7%	12	41.6%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF526	116115	genome.wustl.edu	37	19	42730017	42730017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133444.1	+1	provisional	p.R488C	1.000	36	0%	62	11.3%	12	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GSK3A	2931	genome.wustl.edu	37	19	42744142	42744142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019884.2	-1	validated	p.A146T	1.000	264	0%	350	12.6%	72	27.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
CIC	23152	genome.wustl.edu	37	19	42791056	42791056	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015125.3	+1	validated	p.A67	1.000	46	2.2%	64	18.8%	9	55.5%	-	-	-	NULL
CIC	23152	genome.wustl.edu	37	19	42791585	42791585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015125.3	+1	validated	p.G189E	1.000	112	0%	168	19%	15	60%	probably_damaging(0.996)	tolerated(0.49)	deleterious(0.472)	superfamily_HMG-box
CIC	23152	genome.wustl.edu	37	19	42793230	42793230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015125.3	+1	validated	p.Q374H	1.000	21	0%	30	16.7%	14	35.7%	possibly_damaging(0.519)	deleterious(0.03)	deleterious(0.539)	NULL
PRR19	284338	genome.wustl.edu	37	19	42813940	42813940	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199285.2	+1	validated	p.R68	0.998	63	0%	68	13.2%	7	14.2%	-	-	-	NULL
PRR19	284338	genome.wustl.edu	37	19	42814476	42814476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199285.2	+1	validated	p.P219T	0.001	174	0%	136	19.1%	3	100%	benign(0.092)	deleterious(0)	neutral(0.452)	NULL
MEGF8	1954	genome.wustl.edu	37	19	42830410	42830410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001410.2	+1	validated	p.K5N	0.188	59	0%	53	17%	0	-	unknown(0)	-	-	NULL
MEGF8	1954	genome.wustl.edu	37	19	42852466	42852466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000251268	+1	known	p.A714T	0.986	165	0%	175	20.6%	2	0%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
MEGF8	1954	genome.wustl.edu	37	19	42855830	42855830	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001410.2	+1	validated	p.C939	0.002	33	3%	41	22%	4	0%	-	-	-	HMMPfam_PSI,HMMSmart_PSI
MEGF8	1954	genome.wustl.edu	37	19	42857079	42857079	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001410.2	+1	validated	e19-1	1.000	48	0%	63	23.8%	0	-	-	-	-	-
MEGF8	1954	genome.wustl.edu	37	19	42860493	42860493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001410.2	+1	validated	p.A1437T	1.000	77	0%	71	22.5%	2	50%	probably_damaging(0.998)	tolerated(0.34)	deleterious(0.497)	NULL
CEACAM8	1088	genome.wustl.edu	37	19	43093807	43093807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001816.3	-1	validated	p.P169S	0.007	433	0.5%	217	18%	0	-	benign(0.074)	tolerated(0.32)	neutral(0.029)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
TEX101	83639	genome.wustl.edu	37	19	43920136	43920136	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031451.4	+1	validated	e2+1	0.323	261	0%	205	27.8%	0	-	-	-	-	-
SRRM5	100170229	genome.wustl.edu	37	19	44118031	44118031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145641.1	+1	validated	p.S586R	0.000	368	0.3%	359	27.9%	1	100%	possibly_damaging(0.923)	tolerated(0.46)	neutral(0.385)	NULL
CADM4	199731	genome.wustl.edu	37	19	44130357	44130357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145296.1	-1	validated	p.G195C	0.982	167	0%	174	14.9%	36	19.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_IG,HMMPfam_C2-set_2,superfamily_SSF48726
PLAUR	5329	genome.wustl.edu	37	19	44160710	44160710	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002659.2	-1	reviewed	p.R131	0.875	196	0%	104	22.1%	114	38.5%	-	-	-	HMMSmart_SM00134,PatternScan_LY6_UPAR,superfamily_Snake toxin-like
PLAUR	5329	genome.wustl.edu	37	19	44160752	44160752	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002659.2	-1	reviewed	p.C117	0.003	186	0%	123	16.3%	110	34.5%	-	-	-	HMMSmart_SM00134,PatternScan_LY6_UPAR,superfamily_Snake toxin-like
PLAUR	5329	genome.wustl.edu	37	19	44169526	44169526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002659.2	-1	reviewed	p.K84N	0.756	241	0.4%	148	12.8%	123	26%	benign(0.111)	tolerated(0.11)	neutral(0.280)	HMMPfam_UPAR_LY6,HMMSmart_SM00134,superfamily_Snake toxin-like
SMG9	56006	genome.wustl.edu	37	19	44251960	44251960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019108.2	-1	validated	p.E105D	0.983	99	0%	161	18.6%	14	21.4%	benign(0.001)	tolerated(0.28)	neutral(0.032)	NULL
KCNN4	3783	genome.wustl.edu	37	19	44273618	44273618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002250.2	-1	reviewed	p.R342H	1.000	70	0%	66	19.7%	47	27.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CaMBD,superfamily_Small-conductance potassium channel
ZNF283	284349	genome.wustl.edu	37	19	44351529	44351529	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000421176	+1	known	e4+1	1.000	167	0%	146	23.3%	3	33.3%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	-
ZNF404	342908	genome.wustl.edu	37	19	44377065	44377065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033719.2	-1	validated	p.A434D	0.997	248	0.4%	204	23.5%	0	-	possibly_damaging(0.897)	deleterious(0.01)	deleterious(0.760)	superfamily_C2H2 and C2HC zinc fingers
ZNF404	342908	genome.wustl.edu	37	19	44377194	44377194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033719.2	-1	validated	p.T391I	0.329	169	0%	96	21.9%	2	0%	probably_damaging(0.958)	tolerated(0.06)	deleterious(0.724)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF222	7673	genome.wustl.edu	37	19	44531573	44531573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001129996.1	+1	validated	p.T65A	0.005	468	0%	231	23.8%	0	-	benign(0.001)	tolerated(0.94)	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF284	342909	genome.wustl.edu	37	19	44585193	44585193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037813.2	+1	provisional	p.A14V	0.756	1172	0.1%	695	19.7%	2	0%	probably_damaging(0.981)	tolerated(0.26)	neutral(0.460)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF234	10780	genome.wustl.edu	37	19	44660945	44660945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144824.1	+1	validated	p.P259H	0.747	422	0%	142	27.5%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_C2H2 and C2HC zinc fingers
ZNF226	7769	genome.wustl.edu	37	19	44680552	44680552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001032372.1	+1	validated	p.Q379H	0.001	246	0%	118	18.6%	5	20%	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF226	7769	genome.wustl.edu	37	19	44680956	44680956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001032372.1	+1	validated	p.R514M	0.000	284	0%	138	21.7%	9	44.4%	benign(0.092)	tolerated(0.26)	neutral(0.041)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF227	7770	genome.wustl.edu	37	19	44740280	44740280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182490.1	+1	provisional	p.H566R	1.000	308	0%	153	13.7%	15	40%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF233	353355	genome.wustl.edu	37	19	44777752	44777752	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181756.1	+1	provisional	p.C313	0.000	234	0%	69	15.9%	1	0%	-	-	-	NULL
ZNF233	353355	genome.wustl.edu	37	19	44778702	44778702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181756.1	+1	provisional	p.S630I	0.029	411	0%	132	19.7%	2	0%	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP112	7771	genome.wustl.edu	37	19	44831975	44831975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083335.1	-1	validated	p.G785S	0.986	566	0%	156	30.8%	0	-	probably_damaging(1)	tolerated(0.27)	deleterious(0.533)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF285	26974	genome.wustl.edu	37	19	44891430	44891430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152354.3	-1	validated	p.R326K	0.000	304	0%	118	15.3%	0	-	possibly_damaging(0.755)	tolerated(0.52)	neutral(0.287)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF229	7772	genome.wustl.edu	37	19	44933497	44933497	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014518.2	-1	validated	p.R487W	1.000	133	0%	67	26.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_C2H2 and C2HC zinc fingers
CEACAM19	56971	genome.wustl.edu	37	19	45176069	45176069	+	Missense_Mutation	SNP	G	G	A	rs188022827	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020219.3	+1	validated	p.R86Q	0.169	140	0%	54	14.8%	2	50%	probably_damaging(0.976)	tolerated(0.41)	neutral(0.433)	superfamily_Immunoglobulin
CEACAM16	388551	genome.wustl.edu	37	19	45202625	45202625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039213.2	+1	validated	p.L26M	0.060	462	0%	400	26.5%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
BCL3	602	genome.wustl.edu	37	19	45260630	45260630	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000444487	+1	known	p.R141C	0.324	14	0%	11	54.5%	96	34.3%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
BCAM	4059	genome.wustl.edu	37	19	45315591	45315591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005581.3	+1	reviewed	p.V126M	0.983	27	0%	40	27.5%	198	40.9%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
BCAM	4059	genome.wustl.edu	37	19	45322708	45322708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005581.3	+1	reviewed	p.P527S	1.000	83	0%	68	20.6%	632	48.2%	benign(0.136)	tolerated(0.89)	neutral(0.011)	HMMSmart_IG,HMMPfam_C2-set_2,superfamily_SSF48726
PVRL2	5819	genome.wustl.edu	37	19	45389193	45389193	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042724.1	+1	reviewed	e7-1	1.000	173	0%	201	19.4%	2	50%	-	-	-	-
PVRL2	5819	genome.wustl.edu	37	19	45391390	45391390	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042724.1	+1	reviewed	p.L457	1.000	119	0%	72	22.2%	84	52.3%	-	-	-	NULL
CLPTM1	1209	genome.wustl.edu	37	19	45490627	45490627	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001294.1	+1	provisional	p.N328	1.000	130	0%	80	12.5%	129	38.7%	-	-	-	HMMPfam_CLPTM1
RELB	5971	genome.wustl.edu	37	19	45525373	45525373	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006509.2	+1	validated	p.W189*	1.000	34	0%	52	9.6%	27	0%	-	-	-	superfamily_P53_like_DNA_bnd,HMMPfam_RHD
RELB	5971	genome.wustl.edu	37	19	45535834	45535834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006509.2	+1	validated	p.R345Q	1.000	73	0%	80	22.5%	68	29.4%	possibly_damaging(0.842)	tolerated(0.24)	neutral(0.359)	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
CLASRP	11129	genome.wustl.edu	37	19	45572330	45572330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007056.2	+1	validated	p.A592V	1.000	227	0%	220	15.9%	49	28.5%	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	NULL
CLASRP	11129	genome.wustl.edu	37	19	45573358	45573358	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007056.2	+1	validated	p.R651	0.103	74	0%	91	19.8%	38	7.8%	-	-	-	NULL
ZNF296	162979	genome.wustl.edu	37	19	45575821	45575821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145288.1	-1	provisional	p.A156S	0.000	54	0%	75	12%	7	14.2%	benign(0.02)	deleterious(0.05)	neutral(0.346)	NULL
MARK4	57787	genome.wustl.edu	37	19	45781813	45781813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031417.2	+1	provisional	p.G316C	0.982	235	0%	224	22.3%	30	36.6%	possibly_damaging(0.945)	tolerated(0.06)	deleterious(0.712)	NULL
PPP1R13L	10848	genome.wustl.edu	37	19	45895347	45895347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142502.1	-1	validated	p.P536S	0.987	44	0%	43	27.9%	23	34.7%	unknown(0)	tolerated(0.21)	-	NULL
ERCC1	2067	genome.wustl.edu	37	19	45920144	45920144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_202001.2	-1	reviewed	p.Q179H	1.000	117	0%	116	24.1%	95	37.8%	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
ERCC1	2067	genome.wustl.edu	37	19	45923657	45923657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_202001.2	-1	reviewed	p.R117H	0.999	94	0%	105	14.3%	109	13.7%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Rad10
EML2	24139	genome.wustl.edu	37	19	46129985	46129985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012155.1	-1	provisional	p.S240N	1.000	189	0%	170	22.9%	18	27.7%	benign(0.024)	tolerated(0.27)	neutral(0.035)	HMMSmart_WD40,superfamily_WD40_like
SNRPD2	6633	genome.wustl.edu	37	19	46191768	46191768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004597.5	-1	reviewed	p.E20G	1.000	530	0%	511	23.3%	816	43.5%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
QPCTL	54814	genome.wustl.edu	37	19	46205166	46205166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017659.3	+1	validated	p.R333C	0.994	64	0%	63	23.8%	61	39.3%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Peptidase_M28,superfamily_SSF53187
SIX5	147912	genome.wustl.edu	37	19	46268794	46268794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175875.4	-1	reviewed	p.Q729K	1.000	38	0%	53	11.3%	30	3.3%	possibly_damaging(0.763)	deleterious(0)	deleterious(0.728)	NULL
SYMPK	8189	genome.wustl.edu	37	19	46329613	46329613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004819.2	-1	reviewed	p.L734M	0.996	231	0%	218	20.6%	92	46.7%	possibly_damaging(0.512)	tolerated(0.1)	neutral(0.458)	superfamily_ARM repeat
SYMPK	8189	genome.wustl.edu	37	19	46332268	46332268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004819.2	-1	reviewed	p.L649M	1.000	53	0%	59	30.5%	75	40%	benign(0.391)	tolerated(0.11)	neutral(0.397)	superfamily_ARM repeat
SYMPK	8189	genome.wustl.edu	37	19	46345544	46345544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004819.2	-1	reviewed	p.D351N	0.987	69	0%	61	13.1%	39	2.5%	benign(0.133)	tolerated(0.51)	neutral(0.020)	superfamily_ARM repeat
SYMPK	8189	genome.wustl.edu	37	19	46345660	46345660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004819.2	-1	reviewed	p.P312L	1.000	69	0%	73	30.1%	50	32%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
SYMPK	8189	genome.wustl.edu	37	19	46357676	46357676	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004819.2	-1	reviewed	p.G26	0.998	138	0%	114	23.7%	37	35.1%	-	-	-	superfamily_ARM repeat
IRF2BP1	26145	genome.wustl.edu	37	19	46388052	46388052	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015649.1	-1	provisional	p.W327*	1.000	17	0%	19	36.8%	32	31.2%	-	-	-	NULL
PGLYRP1	8993	genome.wustl.edu	37	19	46522896	46522896	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005091.2	-1	validated	p.I99	0.947	82	0%	100	21%	0	-	-	-	-	HMMPfam_Amidase_2,HMMSmart_Ami_2,superfamily_Amidase_2,HMMSmart_PGRP
HIF3A	64344	genome.wustl.edu	37	19	46812612	46812612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152795.2	+1	reviewed	p.D256N	1.000	18	0%	30	26.7%	0	-	benign(0.398)	tolerated(0.11)	neutral(0.400)	HMMSmart_SM00091,HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain)
PNMAL2	57469	genome.wustl.edu	37	19	46997372	46997372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020709.1	-1	validated	p.L451M	0.931	114	0%	116	23.3%	0	-	-	-	-	NULL
CALM3	808	genome.wustl.edu	37	19	47112210	47112210	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005184.2	+1	validated	p.I131	0.990	183	0%	159	31.4%	718	38.8%	-	-	-	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
FKRP	79147	genome.wustl.edu	37	19	47258824	47258824	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039885.2	+1	reviewed	p.P39	0.833	25	0%	17	23.5%	9	33.3%	-	-	-	NULL
SLC1A5	6510	genome.wustl.edu	37	19	47280577	47280577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005628.2	-1	validated	p.G382S	1.000	26	0%	44	50%	236	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_2
ARHGAP35	2909	genome.wustl.edu	37	19	47425131	47425131	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004491.4	+1	reviewed	p.Q1067*	0.992	123	0%	62	11.3%	3	0%	-	-	-	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47425247	47425247	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004491.4	+1	reviewed	p.Y1105	1.000	141	0%	61	26.2%	11	9%	-	-	-	NULL
BBC3	27113	genome.wustl.edu	37	19	47725059	47725059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127240.1	-1	validated	p.G229C	1.000	63	0%	64	26.6%	34	50%	-	-	-	NULL
CCDC9	26093	genome.wustl.edu	37	19	47774701	47774701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015603.2	+1	validated	p.E454D	0.197	237	0%	226	14.6%	40	20%	unknown(0)	deleterious(0)	-	NULL
MEIS3	56917	genome.wustl.edu	37	19	47910210	47910210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020160.1	-1	validated	p.S384I	1.000	98	0%	96	15.6%	6	0%	possibly_damaging(0.805)	deleterious(0.05)	deleterious(0.648)	superfamily_Homeodomain-like
MEIS3	56917	genome.wustl.edu	37	19	47920586	47920586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020160.1	-1	validated	p.P12T	1.000	87	0%	70	12.9%	2	0%	benign(0.058)	tolerated(0.17)	neutral(0.062)	NULL
ENSG00000245602	0	genome.wustl.edu	37	19	47998638	47998638	+	RNA	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000500835	+1	known	NULL	0.157	20	0%	12	33.3%	0	-	-	-	-	-
GLTSCR1	29998	genome.wustl.edu	37	19	48197734	48197734	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015711.3	+1	provisional	p.S882	0.274	20	0%	66	19.7%	0	-	-	-	-	NULL
GLTSCR1	29998	genome.wustl.edu	37	19	48202268	48202268	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015711.3	+1	provisional	p.T1148	1.000	104	0%	128	23.4%	14	21.4%	-	-	-	NULL
GLTSCR2	29997	genome.wustl.edu	37	19	48259945	48259945	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015710.4	+1	validated	p.K458	1.000	126	0%	133	21.1%	550	34.9%	-	-	-	NULL
SULT2A1	6822	genome.wustl.edu	37	19	48386910	48386910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003167.3	-1	reviewed	p.T90M	0.000	325	0%	125	23.2%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF114	163071	genome.wustl.edu	37	19	48789111	48789111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153608.1	+1	provisional	p.T77M	0.000	159	0.6%	120	27.5%	0	-	possibly_damaging(0.897)	tolerated(0.18)	neutral(0.410)	NULL
ZNF114	163071	genome.wustl.edu	37	19	48789682	48789682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153608.1	+1	provisional	p.M267I	0.001	123	0%	119	25.2%	0	-	possibly_damaging(0.686)	tolerated(0.11)	deleterious(0.516)	NULL
CCDC114	93233	genome.wustl.edu	37	19	48800591	48800591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144577.3	-1	validated	p.R552I	0.001	36	0%	32	15.6%	4	25%	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	NULL
SYNGR4	23546	genome.wustl.edu	37	19	48869120	48869120	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012451.2	+1	reviewed	p.L7	0.998	81	0%	87	11.5%	1	0%	-	-	-	NULL
GRIN2D	2906	genome.wustl.edu	37	19	48917266	48917266	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000836.2	+1	reviewed	p.T368	0.969	179	0%	177	29.9%	1	0%	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIN2D	2906	genome.wustl.edu	37	19	48917278	48917278	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000836.2	+1	reviewed	p.R372	0.997	193	0%	173	12.7%	1	100%	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
CYTH2	9266	genome.wustl.edu	37	19	48981759	48981759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017457.4	+1	reviewed	p.A342V	0.999	92	0%	81	18.5%	114	42.1%	benign(0.115)	deleterious(0.03)	neutral(0.373)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
LMTK3	114783	genome.wustl.edu	37	19	49005769	49005769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080434.1	-1	provisional	p.D268Y	1.000	23	0%	32	25%	0	-	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
LMTK3	114783	genome.wustl.edu	37	19	49012201	49012201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080434.1	-1	provisional	p.D184G	1.000	49	0%	62	29%	1	0%	benign(0.047)	tolerated(0.43)	neutral(0.017)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP
LMTK3	114783	genome.wustl.edu	37	19	49013838	49013838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080434.1	-1	provisional	p.L59M	1.000	139	0%	117	21.4%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
MAMSTR	284358	genome.wustl.edu	37	19	49218963	49218963	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130915.1	-1	validated	p.S53	0.002	113	0%	115	21.7%	0	-	-	-	-	NULL
RASIP1	54922	genome.wustl.edu	37	19	49228045	49228045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017805.2	-1	validated	p.L767P	1.000	183	0%	147	21.1%	6	16.6%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
IZUMO1	284359	genome.wustl.edu	37	19	49245511	49245511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182575.2	-1	validated	p.N185K	0.039	264	0%	372	21.2%	0	-	benign(0.271)	tolerated(0.06)	neutral(0.352)	superfamily_Immunoglobulin
FGF21	26291	genome.wustl.edu	37	19	49259658	49259658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019113.2	+1	reviewed	p.Q55H	0.809	68	0%	79	27.8%	0	-	benign(0.156)	tolerated(0.59)	neutral(0.018)	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like
BCAT2	587	genome.wustl.edu	37	19	49303312	49303312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001190.3	-1	reviewed	p.E153K	0.999	48	0%	40	20%	76	46%	benign(0.002)	tolerated(0.96)	-	HMMPfam_Aminotran_4,superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes
PLEKHA4	57664	genome.wustl.edu	37	19	49348778	49348778	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020904.2	-1	validated	p.H554	0.005	144	0%	121	28.1%	58	32.7%	-	-	-	NULL
TULP2	7288	genome.wustl.edu	37	19	49385368	49385368	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003323.2	-1	validated	p.N456	0.014	232	0%	180	22.8%	0	-	-	-	-	HMMPfam_Tub,superfamily_Tubby_C
TULP2	7288	genome.wustl.edu	37	19	49399780	49399780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003323.2	-1	validated	p.R40C	1.000	64	0%	68	10.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BAX	581	genome.wustl.edu	37	19	49464242	49464242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004324.3	+1	reviewed	p.P182L	0.014	17	0%	16	31.2%	31	64.5%	unknown(0)	deleterious(0)	-	NULL
GYS1	2997	genome.wustl.edu	37	19	49472604	49472604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002103.4	-1	reviewed	p.L719I	0.004	20	0%	17	23.5%	48	52%	unknown(0)	tolerated(0.15)	-	NULL
RUVBL2	10856	genome.wustl.edu	37	19	49507654	49507654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006666.1	+1	reviewed	p.G82W	0.995	54	0%	43	30.2%	182	44.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
RUVBL2	10856	genome.wustl.edu	37	19	49518862	49518862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006666.1	+1	reviewed	p.V429I	1.000	88	0%	108	23.1%	536	48.6%	possibly_damaging(0.851)	tolerated(0.13)	deleterious(0.580)	HMMPfam_TIP49,superfamily_SSF52540
HRC	3270	genome.wustl.edu	37	19	49656860	49656860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002152.2	-1	reviewed	p.E545D	0.877	155	0%	169	25.4%	1	0%	benign(0.142)	tolerated(0.64)	neutral(0.015)	NULL
HRC	3270	genome.wustl.edu	37	19	49657503	49657503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002152.2	-1	reviewed	p.A331D	0.001	707	0%	643	20.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Hist_rich_Ca-bd
HRC	3270	genome.wustl.edu	37	19	49657752	49657754	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	TCG	TCG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002152.2	-1	reviewed	p.D251in_frame_del	0.912:0.905:0.003	-	-	-	-	-	-	-	-	-	HMMPfam_Hist_rich_Ca-bd
TRPM4	54795	genome.wustl.edu	37	19	49674973	49674973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017636.2	+1	provisional	p.D333Y	0.664	44	0%	44	20.5%	13	53.8%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
TRPM4	54795	genome.wustl.edu	37	19	49705363	49705363	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017636.2	+1	provisional	p.N1032	1.000	172	0%	153	26.1%	58	39.6%	-	-	-	HMMPfam_Ion_trans
SLC6A16	28968	genome.wustl.edu	37	19	49797169	49797169	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014037.2	-1	validated	p.S511	0.002	506	0%	250	11.6%	2	50%	-	-	-	HMMPfam_SNF
CCDC155	147872	genome.wustl.edu	37	19	49900948	49900948	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144688.4	+1	validated	p.F147	0.999	158	1.3%	132	21.2%	0	-	-	-	-	NULL
SLC17A7	57030	genome.wustl.edu	37	19	49934015	49934015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020309.3	-1	reviewed	p.G482C	0.999	70	0%	64	29.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MFS_gen_substrate_transporter
ALDH16A1	126133	genome.wustl.edu	37	19	49967185	49967185	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153329.3	+1	reviewed	p.A391	0.139	273	0%	292	23.6%	52	42.3%	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
FLT3LG	2323	genome.wustl.edu	37	19	49979420	49979420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001459.2	+1	validated	p.D55Y	0.925	154	0%	174	12.6%	23	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Flt3_lig,superfamily_4-helical cytokines
FLT3LG	2323	genome.wustl.edu	37	19	49983704	49983704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001459.2	+1	validated	p.R211W	0.000	66	0%	29	31%	7	14.2%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
PRR12	57479	genome.wustl.edu	37	19	50102762	50102762	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020719.1	+1	validated	p.T1304	0.642	26	0%	29	20.7%	39	35.8%	-	-	-	NULL
SCAF1	58506	genome.wustl.edu	37	19	50150073	50150073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021228.2	+1	validated	p.R155K	1.000	30	0%	34	20.6%	45	46.6%	unknown(0)	deleterious(0)	-	NULL
SCAF1	58506	genome.wustl.edu	37	19	50155870	50155870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021228.2	+1	validated	p.R742W	0.550	8	0.000	13	0.308	44	29.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SCAF1	58506	genome.wustl.edu	37	19	50156464	50156464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021228.2	+1	validated	p.V940M	0.061	30	0%	45	20%	86	34.8%	probably_damaging(0.964)	tolerated(0.06)	deleterious(0.729)	NULL
CPT1C	126129	genome.wustl.edu	37	19	50200582	50200582	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152359.1	+1	provisional	e2-1	1.000	296	0%	297	18.5%	0	-	-	-	-	-
CPT1C	126129	genome.wustl.edu	37	19	50200597	50200597	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152359.1	+1	provisional	p.T52	0.002	326	0%	324	25.9%	0	-	-	-	-	NULL
CPT1C	126129	genome.wustl.edu	37	19	50204610	50204610	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152359.1	+1	provisional	p.L164	1.000	46	0%	52	30.8%	0	-	-	-	-	NULL
CPT1C	126129	genome.wustl.edu	37	19	50214039	50214039	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152359.1	+1	provisional	p.G597	1.000	64	0%	69	29%	1	0%	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
TSKS	60385	genome.wustl.edu	37	19	50245180	50245180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021733.1	-1	reviewed	p.A487T	1.000	224	0%	202	21.3%	2	0%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
MED25	81857	genome.wustl.edu	37	19	50322505	50322505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030973.3	+1	reviewed	p.A86D	1.000	131	0%	182	19.8%	72	40.2%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
MED25	81857	genome.wustl.edu	37	19	50331769	50331769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030973.3	+1	reviewed	p.Q123H	1.000	57	0%	77	18.2%	96	53.1%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
MED25	81857	genome.wustl.edu	37	19	50333449	50333449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030973.3	+1	reviewed	p.L265M	0.985	71	1.4%	81	35.8%	55	58.1%	possibly_damaging(0.701)	tolerated(0.1)	deleterious(0.538)	NULL
MED25	81857	genome.wustl.edu	37	19	50338308	50338308	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030973.3	+1	reviewed	p.S516	0.975	129	0%	126	15.9%	195	32.8%	-	-	-	NULL
MED25	81857	genome.wustl.edu	37	19	50340138	50340138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000377077	+1	known	p.G717S	0.995	31	0%	33	36.4%	39	30.7%	unknown(0)	deleterious(0.04)	-	NULL
PTOV1	53635	genome.wustl.edu	37	19	50360309	50360309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017432.3	+1	provisional	p.K212N	1.000	126	0%	158	23.4%	430	42%	possibly_damaging(0.749)	tolerated(0.17)	neutral(0.334)	NULL
IL4I1	259307	genome.wustl.edu	37	19	50394310	50394310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172374.1	-1	reviewed	p.D253N	1.000	43	0%	49	14.3%	86	30.2%	probably_damaging(0.965)	deleterious(0.04)	deleterious(0.756)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
ATF5	22809	genome.wustl.edu	37	19	50435679	50435679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012068.4	+1	validated	p.G60D	1.000	226	0%	220	17.3%	92	32.6%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	NULL
VRK3	51231	genome.wustl.edu	37	19	50496210	50496210	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016440.3	-1	reviewed	e8-1	1.000	209	0%	133	27.1%	3	100%	-	-	-	-
LOC100287477	100287477	genome.wustl.edu	37	19	50562949	50562949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343656.1	-1	model	p.T237M	0.142	51	0%	35	20%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
IZUMO2	126123	genome.wustl.edu	37	19	50657873	50657873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152358.2	-1	validated	p.V203M	0.003	273	0%	198	15.2%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
MYH14	79784	genome.wustl.edu	37	19	50726365	50726365	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077186.1	+1	reviewed	p.C196	1.000	330	0%	328	19.2%	3	100%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH14	79784	genome.wustl.edu	37	19	50762515	50762515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077186.1	+1	reviewed	p.R750W	1.000	57	0%	30	20%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH14	79784	genome.wustl.edu	37	19	50770176	50770176	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077186.1	+1	reviewed	p.Q880*	1.000	53	0%	38	10.5%	13	7.6%	-	-	-	NULL
MYH14	79784	genome.wustl.edu	37	19	50780040	50780040	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077186.1	+1	reviewed	p.E1203A	0.999	49	0%	36	30.6%	11	9%	benign(0.125)	tolerated(0.7)	neutral(0.013)	HMMPfam_Myosin_tail_1
POLD1	5424	genome.wustl.edu	37	19	50911984	50911984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000391817	+1	known	p.A599V	0.000	41	0%	47	21.3%	0	-	-	-	-	HMMSmart_SM00486,superfamily_DNA/RNA polymerases
POLD1	5424	genome.wustl.edu	37	19	50912058	50912058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002691.2	+1	validated	p.I598V	1.000	85	0%	136	21.3%	93	54.8%	benign(0.17)	tolerated(0.13)	neutral(0.268)	HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_SSF56672
POLD1	5424	genome.wustl.edu	37	19	50918151	50918151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002691.2	+1	validated	p.R823H	1.000	35	2.9%	48	16.7%	130	41.5%	benign(0.007)	deleterious(0.03)	neutral(0.364)	HMMPfam_DNA_pol_B,superfamily_SSF56672
MYBPC2	4606	genome.wustl.edu	37	19	50944179	50944179	+	Silent	SNP	C	C	T	rs190315215	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004533.3	+1	validated	p.D205	0.064	73	0%	59	28.8%	14	78.5%	-	-	-	NULL
MYBPC2	4606	genome.wustl.edu	37	19	50958853	50958853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004533.3	+1	validated	p.G764R	1.000	207	1%	237	22.8%	59	20.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
C19orf63	284361	genome.wustl.edu	37	19	50983901	50983901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_206538.2	+1	validated	p.V156M	0.998	28	0%	26	30.8%	290	18.6%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
LRRC4B	94030	genome.wustl.edu	37	19	51022264	51022264	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080457.1	-1	provisional	p.L236	1.000	65	0%	81	21%	3	0%	-	-	-	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
SHANK1	50944	genome.wustl.edu	37	19	51165264	51165264	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016148.2	-1	validated	p.R2148	0.998	46	0%	39	28.2%	5	60%	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
SHANK1	50944	genome.wustl.edu	37	19	51170479	51170479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016148.2	-1	validated	p.P1580S	0.817	26	0%	122	39.3%	1	100%	unknown(0)	deleterious(0)	-	NULL
SHANK1	50944	genome.wustl.edu	37	19	51172416	51172416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016148.2	-1	validated	p.S934N	0.980	166	0%	137	21.2%	0	-	possibly_damaging(0.873)	tolerated(0.38)	neutral(0.357)	NULL
SHANK1	50944	genome.wustl.edu	37	19	51220104	51220104	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016148.2	-1	validated	p.E25*	1.000	23	0%	14	28.6%	0	-	-	-	-	NULL
ACPT	93650	genome.wustl.edu	37	19	51297058	51297058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033068.2	+1	reviewed	p.A255T	1.000	90	0%	80	17.5%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like
C19orf48	84798	genome.wustl.edu	37	19	51301652	51301652	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199249.1	-1	validated	p.L18	0.006	54	0%	38	26.3%	352	41.1%	-	-	-	NULL
KLK1	3816	genome.wustl.edu	37	19	51323185	51323185	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002257.2	-1	reviewed	p.G201	0.048	183	0%	152	27.6%	2	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK3	354	genome.wustl.edu	37	19	51363286	51363286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001648.2	+1	reviewed	p.G230D	0.908	557	0%	297	21.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK5	25818	genome.wustl.edu	37	19	51452125	51452125	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077491.1	-1	reviewed	p.K194	0.009	326	0%	186	24.7%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK11	11012	genome.wustl.edu	37	19	51527528	51527528	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144947.1	-1	reviewed	p.K111T	0.000	303	0%	296	26.7%	137	45.9%	benign(0.148)	tolerated(0.13)	neutral(0.266)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
SIGLEC9	27180	genome.wustl.edu	37	19	51631744	51631744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014441.1	+1	provisional	p.A394T	0.000	239	0%	166	18.1%	7	0%	benign(0.009)	tolerated(0.06)	neutral(0.323)	NULL
SIGLEC8	27181	genome.wustl.edu	37	19	51961501	51961501	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014442.2	-1	validated	p.C47*	0.028	338	0%	264	26.1%	1	0%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIGLEC5	8778	genome.wustl.edu	37	19	52132804	52132804	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003830.2	-1	validated	p.S169	0.155	162	0%	114	7.9%	2	0%	-	-	-	HMMPfam_ig,superfamily_SSF48726
SIGLEC5	8778	genome.wustl.edu	37	19	52133290	52133290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003830.2	-1	validated	p.V73M	0.991	450	0%	279	17.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
SIGLEC14	100049587	genome.wustl.edu	37	19	52149198	52149198	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098612.1	-1	validated	p.S179	1.000	144	0%	100	36%	4	0%	-	-	-	HMMPfam_ig,superfamily_SSF48726
SIGLEC14	100049587	genome.wustl.edu	37	19	52149634	52149634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098612.1	-1	validated	p.K99N	0.003	458	0%	268	19%	0	-	benign(0.003)	tolerated(0.91)	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
SIGLEC14	100049587	genome.wustl.edu	37	19	52149985	52149985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098612.1	-1	validated	p.L10M	1.000	176	0%	94	12.8%	1	0%	probably_damaging(0.977)	tolerated(0.11)	deleterious(0.691)	NULL
ZNF649	65251	genome.wustl.edu	37	19	52394499	52394499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023074.3	-1	validated	p.R297I	1.000	408	0%	249	12.4%	7	14.2%	benign(0.29)	deleterious(0)	deleterious(0.534)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF613	79898	genome.wustl.edu	37	19	52448197	52448197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031721.3	+1	validated	p.R354H	0.895	288	0%	216	25.5%	7	28.5%	probably_damaging(0.992)	tolerated(0.56)	neutral(0.454)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF613	79898	genome.wustl.edu	37	19	52448391	52448391	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031721.3	+1	validated	p.R419*	0.910	244	0%	223	21.5%	8	37.5%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF613	79898	genome.wustl.edu	37	19	52448490	52448490	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031721.3	+1	validated	p.G452*	0.923	198	0%	165	28.5%	9	55.5%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF613	79898	genome.wustl.edu	37	19	52448647	52448647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031721.3	+1	validated	p.R504K	0.995	169	0%	125	20.8%	19	42.1%	probably_damaging(0.993)	tolerated(0.16)	deleterious(0.510)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF350	59348	genome.wustl.edu	37	19	52468677	52468677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021632.3	-1	validated	p.K343N	0.979	257	0%	142	14.8%	15	13.3%	possibly_damaging(0.798)	tolerated(0.07)	deleterious(0.619)	superfamily_C2H2 and C2HC zinc fingers
ZNF350	59348	genome.wustl.edu	37	19	52471879	52471879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021632.3	-1	validated	p.E64K	0.010	522	0%	213	23.5%	6	33.3%	benign(0.053)	tolerated(0.14)	neutral(0.253)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF615	284370	genome.wustl.edu	37	19	52496986	52496986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198480.2	-1	provisional	p.R448Q	0.126	458	0%	216	20.8%	6	33.3%	possibly_damaging(0.726)	tolerated(0.17)	neutral(0.323)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF614	80110	genome.wustl.edu	37	19	52519095	52519095	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025040.3	-1	validated	p.*586R	0.189	397	0%	295	22.4%	7	42.8%	-	-	-	NULL
ZNF614	80110	genome.wustl.edu	37	19	52521291	52521291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025040.3	-1	validated	p.D70Y	0.009	754	0.1%	481	12.9%	2	0%	benign(0.079)	deleterious(0.01)	neutral(0.411)	NULL
ZNF841	284371	genome.wustl.edu	37	19	52570424	52570424	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136499.1	-1	validated	p.K237	0.055	333	0%	187	17.6%	3	33.3%	-	-	-	NULL
ZNF836	162962	genome.wustl.edu	37	19	52659960	52659960	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001102657.1	-1	provisional	p.G326*	1.000	412	0%	231	26%	1	100%	-	-	-	superfamily_SSF57667
PPP2R1A	5518	genome.wustl.edu	37	19	52714583	52714583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014225.5	+1	reviewed	p.A114V	1.000	57	0%	52	28.8%	212	32.5%	benign(0.002)	tolerated(0.15)	neutral(0.241)	HMMPfam_HEAT,superfamily_ARM repeat
PPP2R1A	5518	genome.wustl.edu	37	19	52715952	52715952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014225.5	+1	reviewed	p.L173M	1.000	72	0%	57	19.3%	200	36.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
PPP2R1A	5518	genome.wustl.edu	37	19	52715982	52715982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014225.5	+1	reviewed	p.R183W	1.000	67	0%	53	43.4%	239	51%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
ZNF766	90321	genome.wustl.edu	37	19	52785395	52785395	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010851.2	+1	validated	p.E17G	0.945	785	0%	542	19.4%	6	83.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF766	90321	genome.wustl.edu	37	19	52793333	52793333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010851.2	+1	validated	p.V97L	0.000	255	0%	203	23.6%	4	25%	benign(0.001)	tolerated(0.42)	neutral(0.014)	NULL
ZNF528	84436	genome.wustl.edu	37	19	52919001	52919001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032423.2	+1	validated	p.C299Y	0.865	197	0%	111	18.9%	3	33.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF578	147660	genome.wustl.edu	37	19	53007965	53007965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099694.1	+1	validated	p.L41M	0.064	658	0%	399	11.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF808	388558	genome.wustl.edu	37	19	53057194	53057194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039886.3	+1	validated	p.P342H	0.979	407	0%	236	22%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
ZNF808	388558	genome.wustl.edu	37	19	53058177	53058177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039886.3	+1	validated	p.R670C	0.224	389	0%	210	25.7%	0	-	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF83	55769	genome.wustl.edu	37	19	53116458	53116458	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105549.1	-1	validated	p.E454*	0.999	290	0%	162	25.9%	22	45.4%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF83	55769	genome.wustl.edu	37	19	53116751	53116751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105549.1	-1	validated	p.R356H	0.000	339	0.3%	113	28.3%	23	56.5%	benign(0.017)	tolerated(0.4)	neutral(0.017)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF611	81856	genome.wustl.edu	37	19	53208992	53208992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030972.3	-1	validated	p.S439L	0.000	504	0%	227	21.1%	4	25%	benign(0.334)	deleterious(0.02)	deleterious(0.488)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes
ZNF611	81856	genome.wustl.edu	37	19	53219083	53219083	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030972.3	-1	validated	e1+2	0.232	319	0.3%	273	18.3%	0	-	-	-	-	-
ZNF600	162966	genome.wustl.edu	37	19	53269662	53269662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198457.2	-1	validated	p.K449N	0.004	428	0%	165	13.9%	6	16.6%	possibly_damaging(0.841)	deleterious(0)	deleterious(0.766)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF28	7576	genome.wustl.edu	37	19	53303646	53303646	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006969.2	-1	validated	p.R431	0.326	415	0%	373	22.8%	8	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF468	90333	genome.wustl.edu	37	19	53344538	53344538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008801.1	-1	validated	p.A337T	0.020	425	0.2%	204	15.7%	7	28.5%	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF816	125893	genome.wustl.edu	37	19	53456042	53456042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031665.1	-1	validated	p.A51D	0.102	418	0%	397	23.7%	7	28.5%	benign(0)	tolerated(1)	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF347	84671	genome.wustl.edu	37	19	53644696	53644696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032584.2	-1	validated	p.C462Y	1.000	482	0.2%	230	24.3%	5	60%	benign(0.407)	deleterious(0)	deleterious(0.576)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF347	84671	genome.wustl.edu	37	19	53645385	53645385	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032584.2	-1	validated	p.T232	0.000	461	0%	251	14.7%	2	0%	-	-	-	NULL
ZNF347	84671	genome.wustl.edu	37	19	53652009	53652009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032584.2	-1	validated	p.P66S	0.004	643	0%	373	21.4%	6	83.3%	probably_damaging(0.991)	tolerated(0.14)	deleterious(0.694)	HMMSmart_SM00349
ZNF818P	390963	genome.wustl.edu	37	19	53716392	53716392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000344759	+1	known	p.V52F	0.000	21	0%	18	38.9%	3	66.6%	-	-	-	NULL
ZNF677	342926	genome.wustl.edu	37	19	53747102	53747102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182609.2	-1	provisional	p.W22R	1.000	410	0%	250	19.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
VN1R4	317703	genome.wustl.edu	37	19	53770690	53770690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173857.2	-1	validated	p.A77T	0.024	124	0%	100	23%	0	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	HMMPfam_V1R,superfamily_Family A G protein-coupled receptor-like
BIRC8	112401	genome.wustl.edu	37	19	53793279	53793279	+	Nonsense_Mutation	SNP	C	C	A	rs111817867		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033341.3	-1	validated	p.E117*	0.006	648	0%	628	22%	0	-	-	-	-	superfamily_Inhibitor of apoptosis (IAP) repeat
BIRC8	112401	genome.wustl.edu	37	19	53793310	53793310	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033341.3	-1	validated	p.S106R	0.005	728	0%	718	21%	0	-	benign(0.002)	tolerated(0.13)	neutral(0.253)	superfamily_Inhibitor of apoptosis (IAP) repeat
ZNF845	91664	genome.wustl.edu	37	19	53855365	53855365	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138374.1	+1	validated	p.T479	0.000	253	0.4%	201	23.9%	4	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF525	170958	genome.wustl.edu	37	19	53885236	53885236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000474037	+1	known	p.K468N	0.001	142	0%	72	29.2%	2	0%	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	NULL
ZNF813	126017	genome.wustl.edu	37	19	53994705	53994705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004301.3	+1	validated	p.G407R	1.000	343	0.3%	150	25.3%	1	100%	possibly_damaging(0.739)	deleterious(0.04)	deleterious(0.619)	superfamily_SSF57667
ZNF331	55422	genome.wustl.edu	37	19	54080123	54080123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001079906.1	+1	validated	p.M103I	0.000	208	0%	118	29.7%	2	0%	benign(0.176)	tolerated(0.79)	neutral(0.017)	NULL
ZNF331	55422	genome.wustl.edu	37	19	54080136	54080136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001079906.1	+1	validated	p.V108I	0.000	218	0%	126	12.7%	2	50%	benign(0.067)	deleterious(0.04)	neutral(0.353)	NULL
ZNF331	55422	genome.wustl.edu	37	19	54080852	54080852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001079906.1	+1	validated	p.E346D	0.340	259	0%	140	20.7%	10	20%	possibly_damaging(0.666)	deleterious(0)	deleterious(0.680)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF331	55422	genome.wustl.edu	37	19	54080885	54080885	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001079906.1	+1	validated	p.C357	0.000	251	0%	137	18.2%	5	40%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MIR516B1	574490	genome.wustl.edu	37	19	54240158	54240158	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000385211	+1	known	NULL	0.009	635	0%	229	27.9%	0	-	-	-	-	-
MIR520H	574493	genome.wustl.edu	37	19	54245773	54245773	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000385126	+1	known	NULL	0.006	489	0%	194	9.8%	0	-	-	-	-	-
MIR519A1	574496	genome.wustl.edu	37	19	54255729	54255729	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000385257	+1	known	NULL	0.025	610	0%	331	20.8%	0	-	-	-	-	-
NLRP12	91662	genome.wustl.edu	37	19	54313244	54313244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144687.2	-1	reviewed	p.A557T	0.996	51	0%	52	15.4%	2	0%	probably_damaging(0.994)	tolerated(0.28)	deleterious(0.484)	NULL
NLRP12	91662	genome.wustl.edu	37	19	54313665	54313665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144687.2	-1	reviewed	p.Q416H	1.000	53	0%	33	12.1%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
NLRP12	91662	genome.wustl.edu	37	19	54314033	54314033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144687.2	-1	reviewed	p.D294N	0.987	80	0%	58	27.6%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_NACHT
MYADM	91663	genome.wustl.edu	37	19	54376973	54376973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001020818.1	+1	validated	p.M64V	0.399	137	0%	178	23.6%	159	40.8%	possibly_damaging(0.772)	tolerated(0.81)	neutral(0.287)	HMMPfam_MARVEL
PRKCG	5582	genome.wustl.edu	37	19	54401357	54401357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002739.3	+1	reviewed	p.F362L	1.000	301	0%	303	20.8%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
TFPT	29844	genome.wustl.edu	37	19	54611633	54611633	+	Missense_Mutation	SNP	C	C	A	rs61746580		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013342.3	-1	validated	p.E141D	1.000	80	0%	80	21.2%	61	32.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PRPF31	26121	genome.wustl.edu	37	19	54621832	54621832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015629.3	+1	reviewed	p.K58N	1.000	360	0%	267	19.1%	73	5.4%	benign(0.221)	deleterious(0.04)	neutral(0.371)	NULL
PRPF31	26121	genome.wustl.edu	37	19	54626940	54626940	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015629.3	+1	reviewed	e5+1	1.000	167	0%	143	21.7%	8	100%	-	-	-	-
CNOT3	4849	genome.wustl.edu	37	19	54648045	54648045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014516.2	+1	validated	p.R154C	0.873	335	0%	296	23.6%	69	31.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Not3
CNOT3	4849	genome.wustl.edu	37	19	54649413	54649413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014516.2	+1	validated	p.R188H	1.000	94	0%	110	13.6%	64	26.5%	possibly_damaging(0.807)	deleterious(0)	deleterious(0.748)	HMMPfam_Not3
MBOAT7	79143	genome.wustl.edu	37	19	54682523	54682523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024298.3	-1	reviewed	p.Q330H	1.000	45	0%	55	29.1%	95	43.1%	benign(0.01)	tolerated(0.61)	neutral(0.005)	HMMPfam_MBOAT
LILRB5	10990	genome.wustl.edu	37	19	54758901	54758901	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001081442.1	-1	reviewed	e6-1	0.081	64	0%	54	16.7%	0	-	-	-	-	-
LILRB2	10288	genome.wustl.edu	37	19	54783290	54783290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005874.3	-1	reviewed	p.R190C	0.000	309	0%	255	28.6%	11	0%	benign(0.041)	deleterious(0.03)	neutral(0.367)	HMMPfam_ig,superfamily_Immunoglobulin
LILRA3	11026	genome.wustl.edu	37	19	54802187	54802187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006865.3	-1	validated	p.P334L	0.000	76	0%	58	39.7%	3	0%	possibly_damaging(0.663)	tolerated(0.13)	deleterious(0.487)	HMMSmart_IG,superfamily_SSF48726
LILRA3	11026	genome.wustl.edu	37	19	54804147	54804147	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006865.3	-1	validated	p.I9	0.006	265	0.4%	194	49%	1	0%	-	-	-	NULL
LILRA4	23547	genome.wustl.edu	37	19	54849827	54849827	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012276.3	-1	reviewed	p.N65	0.000	234	0%	185	24.9%	2	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
TTYH1	57348	genome.wustl.edu	37	19	54930463	54930463	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005367.1	+1	reviewed	p.V96	0.949	56	0%	59	10.2%	0	-	-	-	-	HMMPfam_Tweety
LENG8	114823	genome.wustl.edu	37	19	54967355	54967355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052925.2	+1	validated	p.S412N	1.000	89	0%	68	14.7%	20	10%	probably_damaging(0.996)	tolerated(0.22)	deleterious(0.504)	NULL
LENG9	94059	genome.wustl.edu	37	19	54973737	54973737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198988.1	-1	validated	p.V347M	0.000	27	0%	35	14.3%	23	39.1%	possibly_damaging(0.475)	tolerated(0.05)	deleterious(0.502)	superfamily_Cyc_nuc_Pdiester
LILRA1	11024	genome.wustl.edu	37	19	55106148	55106148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006863.1	+1	provisional	p.T30I	0.110	200	0%	173	31.2%	0	-	probably_damaging(0.989)	tolerated(0.4)	neutral(0.456)	superfamily_Immunoglobulin
LILRA1	11024	genome.wustl.edu	37	19	55106781	55106781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006863.1	+1	provisional	p.R192M	0.002	453	0%	350	22.3%	2	0%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
LILRB1	10859	genome.wustl.edu	37	19	55147036	55147036	+	Missense_Mutation	SNP	G	G	T	rs61737692	byFrequency	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001081637.1	+1	reviewed	p.E543D	0.020	145	0%	138	24.6%	24	0%	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	NULL
KIR3DL1	3811	genome.wustl.edu	37	19	55341648	55341648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013289.2	+1	reviewed	p.P418H	0.004	1062	0%	607	20.4%	0	-	possibly_damaging(0.44)	deleterious(0)	deleterious(0.588)	NULL
KIR2DS4	3809	genome.wustl.edu	37	19	55349322	55349322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000339924	+1	known	p.V121A	0.000	580	0%	374	22.7%	0	-	possibly_damaging(0.733)	deleterious(0)	deleterious(0.713)	superfamily_Immunoglobulin
KIR3DL2	3812	genome.wustl.edu	37	19	55377847	55377847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006737.2	+1	reviewed	p.E376D	0.004	576	0.2%	321	22.4%	1	0%	benign(0.157)	deleterious(0)	neutral(0.459)	NULL
FCAR	2204	genome.wustl.edu	37	19	55399619	55399619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002000.2	+1	reviewed	p.L203M	0.025	167	0%	113	23.9%	1	0%	benign(0.332)	tolerated(0.11)	neutral(0.376)	HMMSmart_SM00409,superfamily_Immunoglobulin
NLRP2	55655	genome.wustl.edu	37	19	55494199	55494199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017852.3	+1	validated	p.A378V	0.104	61	0%	74	24.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
NLRP2	55655	genome.wustl.edu	37	19	55501875	55501875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017852.3	+1	validated	p.E848G	0.024	402	0%	294	23.1%	0	-	possibly_damaging(0.559)	tolerated(0.06)	deleterious(0.513)	HMMSmart_SM00368,superfamily_RNI-like
NLRP2	55655	genome.wustl.edu	37	19	55501892	55501892	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017852.3	+1	validated	p.E854*	0.194	429	0%	335	19.4%	0	-	-	-	-	HMMSmart_SM00368,superfamily_RNI-like
RDH13	112724	genome.wustl.edu	37	19	55570582	55570582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000415061	-1	known	p.V43M	0.960	92	0%	103	21.4%	6	50%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_adh_short,superfamily_NAD(P)-bd
PPP1R12C	54776	genome.wustl.edu	37	19	55606835	55606835	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017607.2	-1	provisional	p.W455*	0.017	34	0%	36	27.8%	39	5.1%	-	-	-	NULL
DNAAF3	352909	genome.wustl.edu	37	19	55670722	55670722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178837.3	-1	validated	p.A492V	0.000	75	0%	78	20.5%	25	44%	benign(0.14)	tolerated(0.16)	neutral(0.071)	NULL
PTPRH	5794	genome.wustl.edu	37	19	55708151	55708151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002842.3	-1	validated	p.D666Y	0.013	90	0%	74	27%	18	22.2%	probably_damaging(0.97)	deleterious(0.04)	deleterious(0.761)	NULL
TMEM86B	255043	genome.wustl.edu	37	19	55740104	55740104	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173804.4	-1	validated	p.D2	0.000	24	0%	36	36.1%	3	66.6%	-	-	-	NULL
BRSK1	84446	genome.wustl.edu	37	19	55814728	55814728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032430.1	+1	validated	p.R360W	1.000	98	0%	137	29.9%	4	50%	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	NULL
BRSK1	84446	genome.wustl.edu	37	19	55815459	55815459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032430.1	+1	validated	p.S443I	1.000	129	0%	185	19.5%	3	33.3%	benign(0.056)	deleterious(0.01)	neutral(0.409)	NULL
FAM71E2	284418	genome.wustl.edu	37	19	55871036	55871036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145402.1	-1	predicted	p.Q400H	0.003	90	0%	92	22.8%	0	-	benign(0.057)	tolerated(0.22)	neutral(0.046)	NULL
TMEM190	147744	genome.wustl.edu	37	19	55889376	55889376	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139172.1	+1	provisional	p.P113	0.000	37	0%	33	18.2%	4	50%	-	-	-	NULL
ISOC2	79763	genome.wustl.edu	37	19	55966469	55966469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024710.2	-1	validated	p.V158M	1.000	32	0%	32	15.6%	259	1.5%	benign(0.212)	tolerated(0.33)	neutral(0.044)	HMMPfam_Isochorismatase,superfamily_Iscrsm_hydrolase
ZNF628	89887	genome.wustl.edu	37	19	55994385	55994385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033113.2	+1	validated	p.L605M	1.000	43	0%	25	20%	7	28.5%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF628	89887	genome.wustl.edu	37	19	55994967	55994967	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033113.2	+1	validated	p.Q799*	0.938	17	0%	39	30.8%	1	0%	-	-	-	NULL
ZNF628	89887	genome.wustl.edu	37	19	55995031	55995031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033113.2	+1	validated	p.R820Q	0.992	40	0%	52	15.4%	7	14.2%	unknown(0)	deleterious(0.02)	-	NULL
SSC5D	284297	genome.wustl.edu	37	19	56005988	56005988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144950.1	+1	provisional	p.G409C	0.004	43	0%	53	32.1%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SRCR-like
SSC5D	284297	genome.wustl.edu	37	19	56011556	56011556	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144950.1	+1	provisional	p.T693	0.614	112	0%	155	16.1%	1	0%	-	-	-	NULL
SSC5D	284297	genome.wustl.edu	37	19	56024533	56024533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144950.1	+1	provisional	p.D981Y	0.096	62	0%	66	18.2%	1	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
SSC5D	284297	genome.wustl.edu	37	19	56029321	56029321	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144950.1	+1	provisional	p.T1226	0.000	1335	0%	1321	19.5%	4	0%	-	-	-	NULL
SSC5D	284297	genome.wustl.edu	37	19	56029495	56029495	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144950.1	+1	provisional	p.T1284	0.016	816	0%	820	23.8%	1	0%	-	-	-	NULL
SBK2	646643	genome.wustl.edu	37	19	56047460	56047460	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001101401.1	-1	provisional	p.L68	1.000	52	0%	21	19%	0	-	-	-	-	superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
CCDC106	29903	genome.wustl.edu	37	19	56160884	56160884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013301.2	+1	validated	p.E83K	1.000	164	0%	184	25%	59	49.1%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
U2AF2	11338	genome.wustl.edu	37	19	56173963	56173963	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007279.2	+1	reviewed	p.D194	1.000	183	0%	183	23.5%	127	37%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
U2AF2	11338	genome.wustl.edu	37	19	56181010	56181010	+	Silent	SNP	C	C	T	rs147043069	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007279.2	+1	reviewed	p.I415	0.946	208	0%	190	23.7%	321	40.8%	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
EPN1	29924	genome.wustl.edu	37	19	56189046	56189046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130071.1	+1	validated	p.A60T	0.000	269	0%	353	23.2%	0	-	unknown(0)	-	-	NULL
EPN1	29924	genome.wustl.edu	37	19	56196854	56196854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001130071.1	+1	validated	p.K218N	1.000	70	0%	33	18.2%	180	38.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273
NLRP9	338321	genome.wustl.edu	37	19	56223274	56223274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176820.2	-1	reviewed	p.C912Y	0.123	210	0%	120	25%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00368,superfamily_RNI-like
NLRP9	338321	genome.wustl.edu	37	19	56243837	56243837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176820.2	-1	reviewed	p.A454T	0.896	172	1.2%	63	19%	0	-	benign(0.049)	tolerated(0.09)	neutral(0.299)	NULL
NLRP9	338321	genome.wustl.edu	37	19	56244757	56244757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176820.2	-1	reviewed	p.T147N	0.060	218	0%	149	20.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_NACHT
NLRP4	147945	genome.wustl.edu	37	19	56373506	56373506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134444.4	+1	validated	p.G723C	0.009	360	0.3%	124	10.5%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00368,superfamily_RNI-like
NLRP5	126206	genome.wustl.edu	37	19	56565029	56565029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153447.4	+1	reviewed	p.A1052T	0.000	167	0%	102	16.7%	0	-	benign(0.028)	tolerated(0.58)	neutral(0.007)	superfamily_SSF52047
ZSCAN5B	342933	genome.wustl.edu	37	19	56704220	56704220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001080456.2	-1	validated	p.L68M	0.025	272	0.4%	168	17.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SCAN,HMMSmart_SCAN
ZSCAN5C	649137	genome.wustl.edu	37	19	56717402	56717402	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000376267	+1	known	p.P40	0.000	178	0%	150	21.3%	0	-	-	-	-	HMMPfam_SCAN,HMMSmart_SCAN
ZSCAN5A	79149	genome.wustl.edu	37	19	56736248	56736248	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024303.1	-1	provisional	p.S56	0.000	322	0%	291	25.8%	1	0%	-	-	-	HMMPfam_SCAN,HMMSmart_SCAN
ENSG00000197025	0	genome.wustl.edu	37	19	56884612	56884612	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000440984	+1	known	p.T35	0.010	18	0%	16	25%	4	50%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF667	63934	genome.wustl.edu	37	19	56973782	56973782	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000342634	-1	known	p.L79	0.000	197	0%	140	26.4%	0	-	-	-	-	NULL
ZNF470	388566	genome.wustl.edu	37	19	57089807	57089807	+	Silent	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001668.3	+1	validated	p.I670	0.510	335	0%	218	23.9%	1	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF71	58491	genome.wustl.edu	37	19	57133822	57133822	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021216.4	+1	validated	p.K389	0.980	149	0%	110	11.8%	10	20%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF71	58491	genome.wustl.edu	37	19	57134041	57134041	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021216.4	+1	validated	p.G462	0.315	62	0%	45	33.3%	14	28.5%	-	-	-	superfamily_SSF57667
ZIM2	23619	genome.wustl.edu	37	19	57286559	57286559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015363.4	-1	reviewed	p.C361R	0.634	281	0%	147	23.1%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF264	9422	genome.wustl.edu	37	19	57724079	57724079	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003417.4	+1	reviewed	p.P538	0.326	287	0%	141	27%	3	66.6%	-	-	-	superfamily_SSF57667
AURKC	6795	genome.wustl.edu	37	19	57746717	57746717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001015878.1	+1	reviewed	p.L288M	0.191	174	0%	218	24.3%	6	0%	benign(0.005)	tolerated(0.56)	neutral(0.006)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZNF460	10794	genome.wustl.edu	37	19	57802778	57802778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006635.3	+1	validated	p.T290I	0.008	214	0%	87	21.8%	1	100%	benign(0.113)	tolerated(0.18)	neutral(0.065)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF304	57343	genome.wustl.edu	37	19	57865178	57865178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020657.2	+1	validated	p.R40H	0.029	660	0%	419	18.9%	3	100%	benign(0.016)	tolerated(0.45)	neutral(0.013)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF304	57343	genome.wustl.edu	37	19	57867669	57867669	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020657.2	+1	validated	p.C144	0.000	155	0%	103	24.3%	1	0%	-	-	-	NULL
ZNF304	57343	genome.wustl.edu	37	19	57868160	57868160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020657.2	+1	validated	p.T308I	0.000	320	0%	221	22.2%	4	50%	possibly_damaging(0.718)	tolerated(0.14)	deleterious(0.510)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF304	57343	genome.wustl.edu	37	19	57869083	57869083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020657.2	+1	validated	p.V616I	0.000	254	0%	162	23.5%	0	-	possibly_damaging(0.942)	deleterious(0.03)	deleterious(0.752)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TRAPPC2P1	10597	genome.wustl.edu	37	19	57876326	57876326	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_002166.1	+1	provisional	NULL	0.991	206	0%	122	12.3%	14	64.2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	-
ZNF547	284306	genome.wustl.edu	37	19	57888541	57888541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173631.2	+1	validated	p.G66D	0.001	291	0%	127	25.2%	0	-	possibly_damaging(0.616)	tolerated(0.38)	neutral(0.232)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF547	284306	genome.wustl.edu	37	19	57888804	57888804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173631.2	+1	validated	p.K154E	0.524	181	0%	106	24.5%	1	0%	benign(0)	tolerated(0.43)	neutral(0.013)	superfamily_C2H2 and C2HC zinc fingers
ZNF547	284306	genome.wustl.edu	37	19	57889225	57889225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173631.2	+1	validated	p.R294M	0.615	513	0%	197	18.3%	3	33.3%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_C2H2 and C2HC zinc fingers
ZNF17	7565	genome.wustl.edu	37	19	57931064	57931064	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006959.2	+1	validated	p.V68	0.003	392	0%	219	19.6%	4	75%	-	-	-	HMMSmart_SM00349
ZNF17	7565	genome.wustl.edu	37	19	57931130	57931130	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006959.2	+1	validated	p.S90	0.001	331	0%	194	16.5%	3	33.3%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ZNF17	7565	genome.wustl.edu	37	19	57931403	57931403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006959.2	+1	validated	p.E181D	0.000	264	0%	133	24.1%	0	-	possibly_damaging(0.948)	tolerated(0.32)	neutral(0.415)	NULL
ZNF772	400720	genome.wustl.edu	37	19	57984937	57984937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001024596.2	-1	validated	p.R392I	0.000	327	0%	281	23.5%	0	-	probably_damaging(0.969)	tolerated(0.3)	neutral(0.440)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF772	400720	genome.wustl.edu	37	19	57985649	57985649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001024596.2	-1	validated	p.D155Y	0.089	299	0%	255	25.9%	1	100%	benign(0.147)	deleterious(0)	neutral(0.458)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF549	256051	genome.wustl.edu	37	19	58046523	58046523	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153263.1	+1	provisional	p.T15	0.803	304	0%	236	12.7%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF550	162972	genome.wustl.edu	37	19	58058692	58058692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039654.1	-1	provisional	p.R266M	0.054	658	0%	283	19.8%	2	0%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF416	55659	genome.wustl.edu	37	19	58084479	58084479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017879.1	-1	provisional	p.P265T	0.001	356	0%	359	23.7%	4	25%	benign(0.001)	tolerated(1)	-	superfamily_SSF57667
ZNF416	55659	genome.wustl.edu	37	19	58089428	58089428	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017879.1	-1	provisional	p.T24	0.000	179	0%	193	13%	0	-	-	-	-	superfamily_Krueppel-associated_box
ZIK1	284307	genome.wustl.edu	37	19	58102319	58102319	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010879.2	+1	provisional	p.E380D	0.468	296	0%	253	11.9%	1	100%	benign(0.032)	tolerated(0.09)	neutral(0.298)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers
ZNF530	348327	genome.wustl.edu	37	19	58117327	58117327	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020880.3	+1	validated	p.L145R	0.000	91	0%	99	35.4%	0	-	possibly_damaging(0.85)	tolerated(0.35)	neutral(0.348)	superfamily_SSF57667
ZNF530	348327	genome.wustl.edu	37	19	58117885	58117885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020880.3	+1	validated	p.S331Y	0.000	293	0%	199	18.1%	4	25%	probably_damaging(0.993)	tolerated(1)	neutral(0.450)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF530	348327	genome.wustl.edu	37	19	58118491	58118491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020880.3	+1	validated	p.A533V	0.001	312	0%	281	15.7%	1	0%	benign(0.015)	tolerated(0.2)	neutral(0.050)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF551	90233	genome.wustl.edu	37	19	58198168	58198168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138347.3	+1	validated	p.F159L	0.004	92	0%	74	20.3%	0	-	benign(0.002)	tolerated(0.86)	neutral(0.001)	NULL
ZNF551	90233	genome.wustl.edu	37	19	58198609	58198609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138347.3	+1	validated	p.F306L	0.000	168	0%	115	16.5%	2	50%	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF154	7710	genome.wustl.edu	37	19	58213991	58213991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001085384.1	-1	validated	p.A109D	0.000	195	0%	171	26.3%	0	-	benign(0.001)	tolerated(0.62)	neutral(0.004)	NULL
ZNF776	284309	genome.wustl.edu	37	19	58264707	58264707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173632.3	+1	validated	p.S70Y	0.001	312	0%	218	23.9%	1	0%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF776	284309	genome.wustl.edu	37	19	58265860	58265860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173632.3	+1	validated	p.H454Q	1.000	602	0%	292	22.9%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF552	79818	genome.wustl.edu	37	19	58319613	58319613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024762.3	-1	validated	p.R340H	0.000	477	0%	316	20.3%	11	54.5%	benign(0.089)	tolerated(0.22)	neutral(0.049)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF552	79818	genome.wustl.edu	37	19	58319820	58319820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024762.3	-1	validated	p.G271V	0.000	457	0.2%	323	11.8%	7	0%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF418	147686	genome.wustl.edu	37	19	58438338	58438338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_133460.1	-1	provisional	p.G404V	1.000	640	0.3%	421	11.4%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF606	80095	genome.wustl.edu	37	19	58499583	58499583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025027.3	-1	validated	p.T131I	0.004	163	0%	90	18.9%	3	0%	benign(0.006)	tolerated(0.07)	neutral(0.319)	NULL
ZNF329	79673	genome.wustl.edu	37	19	58640146	58640146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024620.3	-1	validated	p.K242R	0.991	326	0%	253	22.5%	3	66.6%	possibly_damaging(0.918)	tolerated(0.87)	neutral(0.369)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF329	79673	genome.wustl.edu	37	19	58640210	58640210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024620.3	-1	validated	p.H221Y	0.997	306	0%	246	25.6%	11	54.5%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF544	27300	genome.wustl.edu	37	19	58755407	58755407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014480.2	+1	provisional	p.M6I	0.000	219	0%	131	15.3%	58	50%	benign(0.014)	tolerated(0.28)	neutral(0.032)	NULL
ZNF8	7554	genome.wustl.edu	37	19	58806516	58806516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021089.2	+1	validated	p.L448M	0.980	66	1.5%	32	25%	4	0%	possibly_damaging(0.701)	deleterious(0.02)	deleterious(0.635)	NULL
ZSCAN22	342945	genome.wustl.edu	37	19	58849838	58849838	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181846.2	+1	validated	p.S208T	0.000	166	0%	113	11.5%	2	0%	benign(0.073)	tolerated(0.28)	neutral(0.036)	NULL
ZNF324B	388569	genome.wustl.edu	37	19	58966576	58966576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207395.2	+1	validated	p.D89Y	0.000	151	0%	197	23.4%	1	100%	possibly_damaging(0.519)	tolerated(0.11)	neutral(0.446)	NULL
ZNF324B	388569	genome.wustl.edu	37	19	58966766	58966766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_207395.2	+1	validated	p.R152H	0.149	76	0%	92	20.7%	4	75%	benign(0.002)	tolerated(0.12)	neutral(0.261)	NULL
ZBTB45	84878	genome.wustl.edu	37	19	59027998	59027998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032792.2	-1	provisional	p.A348V	0.408	21	0%	38	21.1%	19	31.5%	benign(0.006)	tolerated(0.1)	neutral(0.286)	NULL
ZBTB45	84878	genome.wustl.edu	37	19	59028960	59028960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032792.2	-1	provisional	p.R27S	0.629	68	0%	84	21.4%	21	38%	benign(0.185)	deleterious(0)	neutral(0.462)	superfamily_BTB/POZ_fold,HMMPfam_BTB
TRIM28	10155	genome.wustl.edu	37	19	59060961	59060961	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005762.2	+1	reviewed	p.Q642	1.000	101	0%	137	16.8%	663	43.7%	-	-	-	HMMSmart_SM00184,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
MZF1	7593	genome.wustl.edu	37	19	59082703	59082703	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003422.2	-1	validated	p.G18	0.000	46	0%	44	15.9%	5	40%	-	-	-	NULL
NRSN2	80023	genome.wustl.edu	37	20	330448	330448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024958.2	+1	validated	p.R54H	0.000	31	0%	41	31.7%	51	39.2%	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
TRIB3	57761	genome.wustl.edu	37	20	372074	372074	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021158.3	+1	reviewed	p.H145	1.000	38	0%	38	21.1%	21	33.3%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
TBC1D20	128637	genome.wustl.edu	37	20	419876	419876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144628.2	-1	validated	p.L278M	1.000	317	0%	199	21.1%	31	25.8%	probably_damaging(0.982)	tolerated(0.08)	deleterious(0.726)	superfamily_Ypt/Rab-GAP domain of gyp1p
SLC52A3	113278	genome.wustl.edu	37	20	746308	746308	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033409.3	-1	validated	p.G37	0.993	72	0%	70	15.7%	11	18.1%	-	-	-	NULL
PSMF1	9491	genome.wustl.edu	37	20	1106170	1106170	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006814.3	+1	reviewed	p.L53	1.000	274	0%	198	22.7%	182	40.1%	-	-	-	NULL
NSFL1C	55968	genome.wustl.edu	37	20	1426360	1426360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016143.3	-1	reviewed	p.R301W	1.000	329	0%	154	26%	171	36.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UBX,HMMSmart_SM00166,superfamily_Ubiquitin-like
SIRPB2	284759	genome.wustl.edu	37	20	1459010	1459010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122962.1	-1	validated	p.V232I	0.009	164	0%	100	16%	0	-	benign(0.019)	tolerated(0.71)	neutral(0.003)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
STK35	140901	genome.wustl.edu	37	20	2097414	2097414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080836.3	+1	reviewed	p.P199L	1.000	354	0.3%	133	19.5%	5	40%	benign(0.307)	tolerated(0.72)	neutral(0.097)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TGM6	343641	genome.wustl.edu	37	20	2375890	2375890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198994.2	+1	validated	p.E78K	0.285	134	0%	146	16.4%	0	-	benign(0.039)	tolerated(0.7)	neutral(0.004)	HMMPfam_Transglut_N,superfamily_E set domains
TGM6	343641	genome.wustl.edu	37	20	2397967	2397967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198994.2	+1	validated	p.A476T	0.325	46	0%	30	13.3%	0	-	benign(0.086)	tolerated(0.62)	neutral(0.010)	NULL
TMC2	117532	genome.wustl.edu	37	20	2572973	2572973	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080751.2	+1	validated	p.P284	0.995	318	0%	179	22.3%	0	-	-	-	-	NULL
TMC2	117532	genome.wustl.edu	37	20	2582851	2582851	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080751.2	+1	validated	p.C439*	1.000	712	0%	184	22.8%	0	-	-	-	-	NULL
NOP56	10528	genome.wustl.edu	37	20	2637470	2637470	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006392.2	+1	reviewed	p.R404*	1.000	363	0.6%	305	19.3%	183	18%	-	-	-	HMMPfam_Nop,superfamily_SSF89124
CPXM1	56265	genome.wustl.edu	37	20	2774977	2774977	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019609.4	-1	reviewed	p.T688	0.985	61	0%	62	24.2%	63	1.5%	-	-	-	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain
VPS16	64601	genome.wustl.edu	37	20	2842501	2842501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022575.2	+1	reviewed	p.R317H	1.000	149	0.7%	155	10.3%	26	19.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Vps16_N
VPS16	64601	genome.wustl.edu	37	20	2843494	2843494	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022575.2	+1	reviewed	p.P415	0.018	94	0%	108	15.7%	48	33.3%	-	-	-	HMMPfam_Vps16_N
VPS16	64601	genome.wustl.edu	37	20	2843543	2843543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022575.2	+1	reviewed	p.R432W	0.977	104	0%	128	25%	30	53.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VPS16	64601	genome.wustl.edu	37	20	2844635	2844635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022575.2	+1	reviewed	p.A506V	1.000	56	0%	64	25%	48	52%	possibly_damaging(0.952)	tolerated(0.19)	neutral(0.445)	NULL
PTPRA	5786	genome.wustl.edu	37	20	2998494	2998494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002836.3	+1	reviewed	p.R326W	1.000	409	0.5%	504	22.2%	32	46.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
UBOX5	22888	genome.wustl.edu	37	20	3102384	3102384	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014948.2	-1	validated	p.R301*	1.000	87	0%	87	21.8%	8	37.5%	-	-	-	HMMPfam_U-box,HMMSmart_SM00504,superfamily_RING/U-box
UBOX5	22888	genome.wustl.edu	37	20	3103091	3103091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014948.2	-1	validated	p.R65M	1.000	281	0%	249	25.7%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FASTKD5	60493	genome.wustl.edu	37	20	3127786	3127786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021826.4	-1	validated	p.G644D	0.001	78	0%	41	24.4%	18	38.8%	benign(0.071)	tolerated(0.29)	neutral(0.034)	NULL
FASTKD5	60493	genome.wustl.edu	37	20	3128440	3128440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021826.4	-1	validated	p.R426Q	1.000	202	0%	109	28.4%	10	50%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
ProSAPiP1	9762	genome.wustl.edu	37	20	3146796	3146796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014731.2	-1	validated	p.L224I	1.000	49	0%	96	22.9%	24	62.5%	benign(0.158)	deleterious(0.02)	neutral(0.397)	NULL
ProSAPiP1	9762	genome.wustl.edu	37	20	3147530	3147530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014731.2	-1	validated	p.A94T	1.000	79	0%	61	23%	11	54.5%	benign(0.264)	tolerated(0.09)	neutral(0.324)	NULL
SLC4A11	83959	genome.wustl.edu	37	20	3210887	3210887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032034.3	-1	reviewed	p.A495T	1.000	84	0%	90	21.1%	18	66.6%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_HCO3_cotransp
C20orf194	25943	genome.wustl.edu	37	20	3233329	3233329	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009984.1	-1	validated	p.L1141	0.997	425	0.2%	413	19.9%	2	0%	-	-	-	NULL
C20orf194	25943	genome.wustl.edu	37	20	3236733	3236733	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009984.1	-1	validated	p.Q1060	0.998	243	0%	240	24.2%	2	50%	-	-	-	NULL
ATRN	8455	genome.wustl.edu	37	20	3578637	3578637	+	Missense_Mutation	SNP	C	C	T	rs74789109		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_139321.2	+1	reviewed	p.T1185I	1.000	420	0%	210	25.2%	17	47%	probably_damaging(0.981)	tolerated(0.18)	deleterious(0.481)	NULL
ADAM33	80332	genome.wustl.edu	37	20	3655271	3655271	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025220.2	-1	reviewed	p.D160	0.453	77	0%	115	17.4%	0	-	-	-	-	HMMPfam_Pep_M12B_propep
ADAM33	80332	genome.wustl.edu	37	20	3657791	3657791	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025220.2	-1	reviewed	e3-1	0.995	103	0%	109	20.2%	0	-	-	-	-	-
SIGLEC1	6614	genome.wustl.edu	37	20	3677921	3677921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_023068.3	-1	reviewed	p.V731M	0.611	174	0%	199	22.6%	3	0%	probably_damaging(0.985)	deleterious(0.02)	deleterious(0.815)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
HSPA12B	116835	genome.wustl.edu	37	20	3726206	3726206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052970.3	+1	reviewed	p.A174T	1.000	84	0%	88	12.5%	3	0%	benign(0.072)	tolerated(0.06)	neutral(0.328)	superfamily_SSF53067
C20orf27	54976	genome.wustl.edu	37	20	3739201	3739201	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000399683	-1	known	p.T42I	0.994	200	0%	246	24.8%	96	30.2%	-	-	-	NULL
PANK2	80025	genome.wustl.edu	37	20	3891319	3891319	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153638.2	+1	reviewed	p.Q359	1.000	415	0%	174	15.5%	25	20%	-	-	-	HMMPfam_Fumble,superfamily_Actin-like ATPase domain
SMOX	54498	genome.wustl.edu	37	20	4163202	4163202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175839.1	+1	reviewed	p.R359H	1.000	78	0%	74	21.6%	36	44.4%	possibly_damaging(0.828)	deleterious(0.03)	deleterious(0.678)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
PRND	23627	genome.wustl.edu	37	20	4705481	4705481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012409.2	+1	reviewed	p.S95Y	0.915	45	0%	51	21.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Prion,superfamily_Prion-like
RASSF2	9770	genome.wustl.edu	37	20	4768353	4768353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014737.2	-1	reviewed	p.L247F	1.000	406	0%	221	19.5%	2	0%	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMPfam_RA,HMMSmart_RA
RASSF2	9770	genome.wustl.edu	37	20	4771210	4771210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014737.2	-1	reviewed	p.R142C	1.000	101	0%	52	25%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC23A2	9962	genome.wustl.edu	37	20	4913118	4913118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005116.5	-1	reviewed	p.A31S	0.003	438	0%	187	21.4%	2	0%	benign(0)	tolerated(0.8)	neutral(0.001)	NULL
C20orf30	29058	genome.wustl.edu	37	20	5086887	5086887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009923.1	-1	validated	p.A120T	0.469	250	0%	212	21.7%	88	21.5%	benign(0)	tolerated(1)	-	HMMPfam_DUF872
C20orf30	29058	genome.wustl.edu	37	20	5090091	5090091	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009923.1	-1	validated	p.L59	0.914	248	0%	193	24.9%	92	46.7%	-	-	-	NULL
PCNA	5111	genome.wustl.edu	37	20	5100336	5100336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002592.2	-1	reviewed	p.L37M	1.000	58	0%	75	26.7%	303	36.9%	possibly_damaging(0.63)	deleterious(0.03)	deleterious(0.585)	HMMPfam_PCNA_N,PatternScan_PCNA_1,superfamily_DNA clamp
GPCPD1	56261	genome.wustl.edu	37	20	5528342	5528342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019593.3	-1	validated	p.D662N	0.995	305	0%	94	27.7%	11	9%	unknown(0)	tolerated(0.15)	-	NULL
GPCPD1	56261	genome.wustl.edu	37	20	5559047	5559047	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019593.3	-1	validated	p.E228D	1.000	237	0%	161	25.5%	9	11.1%	possibly_damaging(0.811)	tolerated(0.19)	neutral(0.355)	NULL
C20orf196	149840	genome.wustl.edu	37	20	5843956	5843956	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152504.2	+1	predicted	p.D155	0.993	149	0%	68	23.5%	9	44.4%	-	-	-	NULL
MCM8	84515	genome.wustl.edu	37	20	5948123	5948123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032485.4	+1	reviewed	p.R306Q	1.000	301	0%	200	23%	3	66.6%	probably_damaging(0.961)	tolerated(0.14)	deleterious(0.653)	HMMSmart_SM00350,superfamily_Nucleic acid-binding proteins
LRRN4	164312	genome.wustl.edu	37	20	6022397	6022397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152611.3	-1	validated	p.Q498H	0.001	160	0%	175	24%	2	50%	possibly_damaging(0.509)	tolerated(0.15)	neutral(0.411)	NULL
FERMT1	55612	genome.wustl.edu	37	20	6057832	6057832	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017671.4	-1	reviewed	p.G674	0.531	141	0%	67	23.9%	1	100%	-	-	-	NULL
FERMT1	55612	genome.wustl.edu	37	20	6057964	6057964	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017671.4	-1	reviewed	p.F630	0.411	139	0%	47	25.5%	0	-	-	-	-	NULL
HAO1	54363	genome.wustl.edu	37	20	7866360	7866360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017545.2	-1	reviewed	p.A322V	1.000	203	0%	85	21.2%	0	-	benign(0.31)	deleterious(0.02)	deleterious(0.480)	HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases
PLCB1	23236	genome.wustl.edu	37	20	8862337	8862337	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015192.2	+1	reviewed	p.F1164	0.114	220	0%	63	9.5%	10	70%	-	-	-	HMMPfam_PLC-beta_C
PLCB4	5332	genome.wustl.edu	37	20	9288502	9288502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000933.3	+1	reviewed	p.P14L	1.000	290	0.3%	122	13.9%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF50729
PLCB4	5332	genome.wustl.edu	37	20	9376258	9376258	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000933.3	+1	reviewed	p.I501	1.000	374	0.3%	174	23.6%	2	50%	-	-	-	superfamily_PLC-like_Pdiesterase_TIM-brl
SNAP25	6616	genome.wustl.edu	37	20	10273897	10273897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_130811.1	+1	reviewed	p.F84L	1.000	541	0%	171	25.7%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
C20orf94	128710	genome.wustl.edu	37	20	10541416	10541416	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009608.1	+1	validated	p.Q62	0.553	249	0%	98	21.4%	1	100%	-	-	-	NULL
JAG1	182	genome.wustl.edu	37	20	10625849	10625849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000214.2	-1	reviewed	p.E723D	0.995	220	0%	131	19.8%	28	42.8%	probably_damaging(0.991)	tolerated(0.61)	neutral(0.448)	PatternScan_ASX_HYDROXYL,HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
JAG1	182	genome.wustl.edu	37	20	10632240	10632240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000214.2	-1	reviewed	p.T370I	1.000	119	0%	71	25.4%	15	46.6%	possibly_damaging(0.694)	tolerated(0.11)	deleterious(0.520)	HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196
BTBD3	22903	genome.wustl.edu	37	20	11899004	11899004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014962.2	+1	validated	p.K27N	1.000	251	0.4%	85	12.9%	6	66.6%	benign(0.079)	tolerated(0.07)	neutral(0.325)	NULL
BTBD3	22903	genome.wustl.edu	37	20	11903390	11903390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014962.2	+1	validated	p.F215L	1.000	111	0%	76	21.1%	19	42.1%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
SPTLC3	55304	genome.wustl.edu	37	20	13098361	13098361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018327.2	+1	validated	p.A381S	1.000	107	0%	42	23.8%	3	33.3%	possibly_damaging(0.791)	deleterious(0.04)	deleterious(0.645)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ESF1	51575	genome.wustl.edu	37	20	13695803	13695803	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016649.3	-1	provisional	p.N758	0.002	191	0.5%	116	22.4%	17	41.1%	-	-	-	NULL
C20orf7	79133	genome.wustl.edu	37	20	13779136	13779136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024120.4	+1	reviewed	p.A170V	1.000	663	0%	343	19.8%	20	35%	benign(0.004)	tolerated(1)	-	HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SEL1L2	80343	genome.wustl.edu	37	20	13846058	13846058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025229.1	-1	validated	p.A503T	1.000	397	0%	104	25%	0	-	probably_damaging(0.979)	tolerated(0.47)	neutral(0.433)	superfamily_SSF81901
SEL1L2	80343	genome.wustl.edu	37	20	13850183	13850183	+	Silent	SNP	G	G	A	rs189965456	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000475649	-1	known	p.P33L	0.991	327	0%	141	17.7%	1	0%	-	-	-	superfamily_HCP-like
MACROD2	140733	genome.wustl.edu	37	20	15967743	15967743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080676.5	+1	validated	p.V365M	0.022	492	0%	262	18.7%	6	66.6%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
KIF16B	55614	genome.wustl.edu	37	20	16359927	16359927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024704.3	-1	validated	p.R907H	0.997	201	0%	90	25.6%	4	25%	possibly_damaging(0.951)	tolerated(0.13)	deleterious(0.647)	NULL
KIF16B	55614	genome.wustl.edu	37	20	16485144	16485144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024704.3	-1	validated	p.R350H	1.000	499	0%	147	17.7%	0	-	unknown(0)	deleterious(0.02)	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF16B	55614	genome.wustl.edu	37	20	16486737	16486737	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024704.3	-1	validated	p.G266	0.995	105	0%	25	24%	4	0%	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
DSTN	11034	genome.wustl.edu	37	20	17585251	17585251	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006870.3	+1	reviewed	p.K121	1.000	508	0%	219	21.9%	251	38.6%	-	-	-	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
RRBP1	6238	genome.wustl.edu	37	20	17594840	17594840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042576.1	-1	reviewed	p.G974D	1.000	185	0%	190	21.1%	185	4.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RRBP1	6238	genome.wustl.edu	37	20	17596647	17596647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042576.1	-1	reviewed	p.T859M	0.003	87	0%	59	33.9%	178	50.5%	probably_damaging(0.984)	tolerated(0.07)	deleterious(0.750)	NULL
RRBP1	6238	genome.wustl.edu	37	20	17602338	17602338	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042576.1	-1	reviewed	p.S674	0.018	69	0%	58	20.7%	102	22.5%	-	-	-	NULL
RRBP1	6238	genome.wustl.edu	37	20	17605248	17605248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042576.1	-1	reviewed	p.E607D	1.000	74	1.4%	85	18.8%	134	5.9%	possibly_damaging(0.9)	tolerated(0.3)	neutral(0.385)	NULL
RRBP1	6238	genome.wustl.edu	37	20	17617273	17617273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042576.1	-1	reviewed	p.M329I	1.000	68	0%	56	39.3%	119	4.2%	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
RRBP1	6238	genome.wustl.edu	37	20	17623773	17623773	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042576.1	-1	reviewed	e3-1	0.904	101	1%	84	32.1%	0	-	-	-	-	-
SNX5	27131	genome.wustl.edu	37	20	17934737	17934737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014426.2	-1	reviewed	p.D98N	1.000	454	0%	275	18.5%	99	48.4%	probably_damaging(0.997)	tolerated(0.11)	deleterious(0.738)	HMMPfam_PX,superfamily_PX domain
C20orf72	92667	genome.wustl.edu	37	20	17968818	17968818	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052865.2	+1	predicted	p.L247	1.000	203	0%	151	19.2%	19	26.3%	-	-	-	NULL
CSRP2BP	57325	genome.wustl.edu	37	20	18162388	18162388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020536.4	+1	reviewed	p.Q569R	1.000	346	0%	195	13.8%	29	27.5%	benign(0.143)	tolerated(0.26)	neutral(0.046)	NULL
ZNF133	7692	genome.wustl.edu	37	20	18295757	18295757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001083330.1	+1	validated	p.G87C	0.125	139	0.7%	110	18.2%	10	30%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
DZANK1	55184	genome.wustl.edu	37	20	18374962	18374962	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000358866	-1	known	p.A347V	0.153	83	0%	55	27.3%	1	0%	-	-	-	NULL
SLC24A3	57419	genome.wustl.edu	37	20	19701695	19701695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020689.3	+1	validated	p.L616I	0.995	211	0.5%	227	23.3%	0	-	benign(0.006)	tolerated(1)	-	HMMPfam_Na_Ca_ex
SLC24A3	57419	genome.wustl.edu	37	20	19701771	19701771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020689.3	+1	validated	p.C641Y	1.000	221	0%	210	24.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RIN2	54453	genome.wustl.edu	37	20	19970736	19970736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018993.2	+1	reviewed	p.A617S	0.986	89	0%	44	36.4%	7	42.8%	benign(0.084)	tolerated(0.73)	neutral(0.007)	superfamily_VPS9 domain (Pfam 02204)
NAA20	51126	genome.wustl.edu	37	20	20013241	20013241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016100.3	+1	validated	p.R132K	1.000	247	0%	115	19.1%	173	42.1%	benign(0.082)	deleterious(0.03)	neutral(0.370)	superfamily_Acyl-CoA N-acyltransferases (Nat)
CRNKL1	51340	genome.wustl.edu	37	20	20022249	20022249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016652.4	-1	reviewed	p.Q556H	0.988	331	0.3%	184	30.4%	26	26.9%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	HMMPfam_HAT,HMMSmart_SM00386,superfamily_TPR-like
CRNKL1	51340	genome.wustl.edu	37	20	20023121	20023121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016652.4	-1	reviewed	p.R499C	1.000	262	0%	158	17.1%	36	38.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
C20orf26	26074	genome.wustl.edu	37	20	20168690	20168690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015585.3	+1	validated	p.R501H	0.788	217	0%	134	23.9%	0	-	benign(0.097)	deleterious(0.03)	neutral(0.372)	superfamily_Acyl-CoA N-acyltransferases (Nat)
RALGAPA2	57186	genome.wustl.edu	37	20	20552121	20552121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020343.2	-1	validated	p.G1046E	1.000	140	0%	29	17.2%	1	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
XRN2	22803	genome.wustl.edu	37	20	21306957	21306957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012255.3	+1	reviewed	p.S39N	1.000	342	0%	150	18%	15	13.3%	possibly_damaging(0.501)	deleterious(0.01)	deleterious(0.573)	HMMPfam_XRN_N
XRN2	22803	genome.wustl.edu	37	20	21311340	21311340	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012255.3	+1	reviewed	p.L191	1.000	296	0%	95	18.9%	12	41.6%	-	-	-	HMMPfam_XRN_N
CST9	128822	genome.wustl.edu	37	20	23584356	23584356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008693.2	-1	reviewed	p.V91M	0.001	286	0%	161	21.1%	0	-	possibly_damaging(0.888)	deleterious(0.02)	deleterious(0.730)	superfamily_SSF54403
CST3	1471	genome.wustl.edu	37	20	23614559	23614559	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000099.2	-1	reviewed	p.D145	0.000	144	0%	162	24.7%	1616	24.3%	-	-	-	superfamily_SSF54403
SYNDIG1	79953	genome.wustl.edu	37	20	24646036	24646036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024893.1	+1	provisional	p.R225W	1.000	105	0%	79	17.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_CD225
CST7	8530	genome.wustl.edu	37	20	24930181	24930181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003650.3	+1	reviewed	p.V36I	0.000	45	0%	38	15.8%	83	0%	benign(0.01)	tolerated(0.3)	neutral(0.029)	NULL
ACSS1	84532	genome.wustl.edu	37	20	24989966	24989966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032501.2	-1	reviewed	p.Q610H	0.002	277	0%	201	26.9%	20	20%	benign(0.186)	deleterious(0)	neutral(0.462)	superfamily_Acetyl-CoA synthetase-like
ENTPD6	955	genome.wustl.edu	37	20	25198212	25198212	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000433417	+1	known	p.P212H	0.979	153	0%	133	25.6%	39	30.7%	-	-	-	HMMPfam_GDA1_CD39
PYGB	5834	genome.wustl.edu	37	20	25262699	25262699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002862.3	+1	reviewed	p.E478D	0.996	136	0%	135	25.2%	38	47.3%	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_Phosphorylase,superfamily_SSF53756
ABHD12	26090	genome.wustl.edu	37	20	25290081	25290081	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015600.3	-1	validated	e7+1	1.000	91	0%	83	21.7%	1	100%	-	-	-	-
GINS1	9837	genome.wustl.edu	37	20	25394462	25394462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021067.3	+1	validated	p.A38T	1.000	464	0%	262	18.7%	9	66.6%	benign(0.001)	tolerated(0.32)	neutral(0.024)	HMMPfam_Psf1
GINS1	9837	genome.wustl.edu	37	20	25398785	25398785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021067.3	+1	validated	p.G95D	1.000	556	0%	264	22.7%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Psf1
NINL	22981	genome.wustl.edu	37	20	25460820	25460820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025176.4	-1	validated	p.L632I	0.981	347	0%	405	21.5%	8	62.5%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
NINL	22981	genome.wustl.edu	37	20	25470611	25470611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025176.4	-1	validated	p.R499H	0.894	343	0%	307	24.8%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DEFB115	245929	genome.wustl.edu	37	20	29847310	29847310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037730.1	+1	provisional	p.S48P	0.001	330	0%	160	15%	0	-	possibly_damaging(0.811)	tolerated(0.12)	deleterious(0.566)	NULL
DEFB116	245930	genome.wustl.edu	37	20	29891201	29891201	+	Missense_Mutation	SNP	C	C	A	rs56076812	byCluster;byFrequency;by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037731.1	-1	provisional	p.E41D	0.764	613	0%	173	24.3%	0	-	possibly_damaging(0.478)	tolerated(0.13)	neutral(0.410)	NULL
DEFB124	245937	genome.wustl.edu	37	20	30053325	30053325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037500.1	-1	provisional	p.K67T	0.001	318	0%	343	14.3%	0	-	benign(0.276)	deleterious(0)	deleterious(0.474)	NULL
HM13	81502	genome.wustl.edu	37	20	30137132	30137132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178581.1	+1	reviewed	p.F221L	1.000	135	0%	109	18.3%	272	39.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PSN,HMMPfam_Peptidase_A22B
HM13	81502	genome.wustl.edu	37	20	30154020	30154020	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178581.1	+1	reviewed	p.L319H	1.000	246	0.4%	258	22.1%	387	33.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PSN,HMMPfam_Peptidase_A22B
HM13	81502	genome.wustl.edu	37	20	30156994	30156994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178581.1	+1	reviewed	p.S418L	0.003	114	0%	122	21.3%	379	33.5%	benign(0.011)	tolerated(0.06)	neutral(0.323)	NULL
TPX2	22974	genome.wustl.edu	37	20	30347859	30347859	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012112.4	+1	validated	e2-1	1.000	615	0%	299	21.7%	0	-	-	-	-	-
TPX2	22974	genome.wustl.edu	37	20	30371605	30371605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012112.4	+1	validated	p.G432S	1.000	264	0.4%	159	21.4%	36	66.6%	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	NULL
MYLK2	85366	genome.wustl.edu	37	20	30418652	30418652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033118.3	+1	reviewed	p.G419R	0.979	124	0.8%	127	15%	0	-	possibly_damaging(0.496)	deleterious(0.01)	deleterious(0.571)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
FOXS1	2307	genome.wustl.edu	37	20	30432740	30432740	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004118.3	-1	reviewed	p.C202	0.009	70	0%	104	22.1%	6	0%	-	-	-	NULL
DUSP15	128853	genome.wustl.edu	37	20	30451775	30451775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080611.3	-1	reviewed	p.H66Q	1.000	287	0%	268	18.3%	4	0%	possibly_damaging(0.787)	deleterious(0.01)	deleterious(0.700)	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
XKR7	343702	genome.wustl.edu	37	20	30584712	30584712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001011718.1	+1	provisional	p.L398F	0.998	61	0%	53	20.8%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_XK-related
KIF3B	9371	genome.wustl.edu	37	20	30898889	30898889	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004798.2	+1	reviewed	p.E437*	1.000	456	0%	151	27.2%	7	14.2%	-	-	-	NULL
KIF3B	9371	genome.wustl.edu	37	20	30904422	30904422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004798.2	+1	reviewed	p.E533D	1.000	259	0.4%	69	15.9%	5	20%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ASXL1	171023	genome.wustl.edu	37	20	31016037	31016037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015338.5	+1	reviewed	p.S120N	1.000	453	0%	303	27.1%	5	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
C20orf112	140688	genome.wustl.edu	37	20	31035538	31035538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080616.3	-1	validated	p.S391N	1.000	92	0%	48	18.8%	9	0%	benign(0.002)	tolerated(0.23)	neutral(0.042)	NULL
DNMT3B	1789	genome.wustl.edu	37	20	31375041	31375041	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006892.3	+1	reviewed	p.L146	0.901	95	0%	52	32.7%	1	100%	-	-	-	NULL
MAPRE1	22919	genome.wustl.edu	37	20	31413784	31413784	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012325.2	+1	reviewed	p.R17	1.000	456	0%	339	11.8%	58	27.5%	-	-	-	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain
SUN5	140732	genome.wustl.edu	37	20	31573594	31573594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080675.3	-1	validated	p.T282I	1.000	324	0%	231	17.3%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Sad1_UNC
BPIFB2	80341	genome.wustl.edu	37	20	31611153	31611153	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025227.1	+1	reviewed	p.Y447	0.008	115	0.9%	72	25%	0	-	-	-	-	HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI
BPIFB6	128859	genome.wustl.edu	37	20	31619523	31619523	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174897.2	+1	validated	p.L24	0.997	45	0%	45	15.6%	0	-	-	-	-	HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom
BPIFB6	128859	genome.wustl.edu	37	20	31623476	31623476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174897.2	+1	validated	p.S192N	0.000	221	0%	154	17.5%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom
BPIFA2	140683	genome.wustl.edu	37	20	31767446	31767446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080574.2	+1	validated	p.D228N	0.000	512	0%	396	16.9%	0	-	possibly_damaging(0.949)	tolerated(0.75)	neutral(0.395)	superfamily_Bactericidal_perm-incr_a/b_dom
NECAB3	63941	genome.wustl.edu	37	20	32247443	32247443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031232.3	-1	reviewed	p.P247S	0.004	18	0%	17	29.4%	1	100%	benign(0.087)	tolerated(0.72)	neutral(0.008)	NULL
E2F1	1869	genome.wustl.edu	37	20	32265137	32265137	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005225.2	-1	reviewed	e6-1	1.000	228	0%	361	23%	1	0%	-	-	-	-
PXMP4	11264	genome.wustl.edu	37	20	32295732	32295732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007238.4	-1	validated	p.R140H	1.000	79	0%	63	22.2%	13	38.4%	benign(0.162)	tolerated(0.06)	neutral(0.337)	HMMPfam_Pmp24
ZNF341	84905	genome.wustl.edu	37	20	32357901	32357901	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032819.3	+1	validated	p.C468	0.998	98	0%	51	15.7%	8	25%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CHMP4B	128866	genome.wustl.edu	37	20	32436328	32436328	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_176812.4	+1	reviewed	p.I82	0.566	108	0%	77	32.5%	314	41%	-	-	-	HMMPfam_Snf7
EIF2S2	8894	genome.wustl.edu	37	20	32693352	32693352	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003908.3	-1	reviewed	e2-1	1.000	359	0%	278	14.4%	1	100%	-	-	-	-
AHCY	191	genome.wustl.edu	37	20	32868861	32868861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000687.2	-1	reviewed	p.K426N	0.998	147	0%	124	15.3%	510	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AdoHcyase,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
NCOA6	23054	genome.wustl.edu	37	20	33328238	33328238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014071.2	-1	reviewed	p.A1941V	0.986	174	0%	73	23.3%	25	24%	benign(0.002)	tolerated(0.17)	neutral(0.059)	NULL
GGT7	2686	genome.wustl.edu	37	20	33444545	33444545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000253380	-1	known	p.S106L	0.001	121	0%	93	23.7%	0	-	-	-	-	NULL
ACSS2	55902	genome.wustl.edu	37	20	33508433	33508433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018677.3	+1	reviewed	p.C355Y	1.000	300	0%	118	9.3%	22	4.5%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_AMP-binding,superfamily_SSF56801
ACSS2	55902	genome.wustl.edu	37	20	33513537	33513537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018677.3	+1	reviewed	p.T565N	1.000	515	0%	260	23.1%	48	45.8%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_AMP-binding,superfamily_SSF56801
MYH7B	57644	genome.wustl.edu	37	20	33578556	33578556	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020884.3	+1	reviewed	p.L707	1.000	230	0%	199	27.1%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH7B	57644	genome.wustl.edu	37	20	33586130	33586130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020884.3	+1	reviewed	p.E1302D	1.000	93	0%	84	20.2%	0	-	probably_damaging(0.988)	deleterious(0.05)	deleterious(0.783)	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
TRPC4AP	26133	genome.wustl.edu	37	20	33591288	33591288	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015638.2	-1	validated	p.N727	1.000	44	0%	47	31.9%	132	36.3%	-	-	-	NULL
EDEM2	55741	genome.wustl.edu	37	20	33719538	33719538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018217.2	-1	validated	p.A251T	1.000	102	0%	39	20.5%	31	32.2%	probably_damaging(0.973)	tolerated(0.39)	neutral(0.431)	HMMPfam_Glyco_hydro_47,superfamily_Seven-hairpin glycosidases
MMP24	10893	genome.wustl.edu	37	20	33859419	33859419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006690.3	+1	reviewed	p.P461S	1.000	105	0%	82	19.5%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
EIF6	3692	genome.wustl.edu	37	20	33868458	33868458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002212.2	-1	reviewed	p.R123M	1.000	196	0%	208	26.4%	406	46.7%	benign(0.005)	deleterious(0.01)	neutral(0.406)	HMMPfam_eIF-6,HMMSmart_SM00654,superfamily_Pentein
EIF6	3692	genome.wustl.edu	37	20	33868626	33868626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002212.2	-1	reviewed	p.R67M	1.000	386	0.3%	460	15%	375	37.3%	possibly_damaging(0.676)	deleterious(0)	deleterious(0.685)	HMMPfam_eIF-6,HMMSmart_SM00654,superfamily_Pentein
FAM83C	128876	genome.wustl.edu	37	20	33879807	33879807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178468.4	-1	validated	p.G101R	0.812	34	0%	39	25.6%	0	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMPfam_DUF1669
CEP250	11190	genome.wustl.edu	37	20	34090238	34090238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007186.3	+1	reviewed	p.Q1347H	0.613	77	0%	28	21.4%	6	16.6%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
CEP250	11190	genome.wustl.edu	37	20	34091280	34091280	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007186.3	+1	reviewed	p.R1695*	0.694	123	0%	85	22.4%	23	4.3%	-	-	-	NULL
SPAG4	6676	genome.wustl.edu	37	20	34205458	34205458	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003116.1	+1	reviewed	p.G142	1.000	54	0%	83	24.1%	13	15.3%	-	-	-	NULL
RBM12	10137	genome.wustl.edu	37	20	34240546	34240546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006047.4	-1	reviewed	p.A900V	1.000	181	0%	253	27.3%	46	32.6%	unknown(0)	deleterious(0)	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RBM39	9584	genome.wustl.edu	37	20	34313054	34313054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_184234.1	-1	reviewed	p.P147H	1.000	290	0%	134	23.1%	72	34.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNA-binding domain RBD
RBM39	9584	genome.wustl.edu	37	20	34319878	34319878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_184234.1	-1	reviewed	p.R94H	1.000	344	0%	253	22.1%	56	35.7%	unknown(0)	tolerated(0.29)	-	NULL
PHF20	51230	genome.wustl.edu	37	20	34435357	34435357	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016436.4	+1	validated	e3+1	1.000	562	0%	228	21.1%	0	-	-	-	-	-
C20orf152	140894	genome.wustl.edu	37	20	34568467	34568467	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080834.1	+1	predicted	p.I110	0.000	121	0%	93	11.8%	1	0%	-	-	-	superfamily_cNMP_binding
C20orf152	140894	genome.wustl.edu	37	20	34618446	34618446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080834.1	+1	predicted	p.S532I	0.001	391	0%	155	15.5%	5	40%	possibly_damaging(0.895)	deleterious(0)	deleterious(0.797)	NULL
DLGAP4	22839	genome.wustl.edu	37	20	35061015	35061015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014902.4	+1	reviewed	p.L299I	1.000	36	0%	52	23.1%	0	-	probably_damaging(0.974)	deleterious(0.03)	deleterious(0.780)	NULL
DLGAP4	22839	genome.wustl.edu	37	20	35068238	35068238	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014902.4	+1	reviewed	p.S441	0.973	94	0%	85	21.2%	0	-	-	-	-	NULL
DLGAP4	22839	genome.wustl.edu	37	20	35152667	35152667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014902.4	+1	reviewed	p.L840I	1.000	221	0%	187	16%	39	7.6%	probably_damaging(0.96)	tolerated(0.06)	deleterious(0.726)	HMMPfam_GKAP
TGIF2	60436	genome.wustl.edu	37	20	35219735	35219735	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021809.5	+1	reviewed	p.A205	0.104	60	0%	60	31.7%	26	38.4%	-	-	-	NULL
NDRG3	57446	genome.wustl.edu	37	20	35315985	35315985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032013.2	-1	validated	p.F77S	1.000	238	0.4%	130	24.6%	37	37.8%	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases
SOGA1	140710	genome.wustl.edu	37	20	35414988	35414988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000237536	-1	known	p.S1629L	0.520	159	0%	121	22.3%	6	33.3%	benign(0.052)	deleterious(0.01)	neutral(0.409)	NULL
ENSG00000250861	0	genome.wustl.edu	37	20	35423025	35423025	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000509795	+1	novel	NULL	0.000	54	0%	61	19.7%	0	-	-	-	-	-
RBL1	5933	genome.wustl.edu	37	20	35661095	35661095	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002895.2	-1	reviewed	p.T785	1.000	512	0%	242	19%	3	0%	-	-	-	NULL
RBL1	5933	genome.wustl.edu	37	20	35672548	35672548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002895.2	-1	reviewed	p.D571N	0.384	359	0%	244	26.2%	5	60%	benign(0.001)	tolerated(0.45)	neutral(0.012)	HMMPfam_RB_A,superfamily_Cyclin-like
RBL1	5933	genome.wustl.edu	37	20	35696404	35696404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002895.2	-1	reviewed	p.R159Q	1.000	184	0%	354	19.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C20orf132	140699	genome.wustl.edu	37	20	35748236	35748236	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152503.4	-1	validated	p.P746S	0.992	127	0%	119	20.2%	1	100%	-	-	-	NULL
SRC	6714	genome.wustl.edu	37	20	36014499	36014499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005417.3	+1	reviewed	p.A91V	1.000	167	0%	210	24.3%	12	66.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
NNAT	4826	genome.wustl.edu	37	20	36151076	36151076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005386.2	+1	reviewed	p.R54M	1.000	36	0%	46	19.6%	0	-	possibly_damaging(0.928)	deleterious(0)	deleterious(0.820)	NULL
CTNNBL1	56259	genome.wustl.edu	37	20	36488303	36488303	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030877.3	+1	reviewed	p.D465	1.000	110	0%	87	28.7%	131	35.8%	-	-	-	superfamily_ARM repeat
TTI1	9675	genome.wustl.edu	37	20	36625218	36625218	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014657.1	-1	predicted	p.T977	0.054	71	0%	55	20%	31	32.2%	-	-	-	superfamily_ARM-type_fold
TTI1	9675	genome.wustl.edu	37	20	36641644	36641644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014657.1	-1	predicted	p.R192M	0.000	153	0%	138	13%	3	0%	possibly_damaging(0.716)	tolerated(0.09)	deleterious(0.555)	superfamily_ARM-type_fold
KIAA1755	85449	genome.wustl.edu	37	20	36869662	36869662	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001029864.1	-1	predicted	p.S291R	0.000	206	0%	152	19.1%	4	0%	possibly_damaging(0.531)	deleterious(0.02)	deleterious(0.562)	NULL
BPI	671	genome.wustl.edu	37	20	36932611	36932611	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000418004	+1	known	p.R83W	0.883	24	0%	20	25%	0	-	unknown(0)	-	-	NULL
ARHGAP40	343578	genome.wustl.edu	37	20	37267443	37267443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000373345	+1	known	p.G308C	1.000	297	0%	179	24%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
ARHGAP40	343578	genome.wustl.edu	37	20	37272389	37272389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000373345	+1	known	p.H416Y	0.572	111	0%	124	19.4%	0	-	benign(0.304)	deleterious(0.01)	deleterious(0.500)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
ARHGAP40	343578	genome.wustl.edu	37	20	37278420	37278420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000373345	+1	known	p.D600Y	1.000	552	0%	316	21.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACTR5	79913	genome.wustl.edu	37	20	37378856	37378856	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024855.3	+1	validated	p.T193	0.213	426	0%	489	23.3%	13	23%	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
PPP1R16B	26051	genome.wustl.edu	37	20	37547179	37547179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015568.2	+1	reviewed	p.T525I	1.000	142	0%	94	22.3%	1	0%	probably_damaging(0.964)	deleterious(0.04)	deleterious(0.755)	NULL
FAM83D	81610	genome.wustl.edu	37	20	37570769	37570769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030919.2	+1	validated	p.K247N	1.000	298	0%	167	21%	11	72.7%	probably_damaging(0.965)	tolerated(0.11)	deleterious(0.678)	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease
PLCG1	5335	genome.wustl.edu	37	20	39792069	39792069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002660.2	+1	reviewed	p.L281I	1.000	67	1.5%	61	23%	14	57.1%	probably_damaging(0.981)	tolerated(0.52)	neutral(0.434)	superfamily_SSF47473
PLCG1	5335	genome.wustl.edu	37	20	39794302	39794302	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002660.2	+1	reviewed	p.H545	1.000	143	0%	75	29.3%	26	30.7%	-	-	-	HMMSmart_PH,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729,superfamily_SSF55550
PLCG1	5335	genome.wustl.edu	37	20	39794454	39794454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002660.2	+1	reviewed	p.T596M	1.000	49	0%	33	18.2%	21	28.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SH2,HMMSmart_SH2,HMMSmart_PH,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729,superfamily_SSF55550
CHD6	84181	genome.wustl.edu	37	20	40033675	40033675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032221.3	-1	reviewed	p.A2569V	0.007	152	0.7%	131	19.1%	17	23.5%	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
CHD6	84181	genome.wustl.edu	37	20	40042150	40042150	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032221.3	-1	reviewed	p.V2315	0.996	49	0%	41	17.1%	10	30%	-	-	-	NULL
CHD6	84181	genome.wustl.edu	37	20	40050388	40050388	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032221.3	-1	reviewed	p.L1629	0.974	224	0%	95	13.7%	4	0%	-	-	-	NULL
CHD6	84181	genome.wustl.edu	37	20	40068712	40068712	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032221.3	-1	reviewed	p.V1312D	0.998	251	0%	86	16.3%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SRSF6	6431	genome.wustl.edu	37	20	42088728	42088728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006275.5	+1	reviewed	p.T146I	1.000	661	0%	678	21.5%	99	38.3%	benign(0.238)	tolerated(0.11)	neutral(0.296)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
LOC100287002	100287002	genome.wustl.edu	37	20	42089338	42089338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343704.1	-1	model	p.D306G	0.993	242	0%	210	15.2%	0	-	-	-	-	NULL
L3MBTL1	26013	genome.wustl.edu	37	20	42168802	42168802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015478.5	+1	reviewed	p.D639N	0.766	118	0%	81	16%	3	100%	possibly_damaging(0.604)	tolerated(0.24)	neutral(0.247)	NULL
MYBL2	4605	genome.wustl.edu	37	20	42320917	42320917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002466.2	+1	reviewed	p.E207D	1.000	68	0%	34	17.6%	62	24.1%	benign(0.009)	tolerated(0.61)	neutral(0.005)	NULL
STK4	6789	genome.wustl.edu	37	20	43610583	43610583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006282.2	+1	reviewed	p.T120M	1.000	521	0%	306	24.5%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SEMG2	6407	genome.wustl.edu	37	20	43850490	43850490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003008.2	+1	reviewed	p.I73V	0.000	495	0.2%	243	21.8%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Semenogelin
PIGT	51604	genome.wustl.edu	37	20	44045191	44045191	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015937.4	+1	reviewed	p.G74	0.989	64	0%	104	22.1%	52	44.2%	-	-	-	HMMPfam_Gpi16
PIGT	51604	genome.wustl.edu	37	20	44047897	44047897	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000372689	+1	known	p.S8	0.000	72	0%	81	21%	0	-	-	-	-	HMMPfam_Gpi16
PIGT	51604	genome.wustl.edu	37	20	44053136	44053136	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015937.4	+1	reviewed	p.S467	1.000	124	0%	132	25%	189	35.9%	-	-	-	HMMPfam_Gpi16
DNTTIP1	116092	genome.wustl.edu	37	20	44431987	44431987	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000456939	+1	known	p.L142M	1.000	233	0%	143	23.8%	63	42.8%	-	-	-	NULL
TNNC2	7125	genome.wustl.edu	37	20	44452767	44452767	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003279.2	-1	reviewed	e5-1	1.000	89	0%	83	28.9%	0	-	-	-	-	-
ZSWIM1	90204	genome.wustl.edu	37	20	44511971	44511971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080603.4	+1	validated	p.S247N	0.973	44	0%	32	34.4%	16	62.5%	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	NULL
SPATA25	128497	genome.wustl.edu	37	20	44516213	44516213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080608.3	-1	validated	p.T6N	1.000	175	0%	193	23.8%	0	-	benign(0.013)	deleterious(0.03)	neutral(0.365)	NULL
CTSA	5476	genome.wustl.edu	37	20	44521484	44521484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000308.2	+1	reviewed	p.V207M	0.026	167	0%	189	22.2%	182	41.7%	benign(0.012)	tolerated(0.06)	neutral(0.323)	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
CTSA	5476	genome.wustl.edu	37	20	44525655	44525655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000308.2	+1	reviewed	p.Q398H	1.000	108	0%	79	24.1%	343	31.4%	benign(0.322)	tolerated(0.17)	neutral(0.160)	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
PLTP	5360	genome.wustl.edu	37	20	44538234	44538234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006227.2	-1	reviewed	p.A136T	0.000	64	1.6%	55	30.9%	176	25%	benign(0)	tolerated(0.34)	neutral(0.023)	HMMPfam_LBP_BPI_CETP,HMMSmart_SM00328,superfamily_Bactericidal permeability-increasing protein BPI
PCIF1	63935	genome.wustl.edu	37	20	44572322	44572322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022104.3	+1	validated	p.S308I	1.000	61	1.6%	38	23.7%	38	36.8%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
PCIF1	63935	genome.wustl.edu	37	20	44574947	44574947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022104.3	+1	validated	p.A513T	1.000	122	0%	145	20%	108	41.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF335	63925	genome.wustl.edu	37	20	44586251	44586251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022095.3	-1	reviewed	p.R806W	1.000	66	0%	69	23.2%	13	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC12A5	57468	genome.wustl.edu	37	20	44663639	44663639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134771.1	+1	reviewed	p.E58D	1.000	431	0%	339	28.6%	0	-	benign(0.001)	tolerated(0.32)	neutral(0.024)	NULL
SLC12A5	57468	genome.wustl.edu	37	20	44680391	44680391	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001134771.1	+1	reviewed	p.G776	1.000	152	0%	192	12.5%	0	-	-	-	-	NULL
NCOA5	57727	genome.wustl.edu	37	20	44708029	44708029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020967.2	-1	reviewed	p.R12Q	1.000	608	0%	441	20.6%	5	60%	unknown(0)	deleterious(0.01)	-	NULL
CD40	958	genome.wustl.edu	37	20	44757025	44757025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000372278	+1	known	p.R10K	0.000	174	0%	159	25.2%	0	-	unknown(0)	-	-	NULL
CDH22	64405	genome.wustl.edu	37	20	44845580	44845580	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021248.1	-1	reviewed	p.Y241	0.992	58	0%	58	31%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
SLC35C2	51006	genome.wustl.edu	37	20	44983597	44983597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015945.10	-1	reviewed	p.Q195H	1.000	75	0%	56	21.4%	63	34.9%	benign(0.002)	tolerated(0.76)	neutral(0.001)	HMMPfam_TPT
SLC35C2	51006	genome.wustl.edu	37	20	44986386	44986386	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015945.10	-1	reviewed	p.T49	0.463	162	0%	123	23.6%	36	19.4%	-	-	-	NULL
ZNF334	55713	genome.wustl.edu	37	20	45130187	45130187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018102.3	-1	validated	p.E597D	1.000	325	0%	193	19.7%	2	0%	possibly_damaging(0.833)	deleterious(0.02)	deleterious(0.701)	superfamily_SSF57667
ZNF334	55713	genome.wustl.edu	37	20	45133370	45133370	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018102.3	-1	validated	p.S11A	0.159	286	0%	216	22.2%	0	-	benign(0.097)	deleterious(0.01)	neutral(0.413)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
SLC13A3	64849	genome.wustl.edu	37	20	45192082	45192082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022829.4	-1	reviewed	p.A535T	0.999	79	0%	62	16.1%	0	-	benign(0.047)	tolerated(0.06)	neutral(0.326)	HMMPfam_Na_sulph_symp
SLC13A3	64849	genome.wustl.edu	37	20	45192104	45192104	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022829.4	-1	reviewed	p.T527	0.614	77	0%	56	21.4%	1	0%	-	-	-	HMMPfam_Na_sulph_symp
SLC2A10	81031	genome.wustl.edu	37	20	45354077	45354077	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030777.3	+1	reviewed	p.V134	0.991	54	0%	49	22.4%	1	0%	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
EYA2	2139	genome.wustl.edu	37	20	45725779	45725779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005244.4	+1	reviewed	p.T287M	1.000	557	0%	212	25.9%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hydrolase
NCOA3	8202	genome.wustl.edu	37	20	46277770	46277770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181659.2	+1	reviewed	p.A1190S	1.000	270	0%	126	32.5%	3	0%	benign(0.389)	tolerated(0.19)	neutral(0.174)	NULL
PREX1	57580	genome.wustl.edu	37	20	47246159	47246159	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020820.3	-1	reviewed	p.L1532	1.000	81	0%	101	16.8%	38	2.6%	-	-	-	NULL
PREX1	57580	genome.wustl.edu	37	20	47249138	47249138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020820.3	-1	reviewed	p.A1436V	0.958	68	0%	66	16.7%	23	0%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
PREX1	57580	genome.wustl.edu	37	20	47274752	47274752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020820.3	-1	reviewed	p.E632D	1.000	193	0.5%	126	15.1%	10	0%	benign(0.001)	tolerated(0.22)	neutral(0.042)	"superfamily_PDZ domain-like,superfamily_""Winged helix"" DNA-binding domain"
CSE1L	1434	genome.wustl.edu	37	20	47691917	47691917	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001316.2	+1	reviewed	p.G399*	1.000	363	0%	184	22.3%	21	0%	-	-	-	HMMPfam_Cse1,superfamily_ARM repeat
CSE1L	1434	genome.wustl.edu	37	20	47701839	47701839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001316.2	+1	reviewed	p.A547T	1.000	310	0%	93	23.7%	30	86.6%	benign(0.011)	tolerated(0.24)	neutral(0.038)	HMMPfam_CAS_CSE1,superfamily_ARM repeat
ZNFX1	57169	genome.wustl.edu	37	20	47865195	47865195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021035.2	-1	validated	p.R1456C	1.000	108	0%	31	22.6%	15	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-NF-X1
ZNFX1	57169	genome.wustl.edu	37	20	47887529	47887529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021035.2	-1	validated	p.P274S	1.000	303	0.3%	224	12.9%	2	0%	possibly_damaging(0.643)	tolerated(0.41)	neutral(0.240)	NULL
KCNB1	3745	genome.wustl.edu	37	20	48098666	48098666	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004975.2	-1	reviewed	p.E118*	1.000	123	0%	161	16.1%	0	-	-	-	-	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
SLC9A8	23315	genome.wustl.edu	37	20	48431694	48431694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015266.1	+1	validated	p.G59V	1.000	175	0%	223	23.3%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RNF114	55905	genome.wustl.edu	37	20	48558140	48558140	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000434441	+1	known	e2+1	0.982	181	0%	148	24.3%	101	37.6%	benign(0.084)	tolerated(0.31)	neutral(0.033)	-
FAM65C	140876	genome.wustl.edu	37	20	49211099	49211099	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080829.2	-1	predicted	p.L731	0.998	80	0%	98	25.5%	2	0%	-	-	-	NULL
FAM65C	140876	genome.wustl.edu	37	20	49211905	49211905	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080829.2	-1	predicted	e15+1	1.000	90	0%	108	18.5%	0	-	-	-	-	-
FAM65C	140876	genome.wustl.edu	37	20	49221269	49221269	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080829.2	-1	predicted	p.T329	0.010	123	0%	113	23.9%	1	0%	-	-	-	NULL
ADNP	23394	genome.wustl.edu	37	20	49508242	49508242	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015339.2	-1	reviewed	p.S1003	1.000	201	0%	73	24.7%	84	45.2%	-	-	-	NULL
ADNP	23394	genome.wustl.edu	37	20	49508814	49508814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015339.2	-1	reviewed	p.R813C	1.000	417	0%	170	24.1%	35	28.5%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ADNP	23394	genome.wustl.edu	37	20	49510335	49510335	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015339.2	-1	reviewed	p.R306*	1.000	440	0%	138	18.8%	29	51.7%	-	-	-	NULL
ADNP	23394	genome.wustl.edu	37	20	49510613	49510613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015339.2	-1	reviewed	p.S213L	0.996	333	0%	90	22.2%	22	40.9%	possibly_damaging(0.685)	tolerated(0.22)	neutral(0.286)	NULL
ATP9A	10079	genome.wustl.edu	37	20	50217858	50217858	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006045.1	-1	validated	p.F1012	1.000	209	0%	100	22%	24	45.8%	-	-	-	NULL
ATP9A	10079	genome.wustl.edu	37	20	50226673	50226673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006045.1	-1	validated	p.S868Y	1.000	443	0.2%	199	23.1%	23	47.8%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ATP9A	10079	genome.wustl.edu	37	20	50273519	50273519	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006045.1	-1	validated	p.Y488	0.987	126	0%	98	12.2%	14	14.2%	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP9A	10079	genome.wustl.edu	37	20	50290753	50290753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006045.1	-1	validated	p.G326C	1.000	183	0%	84	31%	18	61.1%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	NULL
SALL4	57167	genome.wustl.edu	37	20	50405492	50405492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020436.3	-1	reviewed	p.A884T	1.000	137	0%	113	17.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SALL4	57167	genome.wustl.edu	37	20	50406872	50406872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020436.3	-1	reviewed	p.S717L	0.007	83	0%	74	25.7%	1	0%	benign(0.001)	tolerated(0.29)	neutral(0.029)	NULL
TSHZ2	128553	genome.wustl.edu	37	20	51872037	51872037	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173485.4	+1	validated	p.C680	0.018	44	0%	32	37.5%	2	50%	-	-	-	NULL
ZNF217	7764	genome.wustl.edu	37	20	52193534	52193534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006526.2	-1	validated	p.A590V	0.019	460	0%	308	23.7%	23	65.2%	benign(0.059)	deleterious(0.03)	neutral(0.368)	NULL
ZNF217	7764	genome.wustl.edu	37	20	52198399	52198399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006526.2	-1	validated	p.D323N	0.996	285	0%	309	20.7%	17	35.2%	probably_damaging(1)	tolerated(0.73)	deleterious(0.501)	NULL
ZNF217	7764	genome.wustl.edu	37	20	52199205	52199205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006526.2	-1	validated	p.K54R	0.008	258	0%	215	24.7%	14	28.5%	benign(0.092)	tolerated(0.16)	neutral(0.067)	NULL
LOC100287442	100287442	genome.wustl.edu	37	20	52789489	52789489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343711.1	+1	model	p.G115C	1.000	89	0%	111	25.2%	0	-	-	-	-	NULL
DOK5	55816	genome.wustl.edu	37	20	53208185	53208185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018431.3	+1	reviewed	p.P147H	1.000	482	0%	248	14.1%	1	0%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	HMMPfam_IRS,HMMSmart_SM00310,superfamily_PH domain-like
MC3R	4159	genome.wustl.edu	37	20	54823914	54823914	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019888.3	+1	reviewed	p.C5*	0.037	167	0%	87	28.7%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
MC3R	4159	genome.wustl.edu	37	20	54824256	54824256	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019888.3	+1	reviewed	p.I119	1.000	179	0%	82	22%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MC3R	4159	genome.wustl.edu	37	20	54824303	54824303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019888.3	+1	reviewed	p.L135P	1.000	197	0%	82	17.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
CSTF1	1477	genome.wustl.edu	37	20	54972476	54972476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001033521.1	+1	reviewed	p.A128D	1.000	253	0%	146	23.3%	18	16.6%	benign(0.011)	deleterious(0.02)	neutral(0.384)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CASS4	57091	genome.wustl.edu	37	20	55027676	55027676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020356.3	+1	validated	p.S482P	0.967	212	0%	142	17.6%	2	0%	benign(0.335)	deleterious(0.02)	deleterious(0.488)	HMMPfam_Serine_rich
C20orf43	51507	genome.wustl.edu	37	20	55052040	55052040	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016407.3	+1	validated	e4-1	1.000	172	0%	119	21%	1	0%	-	-	-	-
GCNT7	140687	genome.wustl.edu	37	20	55071931	55071931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000243913	-1	known	p.S123N	0.001	253	0%	163	20.9%	0	-	benign(0.055)	tolerated(0.43)	neutral(0.017)	HMMPfam_Branch
FAM209A	200232	genome.wustl.edu	37	20	55100100	55100100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012971.3	+1	validated	p.S79I	0.000	504	0%	208	26.9%	0	-	possibly_damaging(0.861)	tolerated(0.05)	deleterious(0.678)	NULL
TFAP2C	7022	genome.wustl.edu	37	20	55208488	55208488	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003222.3	+1	reviewed	p.E222	0.998	212	0%	244	25.4%	1	0%	-	-	-	HMMPfam_TF_AP-2
RBM38	55544	genome.wustl.edu	37	20	55967831	55967831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017495.4	+1	validated	p.T120M	1.000	88	0%	105	18.1%	56	32.1%	benign(0.179)	tolerated(0.15)	neutral(0.258)	NULL
CTCFL	140690	genome.wustl.edu	37	20	56098172	56098172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080618.2	-1	reviewed	p.A236T	0.000	709	0%	750	24.4%	0	-	benign(0.003)	tolerated(0.63)	neutral(0.004)	NULL
ZBP1	81030	genome.wustl.edu	37	20	56188380	56188380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030776.2	-1	validated	p.S170Y	0.001	312	0.3%	247	25.5%	10	0%	possibly_damaging(0.815)	tolerated(0.09)	deleterious(0.604)	NULL
ZBP1	81030	genome.wustl.edu	37	20	56195325	56195325	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030776.2	-1	validated	p.G9	0.000	88	0%	65	15.4%	11	0%	-	-	-	HMMSmart_SM00550
PMEPA1	56937	genome.wustl.edu	37	20	56227145	56227145	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020182.3	-1	validated	p.S276	1.000	61	0%	121	18.2%	12	50%	-	-	-	NULL
PMEPA1	56937	genome.wustl.edu	37	20	56234715	56234715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020182.3	-1	validated	p.V50M	1.000	55	0%	69	17.4%	13	30.7%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
ANKRD60	140731	genome.wustl.edu	37	20	56793600	56793600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001134442.3	-1	model	p.R330M	0.000	256	0%	214	18.2%	0	-	possibly_damaging(0.685)	deleterious(0)	deleterious(0.689)	NULL
ANKRD60	140731	genome.wustl.edu	37	20	56796476	56796476	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001134442.3	-1	model	p.W215*	0.972	234	0%	266	24.8%	0	-	-	-	-	superfamily_ANK
NPEPL1	79716	genome.wustl.edu	37	20	57289140	57289140	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024663.3	+1	validated	p.N431	1.000	39	0%	38	10.5%	89	20.2%	-	-	-	HMMPfam_Peptidase_M17,superfamily_Zn-dependent exopeptidases
GNAS	2778	genome.wustl.edu	37	20	57430345	57430345	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000450130	+1	known	p.R62*	0.020	65	0%	77	28.6%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_G-alpha,HMMSmart_SM00275
GNAS	2778	genome.wustl.edu	37	20	57485819	57485819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080425.2	+1	reviewed	p.R1017C	1.000	183	0%	121	14.9%	3019	23.3%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
TH1L	51497	genome.wustl.edu	37	20	57569246	57569246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198976.1	+1	reviewed	p.G564C	0.998	276	0.7%	203	20.2%	83	36.1%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_TH1
CTSZ	1522	genome.wustl.edu	37	20	57571843	57571843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001336.3	-1	reviewed	p.A218T	1.000	283	0%	269	20.1%	481	13.9%	benign(0.044)	deleterious(0.01)	neutral(0.408)	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
ATP5E	514	genome.wustl.edu	37	20	57605477	57605477	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001977.1	-1	reviewed	p.R14*	1.000	312	0%	441	10.9%	1135	7.3%	-	-	-	HMMPfam_ATP-synt_Eps,superfamily_ATP_synth_E
SLMO2	51012	genome.wustl.edu	37	20	57613522	57613522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016045.2	-1	validated	p.S67Y	1.000	151	0%	216	16.2%	47	25.5%	benign(0.223)	deleterious(0.04)	neutral(0.371)	HMMPfam_PRELI
ZNF831	128611	genome.wustl.edu	37	20	57829698	57829698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178457.1	+1	provisional	p.S1645F	0.026	101	0%	52	15.4%	2	0%	possibly_damaging(0.745)	deleterious(0)	deleterious(0.718)	NULL
ZNF831	128611	genome.wustl.edu	37	20	57829790	57829790	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178457.1	+1	provisional	p.E1676*	0.996	45	0%	19	42.1%	1	0%	-	-	-	NULL
PPP1R3D	5509	genome.wustl.edu	37	20	58514233	58514233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006242.3	-1	reviewed	p.R252C	0.000	18	0%	34	29.4%	2	0%	possibly_damaging(0.848)	tolerated(0.06)	deleterious(0.648)	HMMPfam_CBM_21
FAM217B	63939	genome.wustl.edu	37	20	58519757	58519757	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022106.1	+1	predicted	p.H253	0.000	116	0%	107	15.9%	3	66.6%	-	-	-	NULL
C20orf197	284756	genome.wustl.edu	37	20	58645713	58645713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173644.1	+1	predicted	p.G44D	0.000	225	0%	116	21.6%	0	-	benign(0.003)	-	-	NULL
CDH4	1002	genome.wustl.edu	37	20	60318751	60318751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001794.2	+1	reviewed	p.T101M	0.982	45	0%	35	20%	0	-	benign(0.002)	tolerated(0.15)	neutral(0.241)	HMMPfam_Cadherin_pro,superfamily_Cadherin
CDH4	1002	genome.wustl.edu	37	20	60448926	60448926	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001794.2	+1	reviewed	p.I340	0.690	87	0%	62	12.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
TAF4	6874	genome.wustl.edu	37	20	60572702	60572702	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003185.3	-1	reviewed	p.Q998H	1.000	379	0%	375	24.8%	26	42.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_TAF4
LSM14B	149986	genome.wustl.edu	37	20	60701386	60701386	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144703.2	+1	validated	p.S106	0.980	179	0.6%	140	16.4%	48	25%	-	-	-	NULL
LSM14B	149986	genome.wustl.edu	37	20	60704910	60704910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144703.2	+1	validated	p.A166D	0.007	89	0%	124	16.9%	34	38.2%	benign(0.19)	deleterious(0.01)	neutral(0.424)	NULL
LSM14B	149986	genome.wustl.edu	37	20	60705000	60705000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144703.2	+1	validated	p.T196M	0.251	65	0%	83	26.5%	42	38%	possibly_damaging(0.823)	deleterious(0.03)	deleterious(0.676)	NULL
LSM14B	149986	genome.wustl.edu	37	20	60706415	60706415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144703.2	+1	validated	p.D280G	1.000	147	0%	186	21%	25	52%	possibly_damaging(0.675)	deleterious(0)	deleterious(0.684)	NULL
GTPBP5	26164	genome.wustl.edu	37	20	60776052	60776052	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015666.3	+1	validated	p.Q380	1.000	57	0%	66	12.1%	12	33.3%	-	-	-	superfamily_SSF52540
ADRM1	11047	genome.wustl.edu	37	20	60883228	60883228	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007002.2	+1	reviewed	p.F336	1.000	63	0%	69	11.6%	428	16.1%	-	-	-	HMMPfam_ARM_1
LAMA5	3911	genome.wustl.edu	37	20	60893610	60893610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005560.3	-1	reviewed	p.G2380V	0.003	47	2.1%	29	44.8%	23	56.5%	possibly_damaging(0.513)	tolerated(0.06)	deleterious(0.495)	HMMPfam_Laminin_I
LAMA5	3911	genome.wustl.edu	37	20	60900480	60900480	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005560.3	-1	reviewed	p.F1807	0.999	41	0%	38	18.4%	20	45%	-	-	-	HMMPfam_Laminin_B,HMMSmart_SM00281
LAMA5	3911	genome.wustl.edu	37	20	60913622	60913622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005560.3	-1	reviewed	p.R507L	1.000	70	0%	59	16.9%	9	22.2%	probably_damaging(0.988)	tolerated(0.2)	deleterious(0.486)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_EGF/Laminin
LAMA5	3911	genome.wustl.edu	37	20	60921564	60921564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005560.3	-1	reviewed	p.R427H	0.027	132	0%	85	23.5%	10	20%	benign(0.074)	tolerated(0.14)	neutral(0.255)	PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin
GATA5	140628	genome.wustl.edu	37	20	61040046	61040046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080473.4	-1	reviewed	p.A347D	0.497	32	0%	24	33.3%	1	100%	benign(0.148)	tolerated(0.16)	neutral(0.072)	NULL
C20orf20	55257	genome.wustl.edu	37	20	61430915	61430915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018270.4	+1	validated	p.R179C	1.000	129	0%	136	29.4%	25	28%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
C20orf20	55257	genome.wustl.edu	37	20	61430980	61430980	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018270.4	+1	validated	p.K200	1.000	101	0%	89	28.1%	42	50%	-	-	-	NULL
OGFR	11054	genome.wustl.edu	37	20	61439547	61439547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000370461	+1	known	p.Q11H	0.016	95	1.1%	118	28%	0	-	benign(0.253)	deleterious(0.04)	neutral(0.375)	NULL
OGFR	11054	genome.wustl.edu	37	20	61444486	61444486	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007346.2	+1	reviewed	p.R507*	0.001	51	0%	35	28.6%	90	32.2%	-	-	-	NULL
COL9A3	1299	genome.wustl.edu	37	20	61452872	61452872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001853.3	+1	reviewed	p.P120H	1.000	37	0%	104	17.3%	0	-	unknown(0)	deleterious(0.03)	-	NULL
COL9A3	1299	genome.wustl.edu	37	20	61467851	61467851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001853.3	+1	reviewed	p.R524C	1.000	84	0%	85	29.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TCFL5	10732	genome.wustl.edu	37	20	61477349	61477349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000217162	-1	known	p.L453I	0.005	94	0%	75	22.7%	0	-	unknown(0)	-	-	NULL
DIDO1	11083	genome.wustl.edu	37	20	61512118	61512118	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033081.1	-1	reviewed	p.G1730	0.002	50	0%	47	14.9%	6	16.6%	-	-	-	NULL
DIDO1	11083	genome.wustl.edu	37	20	61513427	61513427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033081.1	-1	reviewed	p.A1294E	0.000	105	0%	149	27.5%	2	0%	possibly_damaging(0.507)	deleterious(0.02)	deleterious(0.552)	NULL
DIDO1	11083	genome.wustl.edu	37	20	61528135	61528135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033081.1	-1	reviewed	p.S601F	0.060	31	0%	40	22.5%	6	33.3%	possibly_damaging(0.858)	deleterious(0.04)	deleterious(0.680)	NULL
DIDO1	11083	genome.wustl.edu	37	20	61537259	61537259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033081.1	-1	reviewed	p.S523L	0.984	164	0%	148	23.6%	37	43.2%	possibly_damaging(0.947)	tolerated(0.05)	deleterious(0.736)	NULL
YTHDF1	54915	genome.wustl.edu	37	20	61834119	61834119	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017798.3	-1	validated	p.V391	1.000	51	0%	74	24.3%	30	40%	-	-	-	NULL
ARFGAP1	55738	genome.wustl.edu	37	20	61906986	61906986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_175609.1	+1	reviewed	p.E18D	1.000	159	0%	207	21.3%	11	27.2%	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
COL20A1	57642	genome.wustl.edu	37	20	61936898	61936898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020882.2	+1	validated	p.R108Q	0.879	75	0%	53	32.1%	0	-	benign(0.123)	tolerated(0.58)	neutral(0.015)	HMMPfam_fn3
COL20A1	57642	genome.wustl.edu	37	20	61937321	61937321	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020882.2	+1	validated	p.G142	0.070	66	0%	58	24.1%	0	-	-	-	-	NULL
COL20A1	57642	genome.wustl.edu	37	20	61944277	61944277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020882.2	+1	validated	p.K689N	0.506	55	0%	63	17.5%	0	-	probably_damaging(0.959)	tolerated(0.26)	neutral(0.436)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CHRNA4	1137	genome.wustl.edu	37	20	61987368	61987368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000370258	-1	known	p.P10H	1.000	88	0%	105	18.1%	0	-	unknown(0)	-	-	NULL
EEF1A2	1917	genome.wustl.edu	37	20	62124599	62124599	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001958.2	-1	reviewed	p.G221	0.968	31	0%	43	27.9%	0	-	-	-	-	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTK6	5753	genome.wustl.edu	37	20	62164012	62164012	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005975.2	-1	reviewed	p.Q233	0.000	100	0%	108	36.1%	3	66.6%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
PRIC285	85441	genome.wustl.edu	37	20	62200851	62200851	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037335.2	-1	reviewed	p.F246	0.003	24	0%	37	16.2%	4	25%	-	-	-	NULL
ARFRP1	10139	genome.wustl.edu	37	20	62333493	62333493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003224.3	-1	reviewed	p.A114V	0.993	74	0%	120	21.7%	62	37%	benign(0.034)	tolerated(0.35)	neutral(0.022)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZBTB46	140685	genome.wustl.edu	37	20	62421318	62421318	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025224.2	-1	provisional	p.Q265*	1.000	102	0%	106	22.6%	3	0%	-	-	-	NULL
ZBTB46	140685	genome.wustl.edu	37	20	62421696	62421696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025224.2	-1	provisional	p.D139Y	0.989	35	0%	46	30.4%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZBTB46	140685	genome.wustl.edu	37	20	62421748	62421748	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025224.2	-1	provisional	p.C121	1.000	31	0%	33	33.3%	1	0%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
TPD52L2	7165	genome.wustl.edu	37	20	62505045	62505045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_199360.1	+1	validated	p.R64S	1.000	104	0%	106	21.7%	81	43.2%	probably_damaging(0.998)	tolerated(0.26)	deleterious(0.508)	HMMPfam_TPD52
SAMD10	140700	genome.wustl.edu	37	20	62608659	62608659	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080621.4	-1	validated	p.T64	0.871	273	0.7%	221	25.3%	11	45.4%	-	-	-	NULL
TCEA2	6919	genome.wustl.edu	37	20	62701868	62701868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003195.4	+1	reviewed	p.E233D	1.000	54	0%	50	22%	81	28.3%	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	HMMPfam_TFIIS_M,HMMSmart_SM00510
RGS19	10287	genome.wustl.edu	37	20	62705881	62705881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005873.2	-1	reviewed	p.R56W	0.622	8	0.000	8	0.500	32	28.1%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	NULL
OPRL1	4987	genome.wustl.edu	37	20	62729951	62729951	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000913.3	+1	reviewed	p.C304	1.000	76	0%	64	18.8%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MYT1	4661	genome.wustl.edu	37	20	62839127	62839127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004535.2	+1	reviewed	p.G193D	0.000	84	0%	86	23.3%	0	-	benign(0.014)	tolerated(0.31)	neutral(0.028)	NULL
LIPI	149998	genome.wustl.edu	37	21	15481394	15481394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198996.2	-1	validated	p.L456F	0.815	391	0%	155	18.7%	0	-	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	NULL
RBM11	54033	genome.wustl.edu	37	21	15591978	15591978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144770.3	+1	validated	p.S64Y	1.000	242	0%	346	21.7%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
HSPA13	6782	genome.wustl.edu	37	21	15746314	15746314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006948.4	-1	reviewed	p.R347H	0.002	247	0%	224	20.1%	9	33.3%	benign(0.002)	tolerated(0.1)	neutral(0.286)	superfamily_Actin-like ATPase domain
HSPA13	6782	genome.wustl.edu	37	21	15753598	15753598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006948.4	-1	reviewed	p.D98N	1.000	422	0%	427	11.5%	6	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
HSPA13	6782	genome.wustl.edu	37	21	15753823	15753823	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006948.4	-1	reviewed	p.Q23*	1.000	149	0%	156	28.2%	6	16.6%	-	-	-	NULL
NRIP1	8204	genome.wustl.edu	37	21	16337839	16337839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003489.3	-1	reviewed	p.G892V	0.990	192	0%	104	13.5%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NRIP1	8204	genome.wustl.edu	37	21	16339634	16339634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003489.3	-1	reviewed	p.A294S	1.000	277	0%	101	29.7%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP25	29761	genome.wustl.edu	37	21	17236657	17236657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013396.3	+1	validated	p.R803H	1.000	228	0%	146	27.4%	22	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CXADR	1525	genome.wustl.edu	37	21	18924066	18924066	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001338.3	+1	reviewed	e3-1	1.000	255	0%	128	22.7%	0	-	-	-	-	-
CXADR	1525	genome.wustl.edu	37	21	18933714	18933714	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001338.3	+1	reviewed	p.A251	0.001	236	0%	77	18.2%	8	87.5%	-	-	-	NULL
NCAM2	4685	genome.wustl.edu	37	21	22664456	22664456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004540.2	+1	reviewed	p.Q172K	1.000	564	0%	79	13.9%	0	-	probably_damaging(0.963)	tolerated(0.22)	neutral(0.448)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22707873	22707873	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004540.2	+1	reviewed	p.S262	1.000	160	0%	41	17.1%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22746191	22746191	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004540.2	+1	reviewed	p.D351	0.370	243	0.4%	41	22%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
JAM2	58494	genome.wustl.edu	37	21	27056202	27056202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021219.2	+1	reviewed	p.K25N	1.000	344	0%	267	22.5%	1	0%	probably_damaging(0.963)	tolerated(0.11)	deleterious(0.677)	NULL
APP	351	genome.wustl.edu	37	21	27264143	27264143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000484.3	-1	reviewed	p.A701V	1.000	347	0%	101	21.8%	532	39.6%	benign(0.242)	deleterious(0)	deleterious(0.469)	HMMPfam_Beta-APP
APP	351	genome.wustl.edu	37	21	27327983	27327983	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000448850	-1	known	p.A418T	0.641	604	0.2%	187	18.2%	409	22.9%	-	-	-	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
CYYR1	116159	genome.wustl.edu	37	21	27938676	27938676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052954.2	-1	validated	p.A29T	1.000	282	0%	257	24.1%	3	0%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
ADAMTS1	9510	genome.wustl.edu	37	21	28214875	28214875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006988.3	-1	reviewed	p.S287L	1.000	121	0.8%	139	27.3%	11	45.4%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Reprolysin,superfamily_SSF55486
LTN1	26046	genome.wustl.edu	37	21	30316192	30316192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015565.2	-1	validated	p.Q1339H	1.000	303	0%	109	17.4%	2	100%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
LTN1	26046	genome.wustl.edu	37	21	30359102	30359102	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015565.2	-1	validated	p.R66*	1.000	284	0%	216	24.1%	0	-	-	-	-	superfamily_ARM repeat
LTN1	26046	genome.wustl.edu	37	21	30359208	30359208	+	Silent	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000452100	-1	known	p.N53Y	0.987	120	0%	87	19.5%	1	0%	-	-	-	NULL
USP16	10600	genome.wustl.edu	37	21	30409667	30409667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001032410.1	+1	reviewed	p.E173D	0.990	298	0.3%	170	16.5%	5	0%	probably_damaging(0.98)	tolerated(0.16)	deleterious(0.483)	NULL
USP16	10600	genome.wustl.edu	37	21	30426476	30426476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001032410.1	+1	reviewed	p.A814S	1.000	210	0%	93	15.1%	52	19.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
CCT8	10694	genome.wustl.edu	37	21	30434524	30434524	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006585.2	-1	validated	p.G379	0.997	600	0.2%	348	26.7%	274	79.9%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
CCT8	10694	genome.wustl.edu	37	21	30434529	30434529	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006585.2	-1	validated	p.R378*	1.000	585	0%	347	21.6%	296	1.3%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
CCT8	10694	genome.wustl.edu	37	21	30439315	30439315	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000431234	-1	known	p.T145I	1.000	320	0%	283	22.3%	100	2%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
GRIK1	2897	genome.wustl.edu	37	21	30934171	30934171	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000830.3	-1	reviewed	e15-1	1.000	277	0%	227	18.5%	0	-	-	-	-	-
GRIK1	2897	genome.wustl.edu	37	21	31015181	31015181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000830.3	-1	reviewed	p.R355C	1.000	118	0%	49	18.4%	0	-	possibly_damaging(0.777)	deleterious(0.05)	deleterious(0.635)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRIK1	2897	genome.wustl.edu	37	21	31045394	31045394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000830.3	-1	reviewed	p.A212V	1.000	412	0%	136	19.1%	0	-	possibly_damaging(0.573)	tolerated(0.25)	neutral(0.234)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
KRTAP24-1	643803	genome.wustl.edu	37	21	31654613	31654613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001085455.1	-1	validated	p.Y213C	0.001	265	0%	89	27%	0	-	possibly_damaging(0.797)	-	-	NULL
KRTAP27-1	643812	genome.wustl.edu	37	21	31709555	31709555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077711.1	-1	provisional	p.K144N	0.156	225	0%	58	25.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_PMG
KRTAP13-3	337960	genome.wustl.edu	37	21	31797913	31797913	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181622.1	-1	provisional	p.S106	0.000	171	0%	134	24.6%	0	-	-	-	-	HMMPfam_PMG
KRTAP13-3	337960	genome.wustl.edu	37	21	31798089	31798089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181622.1	-1	provisional	p.L48M	0.660	231	0%	191	23.6%	0	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	HMMPfam_PMG
KRTAP15-1	254950	genome.wustl.edu	37	21	31812777	31812777	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181623.1	+1	provisional	p.G44	0.117	186	0%	145	10.3%	0	-	-	-	-	HMMPfam_PMG
TIAM1	7074	genome.wustl.edu	37	21	32575329	32575329	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003253.2	-1	validated	e9-1	1.000	481	0%	218	17.4%	0	-	-	-	-	-
SOD1	6647	genome.wustl.edu	37	21	33039662	33039662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000454.4	+1	reviewed	p.H111N	0.033	598	0%	541	22.9%	912	40.4%	benign(0)	tolerated(0.89)	-	HMMPfam_Sod_Cu,superfamily_CuZn superoxide dismutase-like
HUNK	30811	genome.wustl.edu	37	21	33371167	33371167	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014586.1	+1	validated	p.S605	0.000	95	0%	37	21.6%	1	0%	-	-	-	NULL
URB1	9875	genome.wustl.edu	37	21	33689122	33689122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014825.2	-1	validated	p.A2097T	0.001	60	0%	38	15.8%	15	6.6%	possibly_damaging(0.941)	deleterious(0.03)	deleterious(0.751)	NULL
URB1	9875	genome.wustl.edu	37	21	33733325	33733325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014825.2	-1	validated	p.L583F	1.000	96	0%	51	15.7%	3	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
TCP10L	140290	genome.wustl.edu	37	21	33956542	33956542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144659.5	-1	validated	p.G25R	0.006	50	0%	58	12.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34029123	34029123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003895.3	-1	validated	p.G890D	1.000	413	0%	364	12.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_DNase I-like,HMMPfam_DUF1866,superfamily_RNA-binding domain RBD
IL10RB	3588	genome.wustl.edu	37	21	34652118	34652118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000628.3	+1	reviewed	p.F131L	0.902	649	0%	309	21.7%	43	30.2%	probably_damaging(0.999)	tolerated(0.34)	deleterious(0.513)	HMMSmart_FN3,superfamily_FN_III-like
IFNAR1	3454	genome.wustl.edu	37	21	34725978	34725978	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000629.2	+1	reviewed	p.I443M	0.000	641	0%	302	24.2%	46	47.8%	possibly_damaging(0.631)	deleterious(0.04)	deleterious(0.570)	NULL
GART	2618	genome.wustl.edu	37	21	34889690	34889690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000819.4	-1	reviewed	p.P643H	0.989	288	0%	131	19.8%	63	44.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_AIRS_C,superfamily_PurM C-terminal domain-like
GART	2618	genome.wustl.edu	37	21	34897223	34897223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000819.4	-1	reviewed	p.G384D	1.000	275	0%	87	23%	46	30.4%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Rudiment single hybrid motif,HMMPfam_GARS_C
GART	2618	genome.wustl.edu	37	21	34903096	34903096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000819.4	-1	reviewed	p.G231E	0.998	101	0%	92	18.5%	25	40%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_GARS_A,superfamily_Glutathione synthetase ATP-binding domain-like
SON	6651	genome.wustl.edu	37	21	34926207	34926207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138927.1	+1	reviewed	p.P1557H	0.056	247	0%	339	19.5%	18	61.1%	benign(0.013)	deleterious(0)	neutral(0.445)	NULL
SON	6651	genome.wustl.edu	37	21	34948855	34948855	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000436227	+1	known	p.L1446P	1.000	187	0%	117	20.5%	100	37%	-	-	-	superfamily_dsRNA-binding domain-like
ITSN1	6453	genome.wustl.edu	37	21	35144424	35144424	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003024.2	+1	reviewed	p.R368*	0.940	285	0%	128	18.8%	8	0%	-	-	-	NULL
ITSN1	6453	genome.wustl.edu	37	21	35229123	35229123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003024.2	+1	reviewed	p.E1249K	1.000	279	0.7%	180	22.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ITSN1	6453	genome.wustl.edu	37	21	35237482	35237482	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000381284	+1	known	p.R42W	0.003	57	0%	72	26.4%	0	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
KCNE2	9992	genome.wustl.edu	37	21	35742813	35742813	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172201.1	+1	reviewed	p.E12D	1.000	222	0%	202	21.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RCAN1	1827	genome.wustl.edu	37	21	35890440	35890440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004414.5	-1	reviewed	p.P234H	1.000	262	0.4%	194	21.6%	15	40%	possibly_damaging(0.845)	deleterious(0)	deleterious(0.768)	HMMPfam_Calcipressin
CLIC6	54102	genome.wustl.edu	37	21	36081050	36081050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053277.1	+1	reviewed	p.V555M	0.582	162	0%	118	16.9%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_Glutathione S-transferase (GST) C-terminal domain
RUNX1	861	genome.wustl.edu	37	21	36164827	36164827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001754.4	-1	reviewed	p.P350S	1.000	37	0%	31	29%	11	27.2%	benign(0.008)	deleterious(0.01)	neutral(0.406)	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37661071	37661071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005128.2	+1	validated	p.Q2105H	0.993	252	0%	225	24%	44	52.2%	probably_damaging(0.968)	tolerated(0.2)	neutral(0.459)	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37665757	37665757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005128.2	+1	validated	p.A2262D	0.000	227	0%	278	20.1%	57	36.8%	benign(0.133)	deleterious(0.02)	neutral(0.394)	NULL
MORC3	23515	genome.wustl.edu	37	21	37706016	37706016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015358.2	+1	reviewed	p.D38N	1.000	371	0%	333	23.7%	2	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_HATPase_c,superfamily_ATP_bd_ATPase
TTC3	7267	genome.wustl.edu	37	21	38460138	38460138	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001894.1	+1	validated	p.V50	0.000	426	0%	304	20.7%	2	0%	-	-	-	NULL
TTC3	7267	genome.wustl.edu	37	21	38507760	38507760	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001894.1	+1	validated	p.S508	0.990	140	0.7%	45	17.8%	8	37.5%	-	-	-	superfamily_Spectrin,superfamily_SSF48452
DSCR3	10311	genome.wustl.edu	37	21	38599999	38599999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000309117	-1	known	p.R256M	1.000	107	0%	129	21.7%	35	48.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Vps26
DYRK1A	1859	genome.wustl.edu	37	21	38865350	38865350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001396.3	+1	reviewed	p.R328Q	1.000	327	0%	147	25.2%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ETS2	2114	genome.wustl.edu	37	21	40188989	40188989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005239.4	+1	validated	p.P188H	0.980	279	0%	233	17.6%	39	25.6%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
FLJ45139	400867	genome.wustl.edu	37	21	40250468	40250468	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_078571.1	-1	model	NULL	0.000	145	0%	90	20%	0	-	-	-	-	-
BRWD1	54014	genome.wustl.edu	37	21	40641839	40641839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018963.3	-1	reviewed	p.H506Y	1.000	513	0%	226	24.8%	0	-	benign(0.214)	tolerated(0.13)	neutral(0.274)	HMMSmart_SM00320,superfamily_WD40 repeat-like
DSCAM	1826	genome.wustl.edu	37	21	41505934	41505934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001389.3	-1	validated	p.L1137M	1.000	206	0%	144	17.4%	0	-	probably_damaging(0.976)	tolerated(0.21)	neutral(0.462)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MX2	4600	genome.wustl.edu	37	21	42762527	42762527	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002463.1	+1	reviewed	p.Q256	1.000	296	0%	147	23.1%	10	20%	-	-	-	HMMPfam_Dynamin_N,HMMSmart_DYNc,superfamily_SSF52540
MX2	4600	genome.wustl.edu	37	21	42762576	42762576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002463.1	+1	reviewed	p.T273A	1.000	239	0%	109	11.9%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynamin_N,HMMSmart_DYNc,superfamily_SSF52540
MX1	4599	genome.wustl.edu	37	21	42821072	42821072	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144925.1	+1	reviewed	p.I428L	0.000	89	0%	81	22.2%	89	59.5%	benign(0.003)	tolerated(0.3)	neutral(0.029)	HMMPfam_Dynamin_M
TMPRSS2	7113	genome.wustl.edu	37	21	42852418	42852418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005656.3	-1	reviewed	p.R186M	0.153	66	0%	63	15.9%	1	0%	possibly_damaging(0.91)	deleterious(0.04)	deleterious(0.712)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
TMPRSS2	7113	genome.wustl.edu	37	21	42861469	42861469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005656.3	-1	reviewed	p.G97E	0.005	139	0%	88	15.9%	0	-	possibly_damaging(0.939)	deleterious(0.02)	deleterious(0.768)	NULL
RIPK4	54101	genome.wustl.edu	37	21	43171375	43171375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020639.2	-1	reviewed	p.G169R	1.000	207	0%	207	14.5%	25	16%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Kinase_like,HMMPfam_Pkinase
PRDM15	63977	genome.wustl.edu	37	21	43236075	43236075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022115.3	-1	validated	p.C1159Y	1.000	55	0%	51	31.4%	3	66.6%	probably_damaging(0.976)	tolerated(1)	neutral(0.418)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PRDM15	63977	genome.wustl.edu	37	21	43291638	43291638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022115.3	-1	validated	p.S169I	0.002	128	0%	145	18.6%	0	-	unknown(0)	-	-	NULL
C2CD2	25966	genome.wustl.edu	37	21	43319187	43319187	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000449165	-1	known	p.A101T	0.962	36	0%	40	25%	4	25%	-	-	-	NULL
ZNF295	49854	genome.wustl.edu	37	21	43411651	43411651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098402.1	-1	validated	p.E852K	1.000	98	0%	77	23.4%	2	50%	possibly_damaging(0.824)	tolerated(0.07)	deleterious(0.631)	NULL
ZNF295	49854	genome.wustl.edu	37	21	43411831	43411831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098402.1	-1	validated	p.R792W	1.000	114	0%	72	20.8%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF295	49854	genome.wustl.edu	37	21	43412904	43412904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098402.1	-1	validated	p.S434I	1.000	216	0%	106	23.6%	3	33.3%	benign(0.126)	deleterious(0.01)	neutral(0.416)	NULL
ZNF295	49854	genome.wustl.edu	37	21	43413338	43413338	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098402.1	-1	validated	p.P289	0.662	233	0%	114	32.5%	2	100%	-	-	-	NULL
UMODL1	89766	genome.wustl.edu	37	21	43547183	43547183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173568.3	+1	validated	p.G1249R	0.942	201	0%	146	16.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
ABCG1	9619	genome.wustl.edu	37	21	43714663	43714663	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000489035	+1	known	p.R303C	0.984	143	0%	163	22.1%	76	36.8%	-	-	-	HMMPfam_ABC2_membrane
TMPRSS3	64699	genome.wustl.edu	37	21	43804079	43804079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024022.2	-1	reviewed	p.A206S	0.996	218	0%	152	13.2%	121	0%	benign(0.039)	tolerated(0.55)	neutral(0.009)	superfamily_Trypsin-like serine proteases,superfamily_SRCR-like
UBASH3A	53347	genome.wustl.edu	37	21	43838560	43838560	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018961.2	+1	validated	p.T296	0.992	91	0%	52	25%	16	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
SLC37A1	54020	genome.wustl.edu	37	21	43955601	43955601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018964.3	+1	reviewed	p.Q97H	1.000	318	0%	290	24.8%	14	42.8%	benign(0.023)	tolerated(0.07)	neutral(0.320)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC37A1	54020	genome.wustl.edu	37	21	43982209	43982209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018964.3	+1	reviewed	p.C335R	1.000	751	0%	671	13%	18	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC37A1	54020	genome.wustl.edu	37	21	43988497	43988497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018964.3	+1	reviewed	p.A458T	0.961	258	0%	248	30.2%	24	12.5%	benign(0.004)	tolerated(0.11)	neutral(0.272)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
WDR4	10785	genome.wustl.edu	37	21	44275801	44275801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018669.4	-1	reviewed	p.Q239H	0.000	16	0%	25	48%	30	60%	benign(0.261)	tolerated(0.22)	neutral(0.069)	superfamily_WD40 repeat-like
NDUFV3	4731	genome.wustl.edu	37	21	44323764	44323764	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021075.3	+1	reviewed	p.P214	0.000	75	0%	83	25.3%	26	53.8%	-	-	-	NULL
CBS	875	genome.wustl.edu	37	21	44482448	44482448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000071.2	-1	reviewed	p.L338M	1.000	43	0%	71	21.1%	244	47.1%	possibly_damaging(0.58)	deleterious(0.02)	deleterious(0.582)	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
CBS	875	genome.wustl.edu	37	21	44485544	44485544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000071.2	-1	reviewed	p.A207T	1.000	64	0%	62	29%	202	48.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
CRYAA	1409	genome.wustl.edu	37	21	44592349	44592349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000394.2	+1	reviewed	p.V161M	1.000	31	0%	33	39.4%	0	-	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMPfam_HSP20,superfamily_HSP20-like chaperones
HSF2BP	11077	genome.wustl.edu	37	21	44949829	44949829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007031.1	-1	reviewed	p.E270D	0.937	109	0%	72	23.6%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
RRP1B	23076	genome.wustl.edu	37	21	45094931	45094931	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015056.2	+1	validated	p.L146V	0.028	319	0%	254	16.5%	10	10%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_Nop52
PDXK	8566	genome.wustl.edu	37	21	45153948	45153948	+	Splice_Site	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003681.4	+1	reviewed	e2-2	1.000	495	0.2%	644	20.8%	2	100%	-	-	-	-
PDXK	8566	genome.wustl.edu	37	21	45173526	45173526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003681.4	+1	reviewed	p.V229I	1.000	182	0%	196	14.8%	475	34.5%	benign(0.125)	tolerated(0.31)	neutral(0.037)	HMMPfam_PfkB,superfamily_Ribokinase-like
TRAPPC10	7109	genome.wustl.edu	37	21	45503039	45503039	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003274.4	+1	reviewed	p.N698	0.391	113	0%	81	24.7%	7	14.2%	-	-	-	NULL
TRAPPC10	7109	genome.wustl.edu	37	21	45507665	45507665	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003274.4	+1	reviewed	p.V875	0.992	151	0%	133	19.5%	8	37.5%	-	-	-	NULL
PWP2	5822	genome.wustl.edu	37	21	45548014	45548014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005049.2	+1	validated	p.A781V	0.149	83	0%	85	25.9%	70	44.2%	possibly_damaging(0.46)	deleterious(0.02)	deleterious(0.534)	HMMPfam_PWP2
AIRE	326	genome.wustl.edu	37	21	45706514	45706514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000383.2	+1	reviewed	p.Q69H	0.995	48	0%	52	23.1%	0	-	probably_damaging(0.972)	deleterious(0.03)	deleterious(0.778)	HMMPfam_Sp100
PFKL	5211	genome.wustl.edu	37	21	45741738	45741738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002626.4	+1	reviewed	p.E440K	1.000	85	0%	88	19.3%	167	39.5%	possibly_damaging(0.929)	tolerated(0.08)	deleterious(0.676)	HMMPfam_PFK,superfamily_Phosphofructokinase
TRPM2	7226	genome.wustl.edu	37	21	45810801	45810801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003307.3	+1	reviewed	p.D445N	0.999	189	0%	187	19.8%	2	0%	benign(0.176)	tolerated(0.12)	neutral(0.277)	NULL
TRPM2	7226	genome.wustl.edu	37	21	45817704	45817704	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003307.3	+1	reviewed	p.T669	0.837	95	0%	67	22.4%	4	0%	-	-	-	NULL
TRPM2	7226	genome.wustl.edu	37	21	45820226	45820226	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003307.3	+1	reviewed	p.L765	0.972	95	0%	89	18%	7	14.2%	-	-	-	NULL
TRPM2	7226	genome.wustl.edu	37	21	45825804	45825804	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003307.3	+1	reviewed	p.L892	0.722	80	0%	50	24%	7	0%	-	-	-	HMMPfam_Ion_trans
LRRC3	81543	genome.wustl.edu	37	21	45877191	45877191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030891.3	+1	validated	p.V222I	0.016	45	0%	73	21.9%	2	0%	benign(0.073)	deleterious(0.01)	neutral(0.411)	NULL
KRTAP10-8	386681	genome.wustl.edu	37	21	46032530	46032530	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198695.2	+1	validated	p.C171	0.118	416	0%	406	20%	0	-	-	-	-	NULL
KRTAP10-11	386678	genome.wustl.edu	37	21	46067045	46067045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198692.2	+1	validated	p.A224T	0.000	371	0%	291	24.4%	0	-	possibly_damaging(0.515)	tolerated(1)	neutral(0.173)	NULL
KRTAP10-12	386685	genome.wustl.edu	37	21	46117177	46117177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198699.1	+1	provisional	p.D21N	0.012	160	0%	145	20.7%	0	-	probably_damaging(0.995)	tolerated(0.19)	deleterious(0.507)	NULL
KRTAP10-12	386685	genome.wustl.edu	37	21	46117416	46117416	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198699.1	+1	provisional	p.C100	0.999	156	0%	166	18.7%	0	-	-	-	-	HMMPfam_Keratin_B2
PTTG1IP	754	genome.wustl.edu	37	21	46271410	46271410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000445724	-1	known	p.G101S	0.000	163	0%	141	11.3%	116	11.2%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
ITGB2	3689	genome.wustl.edu	37	21	46306769	46306769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000211.3	-1	reviewed	p.A710V	0.127	30	0%	33	27.3%	220	0.9%	benign(0.008)	deleterious(0.04)	neutral(0.349)	NULL
ITGB2	3689	genome.wustl.edu	37	21	46309923	46309923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000211.3	-1	reviewed	p.R543C	1.000	51	0%	46	17.4%	128	0.7%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_SSF57196
ITGB2	3689	genome.wustl.edu	37	21	46310004	46310004	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000211.3	-1	reviewed	p.Q516*	1.000	57	0%	65	21.5%	172	0%	-	-	-	PatternScan_INTEGRIN_BETA
SLC19A1	6573	genome.wustl.edu	37	21	46935724	46935724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194255.1	-1	validated	p.T542A	0.000	76	0%	90	13.3%	22	22.7%	benign(0.01)	deleterious(0)	neutral(0.445)	NULL
SLC19A1	6573	genome.wustl.edu	37	21	46951668	46951668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194255.1	-1	validated	p.F195S	1.000	43	0%	46	15.2%	21	38%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_Folate_carrier,superfamily_MFS general substrate transporter
COL6A1	1291	genome.wustl.edu	37	21	47402565	47402565	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001848.2	+1	reviewed	p.F39V	1.000	93	0%	127	28.3%	57	22.8%	probably_damaging(0.994)	tolerated(0.21)	deleterious(0.496)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
COL6A2	1292	genome.wustl.edu	37	21	47545214	47545214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001849.3	+1	reviewed	p.C602Y	1.000	29	0%	47	31.9%	159	2.5%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
COL6A2	1292	genome.wustl.edu	37	21	47546420	47546420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001849.3	+1	reviewed	p.P809H	1.000	77	0%	75	21.3%	313	1.2%	probably_damaging(1)	-	-	superfamily_vWA-like
FTCD	10841	genome.wustl.edu	37	21	47570400	47570400	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006657.2	-1	reviewed	p.L226	1.000	136	0%	110	23.6%	0	-	-	-	-	superfamily_Formiminotransferase domain of formiminotransferase-cyclodeaminase.,HMMPfam_FTCD
LSS	4047	genome.wustl.edu	37	21	47616169	47616169	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001438.2	-1	reviewed	p.T561	0.124	134	0%	100	22%	9	44.4%	-	-	-	HMMPfam_Prenyltrans,superfamily_Terp_cyc_toroid
LSS	4047	genome.wustl.edu	37	21	47641853	47641853	+	Silent	SNP	C	C	T	rs182615882	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001438.2	-1	reviewed	p.A155	0.019	230	0%	276	19.6%	10	40%	-	-	-	HMMPfam_Prenyltrans,superfamily_Terp_cyc_toroid
MCM3AP	8888	genome.wustl.edu	37	21	47697611	47697611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003906.3	-1	reviewed	p.S563N	0.000	179	0%	141	12.1%	12	8.3%	benign(0.141)	deleterious(0.02)	neutral(0.395)	NULL
PCNT	5116	genome.wustl.edu	37	21	47808754	47808754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006031.5	+1	reviewed	p.G1188R	0.999	40	0%	29	31%	4	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PCNT	5116	genome.wustl.edu	37	21	47811279	47811279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006031.5	+1	reviewed	p.A1402S	0.023	12	0%	12	41.7%	1	100%	benign(0.138)	tolerated(0.61)	neutral(0.015)	NULL
PCNT	5116	genome.wustl.edu	37	21	47850052	47850052	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006031.5	+1	reviewed	p.R2607*	0.001	212	0%	186	30.6%	7	0%	-	-	-	NULL
PCNT	5116	genome.wustl.edu	37	21	47863790	47863790	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006031.5	+1	reviewed	p.P3256	0.000	35	0%	45	31.1%	22	36.3%	-	-	-	NULL
PCNT	5116	genome.wustl.edu	37	21	47863852	47863852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006031.5	+1	reviewed	p.S3277I	0.000	39	0%	35	31.4%	19	31.5%	possibly_damaging(0.936)	deleterious(0.03)	deleterious(0.746)	NULL
DIP2A	23181	genome.wustl.edu	37	21	47916979	47916979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015151.3	+1	reviewed	p.S121F	1.000	504	0%	341	19.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DMAP_binding
DIP2A	23181	genome.wustl.edu	37	21	47970482	47970482	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015151.3	+1	reviewed	p.G888	0.894	114	0%	137	21.9%	4	25%	-	-	-	superfamily_Acetyl-CoA synthetase-like
PRMT2	3275	genome.wustl.edu	37	21	48068477	48068477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000379844	+1	known	p.A30D	1.000	294	0%	318	21.7%	83	30.1%	benign(0.005)	tolerated(1)	-	NULL
ENSG00000215575	0	genome.wustl.edu	37	22	17063544	17063544	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000400600	-1	known	p.D2	0.951	107	0%	93	22.6%	0	-	-	-	-	HMMPfam_CaKB
GAB4	128954	genome.wustl.edu	37	22	17443698	17443698	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037814.1	-1	provisional	p.Q550	1.000	141	0%	133	11.3%	0	-	-	-	-	NULL
CECR2	27443	genome.wustl.edu	37	22	18020332	18020332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000400573	+1	known	p.S554L	0.421	67	0%	55	23.6%	1	0%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
LOC100288065	100288065	genome.wustl.edu	37	22	18063934	18063934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344192.1	-1	model	p.Q287R	0.000	108	0%	100	26%	0	-	-	-	-	NULL
SLC25A18	83733	genome.wustl.edu	37	22	18070790	18070790	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031481.1	+1	provisional	p.F225	0.010	490	0.2%	287	18.1%	1	0%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
BID	637	genome.wustl.edu	37	22	18232941	18232941	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_197966.1	-1	reviewed	e2-1	0.228	14	0%	17	29.4%	0	-	-	-	-	-
MICAL3	57553	genome.wustl.edu	37	22	18300668	18300668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015241.2	-1	provisional	p.A1587T	0.059	23	4.3%	24	20.8%	8	37.5%	benign(0.005)	deleterious(0.01)	neutral(0.406)	NULL
MICAL3	57553	genome.wustl.edu	37	22	18379530	18379530	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015241.2	-1	provisional	p.H389P	1.000	108	0.9%	35	17.1%	3	66.6%	probably_damaging(0.971)	tolerated(0.14)	deleterious(0.662)	superfamily_Calponin-homology domain CH-domain,superfamily_FAD/NAD(P)-binding domain
PRODH	5625	genome.wustl.edu	37	22	18904488	18904488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016335.3	-1	reviewed	p.V481M	0.997	122	0%	128	20.3%	20	0%	benign(0.001)	tolerated(0.26)	neutral(0.034)	HMMPfam_Pro_dh,superfamily_FAD-linked oxidoreductase
DGCR14	8220	genome.wustl.edu	37	22	19127526	19127526	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022719.2	-1	reviewed	p.E138*	0.986	57	0%	63	17.5%	17	5.8%	-	-	-	HMMPfam_Es2
LOC100288309	100288309	genome.wustl.edu	37	22	19163745	19163745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002344193.1	+1	model	p.A106T	0.785	78	0%	135	25.2%	253	34.3%	-	-	-	NULL
CLTCL1	8218	genome.wustl.edu	37	22	19175547	19175547	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007098.3	-1	reviewed	p.N1460	1.000	258	0%	271	21.4%	9	77.7%	-	-	-	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
CLTCL1	8218	genome.wustl.edu	37	22	19184098	19184098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007098.3	-1	reviewed	p.G1315S	1.000	76	0%	75	17.3%	17	41.1%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
CDC45	8318	genome.wustl.edu	37	22	19470333	19470333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003504.3	+1	reviewed	p.V109I	1.000	403	0%	369	19.8%	17	5.8%	benign(0.099)	tolerated(1)	neutral(0.007)	HMMPfam_CDC45
CDC45	8318	genome.wustl.edu	37	22	19502480	19502480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000444382	+1	known	p.L471I	0.000	168	0%	160	25%	0	-	-	-	-	HMMPfam_CDC45
SEPT5	5413	genome.wustl.edu	37	22	19709395	19709395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002688.4	+1	reviewed	p.R289C	1.000	60	0%	58	19%	9	11.1%	benign(0.006)	deleterious(0.03)	neutral(0.364)	HMMPfam_Septin
TBX1	6899	genome.wustl.edu	37	22	19750825	19750825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080647.1	+1	reviewed	p.L158M	1.000	195	0%	235	25.5%	0	-	possibly_damaging(0.555)	tolerated(0.09)	deleterious(0.486)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
C22orf29	79680	genome.wustl.edu	37	22	19838830	19838830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024627.5	-1	validated	p.P319T	0.000	138	0%	280	23.6%	10	40%	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
C22orf29	79680	genome.wustl.edu	37	22	19839605	19839605	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024627.5	-1	validated	p.T60	0.000	65	0%	66	22.7%	3	66.6%	-	-	-	NULL
COMT	1312	genome.wustl.edu	37	22	19956170	19956170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000754.3	+1	reviewed	p.H243Y	0.173	108	0%	86	18.6%	199	30.6%	benign(0)	tolerated(1)	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ARVCF	421	genome.wustl.edu	37	22	19967492	19967492	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001670.1	-1	reviewed	p.E390	0.999	17	0.000	9	0.444	0	-	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
ARVCF	421	genome.wustl.edu	37	22	19978222	19978222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001670.1	-1	reviewed	p.Q32H	0.998	32	0%	35	20%	0	-	possibly_damaging(0.852)	deleterious(0)	deleterious(0.772)	NULL
C22orf25	128989	genome.wustl.edu	37	22	20049205	20049205	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000485715	+1	known	NULL	1.000	53	0%	48	20.8%	18	22.2%	-	-	-	-
TRMT2A	27037	genome.wustl.edu	37	22	20101085	20101085	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000439169	-1	known	e9-1	0.000	24	0%	61	32.8%	1	100%	-	-	-	-
TRMT2A	27037	genome.wustl.edu	37	22	20103287	20103287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022727.4	-1	validated	p.N206D	1.000	31	0%	41	29.3%	33	36.3%	benign(0.104)	tolerated(0.1)	neutral(0.294)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ZDHHC8	29801	genome.wustl.edu	37	22	20131150	20131150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013373.3	+1	reviewed	p.R666M	0.985	10	0.000	5	0.800	13	53.8%	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
DGCR6L	85359	genome.wustl.edu	37	22	20302896	20302896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033257.2	-1	reviewed	p.A159V	1.000	91	0%	128	18.8%	117	35.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DGCR6
RIMBP3	85376	genome.wustl.edu	37	22	20457006	20457006	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015672.1	-1	validated	p.S1432	0.000	197	0%	230	13.5%	1	0%	-	-	-	NULL
KLHL22	84861	genome.wustl.edu	37	22	20812148	20812148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032775.2	-1	validated	p.R418S	1.000	74	0%	60	16.7%	33	9%	probably_damaging(0.992)	tolerated(0.16)	deleterious(0.507)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL22	84861	genome.wustl.edu	37	22	20843381	20843381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032775.2	-1	validated	p.L40M	1.000	117	0%	140	24.3%	9	33.3%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_POZ domain,HMMPfam_BTB
FAM108A5P	729495	genome.wustl.edu	37	22	21022397	21022397	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343784.1	-1	model	p.P307	0.997	50	0%	39	28.2%	44	0%	-	-	-	superfamily_alpha/beta-Hydrolases
PI4KA	5297	genome.wustl.edu	37	22	21083604	21083604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_058004.2	-1	reviewed	p.A1502V	1.000	172	0%	98	29.6%	32	21.8%	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_ARM repeat
SERPIND1	3053	genome.wustl.edu	37	22	21141224	21141224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000185.3	+1	reviewed	p.T457M	0.821	171	0%	73	21.9%	0	-	possibly_damaging(0.642)	tolerated(0.13)	deleterious(0.478)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SNAP29	9342	genome.wustl.edu	37	22	21237844	21237844	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004782.3	+1	reviewed	p.I202	0.694	266	0%	159	23.3%	82	47.5%	-	-	-	HMMPfam_SNARE,HMMSmart_t_SNARE
CRKL	1399	genome.wustl.edu	37	22	21288128	21288128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005207.3	+1	reviewed	p.L125M	1.000	342	0%	133	23.3%	10	80%	benign(0.049)	tolerated(0.14)	neutral(0.253)	superfamily_SH3-domain,superfamily_SH2 domain
LZTR1	8216	genome.wustl.edu	37	22	21341853	21341853	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006767.3	+1	reviewed	p.G127	0.995	77	0%	105	23.8%	7	57.1%	-	-	-	HMMSmart_SM00612,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2
P2RX6	9127	genome.wustl.edu	37	22	21377819	21377819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005446.3	+1	reviewed	p.V268I	0.000	170	0%	180	27.2%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR
HIC2	23119	genome.wustl.edu	37	22	21800178	21800178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015094.2	+1	validated	p.H332Y	1.000	9	0.000	9	0.444	1	0%	possibly_damaging(0.891)	tolerated(0.1)	deleterious(0.637)	NULL
PPIL2	23759	genome.wustl.edu	37	22	22036729	22036729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_148176.2	+1	reviewed	p.V131L	1.000	130	0%	117	21.4%	28	46.4%	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	NULL
TOP3B	8940	genome.wustl.edu	37	22	22318370	22318370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003935.3	-1	reviewed	p.R377C	1.000	158	0%	148	22.3%	11	36.3%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00437,HMMPfam_Topoisom_bac
TOP3B	8940	genome.wustl.edu	37	22	22328814	22328814	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003935.3	-1	reviewed	p.H39	0.331	104	0%	98	18.4%	4	25%	-	-	-	superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00493,HMMPfam_Toprim
ZNF280A	129025	genome.wustl.edu	37	22	22868685	22868685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080740.3	-1	reviewed	p.L424F	1.000	288	0.3%	252	25.4%	1	100%	benign(0.418)	deleterious(0.02)	deleterious(0.518)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PRAME	23532	genome.wustl.edu	37	22	22890622	22890622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006115.3	-1	reviewed	p.R466M	0.001	148	0%	88	15.9%	237	32%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
IGLV2-33	28811	genome.wustl.edu	37	22	22930946	22930946	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390302	+1	known	p.D47	0.180	256	0%	124	11.3%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
GGTLC2	91227	genome.wustl.edu	37	22	22989573	22989573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000215938	+1	known	p.V142A	0.981	194	0%	141	27.7%	0	-	-	-	-	NULL
IGLV2-23	28813	genome.wustl.edu	37	22	23040852	23040852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390306	+1	known	p.Q100H	0.950	221	0%	130	23.1%	2527	0%	benign(0.042)	deleterious(0)	neutral(0.447)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV2-11	28816	genome.wustl.edu	37	22	23135373	23135373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390314	+1	known	p.V79I	0.184	335	0%	247	11.3%	355	0%	benign(0.005)	tolerated(1)	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV3-1	28809	genome.wustl.edu	37	22	23223413	23223413	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000390319	+1	known	p.S61	1.000	183	0%	101	29.7%	706	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
RTDR1	27156	genome.wustl.edu	37	22	23401708	23401708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014433.2	-1	reviewed	p.P327S	0.026	145	0%	109	21.1%	14	14.2%	possibly_damaging(0.771)	tolerated(0.7)	neutral(0.288)	NULL
BCR	613	genome.wustl.edu	37	22	23603586	23603586	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004327.3	+1	reviewed	p.V537	1.000	152	0%	166	25.9%	56	62.5%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
LOC649264	649264	genome.wustl.edu	37	22	23715872	23715872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_001131286.2	-1	model	p.W79C	1.000	73	0%	42	33.3%	0	-	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
ZNF70	7621	genome.wustl.edu	37	22	24086615	24086615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021916.2	-1	provisional	p.S238I	0.131	131	0%	130	13.1%	1	0%	probably_damaging(0.981)	tolerated(0.5)	neutral(0.435)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MMP11	4320	genome.wustl.edu	37	22	24124566	24124566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005940.3	+1	reviewed	p.R410H	1.000	34	0%	67	19.4%	538	0.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
SMARCB1	6598	genome.wustl.edu	37	22	24135750	24135750	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003073.3	+1	reviewed	p.H79	0.746	134	1.5%	107	22.4%	145	33.7%	-	-	-	NULL
SMARCB1	6598	genome.wustl.edu	37	22	24159083	24159083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003073.3	+1	reviewed	p.S252I	1.000	194	0%	110	20.9%	161	37.8%	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_SNF5
SLC2A11	66035	genome.wustl.edu	37	22	24226001	24226001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030807.3	+1	validated	p.G350S	0.988	497	0.4%	384	21.1%	4	25%	possibly_damaging(0.932)	tolerated(0.44)	neutral(0.391)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
SLC2A11	66035	genome.wustl.edu	37	22	24226219	24226219	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000407566	+1	known	p.W132*	0.393	84	0%	60	23.3%	0	-	-	-	-	NULL
CABIN1	23523	genome.wustl.edu	37	22	24452798	24452798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012295.2	+1	reviewed	p.L413I	1.000	159	0%	98	23.5%	4	50%	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	NULL
CABIN1	23523	genome.wustl.edu	37	22	24455824	24455824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012295.2	+1	reviewed	p.S466Y	1.000	196	0%	140	25.7%	16	50%	possibly_damaging(0.951)	deleterious(0.04)	deleterious(0.743)	NULL
CABIN1	23523	genome.wustl.edu	37	22	24458436	24458436	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012295.2	+1	reviewed	p.C548	1.000	195	0%	180	23.9%	13	69.2%	-	-	-	NULL
CABIN1	23523	genome.wustl.edu	37	22	24487598	24487598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012295.2	+1	reviewed	p.R1196H	0.987	61	0%	33	12.1%	27	44.4%	benign(0.161)	tolerated(0.09)	neutral(0.311)	superfamily_SSF48452
SUSD2	56241	genome.wustl.edu	37	22	24579113	24579113	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019601.3	+1	validated	p.C55*	0.192	212	0%	202	14.9%	3	0%	-	-	-	HMMPfam_Somatomedin_B,HMMSmart_SO,PatternScan_SMB_1,superfamily_SSF90188
SUSD2	56241	genome.wustl.edu	37	22	24579517	24579517	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019601.3	+1	validated	p.H114	1.000	70	0%	117	20.5%	3	0%	-	-	-	NULL
SUSD2	56241	genome.wustl.edu	37	22	24581503	24581503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019601.3	+1	validated	p.P345H	0.996	29	0%	40	17.5%	0	-	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	HMMPfam_AMOP,HMMSmart_AMOP
SUSD2	56241	genome.wustl.edu	37	22	24582229	24582229	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019601.3	+1	validated	p.T496	0.000	39	0%	46	13%	3	33.3%	-	-	-	HMMPfam_VWD,HMMSmart_VWD
SUSD2	56241	genome.wustl.edu	37	22	24584205	24584205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019601.3	+1	validated	p.A785V	0.002	74	0%	75	26.7%	1	0%	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
SPECC1L	23384	genome.wustl.edu	37	22	24717484	24717484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145468.1	+1	validated	p.A179V	1.000	119	0%	154	18.8%	6	66.6%	benign(0.002)	tolerated(0.18)	neutral(0.056)	NULL
ADORA2A	135	genome.wustl.edu	37	22	24836861	24836861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000675.4	+1	reviewed	p.P215S	0.988	98	0%	68	27.9%	8	0%	benign(0)	tolerated(0.82)	neutral(0.001)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ADORA2A	135	genome.wustl.edu	37	22	24837106	24837106	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000675.4	+1	reviewed	p.R296	0.992	64	0%	62	24.2%	16	0%	-	-	-	superfamily_Family A G protein-coupled receptor-like
UPB1	51733	genome.wustl.edu	37	22	24891463	24891463	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000413389	+1	known	p.W20*	1.000	50	0%	78	14.1%	0	-	-	-	-	NULL
UPB1	51733	genome.wustl.edu	37	22	24896230	24896230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016327.2	+1	reviewed	p.A87V	0.982	137	0%	144	13.2%	0	-	possibly_damaging(0.83)	deleterious(0.02)	deleterious(0.699)	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase
SNRPD3	6634	genome.wustl.edu	37	22	24967908	24967908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004175.3	+1	reviewed	p.G115V	1.000	356	0%	209	13.9%	283	26.8%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_Sm-like ribonucleoproteins
GGT1	2678	genome.wustl.edu	37	22	25023537	25023537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001032364.2	+1	reviewed	p.V387I	0.999	115	0%	117	13.7%	2	0%	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE
PIWIL3	440822	genome.wustl.edu	37	22	25131759	25131759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008496.2	-1	validated	p.S517I	0.000	402	0%	209	25.4%	0	-	benign(0.072)	deleterious(0)	neutral(0.450)	NULL
SGSM1	129049	genome.wustl.edu	37	22	25282587	25282587	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039948.2	+1	validated	p.L609	1.000	92	0%	76	15.8%	0	-	-	-	-	superfamily_Ypt/Rab-GAP domain of gyp1p
LRP5L	91355	genome.wustl.edu	37	22	25755985	25755985	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135772.1	-1	validated	p.A25	0.995	175	0%	161	13%	14	35.7%	-	-	-	HMMPfam_Ldl_recept_b,superfamily_YWTD domain
MYO18B	84700	genome.wustl.edu	37	22	26164494	26164494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032608.5	+1	reviewed	p.A204V	0.009	61	0%	43	18.6%	0	-	possibly_damaging(0.888)	deleterious(0.01)	deleterious(0.753)	NULL
MYO18B	84700	genome.wustl.edu	37	22	26166100	26166100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032608.5	+1	reviewed	p.E512D	1.000	684	0%	415	20.7%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
SEZ6L	23544	genome.wustl.edu	37	22	26736442	26736442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021115.4	+1	validated	p.G686S	0.999	167	0%	63	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
HPS4	89781	genome.wustl.edu	37	22	26849245	26849245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022081.4	-1	reviewed	p.G694D	0.996	180	0%	144	27.8%	23	21.7%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
HPS4	89781	genome.wustl.edu	37	22	26861484	26861484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022081.4	-1	reviewed	p.P247H	0.998	253	0%	164	12.2%	15	6.6%	probably_damaging(0.97)	deleterious(0.04)	deleterious(0.761)	NULL
TFIP11	24144	genome.wustl.edu	37	22	26890122	26890122	+	Missense_Mutation	SNP	G	G	A	rs190854539	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008697.1	-1	validated	p.A714V	0.999	177	0%	134	27.6%	73	13.6%	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	NULL
TFIP11	24144	genome.wustl.edu	37	22	26892761	26892761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008697.1	-1	validated	p.W511R	1.000	251	0%	156	21.8%	24	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TFP11
TFIP11	24144	genome.wustl.edu	37	22	26892856	26892856	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008697.1	-1	validated	e8-1	1.000	215	0%	145	20.7%	2	50%	-	-	-	-
TFIP11	24144	genome.wustl.edu	37	22	26895166	26895166	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008697.1	-1	validated	p.Y411	1.000	110	0%	72	15.3%	17	58.8%	-	-	-	HMMPfam_TFP11
TPST2	8459	genome.wustl.edu	37	22	26928662	26928662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008566.1	-1	reviewed	p.Q364R	1.000	448	0%	356	17.4%	51	27.4%	benign(0.003)	deleterious(0.05)	neutral(0.345)	NULL
MN1	4330	genome.wustl.edu	37	22	28147072	28147072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002430.2	-1	reviewed	p.P1265H	0.993	119	0%	66	16.7%	0	-	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	NULL
TTC28	23331	genome.wustl.edu	37	22	28379665	28379665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145418.1	-1	validated	p.S1997Y	1.000	131	0%	154	22.7%	8	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TTC28	23331	genome.wustl.edu	37	22	28397408	28397408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145418.1	-1	validated	p.G1451D	1.000	75	0%	92	17.4%	5	60%	benign(0.005)	tolerated(0.07)	neutral(0.319)	NULL
HSCB	150274	genome.wustl.edu	37	22	29153152	29153152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172002.3	+1	validated	p.L235I	0.783	151	0%	108	25%	23	8.6%	benign(0.011)	deleterious(0)	neutral(0.445)	NULL
C22orf31	25770	genome.wustl.edu	37	22	29455015	29455015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015370.1	-1	predicted	p.Q196H	0.024	150	0%	135	27.4%	0	-	benign(0.156)	-	-	NULL
KREMEN1	83999	genome.wustl.edu	37	22	29536317	29536317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032045.4	+1	reviewed	p.A408S	1.000	406	0%	240	27.1%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
EWSR1	2130	genome.wustl.edu	37	22	29669838	29669838	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005243.3	+1	reviewed	p.G71*	1.000	299	0%	242	24%	127	1.5%	-	-	-	NULL
EWSR1	2130	genome.wustl.edu	37	22	29678459	29678459	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005243.3	+1	reviewed	p.Y165F	1.000	175	0%	120	23.3%	138	1.4%	unknown(0)	tolerated(0.07)	-	NULL
AP1B1	162	genome.wustl.edu	37	22	29752486	29752486	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127.3	-1	reviewed	p.T215	0.186	163	0%	98	15.3%	40	25%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
THOC5	8563	genome.wustl.edu	37	22	29927952	29927952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002877.1	-1	validated	p.A239T	1.000	165	0%	89	14.6%	29	27.5%	possibly_damaging(0.843)	deleterious(0.02)	deleterious(0.706)	HMMPfam_FimP
NF2	4771	genome.wustl.edu	37	22	30061014	30061014	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000268.3	+1	reviewed	p.V282	0.997	541	0%	325	24.6%	10	70%	-	-	-	HMMPfam_FERM_C,superfamily_PH domain-like
GATSL3	652968	genome.wustl.edu	37	22	30682296	30682296	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037666.2	-1	validated	p.I233	0.976	306	0%	244	22.1%	5	40%	-	-	-	NULL
GATSL3	652968	genome.wustl.edu	37	22	30683474	30683474	+	Missense_Mutation	SNP	G	G	A	rs189381704	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037666.2	-1	validated	p.A87V	0.000	18	0%	35	25.7%	11	45.4%	benign(0.017)	deleterious(0.02)	neutral(0.384)	NULL
RNF215	200312	genome.wustl.edu	37	22	30776178	30776178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017981.1	-1	validated	p.R294H	0.982	40	0%	44	29.5%	8	12.5%	probably_damaging(0.998)	tolerated(0.24)	deleterious(0.512)	NULL
SEC14L4	284904	genome.wustl.edu	37	22	30886113	30886113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174977.3	-1	reviewed	p.R401I	0.000	337	0%	165	20.6%	2	50%	possibly_damaging(0.928)	tolerated(0.24)	neutral(0.413)	NULL
SEC14L4	284904	genome.wustl.edu	37	22	30888467	30888467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174977.3	-1	reviewed	p.L220M	0.999	210	0%	144	22.9%	0	-	benign(0.085)	tolerated(0.06)	neutral(0.329)	HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain
SEC14L4	284904	genome.wustl.edu	37	22	30890140	30890140	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174977.3	-1	reviewed	p.R193*	0.941	352	0%	216	17.1%	1	0%	-	-	-	HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain
GAL3ST1	9514	genome.wustl.edu	37	22	30951412	30951412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004861.1	-1	reviewed	p.C267Y	1.000	37	0%	32	21.9%	34	52.9%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Gal-3-0_sulfotr
DUSP18	150290	genome.wustl.edu	37	22	31059698	31059698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152511.3	-1	validated	p.G98D	1.000	248	0%	152	25.7%	11	27.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
OSBP2	23762	genome.wustl.edu	37	22	31283464	31283464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030758.3	+1	reviewed	p.R387W	0.982	52	0%	53	20.8%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OSBP2	23762	genome.wustl.edu	37	22	31289487	31289487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030758.3	+1	reviewed	p.H676Q	1.000	72	0%	53	32.1%	10	60%	probably_damaging(0.961)	deleterious(0.04)	deleterious(0.753)	HMMPfam_Oxysterol_BP
MORC2	22880	genome.wustl.edu	37	22	31334182	31334182	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014941.1	-1	provisional	p.E300*	1.000	333	0%	164	10.4%	22	0%	-	-	-	NULL
SMTN	6525	genome.wustl.edu	37	22	31491378	31491378	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134270.1	+1	reviewed	p.G574	0.000	134	0%	143	25.2%	28	3.5%	-	-	-	NULL
SMTN	6525	genome.wustl.edu	37	22	31493042	31493042	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134270.1	+1	reviewed	p.S695	0.960	96	0%	137	23.4%	25	8%	-	-	-	NULL
SMTN	6525	genome.wustl.edu	37	22	31494748	31494748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134270.1	+1	reviewed	p.A752E	1.000	22	0%	15	26.7%	27	7.4%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SMTN	6525	genome.wustl.edu	37	22	31495849	31495849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_134270.1	+1	reviewed	p.R857H	1.000	203	0%	249	11.6%	60	8.3%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
INPP5J	27124	genome.wustl.edu	37	22	31529190	31529190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002837.1	+1	validated	p.R399H	1.000	157	0.6%	133	15.8%	9	77.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LIMK2	3985	genome.wustl.edu	37	22	31644600	31644600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000438187	+1	known	p.E18D	1.000	116	0%	61	24.6%	0	-	unknown(0)	-	-	NULL
LIMK2	3985	genome.wustl.edu	37	22	31658167	31658167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031801.1	+1	reviewed	p.P179H	1.000	242	0%	161	21.7%	17	47%	possibly_damaging(0.653)	deleterious(0.01)	deleterious(0.635)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
EIF4ENIF1	56478	genome.wustl.edu	37	22	31843546	31843546	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000445424	-1	known	p.A41V	1.000	143	0%	58	31%	25	36%	-	-	-	NULL
EIF4ENIF1	56478	genome.wustl.edu	37	22	31854487	31854487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019843.3	-1	reviewed	p.L313I	1.000	129	0%	64	28.1%	12	33.3%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_EIF4E-T
SFI1	9814	genome.wustl.edu	37	22	31953014	31953014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007467.1	+1	validated	p.A211S	0.916	207	0%	47	21.3%	19	31.5%	possibly_damaging(0.88)	deleterious(0)	deleterious(0.788)	NULL
PRR14L	253143	genome.wustl.edu	37	22	32109646	32109646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173566.2	-1	validated	p.E1393D	0.000	286	0%	147	19.7%	4	25%	possibly_damaging(0.93)	tolerated(0.28)	neutral(0.408)	NULL
PRR14L	253143	genome.wustl.edu	37	22	32112989	32112989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173566.2	-1	validated	p.P279H	0.997	622	0%	276	22.1%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRR14L	253143	genome.wustl.edu	37	22	32113139	32113139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173566.2	-1	validated	p.G229D	0.000	809	0%	340	20%	3	66.6%	benign(0.002)	tolerated(0.54)	neutral(0.007)	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32211030	32211030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014662.2	+1	validated	p.V500I	0.999	156	0%	59	22%	5	60%	benign(0.06)	tolerated(0.39)	neutral(0.020)	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32229913	32229913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014662.2	+1	validated	p.R706M	1.000	485	0%	211	18.5%	2	100%	possibly_damaging(0.843)	deleterious(0.03)	deleterious(0.688)	NULL
SLC5A4	6527	genome.wustl.edu	37	22	32621755	32621755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014227.2	-1	validated	p.V446F	0.002	301	0.3%	158	14.6%	2	0%	benign(0.133)	deleterious(0.01)	neutral(0.417)	HMMPfam_SSF
RFPL3-AS1	10737	genome.wustl.edu	37	22	32756051	32756051	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_001450.2	-1	provisional	NULL	0.000	39	0%	39	20.5%	0	-	-	-	-	-
C22orf28	51493	genome.wustl.edu	37	22	32788315	32788315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014306.4	-1	validated	p.R441H	1.000	224	0%	185	25.9%	185	40%	benign(0.07)	deleterious(0.03)	neutral(0.369)	HMMPfam_UPF0027,superfamily_Hypothetical protein PH1602
C22orf28	51493	genome.wustl.edu	37	22	32789880	32789880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014306.4	-1	validated	p.A430V	1.000	256	0%	200	21%	173	39.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_UPF0027,superfamily_Hypothetical protein PH1602
C22orf28	51493	genome.wustl.edu	37	22	32802747	32802747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014306.4	-1	validated	p.R81Q	1.000	212	0%	147	18.4%	52	53.8%	benign(0.03)	tolerated(0.23)	neutral(0.043)	HMMPfam_UPF0027,PatternScan_UPF0027,superfamily_Hypothetical protein PH1602
SYN3	8224	genome.wustl.edu	37	22	33327439	33327439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003490.3	-1	reviewed	p.A133T	0.945	309	0%	121	22.3%	0	-	unknown(0)	deleterious(0.01)	-	HMMPfam_Synapsin,superfamily_PreATP-grasp domain
LARGE	9215	genome.wustl.edu	37	22	33700306	33700306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004737.4	-1	reviewed	p.R547C	1.000	106	0%	65	24.6%	15	73.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TOM1	10043	genome.wustl.edu	37	22	35713945	35713945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135732.1	+1	reviewed	p.T43M	1.000	135	0%	79	21.5%	22	31.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_VHS,superfamily_ENTH_VHS,HMMSmart_VHS
TOM1	10043	genome.wustl.edu	37	22	35743315	35743315	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NR_024194.1	+1	reviewed	NULL	0.005	55	0%	57	19.3%	53	30.1%	-	-	-	-
MCM5	4174	genome.wustl.edu	37	22	35808621	35808621	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006739.3	+1	reviewed	p.G346	0.681	35	0%	48	16.7%	95	35.7%	-	-	-	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
RASD2	23551	genome.wustl.edu	37	22	35947819	35947819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014310.3	+1	reviewed	p.E181K	1.000	57	0%	45	31.1%	2	0%	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMSmart_RAS,HMMPfam_Ras,superfamily_SSF52540
APOL5	80831	genome.wustl.edu	37	22	36124810	36124810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_030642.1	+1	reviewed	p.Q389H	0.015	100	0%	52	26.9%	0	-	possibly_damaging(0.539)	-	-	NULL
APOL4	80832	genome.wustl.edu	37	22	36587766	36587766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000352371	-1	known	p.R137I	0.002	159	0%	65	20%	18	27.7%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_ApoL
MYH9	4627	genome.wustl.edu	37	22	36745263	36745263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002473.4	-1	reviewed	p.D7N	1.000	243	0%	217	22.6%	45	31.1%	benign(0.003)	tolerated(0.08)	neutral(0.300)	NULL
TXN2	25828	genome.wustl.edu	37	22	36863944	36863944	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012473.3	-1	reviewed	p.V136	1.000	162	0%	121	27.3%	243	40.7%	-	-	-	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
EIF3D	8664	genome.wustl.edu	37	22	36919229	36919229	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000412520	-1	known	p.A164	0.000	362	0%	240	11.3%	0	-	-	-	-	NULL
TEX33	339669	genome.wustl.edu	37	22	37396018	37396018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178552.3	-1	validated	p.K81R	0.002	253	0%	189	29.6%	0	-	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
C1QTNF6	114904	genome.wustl.edu	37	22	37578506	37578506	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031910.3	-1	validated	p.L187	0.001	90	0%	65	18.5%	72	34.7%	-	-	-	HMMPfam_C1q,superfamily_TNF_like
C1QTNF6	114904	genome.wustl.edu	37	22	37581308	37581308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031910.3	-1	validated	p.P80H	0.557	88	0%	57	24.6%	39	41%	benign(0.032)	tolerated(0.08)	neutral(0.301)	NULL
MFNG	4242	genome.wustl.edu	37	22	37875474	37875474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002405.3	-1	reviewed	p.R157K	0.001	95	0%	91	24.2%	12	8.3%	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_Fringe
CARD10	29775	genome.wustl.edu	37	22	37903887	37903887	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014550.3	-1	reviewed	p.R380	1.000	202	0%	201	24.4%	20	80%	-	-	-	NULL
CARD10	29775	genome.wustl.edu	37	22	37912213	37912213	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014550.3	-1	reviewed	p.Q156*	1.000	25	0%	22	31.8%	2	0%	-	-	-	NULL
LGALS1	3956	genome.wustl.edu	37	22	38074528	38074528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002305.3	+1	reviewed	p.C43Y	1.000	45	0%	37	13.5%	1210	15.5%	possibly_damaging(0.665)	tolerated(0.19)	neutral(0.285)	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
TRIOBP	11078	genome.wustl.edu	37	22	38097397	38097397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039141.2	+1	reviewed	p.L9M	0.006	275	0%	219	22.8%	1	0%	benign(0.073)	tolerated(0.25)	neutral(0.042)	NULL
TRIOBP	11078	genome.wustl.edu	37	22	38121176	38121176	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039141.2	+1	reviewed	p.C871	0.977	219	0.5%	186	23.7%	0	-	-	-	-	NULL
TRIOBP	11078	genome.wustl.edu	37	22	38122112	38122112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039141.2	+1	reviewed	p.E1183D	1.000	105	0%	133	21.1%	1	0%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	NULL
H1F0	3005	genome.wustl.edu	37	22	38201758	38201758	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005318.3	+1	reviewed	p.K69	1.000	80	0%	175	26.3%	191	42.9%	-	-	-	"HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"
GCAT	23464	genome.wustl.edu	37	22	38211144	38211144	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014291.3	+1	reviewed	p.L196	1.000	68	0%	88	33%	49	36.7%	-	-	-	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major
GALR3	8484	genome.wustl.edu	37	22	38219661	38219661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003614.1	+1	reviewed	p.Y83C	1.000	124	0%	142	19%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MICALL1	85377	genome.wustl.edu	37	22	38321878	38321878	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000454685	+1	known	p.G9*	0.221	60	0%	42	19%	17	35.2%	benign(0.071)	tolerated(0.51)	neutral(0.014)	NULL
BAIAP2L2	80115	genome.wustl.edu	37	22	38503865	38503865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025045.4	-1	validated	p.E90D	1.000	205	0%	190	15.3%	101	19.8%	benign(0.32)	tolerated(0.29)	neutral(0.129)	HMMPfam_IMD
PLA2G6	8398	genome.wustl.edu	37	22	38519198	38519198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003560.2	-1	reviewed	p.A499T	1.000	115	0%	92	22.8%	8	50%	possibly_damaging(0.555)	tolerated(0.11)	neutral(0.461)	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
KCNJ4	3761	genome.wustl.edu	37	22	38823383	38823383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004981.1	-1	reviewed	p.R252H	1.000	109	0%	134	25.4%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_IRK,superfamily_Ig_E-set
KDELR3	11015	genome.wustl.edu	37	22	38877359	38877359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016657.1	+1	reviewed	p.N165S	1.000	398	0%	251	11.2%	16	18.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ER_lumen_recept
DDX17	10521	genome.wustl.edu	37	22	38881962	38881962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098504.1	-1	reviewed	p.P725H	0.997	284	0%	161	27.3%	75	41.3%	unknown(0)	deleterious(0)	-	NULL
ENSG00000184949	0	genome.wustl.edu	37	22	38993317	38993317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000355830	-1	known	p.C475Y	0.000	339	0%	126	16.7%	0	-	benign(0.284)	tolerated(0.09)	neutral(0.383)	NULL
CBY1	25776	genome.wustl.edu	37	22	39069225	39069225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002880.1	+1	reviewed	p.S122N	0.004	330	0%	240	24.2%	59	33.8%	benign(0.002)	tolerated(0.54)	neutral(0.007)	NULL
SUN2	25777	genome.wustl.edu	37	22	39132275	39132275	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015374.1	-1	validated	p.H717	0.853	98	0%	92	22.8%	67	26.8%	-	-	-	NULL
APOBEC3C	27350	genome.wustl.edu	37	22	39414043	39414043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014508.2	+1	reviewed	p.D149E	0.000	249	0.4%	214	24.3%	47	25.5%	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_APOBEC_C,superfamily_Cytidine deaminase-like
APOBEC3D	140564	genome.wustl.edu	37	22	39427762	39427762	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152426.3	+1	reviewed	p.L276	0.004	298	0%	264	12.1%	18	16.6%	-	-	-	HMMPfam_APOBEC_N,PatternScan_CYT_DCMP_DEAMINASES,superfamily_Cytidine deaminase-like
SYNGR1	9145	genome.wustl.edu	37	22	39770532	39770532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004711.4	+1	reviewed	p.A104V	0.995	28	0%	21	28.6%	26	38.4%	benign(0.054)	tolerated(1)	neutral(0.004)	HMMPfam_MARVEL
TAB1	10454	genome.wustl.edu	37	22	39813853	39813853	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006116.2	+1	reviewed	p.V183	0.006	83	0%	68	30.9%	24	50%	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
SMCR7L	54471	genome.wustl.edu	37	22	39907423	39907423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019008.4	+1	validated	p.A42T	1.000	81	0%	56	25%	15	20%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ENTHD1	150350	genome.wustl.edu	37	22	40161568	40161568	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152512.3	-1	provisional	p.D293E	0.122	145	0%	41	19.5%	0	-	benign(0.073)	deleterious(0)	neutral(0.450)	NULL
TNRC6B	23112	genome.wustl.edu	37	22	40642025	40642025	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015088.2	+1	validated	p.K4	1.000	583	0%	159	22.6%	3	33.3%	-	-	-	NULL
TNRC6B	23112	genome.wustl.edu	37	22	40661668	40661668	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000446273	+1	known	p.G221D	1.000	125	0%	144	22.9%	1	0%	-	-	-	NULL
TNRC6B	23112	genome.wustl.edu	37	22	40666285	40666285	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001024843.1	+1	validated	e6+1	1.000	74	0%	58	25.9%	0	-	-	-	-	-
TNRC6B	23112	genome.wustl.edu	37	22	40719092	40719092	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015088.2	+1	validated	p.S1673	0.994	58	0%	50	24%	10	50%	-	-	-	NULL
ADSL	158	genome.wustl.edu	37	22	40746038	40746038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000026.2	+1	reviewed	p.T119N	1.000	249	0%	240	27.9%	66	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Lyase_1,superfamily_L-aspartase-like
SGSM3	27352	genome.wustl.edu	37	22	40801816	40801816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015705.4	+1	validated	p.R261H	0.951	22	0%	22	31.8%	71	38%	benign(0.028)	tolerated(0.06)	neutral(0.324)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
MKL1	57591	genome.wustl.edu	37	22	40807616	40807616	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020831.3	-1	validated	p.P858	0.869	111	0%	93	23.7%	55	23.6%	-	-	-	NULL
MKL1	57591	genome.wustl.edu	37	22	40814817	40814817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020831.3	-1	validated	p.R542Q	1.000	16	0%	13	38.5%	6	50%	benign(0.017)	tolerated(0.62)	neutral(0.005)	NULL
MCHR1	2847	genome.wustl.edu	37	22	41076992	41076992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005297.3	+1	reviewed	p.I110T	1.000	179	0%	128	32%	1	0%	unknown(0)	deleterious(0)	-	superfamily_Family A G protein-coupled receptor-like
XPNPEP3	63929	genome.wustl.edu	37	22	41320407	41320407	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022098.2	+1	validated	p.L426	0.597	355	0%	165	20.6%	7	42.8%	-	-	-	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
L3MBTL2	83746	genome.wustl.edu	37	22	41613172	41613172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031488.4	+1	validated	p.S189I	1.000	151	0%	127	26.8%	13	30.7%	possibly_damaging(0.722)	deleterious(0.01)	deleterious(0.667)	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
L3MBTL2	83746	genome.wustl.edu	37	22	41615452	41615452	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000449635	+1	known	p.D158Y	0.999	294	0%	200	20%	13	30.7%	-	-	-	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
L3MBTL2	83746	genome.wustl.edu	37	22	41626196	41626196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031488.4	+1	validated	p.A687T	0.004	53	0%	68	16.2%	64	37.5%	benign(0.002)	tolerated(0.15)	neutral(0.241)	NULL
TOB2	10766	genome.wustl.edu	37	22	41833192	41833192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016272.3	-1	validated	p.S53Y	1.000	103	0%	89	18%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BTG,HMMSmart_btg1,PatternScan_BTG_1
ACO2	50	genome.wustl.edu	37	22	41903960	41903960	+	Silent	SNP	C	C	T	rs138373868	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098.2	+1	reviewed	p.S113	0.196	37	0%	26	19.2%	59	33.8%	-	-	-	HMMPfam_Aconitase,superfamily_Aconitase_N
ACO2	50	genome.wustl.edu	37	22	41907953	41907953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098.2	+1	reviewed	p.G169E	1.000	158	0%	128	28.1%	63	46%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aconitase,superfamily_Aconitase_N
ACO2	50	genome.wustl.edu	37	22	41919217	41919217	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098.2	+1	reviewed	p.I435	1.000	256	0%	222	27.9%	108	30.5%	-	-	-	HMMPfam_Aconitase,superfamily_Aconitase_N
ACO2	50	genome.wustl.edu	37	22	41922402	41922402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098.2	+1	reviewed	p.R633H	1.000	77	0%	58	10.3%	269	18.2%	benign(0.009)	tolerated(0.33)	neutral(0.025)	HMMPfam_Aconitase_C,superfamily_Aconitase/3IPM_dehydase_swvl
POLR3H	171568	genome.wustl.edu	37	22	41925341	41925341	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018050.2	-1	validated	e6-1	1.000	139	0%	102	24.5%	7	42.8%	-	-	-	-
POLR3H	171568	genome.wustl.edu	37	22	41928741	41928741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018050.2	-1	validated	p.R73C	1.000	131	0%	128	14.1%	62	11.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_IG_MHC,HMMPfam_RNA_pol_Rpb7_N,superfamily_N-terminal heterodimerisation domain of RBP4 (RpoE)
CSDC2	27254	genome.wustl.edu	37	22	41969730	41969730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014460.3	+1	validated	p.G83D	1.000	193	0%	170	22.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CSD,HMMSmart_CSP,superfamily_Nucleic_acid_OB,PatternScan_COLD_SHOCK
XRCC6	2547	genome.wustl.edu	37	22	42059625	42059625	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001469.3	+1	reviewed	e12-1	0.992	129	0%	117	20.5%	0	-	-	-	-	-
MEI1	150365	genome.wustl.edu	37	22	42180644	42180644	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152513.3	+1	validated	p.R1068*	0.980	86	0%	61	24.6%	8	0%	-	-	-	NULL
CCDC134	79879	genome.wustl.edu	37	22	42209354	42209354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024821.2	+1	validated	p.N133D	1.000	167	0%	108	15.7%	2	50%	probably_damaging(0.998)	tolerated(0.28)	deleterious(0.506)	NULL
CENPM	79019	genome.wustl.edu	37	22	42342501	42342501	+	Splice_Site	SNP	C	C	A	rs62240990		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024053.3	-1	validated	e2-1	1.000	35	0%	23	26.1%	10	70%	-	-	-	-
WBP2NL	164684	genome.wustl.edu	37	22	42418278	42418278	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152613.2	+1	validated	p.T144	0.000	591	0%	421	24.9%	1	100%	-	-	-	HMMPfam_WWbp
WBP2NL	164684	genome.wustl.edu	37	22	42422927	42422927	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152613.2	+1	validated	p.Y224	0.000	175	0.6%	177	26%	2	50%	-	-	-	NULL
FAM109B	150368	genome.wustl.edu	37	22	42473729	42473729	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002034.2	+1	validated	p.L144	0.008	55	0%	58	13.8%	7	14.2%	-	-	-	NULL
C22orf32	91689	genome.wustl.edu	37	22	42477948	42477948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033318.3	+1	predicted	p.R69H	1.000	455	0.2%	485	21.2%	118	23.7%	benign(0.386)	-	-	HMMPfam_DDDD
CYP2D6	1565	genome.wustl.edu	37	22	42523476	42523476	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000106.4	-1	reviewed	p.I382	0.458	176	0%	166	13.9%	4	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
TCF20	6942	genome.wustl.edu	37	22	42605940	42605940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005650.1	-1	reviewed	p.R1791H	1.000	90	0%	71	18.3%	34	50%	possibly_damaging(0.911)	deleterious(0.01)	deleterious(0.768)	NULL
TCF20	6942	genome.wustl.edu	37	22	42607583	42607583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005650.1	-1	reviewed	p.E1243D	0.994	411	0.5%	187	21.9%	22	63.6%	probably_damaging(0.988)	tolerated(0.14)	deleterious(0.687)	NULL
RRP7A	27341	genome.wustl.edu	37	22	42914037	42914037	+	Missense_Mutation	SNP	G	G	T	rs645556		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015703.4	-1	validated	p.L64I	1.000	217	0%	237	11.8%	131	18.3%	benign(0.188)	tolerated(0.25)	neutral(0.054)	HMMSmart_RRM,superfamily_SSF54928
SERHL2	253190	genome.wustl.edu	37	22	42967167	42967167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014509.3	+1	provisional	p.A230V	0.000	242	0%	259	22.4%	4	25%	benign(0.001)	tolerated(0.05)	neutral(0.345)	superfamily_alpha/beta-Hydrolases
SERHL2	253190	genome.wustl.edu	37	22	42967168	42967168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000340239	+1	known	p.R192H	0.000	244	0%	261	26.1%	4	0%	benign(0.002)	tolerated(0.18)	neutral(0.056)	NULL
POLDIP3	84271	genome.wustl.edu	37	22	42991586	42991586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032311.3	-1	reviewed	p.T283I	1.000	306	0%	242	20.2%	41	43.9%	probably_damaging(0.995)	tolerated(0.33)	deleterious(0.482)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
CYB5R3	1727	genome.wustl.edu	37	22	43024216	43024216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000398.6	-1	reviewed	p.Q135H	0.920	142	0%	154	25.3%	162	19.1%	unknown(0)	-	-	HMMPfam_FAD_binding_6,superfamily_Riboflavin synthase domain-like
ARFGAP3	26286	genome.wustl.edu	37	22	43218333	43218333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014570.4	-1	reviewed	p.A252V	0.034	640	0%	303	17.2%	15	46.6%	benign(0)	tolerated(0.97)	-	NULL
TTLL1	25809	genome.wustl.edu	37	22	43442572	43442572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012263.4	-1	validated	p.A329V	0.996	471	0%	298	21.5%	41	48.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
TTLL1	25809	genome.wustl.edu	37	22	43455464	43455464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012263.4	-1	validated	p.R273C	0.998	85	0%	64	12.5%	33	21.2%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
MCAT	27349	genome.wustl.edu	37	22	43529112	43529112	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173467.4	-1	reviewed	p.S370	0.000	106	0%	112	24.1%	116	57.7%	-	-	-	HMMPfam_Acyl_transf_1
TTLL12	23170	genome.wustl.edu	37	22	43579012	43579012	+	Missense_Mutation	SNP	G	G	T	rs75721440	byCluster;byFrequency;by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015140.3	-1	validated	p.S107R	0.304	131	0.8%	143	33.6%	36	47.2%	possibly_damaging(0.929)	tolerated(0.38)	neutral(0.394)	NULL
SCUBE1	80274	genome.wustl.edu	37	22	43610139	43610139	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173050.2	-1	validated	p.D670	0.948	21	0%	33	18.2%	4	0%	-	-	-	superfamily_Grow_fac_recept,HMMPfam_GCC2_GCC3
MPPED1	758	genome.wustl.edu	37	22	43831047	43831047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001044370.1	+1	validated	p.Q106H	1.000	84	0%	89	27%	0	-	probably_damaging(0.967)	tolerated(0.07)	deleterious(0.728)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
SULT4A1	25830	genome.wustl.edu	37	22	44234874	44234874	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014351.3	-1	reviewed	e4-1	1.000	105	0%	118	25.4%	0	-	-	-	-	-
PNPLA5	150379	genome.wustl.edu	37	22	44285222	44285222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138814.3	-1	reviewed	p.P230L	0.925	145	0%	165	19.4%	0	-	possibly_damaging(0.808)	deleterious(0)	deleterious(0.748)	NULL
PNPLA5	150379	genome.wustl.edu	37	22	44285368	44285368	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138814.3	-1	reviewed	p.P181	0.000	277	0.7%	300	13.3%	0	-	-	-	-	HMMPfam_Patatin
PARVG	64098	genome.wustl.edu	37	22	44589691	44589691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001137605.1	+1	validated	p.D191N	0.116	469	0%	402	28.4%	45	22.2%	benign(0.249)	tolerated(0.48)	neutral(0.036)	superfamily_Calponin-homology domain CH-domain
KIAA1644	85352	genome.wustl.edu	37	22	44681523	44681523	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000266255	-1	known	p.Q35*	1.000	264	0%	179	25.1%	2	0%	-	-	-	NULL
LDOC1L	84247	genome.wustl.edu	37	22	44893054	44893054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032287.2	-1	validated	p.S128Y	0.999	93	0%	94	19.1%	5	40%	probably_damaging(0.964)	deleterious(0.02)	deleterious(0.789)	NULL
ENSG00000187012	0	genome.wustl.edu	37	22	44967981	44967981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000334566	+1	known	p.A102D	0.000	211	0%	112	22.3%	0	-	unknown(0)	-	-	NULL
PRR5-ARHGAP8	553158	genome.wustl.edu	37	22	45218317	45218317	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000515632	+1	known	p.T205M	0.006	306	0%	323	19.8%	28	57.1%	-	-	-	HMMSmart_SM00516,superfamily_CRAL/TRIO domain
PRR5-ARHGAP8	553158	genome.wustl.edu	37	22	45243898	45243898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181334.4	+1	reviewed	p.T275N	0.391	41	0%	38	28.9%	41	41.4%	possibly_damaging(0.459)	tolerated(0.4)	neutral(0.166)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
SMC1B	27127	genome.wustl.edu	37	22	45758796	45758796	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_148674.3	-1	validated	p.K844T	0.996	713	0%	307	24.4%	0	-	possibly_damaging(0.813)	tolerated(0.2)	neutral(0.356)	HMMPfam_SMC_N,superfamily_SSF52540
FBLN1	2192	genome.wustl.edu	37	22	45960820	45960820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006485.3	+1	reviewed	p.C585Y	0.000	179	0.6%	199	24.1%	0	-	benign(0.003)	deleterious(0.04)	neutral(0.349)	NULL
ATXN10	25814	genome.wustl.edu	37	22	46085606	46085606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013236.3	+1	reviewed	p.R44M	0.677	364	0%	247	11.7%	56	19.6%	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	superfamily_ARM-type_fold
PKDREJ	10343	genome.wustl.edu	37	22	46652659	46652659	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006071.1	-1	reviewed	p.S2187	0.000	167	0.6%	193	20.2%	0	-	-	-	-	NULL
PKDREJ	10343	genome.wustl.edu	37	22	46653595	46653595	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006071.1	-1	reviewed	p.T1875	0.942	343	0.3%	431	22%	0	-	-	-	-	HMMPfam_PKD_channel
PKDREJ	10343	genome.wustl.edu	37	22	46656943	46656943	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006071.1	-1	reviewed	p.I759	0.000	113	0%	219	24.2%	0	-	-	-	-	HMMPfam_REJ
TTC38	55020	genome.wustl.edu	37	22	46669895	46669895	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000422713	+1	known	p.R49K	0.610	59	0%	59	23.7%	24	41.6%	-	-	-	superfamily_TPR-like
TTC38	55020	genome.wustl.edu	37	22	46684356	46684356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017931.2	+1	validated	p.P318H	0.805	48	0%	59	18.6%	47	31.9%	benign(0.003)	tolerated(0.29)	neutral(0.029)	NULL
GTSE1	51512	genome.wustl.edu	37	22	46722347	46722347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016426.6	+1	reviewed	p.S507I	0.998	106	0%	70	28.6%	16	43.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CELSR1	9620	genome.wustl.edu	37	22	46773009	46773009	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014246.1	-1	reviewed	p.L2511	0.920	120	0%	112	25.9%	46	36.9%	-	-	-	HMMPfam_7tm_2
CELSR1	9620	genome.wustl.edu	37	22	46776689	46776689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014246.1	-1	reviewed	p.L2418M	0.944	65	0%	65	26.2%	21	47.6%	possibly_damaging(0.609)	tolerated(0.12)	deleterious(0.472)	HMMPfam_GPS,HMMSmart_SM00303,superfamily_Concanavalin A-like lectins/glucanases
CELSR1	9620	genome.wustl.edu	37	22	46792522	46792522	+	Silent	SNP	G	G	A	rs144990969	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014246.1	-1	reviewed	p.Y1941	0.995	40	0%	39	25.6%	41	48.7%	-	-	-	HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,superfamily_EGF/Laminin
GRAMD4	23151	genome.wustl.edu	37	22	47022754	47022754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015124.2	+1	validated	p.D20N	1.000	181	0%	197	25.4%	9	22.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
GRAMD4	23151	genome.wustl.edu	37	22	47061592	47061592	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000456069	+1	known	p.P89S	1.000	159	0%	184	28.8%	22	31.8%	-	-	-	NULL
CERK	64781	genome.wustl.edu	37	22	47108066	47108066	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022766.5	-1	validated	p.I168	0.959	740	0%	405	26.2%	15	33.3%	-	-	-	HMMPfam_DAGK_cat,HMMSmart_DAGKc
TBC1D22A	25771	genome.wustl.edu	37	22	47370194	47370194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014346.1	+1	provisional	p.E342K	1.000	43	0%	39	30.8%	34	41.1%	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
BRD1	23774	genome.wustl.edu	37	22	50187700	50187700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014577.1	-1	reviewed	p.P781S	0.004	36	0%	52	19.2%	19	21%	probably_damaging(0.988)	tolerated(0.38)	neutral(0.455)	NULL
BRD1	23774	genome.wustl.edu	37	22	50191478	50191478	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014577.1	-1	reviewed	p.P691	0.199	26	0%	32	40.6%	17	41.1%	-	-	-	NULL
ALG12	79087	genome.wustl.edu	37	22	50297715	50297715	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024105.3	-1	reviewed	e9-1	1.000	113	0%	96	21.9%	8	87.5%	-	-	-	-
ALG12	79087	genome.wustl.edu	37	22	50303694	50303694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024105.3	-1	reviewed	p.R171H	0.879	49	0%	32	31.2%	35	45.7%	benign(0.272)	tolerated(0.13)	neutral(0.282)	HMMPfam_Glyco_transf_22
TUBGCP6	85378	genome.wustl.edu	37	22	50656361	50656361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020461.3	-1	reviewed	p.H1785R	1.000	41	0%	37	21.6%	18	44.4%	benign(0.023)	tolerated(0.66)	neutral(0.004)	NULL
TUBGCP6	85378	genome.wustl.edu	37	22	50656463	50656463	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020461.3	-1	reviewed	p.L1751H	1.000	45	0%	47	31.9%	21	23.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TUBGCP6	85378	genome.wustl.edu	37	22	50657050	50657050	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020461.3	-1	reviewed	e22-1	1.000	50	0%	38	21.1%	9	100%	-	-	-	-
TUBGCP6	85378	genome.wustl.edu	37	22	50662602	50662602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020461.3	-1	reviewed	p.K746N	0.996	93	0%	172	22.7%	13	15.3%	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	HMMPfam_Spc97_Spc98
TUBGCP6	85378	genome.wustl.edu	37	22	50666409	50666409	+	Missense_Mutation	SNP	C	C	T	rs182347943	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020461.3	-1	reviewed	p.V447I	0.996	89	0%	103	11.7%	15	6.6%	probably_damaging(0.975)	tolerated(0.14)	deleterious(0.666)	HMMPfam_Spc97_Spc98
MAPK12	6300	genome.wustl.edu	37	22	50694561	50694561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002969.3	-1	reviewed	p.Y191C	1.000	48	0%	76	26.3%	17	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MAPK11	5600	genome.wustl.edu	37	22	50704717	50704717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002751.5	-1	reviewed	p.R234C	0.992	125	0%	209	17.7%	11	9%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PLXNB2	23654	genome.wustl.edu	37	22	50726405	50726405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012401.2	-1	validated	p.S481F	0.070	12	0%	10	50%	21	76.1%	possibly_damaging(0.924)	deleterious(0.04)	deleterious(0.722)	HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold
PLXNB2	23654	genome.wustl.edu	37	22	50728216	50728216	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012401.2	-1	validated	p.C266*	0.211	86	0%	80	28.7%	43	11.6%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
FAM116B	414918	genome.wustl.edu	37	22	50752273	50752273	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001794.3	-1	validated	p.R391	0.897	103	0%	128	22.7%	38	34.2%	-	-	-	HMMPfam_DUF1630
FAM116B	414918	genome.wustl.edu	37	22	50754517	50754517	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001794.3	-1	validated	e8-1	1.000	68	0%	131	26.7%	0	-	-	-	-	-
PPP6R2	9701	genome.wustl.edu	37	22	50832419	50832419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014678.3	+1	validated	p.M28V	0.998	149	0%	71	15.5%	27	18.5%	possibly_damaging(0.858)	deleterious(0.01)	deleterious(0.737)	NULL
PPP6R2	9701	genome.wustl.edu	37	22	50879288	50879288	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014678.3	+1	validated	p.V777	0.002	82	0%	111	14.4%	46	23.9%	-	-	-	NULL
MIOX	55586	genome.wustl.edu	37	22	50926445	50926445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017584.5	+1	validated	p.A103V	0.976	74	0%	79	20.3%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF706
MIOX	55586	genome.wustl.edu	37	22	50926760	50926760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017584.5	+1	validated	p.G133R	0.976	231	0%	274	13.1%	2	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DUF706
LMF2	91289	genome.wustl.edu	37	22	50943489	50943489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033200.2	-1	validated	p.S392R	1.000	43	0%	63	11.1%	50	12%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1222
LMF2	91289	genome.wustl.edu	37	22	50945333	50945333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033200.2	-1	validated	p.Q51K	0.998	17	0%	25	20%	43	30.2%	possibly_damaging(0.442)	tolerated(0.41)	neutral(0.159)	NULL
NCAPH2	29781	genome.wustl.edu	37	22	50960444	50960444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152299.3	+1	reviewed	p.R380W	0.159	160	0%	190	26.3%	108	48.1%	possibly_damaging(0.683)	tolerated(0.1)	deleterious(0.530)	HMMPfam_DUF1032
NCAPH2	29781	genome.wustl.edu	37	22	50960445	50960445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152299.3	+1	reviewed	p.R380Q	0.188	156	0%	192	19.8%	107	39.2%	probably_damaging(0.999)	tolerated(0.41)	deleterious(0.505)	HMMPfam_DUF1032
SCO2	9997	genome.wustl.edu	37	22	50962321	50962321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005138.2	-1	reviewed	p.V174I	0.032	62	0%	82	9.8%	190	13.6%	benign(0.115)	tolerated(0.32)	neutral(0.033)	HMMPfam_SCO1-SenC,superfamily_Thiordxn-like_fd
TYMP	1890	genome.wustl.edu	37	22	50965822	50965822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000419305	-1	known	p.D281Y	0.000	33	0%	56	30.4%	16	6.2%	-	-	-	HMMPfam_Glycos_transf_3
TYMP	1890	genome.wustl.edu	37	22	50966943	50966943	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113755.1	-1	reviewed	p.Q172*	1.000	177	0%	249	11.6%	513	2.1%	-	-	-	HMMPfam_Glycos_transf_3,superfamily_Glyco_trans_3
TYMP	1890	genome.wustl.edu	37	22	50967759	50967759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000426603	-1	known	p.A127V	1.000	44	0%	50	10%	405	7.4%	-	-	-	NULL
SYCE3	644186	genome.wustl.edu	37	22	50989713	50989713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001123225.1	-1	predicted	p.N76K	1.000	91	0%	121	22.3%	17	41.1%	benign(0.081)	deleterious(0)	neutral(0.451)	NULL
SYCE3	644186	genome.wustl.edu	37	22	50994758	50994758	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001123225.1	-1	predicted	p.E26V	1.000	706	0%	798	25.2%	9	22.2%	benign(0.201)	deleterious(0)	neutral(0.464)	NULL
CPT1B	1375	genome.wustl.edu	37	22	51008773	51008773	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145135.1	-1	reviewed	p.F697	0.875	94	0%	115	26.1%	41	36.5%	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
CPT1B	1375	genome.wustl.edu	37	22	51012828	51012828	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145135.1	-1	reviewed	p.V302	1.000	193	0%	264	23.5%	34	23.5%	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
CPT1B	1375	genome.wustl.edu	37	22	51015795	51015795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145135.1	-1	reviewed	p.S80Y	1.000	142	0%	164	17.1%	9	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CHKB	1120	genome.wustl.edu	37	22	51018831	51018831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005198.4	-1	reviewed	p.S231Y	0.105	486	0%	566	23%	40	17.5%	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)
MAPK8IP2	23542	genome.wustl.edu	37	22	51044080	51044080	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012324.3	+1	reviewed	p.A644D	1.000	44	0%	73	15.1%	16	25%	-	-	-	NULL
KIR2DL5B	553128	genome.wustl.edu	37	GL000209.1	18663	18663	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000400875	+1	known	p.T321	NULL	780	0%	381	39.4%	0	-	-	-	-	NULL
KIR2DL5B	553128	genome.wustl.edu	37	GL000209.1	88481	88481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000400846	+1	known	p.L81F	NULL	162	0%	108	50%	0	-	benign(0.007)	tolerated(0.31)	neutral(0.027)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
ENSG00000211459	0	genome.wustl.edu	37	MT	653	654	+	RNA	INS	-	-	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000389680	+1	known	NULL	NULL	-	-	-	-	-	-	-	-	-	-
PLCXD1	55344	genome.wustl.edu	37	X	207318	207318	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018390.3	+1	reviewed	p.L90	0.004	221	0%	208	22.1%	18	33.3%	-	-	-	superfamily_PLC-like_Pdiesterase_TIM-brl
GTPBP6	8225	genome.wustl.edu	37	X	224093	224093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000429643	-1	known	p.A248V	0.004	84	0%	102	15.7%	106	23.5%	benign(0.008)	tolerated(0.3)	neutral(0.029)	superfamily_P-loop containing nucleoside triphosphate hydrolases
GTPBP6	8225	genome.wustl.edu	37	X	228170	228170	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000400701	-1	known	p.R118C	1.000	101	0%	57	17.5%	166	25.9%	-	-	-	HMMPfam_MMR_HSR1,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPP2R3B	28227	genome.wustl.edu	37	X	308378	308378	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013239.4	-1	reviewed	p.G187	0.977	60	0%	38	21.1%	25	24%	-	-	-	superfamily_EF-hand
CSF2RA	1438	genome.wustl.edu	37	X	1409307	1409307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006140.4	+1	reviewed	p.S184L	0.001	606	0%	402	23.9%	7	85.7%	probably_damaging(0.993)	tolerated(0.07)	deleterious(0.769)	superfamily_Fibronectin type III
CSF2RA	1438	genome.wustl.edu	37	X	1424366	1424366	+	Missense_Mutation	SNP	G	G	A	rs56960778		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_172247.2	+1	reviewed	p.R325H	0.012	466	0%	292	24%	18	11.1%	possibly_damaging(0.535)	tolerated(0.18)	neutral(0.237)	NULL
IL3RA	3563	genome.wustl.edu	37	X	1464255	1464255	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002183.2	+1	reviewed	p.Q37	0.001	917	0%	550	21.8%	12	16.6%	-	-	-	NULL
SLC25A6	293	genome.wustl.edu	37	X	1505572	1505572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001636.3	-1	reviewed	p.A274T	1.000	423	0.2%	426	22.3%	345	3.1%	possibly_damaging(0.82)	deleterious(0.01)	deleterious(0.716)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
ASMTL	8623	genome.wustl.edu	37	X	1536959	1536959	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004192.3	-1	reviewed	p.Q477*	0.145	271	0%	237	24.5%	66	0%	-	-	-	HMMPfam_Methyltransf_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
P2RY8	286530	genome.wustl.edu	37	X	1584800	1584800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178129.4	-1	reviewed	p.L218I	0.998	41	0%	18	33.3%	0	-	benign(0.018)	tolerated(0.46)	neutral(0.013)	HMMPfam_7tm_1,superfamily_SSF81321
P2RY8	286530	genome.wustl.edu	37	X	1584906	1584906	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178129.4	-1	reviewed	p.T182	0.433	51	0%	46	23.9%	2	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
P2RY8	286530	genome.wustl.edu	37	X	1585419	1585419	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178129.4	-1	reviewed	p.N11	1.000	30	0%	22	31.8%	1	0%	-	-	-	superfamily_SSF81321
AKAP17A	8227	genome.wustl.edu	37	X	1714399	1714399	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005088.2	+1	validated	p.A295	0.566	787	0%	653	23.3%	13	46.1%	-	-	-	NULL
AKAP17A	8227	genome.wustl.edu	37	X	1718176	1718176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005088.2	+1	validated	p.R335C	0.313	244	0%	227	15%	41	34.1%	unknown(0)	deleterious(0)	-	NULL
ASMT	438	genome.wustl.edu	37	X	1755375	1755375	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004043.2	+1	reviewed	p.L278	0.995	605	0.2%	362	20.4%	0	-	-	-	-	HMMPfam_Methyltransf_2,superfamily_SSF53335
DHRSX	207063	genome.wustl.edu	37	X	2161132	2161132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145177.2	-1	validated	p.D246N	1.000	270	0%	97	16.5%	80	37.5%	benign(0.001)	tolerated(0.57)	neutral(0.006)	superfamily_NAD(P)-bd
ARSH	347527	genome.wustl.edu	37	X	2933329	2933329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001011719.1	+1	validated	p.R220H	0.000	551	0%	270	22.2%	0	-	benign(0.011)	tolerated(0.6)	neutral(0.005)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ARSF	416	genome.wustl.edu	37	X	3021810	3021810	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004042.3	+1	reviewed	p.K370	1.000	253	0%	78	23.1%	0	-	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
MXRA5	25878	genome.wustl.edu	37	X	3239465	3239465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015419.3	-1	reviewed	p.E1421K	0.000	147	0%	141	25.5%	4	50%	benign(0.001)	tolerated(0.42)	neutral(0.014)	NULL
MXRA5	25878	genome.wustl.edu	37	X	3241610	3241610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015419.3	-1	reviewed	p.D706Y	0.070	173	0%	198	23.2%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
MXRA5	25878	genome.wustl.edu	37	X	3242312	3242312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015419.3	-1	reviewed	p.R472W	0.025	139	0%	96	26%	3	66.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
LOC100128355	100128355	genome.wustl.edu	37	X	3635254	3635254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343797.1	+1	model	p.A90V	1.000	43	0%	28	32.1%	0	-	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
NLGN4X	57502	genome.wustl.edu	37	X	5821436	5821436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020742.2	-1	reviewed	p.A428V	1.000	90	0%	89	18%	9	44.4%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
STS	412	genome.wustl.edu	37	X	7175395	7175395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000351.4	+1	reviewed	p.V89I	0.028	89	0%	49	10.2%	3	0%	benign(0)	tolerated(1)	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
PNPLA4	8228	genome.wustl.edu	37	X	7880131	7880131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142389.1	-1	reviewed	p.L139I	0.604	239	0%	107	15.9%	80	32.5%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
FAM9A	171482	genome.wustl.edu	37	X	8763242	8763242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174951.3	-1	validated	p.E236D	0.016	218	0%	273	20.1%	0	-	unknown(0)	-	-	NULL
SHROOM2	357	genome.wustl.edu	37	X	9862775	9862775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001649.2	+1	reviewed	p.S276N	0.000	68	0%	42	26.2%	4	0%	possibly_damaging(0.722)	tolerated(0.06)	deleterious(0.585)	NULL
SHROOM2	357	genome.wustl.edu	37	X	9863180	9863180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001649.2	+1	reviewed	p.S411Y	0.679	57	0%	52	23.1%	2	0%	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	NULL
SHROOM2	357	genome.wustl.edu	37	X	9905373	9905373	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001649.2	+1	reviewed	p.Y1263H	0.995	52	0%	38	23.7%	1	100%	possibly_damaging(0.733)	deleterious(0)	deleterious(0.713)	NULL
WWC3	55841	genome.wustl.edu	37	X	10102499	10102499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015691.3	+1	validated	p.L876F	0.381	218	0%	183	15.3%	12	0%	possibly_damaging(0.864)	tolerated(0.07)	deleterious(0.653)	NULL
CLCN4	1183	genome.wustl.edu	37	X	10176084	10176084	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001830.3	+1	reviewed	e7-1	1.000	120	0%	82	20.7%	0	-	-	-	-	-
CLCN4	1183	genome.wustl.edu	37	X	10181783	10181783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001830.3	+1	reviewed	p.E547K	1.000	194	0%	168	25%	0	-	possibly_damaging(0.494)	tolerated(0.38)	neutral(0.182)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
HCCS	3052	genome.wustl.edu	37	X	11135417	11135417	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001122608.2	+1	reviewed	p.D95H	0.998	467	0%	468	13.7%	36	50%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_Cyto_heme_lyase
ARHGAP6	395	genome.wustl.edu	37	X	11174698	11174698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013427.2	-1	reviewed	p.D620N	0.999	364	0%	117	19.7%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
AMELX	265	genome.wustl.edu	37	X	11316788	11316788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182680.1	+1	reviewed	p.P103S	0.998	352	0.3%	273	10.3%	0	-	unknown(0)	tolerated(0.12)	-	HMMPfam_Amelogenin,HMMSmart_SM00818
ARHGAP6	395	genome.wustl.edu	37	X	11682471	11682471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013427.2	-1	reviewed	p.G160R	0.152	61	0%	75	18.7%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
FRMPD4	9758	genome.wustl.edu	37	X	12734466	12734466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014728.3	+1	reviewed	p.L630I	0.004	151	0%	97	13.4%	0	-	benign(0.003)	deleterious(0.03)	neutral(0.364)	NULL
FRMPD4	9758	genome.wustl.edu	37	X	12734679	12734679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014728.3	+1	reviewed	p.L701I	0.334	105	0%	57	19.3%	0	-	probably_damaging(0.981)	deleterious(0.03)	deleterious(0.790)	NULL
TLR8	51311	genome.wustl.edu	37	X	12939357	12939357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138636.4	+1	reviewed	p.S733Y	0.003	352	0%	105	16.2%	4	25%	possibly_damaging(0.86)	deleterious(0.03)	deleterious(0.697)	HMMPfam_LRR_1,superfamily_SSF52058
ATXN3L	92552	genome.wustl.edu	37	X	13337985	13337985	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135995.1	-1	validated	p.L23	0.919	292	0%	88	11.4%	0	-	-	-	-	HMMPfam_Josephin
RAB9A	9367	genome.wustl.edu	37	X	13726992	13726992	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004251.3	+1	provisional	p.E43*	1.000	199	0%	92	13%	41	48.7%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
GLRA2	2742	genome.wustl.edu	37	X	14627285	14627285	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001118885.1	+1	reviewed	p.T296	0.693	185	0%	43	23.3%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
FANCB	2187	genome.wustl.edu	37	X	14861762	14861762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018113.1	-1	reviewed	p.R836I	0.382	346	0%	223	21.1%	2	0%	probably_damaging(0.962)	tolerated(0.16)	neutral(0.465)	NULL
FANCB	2187	genome.wustl.edu	37	X	14861991	14861991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018113.1	-1	reviewed	p.A760T	0.486	306	0%	147	19.7%	0	-	benign(0.002)	tolerated(0.09)	neutral(0.296)	NULL
FANCB	2187	genome.wustl.edu	37	X	14883518	14883518	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018113.1	-1	reviewed	p.K39Q	0.000	176	0%	229	10.9%	1	100%	benign(0.418)	tolerated(0.35)	neutral(0.156)	NULL
MOSPD2	158747	genome.wustl.edu	37	X	14936834	14936834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152581.3	+1	validated	p.P450L	1.000	320	0%	36	19.4%	4	0%	probably_damaging(0.989)	tolerated(0.11)	deleterious(0.711)	NULL
PIR	8544	genome.wustl.edu	37	X	15444029	15444029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001018109.1	-1	reviewed	p.G189W	1.000	489	0%	204	27%	13	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Pirin_C,superfamily_RmlC_like_cupin
BMX	660	genome.wustl.edu	37	X	15540509	15540509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001721.6	+1	reviewed	p.A184V	0.042	327	0%	114	16.7%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
ACE2	59272	genome.wustl.edu	37	X	15605982	15605982	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021804.2	-1	reviewed	e6-1	1.000	310	0%	96	13.5%	0	-	-	-	-	-
ACE2	59272	genome.wustl.edu	37	X	15607506	15607506	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021804.2	-1	reviewed	p.R219	0.001	482	0%	282	29.8%	0	-	-	-	-	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
ACE2	59272	genome.wustl.edu	37	X	15607552	15607552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021804.2	-1	reviewed	p.R204I	1.000	454	0%	272	15.4%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
CA5B	11238	genome.wustl.edu	37	X	15782843	15782843	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000478341	+1	known	p.S42Y	1.000	353	0%	146	8.9%	3	0%	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
ZRSR2	8233	genome.wustl.edu	37	X	15836765	15836765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005089.3	+1	reviewed	p.S276L	1.000	880	0%	990	22.3%	23	26%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMSmart_RRM,superfamily_SSF54928
GRPR	2925	genome.wustl.edu	37	X	16142219	16142219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005314.2	+1	reviewed	p.G48E	0.998	367	0%	73	19.2%	0	-	probably_damaging(0.985)	tolerated(0.11)	deleterious(0.704)	superfamily_Family A G protein-coupled receptor-like
RBBP7	5931	genome.wustl.edu	37	X	16871954	16871954	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002893.3	-1	reviewed	p.L203	0.995	366	0%	167	10.8%	353	32.2%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
NHS	4810	genome.wustl.edu	37	X	17750368	17750368	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198270.2	+1	reviewed	p.S1559	0.986	185	0%	217	23.5%	11	45.4%	-	-	-	NULL
RAI2	10742	genome.wustl.edu	37	X	17819983	17819983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021785.4	-1	reviewed	p.L50M	0.976	131	0%	98	34.7%	26	3.8%	unknown(0)	tolerated(0.11)	-	NULL
SCML2	10389	genome.wustl.edu	37	X	18264905	18264905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006089.2	-1	validated	p.E538D	0.000	113	0%	61	16.4%	0	-	possibly_damaging(0.741)	tolerated(0.17)	neutral(0.331)	NULL
SCML2	10389	genome.wustl.edu	37	X	18278380	18278380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006089.2	-1	validated	p.S327Y	0.881	233	0%	136	11%	0	-	possibly_damaging(0.78)	deleterious(0.01)	deleterious(0.697)	NULL
CDKL5	6792	genome.wustl.edu	37	X	18593569	18593569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037343.1	+1	reviewed	p.R81W	0.994	477	0.2%	116	18.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CDKL5	6792	genome.wustl.edu	37	X	18606144	18606144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037343.1	+1	reviewed	p.P209S	1.000	421	0%	100	27%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CDKL5	6792	genome.wustl.edu	37	X	18613526	18613526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037343.1	+1	reviewed	p.S268N	1.000	620	0%	178	18.5%	0	-	benign(0.055)	tolerated(0.12)	neutral(0.264)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CDKL5	6792	genome.wustl.edu	37	X	18622913	18622913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037343.1	+1	reviewed	p.K623N	1.000	223	0%	103	26.2%	0	-	possibly_damaging(0.923)	tolerated(0.13)	deleterious(0.625)	NULL
CDKL5	6792	genome.wustl.edu	37	X	18627680	18627680	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037343.1	+1	reviewed	p.S714	1.000	220	0%	124	23.4%	0	-	-	-	-	NULL
RS1	6247	genome.wustl.edu	37	X	18665380	18665380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000330.3	-1	reviewed	p.P86L	0.332	263	0.4%	268	22%	0	-	benign(0.025)	tolerated(0.67)	neutral(0.004)	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,superfamily_Gal_bind_like
PPEF1	5475	genome.wustl.edu	37	X	18775775	18775775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006240.2	+1	reviewed	p.L143I	0.960	472	0%	181	16.6%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00156,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases
PPEF1	5475	genome.wustl.edu	37	X	18836165	18836165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006240.2	+1	reviewed	p.T468N	0.000	183	3.3%	62	11.3%	0	-	-	-	-	superfamily_Metallo-dependent phosphatases
ENSG00000250774	0	genome.wustl.edu	37	X	18918859	18918859	+	RNA	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000502927	+1	known	NULL	0.000	349	0%	215	19.1%	0	-	-	-	-	-
PDHA1	5160	genome.wustl.edu	37	X	19372610	19372610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000284.3	+1	reviewed	p.V171A	1.000	567	0%	268	17.2%	18	0%	benign(0.027)	deleterious(0)	neutral(0.446)	HMMPfam_E1_dh,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
MAP3K15	389840	genome.wustl.edu	37	X	19428090	19428090	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001671.3	-1	validated	p.E9D	1.000	487	0%	178	18.5%	0	-	possibly_damaging(0.95)	deleterious(0.05)	deleterious(0.739)	NULL
MAP3K15	389840	genome.wustl.edu	37	X	19444456	19444456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000338883	-1	known	p.R391H	1.000	267	0%	99	28.3%	0	-	possibly_damaging(0.665)	deleterious(0)	deleterious(0.680)	NULL
MAP3K15	389840	genome.wustl.edu	37	X	19475045	19475045	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000338883	-1	known	p.A327	0.074	499	0%	195	21%	0	-	-	-	-	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20028938	20028938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152780.3	-1	validated	p.L728F	1.000	327	0%	152	19.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RPS6KA3	6197	genome.wustl.edu	37	X	20185715	20185715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004586.2	-1	reviewed	p.A532T	0.116	442	0%	140	30.7%	12	0%	benign(0)	tolerated(0.17)	neutral(0.059)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RPS6KA3	6197	genome.wustl.edu	37	X	20213226	20213226	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004586.2	-1	reviewed	p.I121	1.000	456	0%	123	16.3%	6	0%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CNKSR2	22866	genome.wustl.edu	37	X	21609257	21609257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014927.3	+1	reviewed	p.K592T	1.000	320	0%	82	19.5%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
MBTPS2	51360	genome.wustl.edu	37	X	21900747	21900747	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015884.3	+1	reviewed	p.G512*	1.000	429	0%	288	20.1%	2	0%	-	-	-	HMMPfam_Peptidase_M50
PHEX	5251	genome.wustl.edu	37	X	22115085	22115085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000444.4	+1	reviewed	p.H288Y	0.994	410	0%	128	23.4%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	HMMPfam_Peptidase_M13_N,superfamily_SSF55486
PHEX	5251	genome.wustl.edu	37	X	22129664	22129664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000444.4	+1	reviewed	p.L387M	1.000	426	0%	196	17.3%	0	-	probably_damaging(0.989)	tolerated(0.08)	deleterious(0.740)	HMMPfam_Peptidase_M13_N,superfamily_SSF55486
ZNF645	158506	genome.wustl.edu	37	X	22291568	22291568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152577.2	+1	provisional	p.R154C	0.000	143	0%	59	23.7%	0	-	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
PTCHD1	139411	genome.wustl.edu	37	X	23398344	23398344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173495.2	+1	validated	p.L330M	1.000	162	0%	156	23.7%	0	-	probably_damaging(0.972)	deleterious(0.04)	deleterious(0.763)	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
SAT1	6303	genome.wustl.edu	37	X	23802062	23802062	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000379251	+1	known	p.G118	0.002	137	0%	133	21.1%	16	0%	-	-	-	NULL
FAM48B2	170067	genome.wustl.edu	37	X	24329482	24329482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136233.1	-1	provisional	p.L651I	0.000	123	0%	139	27.3%	0	-	-	-	-	NULL
FAM48B1	100130302	genome.wustl.edu	37	X	24381586	24381586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136234.1	+1	inferred	p.R237W	0.071	291	0%	303	26.1%	0	-	-	-	-	NULL
PDK3	5165	genome.wustl.edu	37	X	24544314	24544314	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142386.2	+1	reviewed	e7-1	1.000	544	0%	228	20.2%	0	-	-	-	-	-
POLA1	5422	genome.wustl.edu	37	X	24906160	24906160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016937.3	+1	reviewed	p.R1356Q	1.000	352	0%	95	25.3%	15	0%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_zf-DNA_Pol,superfamily_SSF90234
MAGEB6	158809	genome.wustl.edu	37	X	26212154	26212154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173523.2	+1	reviewed	p.S64F	0.001	288	0%	184	27.2%	0	-	possibly_damaging(0.922)	deleterious(0.05)	deleterious(0.717)	NULL
MAGEB6	158809	genome.wustl.edu	37	X	26212352	26212352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173523.2	+1	reviewed	p.G130D	0.000	206	0%	153	17.6%	0	-	probably_damaging(0.995)	tolerated(0.55)	neutral(0.465)	NULL
MAGEB6	158809	genome.wustl.edu	37	X	26212935	26212935	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173523.2	+1	reviewed	p.I324	0.003	676	0%	397	23.4%	0	-	-	-	-	HMMPfam_MAGE
DCAF8L2	347442	genome.wustl.edu	37	X	27765613	27765613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136533.1	+1	provisional	p.R201C	0.003	52	0%	48	33.3%	0	-	-	-	-	superfamily_WD40 repeat-like
DCAF8L2	347442	genome.wustl.edu	37	X	27766230	27766230	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136533.1	+1	provisional	p.G406	0.008	482	0%	282	12.1%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
DCAF8L2	347442	genome.wustl.edu	37	X	27766783	27766783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136533.1	+1	provisional	p.G591S	0.000	149	0%	79	17.7%	0	-	-	-	-	NULL
DCAF8L1	139425	genome.wustl.edu	37	X	27997858	27997858	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001017930.1	-1	reviewed	p.R532*	0.007	258	0.4%	81	27.2%	0	-	-	-	-	NULL
IL1RAPL1	11141	genome.wustl.edu	37	X	29301121	29301121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014271.3	+1	reviewed	p.R50Q	1.000	566	0%	201	21.9%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
IL1RAPL1	11141	genome.wustl.edu	37	X	29959861	29959861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014271.3	+1	reviewed	p.E384G	1.000	681	0%	248	14.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IL1RAPL1	11141	genome.wustl.edu	37	X	29959905	29959905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014271.3	+1	reviewed	p.D399N	0.998	525	0%	196	20.4%	0	-	benign(0.04)	tolerated(0.38)	neutral(0.020)	NULL
IL1RAPL1	11141	genome.wustl.edu	37	X	29973499	29973499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014271.3	+1	reviewed	p.F551L	1.000	246	0%	84	16.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
MAGEB3	4114	genome.wustl.edu	37	X	30254401	30254401	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002365.4	+1	reviewed	p.Q120	0.000	295	0%	215	18.1%	0	-	-	-	-	HMMPfam_MAGE
MAGEB1	4112	genome.wustl.edu	37	X	30268791	30268791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002363.4	+1	reviewed	p.P61S	0.000	83	0%	54	11.1%	0	-	benign(0.022)	tolerated(0.33)	neutral(0.025)	NULL
NR0B1	190	genome.wustl.edu	37	X	30326485	30326485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000475.4	-1	reviewed	p.E332D	0.030	36	0%	30	26.7%	0	-	benign(0.002)	deleterious(0.05)	neutral(0.345)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
CXorf21	80231	genome.wustl.edu	37	X	30577668	30577668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025159.2	-1	validated	p.D269Y	0.999	239	0.8%	94	26.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GK	2710	genome.wustl.edu	37	X	30686157	30686157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128127.1	+1	reviewed	p.L61I	1.000	410	0.2%	291	20.6%	0	-	possibly_damaging(0.514)	tolerated(0.19)	neutral(0.222)	HMMPfam_FGGY_N,superfamily_SSF53067
GK	2710	genome.wustl.edu	37	X	30686164	30686164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128127.1	+1	reviewed	p.S63Y	1.000	414	0%	295	21.4%	0	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_FGGY_N,superfamily_SSF53067
TAB3	257397	genome.wustl.edu	37	X	30872926	30872926	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152787.3	-1	reviewed	p.Q286*	1.000	515	0%	251	21.1%	0	-	-	-	-	NULL
TAB3	257397	genome.wustl.edu	37	X	30873225	30873225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152787.3	-1	reviewed	p.H186R	1.000	566	0.2%	235	13.6%	2	0%	possibly_damaging(0.922)	tolerated(0.6)	neutral(0.376)	NULL
FTHL17	53940	genome.wustl.edu	37	X	31089581	31089581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031894.2	-1	reviewed	p.A164S	0.000	125	0%	133	21.8%	0	-	benign(0.006)	tolerated(0.87)	neutral(0.001)	superfamily_Ferritin/RR_like
DMD	1756	genome.wustl.edu	37	X	31164408	31164408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004006.2	-1	reviewed	p.G3641C	1.000	181	0%	52	17.3%	2	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
DMD	1756	genome.wustl.edu	37	X	31164500	31164500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004006.2	-1	reviewed	p.T3610M	0.997	141	0%	51	23.5%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
DMD	1756	genome.wustl.edu	37	X	31697498	31697498	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000465285	-1	known	p.N351D	0.999	456	0%	183	21.9%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	31747751	31747751	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004006.2	-1	reviewed	p.R2553*	0.996	646	0%	540	20.2%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FAM47A	158724	genome.wustl.edu	37	X	34148491	34148491	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203408.3	-1	validated	p.Y635	0.001	487	0%	455	21.8%	0	-	-	-	-	NULL
FAM47A	158724	genome.wustl.edu	37	X	34148784	34148784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203408.3	-1	validated	p.R538C	0.002	124	0%	127	10.2%	0	-	possibly_damaging(0.936)	deleterious(0.04)	deleterious(0.730)	NULL
FAM47A	158724	genome.wustl.edu	37	X	34148786	34148786	+	Missense_Mutation	SNP	G	G	T	rs45574734		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203408.3	-1	validated	p.T537N	0.002	123	0%	123	18.7%	0	-	possibly_damaging(0.45)	tolerated(0.08)	neutral(0.448)	NULL
FAM47A	158724	genome.wustl.edu	37	X	34149916	34149916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203408.3	-1	validated	p.E160D	0.785	267	0%	215	21.4%	0	-	probably_damaging(0.988)	deleterious(0.03)	deleterious(0.802)	NULL
FAM47B	170062	genome.wustl.edu	37	X	34961772	34961772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152631.2	+1	validated	p.P275H	0.975	134	0%	155	18.1%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
FAM47B	170062	genome.wustl.edu	37	X	34962204	34962204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152631.2	+1	validated	p.R419Q	0.001	169	0%	149	24.2%	0	-	possibly_damaging(0.94)	tolerated(0.36)	neutral(0.405)	NULL
MAGEB16	139604	genome.wustl.edu	37	X	35820594	35820594	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099921.1	+1	provisional	p.D94V	0.000	222	0%	109	11%	0	-	possibly_damaging(0.95)	tolerated(0.08)	deleterious(0.694)	NULL
MAGEB16	139604	genome.wustl.edu	37	X	35820753	35820753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099921.1	+1	provisional	p.D147G	0.001	209	0%	91	18.7%	0	-	benign(0.297)	tolerated(0.19)	neutral(0.142)	HMMPfam_MAGE
MAGEB16	139604	genome.wustl.edu	37	X	35820972	35820972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099921.1	+1	provisional	p.A220V	0.887	376	0%	182	20.3%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_MAGE
CXorf30	645090	genome.wustl.edu	37	X	36371670	36371670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098843.3	+1	validated	p.R355W	0.000	350	0.3%	123	16.3%	2	0%	benign(0.253)	deleterious(0)	deleterious(0.471)	NULL
CXorf30	645090	genome.wustl.edu	37	X	36397503	36397503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001098843.3	+1	validated	p.S521N	1.000	304	0%	140	10.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM47C	442444	genome.wustl.edu	37	X	37027160	37027160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013736.2	+1	validated	p.P226H	0.030	94	0%	126	20.6%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
RPGR	6103	genome.wustl.edu	37	X	38128998	38128998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000328.2	-1	reviewed	p.D777Y	0.877	482	0%	388	19.3%	4	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
OTC	5009	genome.wustl.edu	37	X	38268216	38268216	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000531.5	+1	reviewed	p.G269*	1.000	283	0%	83	21.7%	0	-	-	-	-	superfamily_Aspartate/ornithine carbamoyltransferase,HMMPfam_OTCace
BCOR	54880	genome.wustl.edu	37	X	39921468	39921468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001123385.1	-1	reviewed	p.P1451L	0.998	226	0%	178	20.8%	16	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
BCOR	54880	genome.wustl.edu	37	X	39930372	39930372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001123385.1	-1	reviewed	p.R1031I	1.000	416	0%	434	26.5%	7	0%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
BCOR	54880	genome.wustl.edu	37	X	39933945	39933945	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001123385.1	-1	reviewed	p.Y218	1.000	149	0%	147	25.9%	7	14.2%	-	-	-	NULL
CXorf38	159013	genome.wustl.edu	37	X	40496359	40496359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144970.2	-1	validated	p.S174F	0.998	227	0%	222	13.5%	27	33.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
USP9X	8239	genome.wustl.edu	37	X	41012294	41012294	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039590.2	+1	reviewed	p.N619	0.999	652	0%	210	21%	7	0%	-	-	-	NULL
USP9X	8239	genome.wustl.edu	37	X	41077839	41077839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039590.2	+1	reviewed	p.P2142S	1.000	636	0%	483	22.2%	62	64.5%	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
USP9X	8239	genome.wustl.edu	37	X	41084093	41084093	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039590.2	+1	reviewed	p.S2284R	1.000	417	0%	299	22.1%	85	16.4%	benign(0.016)	tolerated(0.62)	neutral(0.005)	NULL
DDX3X	1654	genome.wustl.edu	37	X	41203316	41203316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001356.3	+1	reviewed	p.P267S	1.000	225	0%	191	19.9%	64	40.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX3X	1654	genome.wustl.edu	37	X	41204683	41204683	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001356.3	+1	reviewed	p.E399D	0.999	227	0%	281	26.7%	65	33.8%	benign(0)	tolerated(1)	-	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CASK	8573	genome.wustl.edu	37	X	41379834	41379834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003688.3	-1	reviewed	p.R869C	1.000	282	0%	216	19.4%	31	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_kin,HMMSmart_GuKc,superfamily_SSF52540
CASK	8573	genome.wustl.edu	37	X	41437689	41437689	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003688.3	-1	reviewed	p.N469	0.985	407	0%	155	17.4%	17	0%	-	-	-	NULL
CASK	8573	genome.wustl.edu	37	X	41485942	41485942	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003688.3	-1	reviewed	p.A310	0.658	300	0%	252	15.5%	6	83.3%	-	-	-	NULL
GPR34	2857	genome.wustl.edu	37	X	41555100	41555100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001097579.1	+1	validated	p.N72D	1.000	294	0%	147	29.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MAOB	4129	genome.wustl.edu	37	X	43652824	43652824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000898.4	-1	reviewed	p.A257V	1.000	255	0%	98	17.3%	51	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
MAOB	4129	genome.wustl.edu	37	X	43741525	43741525	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000898.4	-1	reviewed	p.V7	1.000	28	0%	46	21.7%	12	0%	-	-	-	superfamily_FAD/NAD(P)-binding domain
EFHC2	80258	genome.wustl.edu	37	X	44037636	44037636	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_025184.3	-1	validated	p.P642H	0.001	263	0%	96	13.5%	4	0%	-	-	-	NULL
EFHC2	80258	genome.wustl.edu	37	X	44202888	44202889	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000420999	-1	known	p.A10fs	0.002:0.000	-	-	-	-	-	-	-	-	-	NULL
KDM6A	7403	genome.wustl.edu	37	X	44937723	44937723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021140.2	+1	reviewed	p.R971C	1.000	397	0%	198	16.2%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MIR221	407006	genome.wustl.edu	37	X	45605617	45605617	+	RNA	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000385135	-1	known	NULL	1.000	149	0%	94	31.9%	0	-	-	-	-	-
ZNF674	641339	genome.wustl.edu	37	X	46388270	46388270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039891.2	-1	validated	p.K30N	0.976	308	0%	124	18.5%	5	0%	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
UBA1	7317	genome.wustl.edu	37	X	47060332	47060332	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003334.3	+1	reviewed	p.R174*	0.984	169	0%	164	20.7%	112	0%	-	-	-	HMMPfam_ThiF,superfamily_MoeB
UBA1	7317	genome.wustl.edu	37	X	47074323	47074323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003334.3	+1	reviewed	p.R1058S	1.000	76	0%	79	24.1%	999	0.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP11	8237	genome.wustl.edu	37	X	47098766	47098766	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004651.3	+1	reviewed	p.R144	0.537	141	0%	120	25%	25	0%	-	-	-	HMMSmart_DUSP,HMMPfam_DUF1055
USP11	8237	genome.wustl.edu	37	X	47099747	47099747	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004651.3	+1	reviewed	p.P236	0.000	221	0%	213	25.4%	23	78.2%	-	-	-	HMMPfam_DUF1055
ARAF	369	genome.wustl.edu	37	X	47426821	47426821	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001654.3	+1	reviewed	p.Q356*	1.000	238	0%	230	26.5%	14	14.2%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
ARAF	369	genome.wustl.edu	37	X	47430282	47430282	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001654.3	+1	reviewed	p.I519	1.000	146	0%	235	23.4%	23	0%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
ARAF	369	genome.wustl.edu	37	X	47430355	47430355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001654.3	+1	reviewed	p.R544C	0.999	91	0%	146	11%	40	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Kinase_like,HMMPfam_Pkinase
CFP	5199	genome.wustl.edu	37	X	47485529	47485529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145252.1	-1	reviewed	p.C391Y	0.945	92	0%	99	14.1%	14	7.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_TSP1,superfamily_TSP1
SPACA5	389852	genome.wustl.edu	37	X	47867812	47867812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_205856.2	+1	validated	p.A62T	0.006	677	0%	509	11.8%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955
ZNF630	57232	genome.wustl.edu	37	X	47919232	47919232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001037735.2	-1	validated	p.R200I	0.505	144	0.7%	59	10.2%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
SSX5	6758	genome.wustl.edu	37	X	48054566	48054566	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021015.3	-1	reviewed	e2-1	0.000	297	0%	229	20.5%	0	-	-	-	-	-
SSX9	280660	genome.wustl.edu	37	X	48159131	48159131	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000376909	-1	known	p.N134	0.000	984	0.1%	338	13.6%	0	-	-	-	-	NULL
FTSJ1	24140	genome.wustl.edu	37	X	48341096	48341096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012280.2	+1	reviewed	p.R291C	0.002	76	0%	78	17.9%	97	0%	benign(0.008)	tolerated(0.08)	neutral(0.300)	NULL
WDR13	64743	genome.wustl.edu	37	X	48457832	48457832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017883.4	+1	reviewed	p.R125H	1.000	73	0%	59	22%	80	81.2%	probably_damaging(0.997)	tolerated(0.26)	deleterious(0.500)	NULL
WDR13	64743	genome.wustl.edu	37	X	48458064	48458064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017883.4	+1	reviewed	p.A161V	0.997	100	0%	96	18.8%	112	0.8%	benign(0.008)	tolerated(0.83)	neutral(0.001)	HMMSmart_SM00320
SUV39H1	6839	genome.wustl.edu	37	X	48557294	48557294	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003173.2	+1	reviewed	p.G7	0.994	136	0%	262	25.6%	5	100%	-	-	-	NULL
SUV39H1	6839	genome.wustl.edu	37	X	48557432	48557432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003173.2	+1	reviewed	p.K53N	0.993	189	0%	333	23.7%	6	0%	benign(0.389)	tolerated(0.45)	neutral(0.137)	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
SUV39H1	6839	genome.wustl.edu	37	X	48558487	48558487	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000337852	+1	known	p.G37*	0.997	12	0%	33	30.3%	7	100%	-	-	-	NULL
SUV39H1	6839	genome.wustl.edu	37	X	48558589	48558589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000453214	+1	known	p.G29R	1.000	41	0%	61	29.5%	6	100%	unknown(0)	-	-	NULL
HDAC6	10013	genome.wustl.edu	37	X	48673823	48673823	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006044.2	+1	reviewed	p.G394	0.001	169	0%	181	26%	15	0%	-	-	-	HMMPfam_Hist_deacetyl,superfamily_SSF52768
HDAC6	10013	genome.wustl.edu	37	X	48673835	48673835	+	Silent	SNP	G	G	A	rs57333741		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006044.2	+1	reviewed	p.S398	0.101	184	0%	179	25.1%	12	58.3%	-	-	-	HMMPfam_Hist_deacetyl,superfamily_SSF52768
HDAC6	10013	genome.wustl.edu	37	X	48681638	48681638	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006044.2	+1	reviewed	p.V943	0.000	61	0%	67	28.4%	11	0%	-	-	-	NULL
ERAS	3266	genome.wustl.edu	37	X	48687842	48687842	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181532.2	+1	provisional	p.R103	0.001	49	0%	51	15.7%	0	-	-	-	-	HMMSmart_RAS,HMMPfam_Ras,superfamily_SSF52540
PQBP1	10084	genome.wustl.edu	37	X	48759863	48759863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000376548	+1	known	p.P216T	0.000	71	0%	97	32%	8	0%	-	-	-	NULL
SLC35A2	7355	genome.wustl.edu	37	X	48762204	48762204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005660.1	-1	provisional	p.A328T	1.000	110	0%	84	29.8%	25	0%	benign(0.097)	tolerated(0.35)	neutral(0.028)	HMMPfam_Nuc_sug_transp,superfamily_Multidrug resistance efflux transporter EmrE
SLC35A2	7355	genome.wustl.edu	37	X	48768816	48768816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000376519	-1	known	p.T33I	0.112	9	0.000	11	0.364	0	-	-	-	-	NULL
OTUD5	55593	genome.wustl.edu	37	X	48814375	48814375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017602.3	-1	reviewed	p.R153H	0.997	10	0%	15	26.7%	12	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
KCND1	3750	genome.wustl.edu	37	X	48823447	48823447	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004979.4	-1	reviewed	p.G396	0.518	258	0%	238	22.7%	6	100%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
GPKOW	27238	genome.wustl.edu	37	X	48972134	48972134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015698.4	-1	validated	p.V386I	1.000	402	0%	215	20.5%	94	0%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	NULL
GPKOW	27238	genome.wustl.edu	37	X	48978819	48978819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015698.4	-1	validated	p.A129T	0.559	121	0%	101	19.8%	37	0%	benign(0.007)	tolerated(1)	-	NULL
PLP2	5355	genome.wustl.edu	37	X	49028440	49028440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002668.2	+1	reviewed	p.E31D	1.000	61	0%	86	26.7%	236	0%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	HMMPfam_MARVEL
SYP	6855	genome.wustl.edu	37	X	49049907	49049907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003179.2	-1	reviewed	p.T146M	1.000	161	0%	190	26.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MARVEL
CACNA1F	778	genome.wustl.edu	37	X	49068760	49068760	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005183.2	-1	reviewed	p.P1328	1.000	146	0%	71	25.4%	3	100%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1F	778	genome.wustl.edu	37	X	49072885	49072885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005183.2	-1	reviewed	p.M1076V	1.000	186	0%	156	14.1%	1	100%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1F	778	genome.wustl.edu	37	X	49079033	49079033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005183.2	-1	reviewed	p.A757T	1.000	313	0%	261	20.3%	1	0%	benign(0.15)	deleterious(0)	neutral(0.458)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1F	778	genome.wustl.edu	37	X	49086730	49086730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005183.2	-1	reviewed	p.E257K	1.000	112	0%	126	23%	0	-	possibly_damaging(0.484)	deleterious(0)	deleterious(0.605)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CCDC22	28952	genome.wustl.edu	37	X	49099433	49099433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014008.3	+1	validated	p.R148H	0.249	126	0%	122	15.6%	34	88.2%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_DUF812
GAGE4	2576	genome.wustl.edu	37	X	49105310	49105310	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001474.1	+1	reviewed	p.C44Y	1.000	145	0%	140	18.6%	51	1.9%	-	-	-	NULL
FOXP3	50943	genome.wustl.edu	37	X	49111949	49111949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014009.3	-1	reviewed	p.L253M	1.000	60	0%	73	17.8%	3	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
FOXP3	50943	genome.wustl.edu	37	X	49114020	49114020	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014009.3	-1	reviewed	p.L106	1.000	213	0%	127	18.9%	3	0%	-	-	-	NULL
PPP1R3F	89801	genome.wustl.edu	37	X	49142862	49142862	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033215.4	+1	reviewed	p.T570	0.000	38	0%	31	35.5%	0	-	-	-	-	NULL
PAGE4	9506	genome.wustl.edu	37	X	49595048	49595048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007003.2	+1	reviewed	p.R6I	0.004	683	0%	520	25.2%	2	0%	unknown(0)	-	-	HMMPfam_GAGE
PAGE4	9506	genome.wustl.edu	37	X	49595652	49595652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007003.2	+1	reviewed	p.P44L	0.000	423	0%	391	20.2%	11	0%	probably_damaging(0.988)	-	-	HMMPfam_GAGE
USP27X	389856	genome.wustl.edu	37	X	49645374	49645374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145073.1	+1	provisional	p.R155H	0.954	318	0.3%	333	23.7%	2	50%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
USP27X	389856	genome.wustl.edu	37	X	49645894	49645894	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145073.1	+1	provisional	p.S328	1.000	310	0.3%	359	20.6%	5	0%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
CLCN5	1184	genome.wustl.edu	37	X	49846418	49846418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127898.1	+1	reviewed	p.P283S	1.000	445	0%	178	22.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
CCNB3	85417	genome.wustl.edu	37	X	50052120	50052120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033031.2	+1	reviewed	p.K317N	0.000	156	0%	38	21.1%	0	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
CCNB3	85417	genome.wustl.edu	37	X	50053647	50053647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033031.2	+1	reviewed	p.H826Q	0.000	120	0%	25	28%	0	-	possibly_damaging(0.767)	tolerated(0.21)	neutral(0.328)	NULL
CCNB3	85417	genome.wustl.edu	37	X	50053683	50053683	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033031.2	+1	reviewed	p.S838	0.000	116	0%	36	27.8%	0	-	-	-	-	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50341445	50341445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020717.3	-1	reviewed	p.L1345I	1.000	127	0%	85	18.8%	0	-	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	HMMPfam_ASD2
SHROOM4	57477	genome.wustl.edu	37	X	50350950	50350950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020717.3	-1	reviewed	p.S1064R	1.000	137	0%	60	31.7%	0	-	benign(0.268)	deleterious(0)	deleterious(0.473)	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50376239	50376239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020717.3	-1	reviewed	p.A945V	0.000	238	0%	120	20.8%	0	-	benign(0.006)	deleterious(0.01)	neutral(0.406)	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50376736	50376736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020717.3	-1	reviewed	p.E779D	0.997	172	0%	98	20.4%	2	0%	possibly_damaging(0.882)	tolerated(0.07)	deleterious(0.663)	HMMPfam_ASD1
NUDT10	170685	genome.wustl.edu	37	X	51075876	51075876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000356450	+1	known	p.A20V	1.000	87	0%	107	22.4%	0	-	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	HMMPfam_NUDIX,superfamily_Nudix
NUDT11	55190	genome.wustl.edu	37	X	51238838	51238838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000375992	-1	known	p.N153K	0.978	285	0%	390	20.8%	0	-	possibly_damaging(0.515)	deleterious(0.02)	deleterious(0.556)	NULL
GSPT2	23708	genome.wustl.edu	37	X	51487366	51487366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018094.4	+1	reviewed	p.G215D	1.000	156	0%	172	19.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU,superfamily_SSF52540
GSPT2	23708	genome.wustl.edu	37	X	51487543	51487543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018094.4	+1	reviewed	p.A274V	1.000	533	0%	560	18.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU,superfamily_SSF52540
GSPT2	23708	genome.wustl.edu	37	X	51487831	51487831	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018094.4	+1	reviewed	p.L370R	1.000	349	0%	353	24.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_GTP_EFTU,superfamily_SSF52540
ENSG00000245461	0	genome.wustl.edu	37	X	51488656	51488656	+	RNA	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000502175	-1	novel	NULL	0.739	158	0%	172	26.7%	0	-	-	-	-	-
MAGED1	9500	genome.wustl.edu	37	X	51639775	51639775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005333.1	+1	reviewed	p.V398M	0.679	97	0%	86	26.7%	100	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
MAGED1	9500	genome.wustl.edu	37	X	51640956	51640956	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001005333.1	+1	reviewed	p.P600	0.875	298	0%	267	24.7%	220	0%	-	-	-	HMMPfam_MAGE
SSX7	280658	genome.wustl.edu	37	X	52674555	52674555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173358.2	-1	reviewed	p.R169C	0.005	740	0.1%	247	15.8%	0	-	benign(0.303)	deleterious(0)	deleterious(0.538)	HMMPfam_SSXRD
GPR173	54328	genome.wustl.edu	37	X	53106118	53106118	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018969.5	+1	reviewed	p.L105	1.000	83	0%	76	26.3%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TSPYL2	64061	genome.wustl.edu	37	X	53112016	53112016	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022117.3	+1	reviewed	p.T112	0.002	47	0%	86	25.6%	2	0%	-	-	-	NULL
TSPYL2	64061	genome.wustl.edu	37	X	53112404	53112404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022117.3	+1	reviewed	p.R242C	1.000	105	0%	119	18.5%	13	0%	benign(0.07)	deleterious(0)	neutral(0.450)	HMMPfam_NAP
TSPYL2	64061	genome.wustl.edu	37	X	53115127	53115127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022117.3	+1	reviewed	p.P518H	0.192	1172	0.1%	750	24.9%	12	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
KDM5C	8242	genome.wustl.edu	37	X	53222681	53222681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004187.3	-1	reviewed	p.I1419V	1.000	153	0%	174	18.4%	55	7.2%	probably_damaging(0.97)	deleterious(0.03)	deleterious(0.777)	NULL
KDM5C	8242	genome.wustl.edu	37	X	53223813	53223813	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004187.3	-1	reviewed	p.S1182	0.005	358	0%	327	21.7%	50	10%	-	-	-	superfamily_FYVE/PHD zinc finger
KDM5C	8242	genome.wustl.edu	37	X	53243994	53243994	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004187.3	-1	reviewed	p.G333	0.988	312	0%	155	20.6%	20	65%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
IQSEC2	23096	genome.wustl.edu	37	X	53264030	53264030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001111125.1	-1	validated	p.P1280S	1.000	28	0%	19	31.6%	3	33.3%	unknown(0)	deleterious(0)	-	NULL
IQSEC2	23096	genome.wustl.edu	37	X	53279765	53279765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001111125.1	-1	validated	p.A665S	1.000	57	0%	43	25.6%	2	50%	benign(0.042)	tolerated(0.67)	neutral(0.005)	NULL
SMC1A	8243	genome.wustl.edu	37	X	53407561	53407561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006306.2	-1	reviewed	p.L1200I	1.000	224	0%	105	27.6%	58	50%	probably_damaging(0.986)	tolerated(0.1)	deleterious(0.721)	HMMPfam_SMC_N,superfamily_SSF52540
HUWE1	10075	genome.wustl.edu	37	X	53573707	53573707	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000427052	-1	known	p.V2606I	0.654	284	0%	164	22%	41	0%	-	-	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53577915	53577915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031407.4	-1	reviewed	p.R3111H	1.000	113	0%	65	36.9%	24	0%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	NULL
HUWE1	10075	genome.wustl.edu	37	X	53591641	53591641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031407.4	-1	reviewed	p.V2308A	1.000	373	0%	175	13.1%	20	0%	benign(0.002)	tolerated(0.15)	neutral(0.241)	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53630408	53630408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_031407.4	-1	reviewed	p.V933I	1.000	241	0%	94	17%	4	0%	probably_damaging(0.995)	tolerated(0.2)	deleterious(0.507)	NULL
PHF8	23133	genome.wustl.edu	37	X	53966899	53966899	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015107.2	-1	reviewed	p.L900	0.887	382	0%	141	21.3%	17	82.3%	-	-	-	NULL
FAM120C	54954	genome.wustl.edu	37	X	54159256	54159256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017848.4	-1	validated	p.N644S	1.000	189	0%	171	27.5%	1	0%	benign(0.307)	tolerated(0.18)	neutral(0.151)	NULL
FAM120C	54954	genome.wustl.edu	37	X	54185906	54185906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017848.4	-1	validated	p.S281R	1.000	296	0%	107	19.6%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
WNK3	65267	genome.wustl.edu	37	X	54263453	54263453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020922.4	-1	reviewed	p.P1516S	0.995	494	0%	193	13.5%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
WNK3	65267	genome.wustl.edu	37	X	54337567	54337567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020922.4	-1	reviewed	p.S232F	1.000	405	0%	193	19.7%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
WNK3	65267	genome.wustl.edu	37	X	54359626	54359626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020922.4	-1	reviewed	p.V161L	1.000	501	0%	212	21.2%	0	-	possibly_damaging(0.889)	deleterious(0)	deleterious(0.794)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
FGD1	2245	genome.wustl.edu	37	X	54475305	54475305	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004463.2	-1	reviewed	p.H790	0.982	59	0%	58	24.1%	38	92.1%	-	-	-	HMMPfam_FYVE,HMMSmart_FYVE
FGD1	2245	genome.wustl.edu	37	X	54494300	54494300	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004463.2	-1	reviewed	p.H419	0.475	129	0%	74	32.4%	20	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
FGD1	2245	genome.wustl.edu	37	X	54496615	54496615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004463.2	-1	reviewed	p.P312H	1.000	59	1.7%	51	11.8%	8	37.5%	unknown(0)	deleterious(0.02)	-	NULL
FGD1	2245	genome.wustl.edu	37	X	54521576	54521576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004463.2	-1	reviewed	p.G97D	1.000	26	0%	28	17.9%	10	0%	unknown(0)	deleterious(0)	-	NULL
GNL3L	54552	genome.wustl.edu	37	X	54578159	54578159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019067.5	+1	reviewed	p.R341H	1.000	106	0%	69	21.7%	4	0%	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	HMMPfam_MMR_HSR1
GNL3L	54552	genome.wustl.edu	37	X	54584945	54584945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019067.5	+1	reviewed	p.R508H	0.000	206	0%	62	17.7%	9	0%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
ITIH6	347365	genome.wustl.edu	37	X	54776442	54776442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198510.2	-1	reviewed	p.K1276N	0.998	79	0%	83	15.7%	0	-	probably_damaging(0.975)	tolerated(0.08)	deleterious(0.717)	NULL
ITIH6	347365	genome.wustl.edu	37	X	54780096	54780096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198510.2	-1	reviewed	p.D1114N	0.986	492	0%	420	17.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ITIH6	347365	genome.wustl.edu	37	X	54783527	54783527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198510.2	-1	reviewed	p.P994S	0.649	315	0%	227	16.3%	0	-	probably_damaging(0.991)	-	-	NULL
ITIH6	347365	genome.wustl.edu	37	X	54783942	54783942	+	Silent	SNP	A	A	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198510.2	-1	reviewed	p.S855	0.000	279	0%	239	24.7%	0	-	-	-	-	NULL
TRO	7216	genome.wustl.edu	37	X	54955317	54955317	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039705.1	+1	reviewed	p.N720	0.000	201	0%	110	18.2%	0	-	-	-	-	NULL
TRO	7216	genome.wustl.edu	37	X	54956158	54956158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039705.1	+1	reviewed	p.G1001S	0.000	115	0%	76	23.7%	3	33.3%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	NULL
TRO	7216	genome.wustl.edu	37	X	54956841	54956841	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039705.1	+1	reviewed	p.G1228	0.000	204	0.5%	139	22.3%	5	0%	-	-	-	NULL
APEX2	27301	genome.wustl.edu	37	X	55028813	55028813	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014481.2	+1	reviewed	p.L124R	1.000	263	0%	252	26.6%	28	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
ALAS2	212	genome.wustl.edu	37	X	55040039	55040039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000032.4	-1	reviewed	p.L494F	1.000	127	0%	79	17.7%	2	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ALAS2	212	genome.wustl.edu	37	X	55041310	55041310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000032.4	-1	reviewed	p.R436Q	0.994	120	0.8%	74	13.5%	0	-	possibly_damaging(0.478)	tolerated(0.16)	neutral(0.217)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ALAS2	212	genome.wustl.edu	37	X	55052395	55052395	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000032.4	-1	reviewed	p.V13	0.424	181	0%	65	21.5%	0	-	-	-	-	HMMPfam_Preseq_ALAS
MAGEH1	28986	genome.wustl.edu	37	X	55478866	55478866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014061.3	+1	reviewed	p.R20H	1.000	24	0%	42	28.6%	3	0%	unknown(0)	deleterious(0)	-	NULL
MAGEH1	28986	genome.wustl.edu	37	X	55479281	55479281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014061.3	+1	reviewed	p.E158D	0.180	227	0%	172	27.3%	10	0%	possibly_damaging(0.77)	tolerated(0.15)	deleterious(0.527)	HMMPfam_MAGE
USP51	158880	genome.wustl.edu	37	X	55513273	55513273	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201286.3	-1	validated	p.L700	1.000	182	0.5%	194	19.6%	2	0%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
USP51	158880	genome.wustl.edu	37	X	55514860	55514860	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_201286.3	-1	validated	p.D171	0.000	50	0%	91	19.8%	0	-	-	-	-	NULL
UBQLN2	29978	genome.wustl.edu	37	X	56591329	56591329	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013444.3	+1	reviewed	p.G341	0.165	103	0%	101	20.8%	14	0%	-	-	-	NULL
SPIN3	169981	genome.wustl.edu	37	X	57021324	57021324	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001010862.2	-1	validated	p.G19	0.000	146	0%	159	28.9%	1	0%	-	-	-	NULL
FAAH2	158584	genome.wustl.edu	37	X	57405176	57405176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_174912.3	+1	reviewed	p.L279M	0.892	406	0%	246	19.5%	18	0%	probably_damaging(0.968)	deleterious(0.05)	deleterious(0.755)	HMMPfam_Amidase,superfamily_Amidase signature (AS) enzymes
ZXDB	158586	genome.wustl.edu	37	X	57620065	57620065	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007157.3	+1	validated	p.R528	0.997	205	0%	317	19.2%	0	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZXDB	158586	genome.wustl.edu	37	X	57620131	57620131	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007157.3	+1	validated	p.P550	0.320	525	0.2%	790	18.1%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZXDB	158586	genome.wustl.edu	37	X	57620268	57620268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007157.3	+1	validated	p.S596I	0.999	508	0%	697	22%	2	100%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
ZXDA	7789	genome.wustl.edu	37	X	57935706	57935706	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007156.4	-1	reviewed	p.F383	0.996	329	0%	472	12.9%	5	0%	-	-	-	superfamily_SSF57667
ZXDA	7789	genome.wustl.edu	37	X	57935805	57935805	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007156.4	-1	reviewed	p.H350	1.000	148	0%	220	12.7%	3	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SPIN4	139886	genome.wustl.edu	37	X	62570169	62570169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012968.2	-1	validated	p.R177H	1.000	240	0%	249	12%	3	0%	benign(0.362)	tolerated(0.4)	neutral(0.131)	NULL
SPIN4	139886	genome.wustl.edu	37	X	62570623	62570623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012968.2	-1	validated	p.R26G	1.000	150	0%	201	22.9%	6	0%	benign(0.017)	deleterious(0)	neutral(0.445)	NULL
FAM123B	139285	genome.wustl.edu	37	X	63412030	63412030	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152424.3	-1	reviewed	p.D379	0.066	574	0.2%	330	25.8%	0	-	-	-	-	HMMPfam_WTX
FAM123B	139285	genome.wustl.edu	37	X	63412464	63412464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152424.3	-1	reviewed	p.P235T	0.000	219	0%	142	23.9%	1	0%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_WTX
FAM123B	139285	genome.wustl.edu	37	X	63412793	63412793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152424.3	-1	reviewed	p.C125Y	0.003	195	0%	97	16.5%	1	100%	benign(0.284)	tolerated(0.1)	neutral(0.373)	HMMPfam_WTX
MTMR8	55613	genome.wustl.edu	37	X	63576215	63576215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017677.3	-1	reviewed	p.A51T	0.977	174	0%	33	24.2%	1	0%	unknown(0)	tolerated(0.43)	-	superfamily_PH domain-like
MSN	4478	genome.wustl.edu	37	X	64950981	64950981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002444.2	+1	reviewed	p.Q160H	1.000	320	0%	90	23.3%	115	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
MSN	4478	genome.wustl.edu	37	X	64951768	64951768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002444.2	+1	reviewed	p.S207N	0.999	446	0.4%	166	16.9%	120	0%	benign(0)	tolerated(0.22)	neutral(0.042)	superfamily_SSF50729
HEPH	9843	genome.wustl.edu	37	X	65390509	65390509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138737.3	+1	reviewed	p.R36W	0.795	182	0%	68	16.2%	2	0%	possibly_damaging(0.862)	deleterious(0.02)	deleterious(0.716)	superfamily_Cupredoxins
HEPH	9843	genome.wustl.edu	37	X	65413465	65413465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138737.3	+1	reviewed	p.H455Y	0.999	88	0%	61	18%	1	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_Cupredoxins
OPHN1	4983	genome.wustl.edu	37	X	67421496	67421496	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002547.2	-1	reviewed	p.D330	1.000	341	0%	120	19.2%	0	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
OPHN1	4983	genome.wustl.edu	37	X	67421498	67421498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002547.2	-1	reviewed	p.D330N	0.992	335	0%	119	26.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
YIPF6	286451	genome.wustl.edu	37	X	67731771	67731771	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173834.2	+1	provisional	p.I46	0.014	549	0%	372	20.2%	9	0%	-	-	-	NULL
STARD8	9754	genome.wustl.edu	37	X	67940187	67940187	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142503.2	+1	reviewed	p.H657	0.756	34	0%	29	31%	3	0%	-	-	-	NULL
FAM155B	27112	genome.wustl.edu	37	X	68725610	68725610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015686.2	+1	validated	p.P162L	0.194	38	0%	75	28%	2	0%	probably_damaging(0.996)	tolerated(0.37)	deleterious(0.481)	NULL
AWAT2	158835	genome.wustl.edu	37	X	69264268	69264268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002254.1	-1	reviewed	p.P44S	0.000	236	0%	85	27.1%	0	-	benign(0)	tolerated(0.79)	neutral(0.001)	HMMPfam_DAGAT
IGBP1	3476	genome.wustl.edu	37	X	69370137	69370137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001551.2	+1	reviewed	p.A279V	0.148	397	0%	210	23.3%	179	0%	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_TAP42
DGAT2L6	347516	genome.wustl.edu	37	X	69397511	69397511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198512.1	+1	provisional	p.F27L	0.000	334	0%	185	13%	0	-	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
DGAT2L6	347516	genome.wustl.edu	37	X	69424365	69424365	+	Silent	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198512.1	+1	provisional	p.V286	1.000	293	0%	103	23.3%	0	-	-	-	-	HMMPfam_DAGAT
AWAT1	158833	genome.wustl.edu	37	X	69457032	69457032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013579.2	+1	reviewed	p.P132T	1.000	132	0%	107	9.3%	0	-	possibly_damaging(0.87)	tolerated(0.06)	deleterious(0.661)	HMMPfam_DAGAT
AWAT1	158833	genome.wustl.edu	37	X	69459689	69459689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013579.2	+1	reviewed	p.R246H	0.000	448	0.2%	210	27.1%	0	-	possibly_damaging(0.812)	tolerated(0.11)	deleterious(0.577)	HMMPfam_DAGAT
KIF4A	24137	genome.wustl.edu	37	X	69573542	69573542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012310.4	+1	reviewed	p.A520V	1.000	187	0%	167	24.6%	14	0%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
KIF4A	24137	genome.wustl.edu	37	X	69607079	69607079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012310.4	+1	reviewed	p.R722W	0.473	257	0.4%	116	19%	18	88.8%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
KIF4A	24137	genome.wustl.edu	37	X	69623781	69623781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012310.4	+1	reviewed	p.A896D	0.986	306	0%	67	25.4%	29	100%	benign(0.174)	tolerated(0.63)	neutral(0.019)	NULL
KIF4A	24137	genome.wustl.edu	37	X	69639612	69639612	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012310.4	+1	reviewed	p.V1158	0.993	221	0%	133	21.1%	24	0%	-	-	-	NULL
DLG3	1741	genome.wustl.edu	37	X	69673642	69673642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021120.3	+1	reviewed	p.S434L	1.000	137	0%	202	25.7%	3	0%	possibly_damaging(0.927)	deleterious(0)	deleterious(0.820)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
TEX11	56159	genome.wustl.edu	37	X	69902670	69902670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003811.1	-1	reviewed	p.S352F	0.638	241	0%	237	26.6%	0	-	possibly_damaging(0.716)	tolerated(0.05)	deleterious(0.605)	HMMPfam_SPO22,superfamily_TPR-like
TEX11	56159	genome.wustl.edu	37	X	69945140	69945140	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003811.1	-1	reviewed	p.G314	0.000	285	0%	166	22.9%	0	-	-	-	-	HMMPfam_SPO22,superfamily_TPR-like
TEX11	56159	genome.wustl.edu	37	X	70099865	70099865	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001003811.1	-1	reviewed	p.E59	0.008	576	0%	203	15.3%	0	-	-	-	-	NULL
SLC7A3	84889	genome.wustl.edu	37	X	70146728	70146728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001048164.2	-1	reviewed	p.L484F	0.101	397	0%	270	22.6%	2	0%	benign(0.041)	tolerated(0.32)	neutral(0.026)	NULL
IL2RG	3561	genome.wustl.edu	37	X	70329221	70329221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000206.2	-1	reviewed	p.R205I	0.001	285	0%	145	17.2%	155	0%	-	-	-	HMMSmart_FN3,superfamily_FN_III-like
MED12	9968	genome.wustl.edu	37	X	70346837	70346837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005120.2	+1	reviewed	p.V902I	1.000	380	0%	183	19.7%	9	0%	benign(0.183)	deleterious(0.04)	neutral(0.366)	NULL
MED12	9968	genome.wustl.edu	37	X	70347846	70347846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005120.2	+1	reviewed	p.P1029S	1.000	297	0%	131	10.7%	19	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
NLGN3	54413	genome.wustl.edu	37	X	70367754	70367754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018977.3	+1	reviewed	p.R52M	1.000	59	0%	79	22.8%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_COesterase,superfamily_SSF53474
NLGN3	54413	genome.wustl.edu	37	X	70368723	70368723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000358741	+1	known	p.R162Q	1.000	222	0%	315	24.8%	0	-	benign(0.025)	tolerated(0.06)	neutral(0.324)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
NLGN3	54413	genome.wustl.edu	37	X	70375210	70375210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018977.3	+1	reviewed	p.L222I	1.000	357	0%	232	16.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_COesterase,superfamily_SSF53474
NLGN3	54413	genome.wustl.edu	37	X	70389537	70389537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018977.3	+1	reviewed	p.A693T	1.000	51	0%	42	19%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GJB1	2705	genome.wustl.edu	37	X	70443570	70443570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000166.5	+1	reviewed	p.G5C	0.953	168	0%	136	21.3%	32	0%	possibly_damaging(0.455)	deleterious(0.02)	deleterious(0.532)	HMMPfam_Connexin
ZMYM3	9203	genome.wustl.edu	37	X	70464151	70464151	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005096.3	-1	reviewed	e19+1	1.000	297	0%	253	20.6%	0	-	-	-	-	-
ZMYM3	9203	genome.wustl.edu	37	X	70464740	70464740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005096.3	-1	reviewed	p.P1004H	1.000	169	0%	137	29.2%	9	77.7%	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	NULL
ZMYM3	9203	genome.wustl.edu	37	X	70471420	70471420	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005096.3	-1	reviewed	p.K233	1.000	140	0%	111	9.9%	9	22.2%	-	-	-	NULL
NONO	4841	genome.wustl.edu	37	X	70514379	70514379	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145408.1	+1	reviewed	e3+1	1.000	266	0%	95	12.6%	2	100%	-	-	-	-
TAF1	6872	genome.wustl.edu	37	X	70597630	70597630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004606.3	+1	reviewed	p.A318T	1.000	336	0%	140	25.7%	2	100%	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	NULL
TAF1	6872	genome.wustl.edu	37	X	70603864	70603864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004606.3	+1	reviewed	p.R687H	1.000	787	0%	241	21.2%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAF1	6872	genome.wustl.edu	37	X	70608626	70608626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004606.3	+1	reviewed	p.R890C	1.000	658	0%	317	22.1%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAF1	6872	genome.wustl.edu	37	X	70618454	70618454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004606.3	+1	reviewed	p.R1238Q	0.999	652	0%	289	20.8%	3	0%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
OGT	8473	genome.wustl.edu	37	X	70775087	70775087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181672.2	+1	reviewed	p.A259V	1.000	183	0.5%	106	11.3%	10	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
OGT	8473	genome.wustl.edu	37	X	70781697	70781697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_181672.2	+1	reviewed	p.Y642H	1.000	238	0%	107	15.9%	9	0%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
ACRC	93953	genome.wustl.edu	37	X	70832293	70832293	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_052957.4	+1	validated	p.W613*	1.000	215	0%	182	20.3%	3	0%	-	-	-	HMMSmart_SM00731,HMMPfam_SprT-like
CXCR3	2833	genome.wustl.edu	37	X	70836420	70836420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001504.1	-1	reviewed	p.S301L	0.521	55	0%	60	26.7%	40	0%	benign(0.004)	tolerated(0.15)	neutral(0.241)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NHSL2	340527	genome.wustl.edu	37	X	71354388	71354388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000510661	+1	known	p.E11D	1.000	64	0%	85	23.5%	0	-	possibly_damaging(0.945)	tolerated(0.32)	neutral(0.414)	NULL
ERCC6L	54821	genome.wustl.edu	37	X	71426404	71426404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017669.2	-1	validated	p.S738Y	0.131	288	0%	131	16.8%	2	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
RPS4X	6191	genome.wustl.edu	37	X	71493732	71493732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001007.4	-1	reviewed	p.D151N	1.000	364	0.3%	205	14.1%	5027	17.3%	benign(0.224)	tolerated(0.1)	neutral(0.308)	HMMPfam_Ribosomal_S4e
HDAC8	55869	genome.wustl.edu	37	X	71571647	71571647	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018486.2	-1	reviewed	p.T349	0.998	696	0%	178	23%	34	91.1%	-	-	-	superfamily_Arginase/deacetylase
PHKA1	5255	genome.wustl.edu	37	X	71802442	71802442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002637.3	-1	reviewed	p.P1102S	1.000	168	0%	63	23.8%	11	0%	benign(0.011)	tolerated(0.23)	neutral(0.042)	HMMPfam_PHK_AB
PHKA1	5255	genome.wustl.edu	37	X	71856149	71856149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002637.3	-1	reviewed	p.T516I	1.000	474	0%	225	20.9%	3	0%	possibly_damaging(0.786)	tolerated(0.18)	neutral(0.350)	HMMPfam_PHK_AB
ZCCHC13	389874	genome.wustl.edu	37	X	73524565	73524565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_203303.2	+1	reviewed	p.R155Q	1.000	45	0%	51	11.8%	0	-	benign(0.005)	-	-	NULL
SLC16A2	6567	genome.wustl.edu	37	X	73744370	73744370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006517.3	+1	reviewed	p.R325I	1.000	369	0%	159	13.8%	0	-	benign(0.257)	tolerated(0.05)	neutral(0.372)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
KIAA2022	340533	genome.wustl.edu	37	X	73959252	73959252	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000424929	-1	known	p.E115*	1.000	386	0%	149	18.8%	0	-	possibly_damaging(0.528)	deleterious(0)	deleterious(0.623)	NULL
KIAA2022	340533	genome.wustl.edu	37	X	73959988	73959988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008537.2	-1	validated	p.E1468D	1.000	557	0%	197	18.8%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
KIAA2022	340533	genome.wustl.edu	37	X	73961740	73961740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001008537.2	-1	validated	p.N884K	0.999	202	0%	90	18.9%	0	-	benign(0.052)	deleterious(0.01)	neutral(0.409)	NULL
ABCB7	22	genome.wustl.edu	37	X	74284923	74284923	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004299.3	-1	reviewed	p.R606*	1.000	176	0%	50	20%	38	0%	-	-	-	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,superfamily_SSF52540
ABCB7	22	genome.wustl.edu	37	X	74293702	74293702	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004299.3	-1	reviewed	e7+1	1.000	396	0%	86	16.3%	0	-	-	-	-	-
UPRT	139596	genome.wustl.edu	37	X	74519606	74519606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145052.3	+1	reviewed	p.R200Q	1.000	338	0%	76	17.1%	10	70%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_PRTase-like
MAGEE2	139599	genome.wustl.edu	37	X	75004125	75004125	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138703.4	-1	validated	p.G254	0.025	148	0%	48	16.7%	0	-	-	-	-	HMMPfam_MAGE
MAGEE2	139599	genome.wustl.edu	37	X	75004486	75004486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138703.4	-1	validated	p.A134V	0.002	71	0%	29	31%	0	-	benign(0.018)	tolerated(0.5)	neutral(0.011)	HMMPfam_MAGE
ATRX	546	genome.wustl.edu	37	X	76814285	76814285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000489.3	-1	reviewed	p.G2120E	1.000	179	0%	125	18.4%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATRX	546	genome.wustl.edu	37	X	76829806	76829806	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000489.3	-1	reviewed	p.R2079*	1.000	297	0.3%	102	24.5%	6	0%	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATRX	546	genome.wustl.edu	37	X	76918944	76918944	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000489.3	-1	reviewed	p.D1349	1.000	745	0%	345	22%	3	0%	-	-	-	NULL
ATRX	546	genome.wustl.edu	37	X	76939402	76939402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000489.3	-1	reviewed	p.P449L	0.000	370	0%	201	22.9%	4	0%	benign(0.035)	tolerated(0.71)	neutral(0.004)	NULL
ATRX	546	genome.wustl.edu	37	X	76939496	76939496	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000489.3	-1	reviewed	p.R418*	0.192	301	0.7%	120	20%	1	0%	-	-	-	NULL
PGAM4	441531	genome.wustl.edu	37	X	77224402	77224402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001029891.2	-1	reviewed	p.A245D	1.000	150	0%	145	17.2%	1	0%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	superfamily_SSF53254
PGAM4	441531	genome.wustl.edu	37	X	77224826	77224826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001029891.2	-1	reviewed	p.A104T	1.000	168	0%	227	15.4%	95	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_PGAM,superfamily_SSF53254
ATP7A	538	genome.wustl.edu	37	X	77243988	77243988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000052.4	+1	reviewed	p.T124N	0.384	267	0%	139	21.6%	0	-	benign(0.177)	tolerated(0.16)	neutral(0.076)	superfamily_HMA heavy metal-associated domain
ATP7A	538	genome.wustl.edu	37	X	77244766	77244766	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000052.4	+1	reviewed	p.Q216	1.000	94	0%	34	14.7%	0	-	-	-	-	HMMPfam_HMA,superfamily_HMA heavy metal-associated domain
ATP7A	538	genome.wustl.edu	37	X	77245142	77245142	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000052.4	+1	reviewed	p.L342	0.995	349	0%	131	22.9%	0	-	-	-	-	HMMPfam_HMA,superfamily_HMA heavy metal-associated domain
ATP7A	538	genome.wustl.edu	37	X	77268457	77268457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000052.4	+1	reviewed	p.L752M	1.000	546	0%	271	12.5%	4	0%	probably_damaging(0.998)	tolerated(0.47)	deleterious(0.485)	NULL
ATP7A	538	genome.wustl.edu	37	X	77286914	77286914	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000052.4	+1	reviewed	p.F1043S	1.000	415	0%	155	17.4%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
ATP7A	538	genome.wustl.edu	37	X	77289293	77289293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000052.4	+1	reviewed	p.S1162Y	1.000	384	0%	123	24.4%	1	100%	possibly_damaging(0.78)	deleterious(0.04)	deleterious(0.640)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ATP7A	538	genome.wustl.edu	37	X	77298097	77298097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000052.4	+1	reviewed	p.K1272N	0.999	557	0%	188	18.6%	2	0%	possibly_damaging(0.929)	deleterious(0.02)	deleterious(0.759)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
PGK1	5230	genome.wustl.edu	37	X	77372821	77372821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000291.3	+1	reviewed	p.P144S	0.756	184	0%	131	28.2%	313	86.9%	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_PGK,superfamily_Phosphoglycerate kinase
PGK1	5230	genome.wustl.edu	37	X	77378737	77378737	+	Missense_Mutation	SNP	G	G	T	rs137852528		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000291.3	+1	reviewed	p.D268Y	1.000	421	0.5%	192	20.8%	535	0%	benign(0.048)	deleterious(0)	neutral(0.448)	HMMPfam_PGK,superfamily_Phosphoglycerate kinase
TAF9B	51616	genome.wustl.edu	37	X	77393509	77393509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015975.4	-1	reviewed	p.A74T	1.000	361	0%	317	19.2%	8	75%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_TFIID-31kDa,superfamily_Histone-fold
ZCCHC5	203430	genome.wustl.edu	37	X	77913642	77913642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152694.2	-1	reviewed	p.Q92H	0.293	98	0%	87	29.9%	0	-	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	NULL
P2RY10	27334	genome.wustl.edu	37	X	78216598	78216598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014499.2	+1	reviewed	p.A194V	0.000	385	0.3%	77	20.8%	7	0%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_7tm_1,superfamily_SSF81321
TBX22	50945	genome.wustl.edu	37	X	79278684	79278684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001109878.1	+1	reviewed	p.L101M	1.000	208	0%	89	23.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_1
TBX22	50945	genome.wustl.edu	37	X	79286169	79286169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001109878.1	+1	reviewed	p.K374N	0.995	499	0%	244	27%	0	-	possibly_damaging(0.946)	tolerated(0.41)	neutral(0.405)	NULL
TBX22	50945	genome.wustl.edu	37	X	79286500	79286500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001109878.1	+1	reviewed	p.L485M	0.997	284	0%	106	14.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BRWD3	254065	genome.wustl.edu	37	X	79938120	79938120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153252.4	-1	reviewed	p.S1414I	1.000	422	0%	106	20.8%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
BRWD3	254065	genome.wustl.edu	37	X	79945584	79945584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153252.4	-1	reviewed	p.S1204P	1.000	437	0%	186	19.4%	5	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
BRWD3	254065	genome.wustl.edu	37	X	79947444	79947444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153252.4	-1	reviewed	p.P1120H	1.000	188	0%	134	24.6%	6	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
BRWD3	254065	genome.wustl.edu	37	X	80047448	80047448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153252.4	-1	reviewed	p.C112Y	1.000	115	0%	125	20%	1	0%	possibly_damaging(0.922)	tolerated(0.05)	deleterious(0.717)	NULL
POU3F4	5456	genome.wustl.edu	37	X	82763924	82763924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000307.3	+1	reviewed	p.A198T	1.000	63	0%	55	23.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA
POU3F4	5456	genome.wustl.edu	37	X	82764063	82764063	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000307.3	+1	reviewed	p.N244T	1.000	64	0%	71	21.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA
POU3F4	5456	genome.wustl.edu	37	X	82764160	82764160	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000307.3	+1	reviewed	p.G276	1.000	68	0%	81	23.5%	0	-	-	-	-	superfamily_Homeodomain_like
HDX	139324	genome.wustl.edu	37	X	83730383	83730383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_144657.4	-1	validated	p.T8N	1.000	191	0%	92	25%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMSmart_SM00389,superfamily_Homeodomain-like
ZNF711	7552	genome.wustl.edu	37	X	84510354	84510354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021998.4	+1	reviewed	p.D57Y	1.000	612	0%	560	24.3%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
ZNF711	7552	genome.wustl.edu	37	X	84519343	84519343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021998.4	+1	reviewed	p.G229C	0.991	406	0%	267	22.8%	1	0%	possibly_damaging(0.604)	tolerated(0.09)	deleterious(0.506)	HMMPfam_Zfx_Zfy_act
ZNF711	7552	genome.wustl.edu	37	X	84526683	84526683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021998.4	+1	reviewed	p.S712I	1.000	291	0%	61	16.4%	3	0%	possibly_damaging(0.924)	deleterious(0)	deleterious(0.818)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
POF1B	79983	genome.wustl.edu	37	X	84537313	84537313	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024921.3	-1	reviewed	p.Q554*	1.000	535	0%	113	23.9%	2	0%	-	-	-	NULL
POF1B	79983	genome.wustl.edu	37	X	84634301	84634301	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024921.3	-1	reviewed	p.R53	1.000	321	0%	119	14.3%	1	0%	-	-	-	NULL
DACH2	117154	genome.wustl.edu	37	X	85906095	85906095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053281.3	+1	reviewed	p.A233T	1.000	298	0%	56	21.4%	0	-	possibly_damaging(0.454)	tolerated(0.25)	neutral(0.185)	NULL
DACH2	117154	genome.wustl.edu	37	X	85950160	85950160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053281.3	+1	reviewed	p.Q303H	1.000	166	0%	50	20%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
DACH2	117154	genome.wustl.edu	37	X	85950179	85950179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_053281.3	+1	reviewed	p.N310D	1.000	172	0%	48	29.2%	0	-	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	NULL
DACH2	117154	genome.wustl.edu	37	X	86068034	86068034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000484479	+1	known	p.I127M	0.998	119	0%	65	12.3%	0	-	probably_damaging(0.976)	tolerated(0.21)	neutral(0.462)	NULL
KLHL4	56062	genome.wustl.edu	37	X	86869013	86869013	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_057162.2	+1	reviewed	p.L186	0.992	238	0%	68	17.6%	0	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
KLHL4	56062	genome.wustl.edu	37	X	86887399	86887399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_057162.2	+1	reviewed	p.V505A	0.068	355	0%	103	19.4%	1	0%	benign(0.327)	tolerated(0.84)	neutral(0.103)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL4	56062	genome.wustl.edu	37	X	86888855	86888855	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_057162.2	+1	reviewed	p.Y552	0.973	237	0%	78	29.5%	0	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL4	56062	genome.wustl.edu	37	X	86919895	86919895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_057162.2	+1	reviewed	p.T686I	0.981	410	0%	156	23.1%	0	-	benign(0.004)	tolerated(0.12)	neutral(0.261)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
TGIF2LX	90316	genome.wustl.edu	37	X	89177195	89177195	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138960.3	+1	reviewed	p.N37	0.001	252	0%	232	26.7%	0	-	-	-	-	NULL
TGIF2LX	90316	genome.wustl.edu	37	X	89177283	89177283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138960.3	+1	reviewed	p.D67N	0.010	288	0%	238	17.6%	0	-	benign(0.002)	tolerated(0.09)	neutral(0.296)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
PABPC5	140886	genome.wustl.edu	37	X	90691437	90691437	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080832.2	+1	reviewed	p.R287S	1.000	98	0%	139	14.4%	1	0%	possibly_damaging(0.457)	tolerated(0.09)	neutral(0.447)	NULL
PCDH11X	27328	genome.wustl.edu	37	X	91090755	91090755	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032968.3	+1	reviewed	p.I84	1.000	737	0.3%	403	21.1%	0	-	-	-	-	HMMPfam_Cadherin_2
PCDH11X	27328	genome.wustl.edu	37	X	91133217	91133217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032968.3	+1	reviewed	p.T660A	1.000	401	0%	230	21.7%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH11X	27328	genome.wustl.edu	37	X	91137925	91137925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032967.2	+1	reviewed	p.T1018I	0.998	635	0%	581	22%	0	-	possibly_damaging(0.707)	deleterious(0.01)	deleterious(0.661)	NULL
NAP1L3	4675	genome.wustl.edu	37	X	92928063	92928063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004538.4	-1	reviewed	p.P81S	0.999	31	0%	47	31.9%	0	-	benign(0.101)	tolerated(0.9)	neutral(0.007)	NULL
NAP1L3	4675	genome.wustl.edu	37	X	92928237	92928237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004538.4	-1	reviewed	p.A23T	0.989	43	0%	70	21.4%	1	0%	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	NULL
PCDH19	57526	genome.wustl.edu	37	X	99662469	99662469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105243.1	-1	reviewed	p.R376H	0.993	78	0%	93	26.9%	0	-	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH19	57526	genome.wustl.edu	37	X	99663085	99663085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001105243.1	-1	reviewed	p.N171D	1.000	72	0%	70	22.9%	0	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
TSPAN6	7105	genome.wustl.edu	37	X	99891680	99891680	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003270.2	-1	reviewed	p.P4	0.218	127	0%	165	13.3%	36	36.1%	-	-	-	NULL
SYTL4	94121	genome.wustl.edu	37	X	99946190	99946190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001129896.2	-1	reviewed	p.P186S	0.041	371	0%	142	18.3%	3	66.6%	benign(0.001)	tolerated(0.56)	neutral(0.006)	HMMPfam_RPH3A_effector
CSTF2	1478	genome.wustl.edu	37	X	100087826	100087826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001325.2	+1	reviewed	p.E379K	0.999	84	0%	50	24%	26	96.1%	possibly_damaging(0.46)	deleterious(0.01)	deleterious(0.556)	NULL
NOX1	27035	genome.wustl.edu	37	X	100105257	100105257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007052.4	-1	reviewed	p.P339H	1.000	280	0%	127	25.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FAD_binding_8,superfamily_Riboflavin synthase domain-like
XKRX	402415	genome.wustl.edu	37	X	100169636	100169636	+	Silent	SNP	T	T	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_212559.2	-1	reviewed	p.G360	0.994	124	0%	40	15%	0	-	-	-	-	NULL
XKRX	402415	genome.wustl.edu	37	X	100183119	100183119	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_212559.2	-1	reviewed	p.R72*	1.000	397	0%	285	23.2%	0	-	-	-	-	NULL
XKRX	402415	genome.wustl.edu	37	X	100183197	100183197	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_212559.2	-1	reviewed	p.F46V	0.998	353	0%	264	25%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
ARL13A	392509	genome.wustl.edu	37	X	100228733	100228733	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012990.3	+1	validated	p.R19*	0.249	278	0%	415	21.9%	0	-	-	-	-	superfamily_SSF52540
TRMT2B	79979	genome.wustl.edu	37	X	100297036	100297036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024917.5	-1	reviewed	p.Q81H	0.999	360	0%	216	18.5%	4	0%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
TAF7L	54457	genome.wustl.edu	37	X	100547799	100547799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024885.3	-1	reviewed	p.E79K	0.004	149	0%	193	22.8%	1	100%	benign(0.147)	tolerated(0.42)	neutral(0.027)	NULL
BTK	695	genome.wustl.edu	37	X	100614295	100614295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000061.2	-1	reviewed	p.L294M	1.000	273	0.4%	109	22.9%	6	0%	unknown(0)	deleterious(0)	-	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
HNRNPH2	3188	genome.wustl.edu	37	X	100667107	100667107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001032393.1	+1	reviewed	p.R44H	1.000	531	0.2%	313	16.9%	65	30.7%	benign(0.004)	tolerated(1)	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
HNRNPH2	3188	genome.wustl.edu	37	X	100667373	100667373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001032393.1	+1	reviewed	p.G133R	1.000	427	0%	244	25%	42	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ARMCX1	51309	genome.wustl.edu	37	X	100808481	100808481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016608.1	+1	reviewed	p.G190C	0.049	68	0%	78	15.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ARMCX6	54470	genome.wustl.edu	37	X	100871304	100871304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009584.1	-1	validated	p.R103W	0.734	127	0.8%	110	18.2%	9	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ARMCX3	51566	genome.wustl.edu	37	X	100880046	100880046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016607.3	+1	reviewed	p.R26I	0.971	250	0%	195	23.1%	14	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ARMCX2	9823	genome.wustl.edu	37	X	100911059	100911059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014782.5	-1	reviewed	p.L506F	1.000	215	0%	240	17.5%	15	0%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX2	9823	genome.wustl.edu	37	X	100912323	100912323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014782.5	-1	reviewed	p.Q84H	0.031	92	0%	69	34.8%	7	57.1%	possibly_damaging(0.791)	deleterious(0)	deleterious(0.741)	NULL
ZMAT1	84460	genome.wustl.edu	37	X	101138558	101138558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001011657.2	-1	reviewed	p.R614M	0.880	372	0%	201	12.4%	2	0%	possibly_damaging(0.509)	deleterious(0.01)	deleterious(0.576)	NULL
ZMAT1	84460	genome.wustl.edu	37	X	101139687	101139687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001011657.2	-1	reviewed	p.A238S	0.001	503	0%	194	17.5%	1	0%	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
ZMAT1	84460	genome.wustl.edu	37	X	101141683	101141683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001011657.2	-1	reviewed	p.V176I	0.009	433	0%	105	18.1%	3	66.6%	benign(0.004)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00451,HMMPfam_zf-C2H2,HMMSmart_SM00355
ZMAT1	84460	genome.wustl.edu	37	X	101153186	101153186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001011657.2	-1	reviewed	p.K79R	0.989	342	0%	158	16.5%	0	-	possibly_damaging(0.948)	tolerated(0.55)	neutral(0.398)	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-U1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NXF2B	728343	genome.wustl.edu	37	X	101615540	101615540	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099686.1	-1	provisional	p.A621	0.989	1179	0%	601	11.5%	0	-	-	-	-	HMMPfam_TAP_C,HMMSmart_TAP_C,superfamily_UBA_like
NXF2B	728343	genome.wustl.edu	37	X	101619978	101619978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099686.1	-1	provisional	p.L450I	0.022	857	0.1%	429	10.3%	0	-	benign(0.01)	tolerated(0.35)	neutral(0.021)	HMMPfam_NTF2,superfamily_SSF54427
GPRASP1	9737	genome.wustl.edu	37	X	101910742	101910742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001099410.1	+1	reviewed	p.S634N	0.007	250	0%	203	13.8%	0	-	benign(0.022)	deleterious(0)	neutral(0.446)	NULL
BHLHB9	80823	genome.wustl.edu	37	X	102005425	102005425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142524.1	+1	validated	p.A501D	1.000	258	0%	221	24%	2	100%	probably_damaging(0.962)	tolerated(0.52)	neutral(0.414)	HMMPfam_DUF634,superfamily_ARM-type_fold
NXF3	56000	genome.wustl.edu	37	X	102335507	102335507	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022052.1	-1	reviewed	p.C308*	0.963	408	0%	226	11.1%	0	-	-	-	-	NULL
TCEAL7	56849	genome.wustl.edu	37	X	102586470	102586470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152278.2	+1	provisional	p.E47K	0.960	156	0%	181	26%	2	0%	benign(0.224)	tolerated(0.31)	neutral(0.049)	HMMPfam_TFA
RAB40A	142684	genome.wustl.edu	37	X	102755472	102755472	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080879.2	-1	reviewed	p.S71	1.000	364	0%	392	14.8%	0	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
PLP1	5354	genome.wustl.edu	37	X	103045491	103045491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000533.3	+1	reviewed	p.V267I	1.000	458	0%	221	10.4%	0	-	possibly_damaging(0.892)	tolerated(0.51)	neutral(0.360)	HMMPfam_Myelin_PLP
H2BFWT	158983	genome.wustl.edu	37	X	103267759	103267759	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001002916.3	-1	reviewed	p.G158	1.000	26	0%	24	20.8%	0	-	-	-	-	HMMSmart_H2B,superfamily_Histone-fold
MCART6	401612	genome.wustl.edu	37	X	103349182	103349182	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012755.3	-1	validated	p.A253	0.992	79	0%	78	21.8%	1	0%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
TEX13A	56157	genome.wustl.edu	37	X	104464816	104464816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000413579	-1	known	p.R89M	0.774	72	0%	55	14.5%	1	100%	possibly_damaging(0.909)	tolerated(0.06)	deleterious(0.684)	NULL
NRK	203447	genome.wustl.edu	37	X	105144610	105144610	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198465.2	+1	validated	e9-1	1.000	680	0%	157	27.4%	0	-	-	-	-	-
NRK	203447	genome.wustl.edu	37	X	105153158	105153158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198465.2	+1	validated	p.E509K	0.000	98	0%	34	20.6%	0	-	possibly_damaging(0.442)	deleterious(0.02)	deleterious(0.527)	NULL
NRK	203447	genome.wustl.edu	37	X	105161581	105161581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198465.2	+1	validated	p.R810Q	0.000	445	0%	111	15.3%	0	-	benign(0.001)	tolerated(0.41)	neutral(0.015)	NULL
CXorf57	55086	genome.wustl.edu	37	X	105855622	105855622	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018015.5	+1	validated	p.Y104	0.995	118	0%	113	19.5%	0	-	-	-	-	NULL
CXorf57	55086	genome.wustl.edu	37	X	105905498	105905498	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018015.5	+1	validated	p.S744	0.525	261	0%	82	22%	0	-	-	-	-	NULL
CXorf57	55086	genome.wustl.edu	37	X	105905513	105905513	+	Silent	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018015.5	+1	validated	p.G749	0.994	235	0%	78	19.2%	0	-	-	-	-	NULL
TBC1D8B	54885	genome.wustl.edu	37	X	106091522	106091522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017752.2	+1	validated	p.R609H	0.993	466	0%	225	12.9%	0	-	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	HMMPfam_TBC,HMMSmart_SM00164
MORC4	79710	genome.wustl.edu	37	X	106185367	106185367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024657.4	-1	reviewed	p.E821K	1.000	569	0%	228	19.3%	31	90.3%	benign(0.277)	deleterious(0)	deleterious(0.474)	NULL
MORC4	79710	genome.wustl.edu	37	X	106229368	106229368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024657.4	-1	reviewed	p.G124D	1.000	286	0%	146	22.6%	7	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
MORC4	79710	genome.wustl.edu	37	X	106229374	106229374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024657.4	-1	reviewed	p.G122D	1.000	281	0%	149	18.1%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
TSC22D3	1831	genome.wustl.edu	37	X	106957755	106957755	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_198057.2	-1	reviewed	p.A199	0.984	112	0%	166	28.9%	49	87.7%	-	-	-	NULL
MID2	11043	genome.wustl.edu	37	X	107084163	107084163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012216.3	+1	reviewed	p.L90M	1.000	188	0%	126	22.2%	1	0%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	superfamily_RING/U-box
MID2	11043	genome.wustl.edu	37	X	107160967	107160967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012216.3	+1	reviewed	p.R478Q	1.000	237	0.8%	75	22.7%	0	-	possibly_damaging(0.85)	tolerated(0.42)	neutral(0.341)	HMMSmart_SM00060,superfamily_Fibronectin type III
MID2	11043	genome.wustl.edu	37	X	107167642	107167642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012216.3	+1	reviewed	p.G502V	1.000	198	0%	103	27.2%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MID2	11043	genome.wustl.edu	37	X	107169460	107169460	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012216.3	+1	reviewed	p.Y578	1.000	121	0%	96	19.8%	2	0%	-	-	-	NULL
VSIG1	340547	genome.wustl.edu	37	X	107320556	107320556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182607.4	+1	reviewed	p.P370H	0.369	256	0%	125	22.4%	0	-	unknown(0)	deleterious(0.05)	-	NULL
COL4A6	1288	genome.wustl.edu	37	X	107408265	107408265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001847.2	-1	reviewed	p.R1272H	0.937	17	5.9%	11	36.4%	0	-	probably_damaging(0.994)	tolerated(0.39)	neutral(0.468)	HMMPfam_Collagen
GUCY2F	2986	genome.wustl.edu	37	X	108641882	108641882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001522.2	-1	reviewed	p.S724I	0.501	221	0%	53	18.9%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ACSL4	2182	genome.wustl.edu	37	X	108887277	108887277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022977.2	-1	reviewed	p.R706Q	1.000	556	0%	623	20.9%	10	50%	possibly_damaging(0.947)	tolerated(0.13)	deleterious(0.643)	superfamily_Acetyl-CoA synthetase-like
ACSL4	2182	genome.wustl.edu	37	X	108921595	108921595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_022977.2	-1	reviewed	p.M276I	1.000	274	0%	221	19.5%	9	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like
RGAG1	57529	genome.wustl.edu	37	X	109695499	109695499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020769.2	+1	validated	p.P552S	0.041	228	0%	202	14.4%	0	-	benign(0.001)	tolerated(0.73)	neutral(0.002)	NULL
CHRDL1	91851	genome.wustl.edu	37	X	110005970	110005970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001143981.1	-1	reviewed	p.L54M	1.000	435	0.2%	110	19.1%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_VWC,HMMSmart_SM00214,superfamily_Fibronectin type I module
PAK3	5063	genome.wustl.edu	37	X	110406191	110406191	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128168.1	+1	reviewed	p.E209*	1.000	496	0%	110	15.5%	0	-	-	-	-	NULL
PAK3	5063	genome.wustl.edu	37	X	110406257	110406257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001128168.1	+1	reviewed	p.P231S	1.000	521	0%	127	20.5%	0	-	possibly_damaging(0.523)	tolerated(0.1)	neutral(0.463)	NULL
CAPN6	827	genome.wustl.edu	37	X	110489922	110489922	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014289.3	-1	reviewed	p.S603	0.077	279	0%	127	24.4%	9	100%	-	-	-	HMMSmart_C2,superfamily_C2_CaLB
CAPN6	827	genome.wustl.edu	37	X	110490641	110490641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014289.3	-1	reviewed	p.Q566H	1.000	360	0%	203	19.7%	5	0%	probably_damaging(0.964)	deleterious(0.04)	deleterious(0.755)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
ALG13	79868	genome.wustl.edu	37	X	110925441	110925441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018466.4	+1	reviewed	p.S55P	0.001	281	0%	334	26%	10	40%	benign(0.181)	tolerated(0.21)	neutral(0.060)	HMMPfam_Glyco_tran_28_C,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
ALG13	79868	genome.wustl.edu	37	X	110964896	110964896	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000394780	+1	known	p.I464	1.000	373	0%	141	13.5%	3	0%	-	-	-	NULL
ALG13	79868	genome.wustl.edu	37	X	110970114	110970114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000394780	+1	known	p.A603T	1.000	277	0%	52	17.3%	5	0%	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	NULL
ZCCHC16	340595	genome.wustl.edu	37	X	111698206	111698206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001004308.2	+1	validated	p.A84S	0.000	257	0%	73	26%	0	-	benign(0)	tolerated(0.84)	neutral(0.001)	NULL
LHFPL1	340596	genome.wustl.edu	37	X	111874661	111874661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178175.3	-1	reviewed	p.C217Y	0.998	269	0%	94	16%	0	-	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
LHFPL1	340596	genome.wustl.edu	37	X	111914390	111914390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178175.3	-1	reviewed	p.P77S	1.000	141	0%	102	23.5%	1	0%	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	HMMPfam_L_HGMIC_fpl
AMOT	154796	genome.wustl.edu	37	X	112022627	112022627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001113490.1	-1	reviewed	p.A919T	0.120	57	0%	38	31.6%	2	100%	unknown(0)	tolerated(0.31)	-	NULL
HTR2C	3358	genome.wustl.edu	37	X	113965995	113965995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000868.2	+1	reviewed	p.S110P	0.930	320	0%	276	21.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_1,superfamily_SSF81321
LRCH2	57631	genome.wustl.edu	37	X	114419017	114419017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020871.3	-1	validated	p.S193Y	1.000	315	0%	294	22.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_LRR_1,superfamily_SSF52058
RBMXL3	139804	genome.wustl.edu	37	X	114424868	114424868	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145346.1	+1	validated	p.D288	0.009	31	0%	53	24.5%	0	-	-	-	-	NULL
RBMXL3	139804	genome.wustl.edu	37	X	114424898	114424898	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145346.1	+1	validated	p.G298	0.995	34	0%	50	12%	0	-	-	-	-	NULL
RBMXL3	139804	genome.wustl.edu	37	X	114425771	114425771	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145346.1	+1	validated	p.G589	0.746	72	0%	87	23%	0	-	-	-	-	NULL
RBMXL3	139804	genome.wustl.edu	37	X	114426273	114426273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145346.1	+1	validated	p.P757S	0.934	65	0%	74	27%	0	-	possibly_damaging(0.863)	deleterious(0)	deleterious(0.778)	NULL
RBMXL3	139804	genome.wustl.edu	37	X	114426988	114426988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145346.1	+1	validated	p.S995N	0.317	58	0%	68	29.4%	0	-	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	NULL
LUZP4	51213	genome.wustl.edu	37	X	114524338	114524338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016383.3	+1	validated	p.R5W	0.000	194	0.5%	84	21.4%	0	-	unknown(0)	-	-	NULL
PLS3	5358	genome.wustl.edu	37	X	114869321	114869321	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136025.3	+1	reviewed	p.I237	1.000	697	0%	316	19%	98	0%	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
PLS3	5358	genome.wustl.edu	37	X	114871167	114871167	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001136025.3	+1	reviewed	p.R256	0.991	206	0%	94	20.2%	67	62.6%	-	-	-	superfamily_Calponin-homology domain CH-domain
LOC642357	642357	genome.wustl.edu	37	X	114937331	114937331	+	RNA	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XR_016681.3	+1	model	NULL	0.995	133	0%	66	22.7%	0	-	-	-	-	-
LOC653155	653155	genome.wustl.edu	37	X	115882620	115882620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_926254.3	-1	model	p.D72Y	1.000	198	0%	43	16.3%	9	0%	-	-	-	NULL
WDR44	54521	genome.wustl.edu	37	X	117526732	117526732	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000371848	+1	known	p.R8W	0.948	134	0%	56	23.2%	3	0%	-	-	-	NULL
WDR44	54521	genome.wustl.edu	37	X	117575510	117575510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019045.4	+1	reviewed	p.F718L	1.000	257	0%	99	23.2%	7	0%	possibly_damaging(0.896)	tolerated(0.14)	deleterious(0.603)	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR44	54521	genome.wustl.edu	37	X	117576289	117576289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019045.4	+1	reviewed	p.P750H	1.000	452	0%	157	14%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR44	54521	genome.wustl.edu	37	X	117577650	117577650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_019045.4	+1	reviewed	p.A838S	1.000	448	0%	150	10.7%	10	20%	possibly_damaging(0.929)	deleterious(0.03)	deleterious(0.740)	superfamily_WD40 repeat-like
IL13RA1	3597	genome.wustl.edu	37	X	117900825	117900825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001560.2	+1	reviewed	p.V299F	0.000	175	0%	163	17.8%	29	0%	possibly_damaging(0.796)	deleterious(0.03)	deleterious(0.663)	superfamily_Fibronectin type III
ZCCHC12	170261	genome.wustl.edu	37	X	117959857	117959857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173798.2	+1	provisional	p.R217M	0.990	66	0%	61	16.4%	14	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
ZCCHC12	170261	genome.wustl.edu	37	X	117960245	117960245	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173798.2	+1	provisional	p.R346	0.024	266	0%	162	22.2%	9	11.1%	-	-	-	NULL
LONRF3	79836	genome.wustl.edu	37	X	118112308	118112308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031855.1	+1	reviewed	p.A273V	1.000	435	0%	527	24.5%	0	-	benign(0.418)	tolerated(0.24)	neutral(0.173)	HMMSmart_SM00028,superfamily_TPR-like
LONRF3	79836	genome.wustl.edu	37	X	118116815	118116815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001031855.1	+1	reviewed	p.T323I	0.995	470	0%	289	23.9%	0	-	possibly_damaging(0.62)	deleterious(0.03)	deleterious(0.581)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
LONRF3	79836	genome.wustl.edu	37	X	118147053	118147053	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000439603	+1	known	p.*387R	0.002	183	0%	87	17.2%	3	100%	-	-	-	HMMPfam_LON,HMMSmart_SM00464
LONRF3	79836	genome.wustl.edu	37	X	118148283	118148283	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000439603	+1	known	p.L462F	1.000	516	0%	233	18.9%	2	0%	-	-	-	HMMPfam_LON,HMMSmart_SM00464
LOC727838	727838	genome.wustl.edu	37	X	118208978	118208978	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343842.1	+1	model	p.G273	0.000	1361	0%	1484	14.1%	0	-	-	-	-	NULL
ENSG00000248857	0	genome.wustl.edu	37	X	118221200	118221200	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000440399	-1	known	p.T738A	0.000	158	0%	92	22.8%	0	-	-	-	-	NULL
ENSG00000248857	0	genome.wustl.edu	37	X	118221788	118221788	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000440399	-1	known	p.V542I	0.000	177	0%	73	19.2%	0	-	-	-	-	NULL
SLC25A43	203427	genome.wustl.edu	37	X	118586920	118586920	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_145305.2	+1	reviewed	p.S306	1.000	362	0%	197	24.9%	12	83.3%	-	-	-	NULL
SEPT6	23157	genome.wustl.edu	37	X	118786967	118786967	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_015129.5	-1	reviewed	p.F126	0.985	430	0%	181	26.5%	42	0%	-	-	-	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
RPL39	6170	genome.wustl.edu	37	X	118923906	118923906	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000422326	-1	known	p.P72T	0.729	425	0%	327	18%	1162	49.4%	-	-	-	HMMPfam_Ribosomal_L39,superfamily_Ribosomal protein L39e
UPF3B	65109	genome.wustl.edu	37	X	118974640	118974640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080632.1	-1	reviewed	p.R272M	1.000	352	0%	202	13.9%	0	-	possibly_damaging(0.894)	tolerated(0.05)	deleterious(0.698)	NULL
UPF3B	65109	genome.wustl.edu	37	X	118977174	118977174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_080632.1	-1	reviewed	p.A187V	1.000	1286	0%	706	19.3%	8	0%	possibly_damaging(0.9)	tolerated(0.5)	neutral(0.366)	HMMPfam_Smg4_UPF3
RHOXF2	84528	genome.wustl.edu	37	X	119293186	119293186	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032498.1	+1	provisional	p.G115	0.000	128	0%	126	15.1%	0	-	-	-	-	NULL
ZBTB33	10009	genome.wustl.edu	37	X	119387312	119387312	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006777.3	+1	reviewed	p.Y14*	1.000	187	0%	244	16.4%	1	100%	-	-	-	superfamily_POZ domain
ZBTB33	10009	genome.wustl.edu	37	X	119388839	119388839	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006777.3	+1	reviewed	p.P523	0.761	163	0%	170	23.5%	9	0%	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ATP1B4	23439	genome.wustl.edu	37	X	119512555	119512555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001142447.2	+1	reviewed	p.R280Q	1.000	332	0%	89	19.1%	0	-	possibly_damaging(0.666)	tolerated(0.68)	neutral(0.238)	HMMPfam_Na_K-ATPase
CT47B1	643311	genome.wustl.edu	37	X	120008973	120008973	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001145718.1	-1	validated	p.G184	0.000	135	0%	143	26.6%	0	-	-	-	-	NULL
GLUD2	2747	genome.wustl.edu	37	X	120181874	120181874	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012084.3	+1	reviewed	p.C112	1.000	89	0%	102	19.6%	28	3.5%	-	-	-	HMMPfam_ELFV_dehydrog_N,superfamily_SSF53223
GRIA3	2892	genome.wustl.edu	37	X	122551432	122551432	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000828.4	+1	reviewed	p.S560Y	1.000	739	0%	221	18.1%	0	-	-	-	-	NULL
GRIA3	2892	genome.wustl.edu	37	X	122616686	122616686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000264357	+1	known	p.G826S	1.000	413	0%	175	20%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Lig_chan
THOC2	57187	genome.wustl.edu	37	X	122754801	122754801	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001081550.1	-1	validated	p.K1411T	1.000	396	0%	136	27.2%	28	75%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
THOC2	57187	genome.wustl.edu	37	X	122757100	122757100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001081550.1	-1	validated	p.M1180V	1.000	416	0%	133	22.6%	23	0%	benign(0.007)	deleterious(0.02)	neutral(0.383)	NULL
THOC2	57187	genome.wustl.edu	37	X	122772816	122772816	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001081550.1	-1	validated	p.Y603	1.000	478	0.2%	193	18.1%	11	0%	-	-	-	NULL
XIAP	331	genome.wustl.edu	37	X	123034364	123034364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001167.2	+1	reviewed	p.P374H	0.989	279	0%	137	21.9%	9	100%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	superfamily_SSF57924
STAG2	10735	genome.wustl.edu	37	X	123227989	123227989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042749.1	+1	validated	p.D1234N	1.000	516	0%	185	15.7%	55	1.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SH2D1A	4068	genome.wustl.edu	37	X	123499649	123499649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002351.4	+1	reviewed	p.T59I	1.000	756	0%	336	22%	6	0%	possibly_damaging(0.912)	deleterious(0.04)	deleterious(0.712)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
ODZ1	10178	genome.wustl.edu	37	X	123514498	123514498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014253.3	-1	reviewed	p.R2689Q	1.000	470	0%	150	24%	0	-	benign(0.288)	tolerated(0.24)	neutral(0.126)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123654547	123654547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014253.3	-1	reviewed	p.R1041W	0.108	291	0%	84	17.9%	0	-	benign(0.015)	deleterious(0)	neutral(0.445)	NULL
ODZ1	10178	genome.wustl.edu	37	X	124097421	124097421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014253.3	-1	reviewed	p.S61I	0.998	680	0%	547	19.4%	0	-	benign(0.01)	tolerated(0.33)	neutral(0.025)	HMMPfam_Ten_N
DCAF12L2	340578	genome.wustl.edu	37	X	125299013	125299013	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013628.2	-1	reviewed	p.L299	0.991	33	0%	75	24%	0	-	-	-	-	superfamily_WD40_like
ACTRT1	139741	genome.wustl.edu	37	X	127186018	127186018	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138289.3	-1	reviewed	p.F56	0.002	196	0.5%	50	22%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
SMARCA1	6594	genome.wustl.edu	37	X	128602775	128602775	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003069.3	-1	reviewed	p.S891	0.625	368	0%	151	20.5%	58	0%	-	-	-	HMMSmart_SM00717,superfamily_Homeodomain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases
OCRL	4952	genome.wustl.edu	37	X	128709144	128709144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000276.3	+1	reviewed	p.R544W	1.000	624	0%	317	19.9%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_DNase I-like
OCRL	4952	genome.wustl.edu	37	X	128724122	128724122	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000276.3	+1	reviewed	e24-1	1.000	522	0%	191	17.8%	0	-	-	-	-	-
XPNPEP2	7512	genome.wustl.edu	37	X	128880223	128880223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003399.5	+1	reviewed	p.V104M	1.000	92	0%	83	26.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Creatinase_N,superfamily_SSF53092
XPNPEP2	7512	genome.wustl.edu	37	X	128896671	128896671	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003399.5	+1	reviewed	p.E555D	1.000	291	0%	140	22.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core
XPNPEP2	7512	genome.wustl.edu	37	X	128902332	128902332	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003399.5	+1	reviewed	p.R632	0.043	85	0%	39	15.4%	0	-	-	-	-	NULL
UTP14A	10813	genome.wustl.edu	37	X	129053155	129053155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006649.3	+1	reviewed	p.R181I	1.000	326	0%	202	23.3%	15	0%	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	HMMPfam_Utp14
UTP14A	10813	genome.wustl.edu	37	X	129063352	129063352	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006649.3	+1	reviewed	p.F695S	1.000	414	0%	433	23.1%	52	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Utp14
BCORL1	63035	genome.wustl.edu	37	X	129148182	129148182	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021946.3	+1	reviewed	p.L478	0.929	81	0%	46	28.3%	0	-	-	-	-	NULL
BCORL1	63035	genome.wustl.edu	37	X	129150142	129150142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021946.3	+1	reviewed	p.L1132I	0.002	22	0%	21	23.8%	3	0%	benign(0.026)	tolerated(0.13)	neutral(0.254)	NULL
BCORL1	63035	genome.wustl.edu	37	X	129154987	129154987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021946.3	+1	reviewed	p.E1157K	1.000	127	0%	94	11.7%	3	0%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
BCORL1	63035	genome.wustl.edu	37	X	129159112	129159112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021946.3	+1	reviewed	p.S1279I	1.000	108	0%	92	20.7%	0	-	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	NULL
BCORL1	63035	genome.wustl.edu	37	X	129162819	129162819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021946.3	+1	reviewed	p.V1430I	0.164	145	0%	108	21.3%	7	0%	benign(0.001)	tolerated(0.13)	neutral(0.253)	superfamily_Ankyrin repeat
BCORL1	63035	genome.wustl.edu	37	X	129173212	129173212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021946.3	+1	reviewed	p.A1525S	0.988	73	0%	56	26.8%	6	0%	possibly_damaging(0.947)	deleterious(0.03)	deleterious(0.755)	superfamily_Ankyrin repeat
ELF4	2000	genome.wustl.edu	37	X	129201262	129201262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127197.1	-1	reviewed	p.A476S	0.996	66	0%	65	20%	9	77.7%	benign(0.028)	tolerated(0.71)	neutral(0.003)	NULL
ELF4	2000	genome.wustl.edu	37	X	129208638	129208638	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001127197.1	-1	reviewed	p.D55	0.218	260	0.8%	160	26.9%	5	20%	-	-	-	NULL
RAB33A	9363	genome.wustl.edu	37	X	129318525	129318525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004794.2	+1	reviewed	p.M175I	1.000	177	0%	105	23.8%	1	0%	benign(0.022)	tolerated(0.92)	neutral(0.001)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
ZNF280C	55609	genome.wustl.edu	37	X	129361712	129361712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017666.4	-1	validated	p.L398I	1.000	632	0%	162	17.3%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ZNF280C	55609	genome.wustl.edu	37	X	129370484	129370484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017666.4	-1	validated	p.G208D	0.000	543	0%	208	24.5%	2	0%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
GPR119	139760	genome.wustl.edu	37	X	129518824	129518824	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_178471.2	-1	reviewed	p.R200*	0.831	166	0%	64	28.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
RBMX2	51634	genome.wustl.edu	37	X	129546568	129546568	+	Nonsense_Mutation	SNP	G	G	T	rs6654608		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016024.2	+1	validated	p.E239*	0.016	241	0.4%	135	20.7%	37	0%	-	-	-	NULL
ENOX2	10495	genome.wustl.edu	37	X	129771326	129771326	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182314.1	-1	reviewed	p.L425	0.311	673	0.1%	417	26.4%	5	60%	-	-	-	NULL
IGSF1	3547	genome.wustl.edu	37	X	130407783	130407783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001555.4	-1	reviewed	p.P1333L	0.024	380	0%	288	21.2%	3	0%	benign(0.079)	tolerated(0.08)	neutral(0.305)	NULL
IGSF1	3547	genome.wustl.edu	37	X	130412502	130412502	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001555.4	-1	reviewed	p.Y658	1.000	77	0%	94	23.4%	0	-	-	-	-	superfamily_Immunoglobulin
IGSF1	3547	genome.wustl.edu	37	X	130416510	130416510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001555.4	-1	reviewed	p.S385N	0.317	217	0%	156	21.8%	0	-	benign(0.028)	tolerated(0.47)	neutral(0.012)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
IGSF1	3547	genome.wustl.edu	37	X	130419945	130419945	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001555.4	-1	reviewed	p.R59*	0.996	207	0.5%	147	20.4%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FRMD7	90167	genome.wustl.edu	37	X	131231311	131231311	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194277.2	-1	reviewed	p.L89	0.995	239	0%	80	13.8%	0	-	-	-	-	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
FRMD7	90167	genome.wustl.edu	37	X	131234650	131234650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_194277.2	-1	reviewed	p.S51Y	1.000	410	0%	104	15.4%	0	-	possibly_damaging(0.68)	deleterious(0.04)	deleterious(0.591)	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
RAP2C	57826	genome.wustl.edu	37	X	131348311	131348311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021183.3	-1	provisional	p.S146L	1.000	291	0%	345	12.8%	15	60%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
HS6ST2	90161	genome.wustl.edu	37	X	131762592	131762592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077188.1	-1	reviewed	p.D533Y	1.000	377	0%	95	21.1%	9	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_HS6ST
HS6ST2	90161	genome.wustl.edu	37	X	131803196	131803196	+	Missense_Mutation	SNP	C	C	T	rs187567949	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001077188.1	-1	reviewed	p.A338T	0.964	408	0%	123	10.6%	0	-	benign(0.016)	tolerated(0.06)	neutral(0.323)	HMMPfam_HS6ST
TFDP3	51270	genome.wustl.edu	37	X	132351308	132351308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016521.2	-1	reviewed	p.P327L	1.000	233	0%	228	20.6%	0	-	probably_damaging(0.995)	tolerated(0.17)	deleterious(0.516)	HMMPfam_DP
TFDP3	51270	genome.wustl.edu	37	X	132352096	132352096	+	Silent	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016521.2	-1	reviewed	p.R64	0.964	467	0%	465	22.8%	0	-	-	-	-	NULL
GPC4	2239	genome.wustl.edu	37	X	132458477	132458477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001448.2	-1	reviewed	p.S136Y	0.997	127	0%	35	17.1%	11	0%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_Glypican
GPC4	2239	genome.wustl.edu	37	X	132458553	132458553	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001448.2	-1	reviewed	p.E111*	1.000	57	0%	20	30%	2	0%	-	-	-	HMMPfam_Glypican
GPC3	2719	genome.wustl.edu	37	X	132670183	132670183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004484.3	-1	reviewed	p.S571L	0.000	403	0%	109	22%	0	-	benign(0.055)	tolerated(0.37)	neutral(0.022)	HMMPfam_Glypican
PHF6	84295	genome.wustl.edu	37	X	133551318	133551318	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001015877.1	+1	reviewed	p.S318	1.000	470	0%	120	19.2%	6	100%	-	-	-	HMMSmart_SM00249
PLAC1	10761	genome.wustl.edu	37	X	133700567	133700567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_021796.3	-1	provisional	p.C49Y	0.004	292	0%	107	17.8%	0	-	benign(0)	tolerated(1)	-	NULL
FAM122C	159091	genome.wustl.edu	37	X	133988148	133988148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000370784	+1	known	p.T157M	0.244	614	0.2%	265	20.4%	3	0%	unknown(0)	-	-	NULL
ZNF75D	7626	genome.wustl.edu	37	X	134426231	134426231	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007131.3	-1	reviewed	p.E194*	0.020	402	0%	270	22.2%	2	0%	-	-	-	NULL
ZNF75D	7626	genome.wustl.edu	37	X	134427985	134427985	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_007131.3	-1	reviewed	p.E28*	0.000	99	0%	71	23.9%	3	0%	-	-	-	NULL
ZNF449	203523	genome.wustl.edu	37	X	134494753	134494753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152695.5	+1	reviewed	p.C437R	0.977	184	0.5%	97	19.6%	4	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DDX26B	203522	genome.wustl.edu	37	X	134680349	134680349	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182540.4	+1	validated	p.I128	1.000	253	0%	131	19.8%	1	0%	-	-	-	superfamily_vWA-like
DDX26B	203522	genome.wustl.edu	37	X	134681172	134681172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182540.4	+1	validated	p.P242S	1.000	326	0%	122	16.4%	2	0%	possibly_damaging(0.767)	deleterious(0.02)	deleterious(0.667)	NULL
DDX26B	203522	genome.wustl.edu	37	X	134683578	134683578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_182540.4	+1	validated	p.D252Y	0.998	290	0.3%	112	25.9%	2	0%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
LOC644717	644717	genome.wustl.edu	37	X	134812043	134812043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	XM_002343850.1	-1	model	p.P132T	0.000	306	1%	127	22%	0	-	-	-	-	NULL
SAGE1	55511	genome.wustl.edu	37	X	134994956	134994956	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018666.2	+1	reviewed	e19-1	0.986	251	0.4%	97	22.7%	0	-	-	-	-	-
SLC9A6	10479	genome.wustl.edu	37	X	135095153	135095153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042537.1	+1	reviewed	p.G363C	0.993	380	0%	177	21.5%	4	100%	probably_damaging(0.979)	tolerated(0.2)	deleterious(0.471)	HMMPfam_Na_H_Exchanger
SLC9A6	10479	genome.wustl.edu	37	X	135095159	135095159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001042537.1	+1	reviewed	p.F365L	1.000	373	0%	183	24.6%	3	0%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_Na_H_Exchanger
FHL1	2273	genome.wustl.edu	37	X	135290086	135290086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001449.4	+1	reviewed	p.T156I	1.000	176	0%	85	21.2%	15	6.6%	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
MAP7D3	79649	genome.wustl.edu	37	X	135310845	135310845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024597.3	-1	reviewed	p.R608H	0.012	441	0%	213	23%	7	85.7%	possibly_damaging(0.484)	tolerated(0.62)	neutral(0.165)	HMMPfam_MAP7
MAP7D3	79649	genome.wustl.edu	37	X	135313780	135313780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024597.3	-1	reviewed	p.V446M	0.000	253	0%	142	22.5%	5	0%	benign(0.358)	tolerated(0.11)	neutral(0.385)	NULL
MAP7D3	79649	genome.wustl.edu	37	X	135326844	135326844	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024597.3	-1	reviewed	p.Q122*	0.090	1038	0%	1028	19.6%	1	0%	-	-	-	NULL
MAP7D3	79649	genome.wustl.edu	37	X	135328444	135328444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024597.3	-1	reviewed	p.V43I	0.000	501	0%	515	21.9%	7	0%	benign(0.046)	tolerated(0.89)	neutral(0.003)	NULL
GPR112	139378	genome.wustl.edu	37	X	135426787	135426787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153834.3	+1	reviewed	p.D308N	0.000	409	0%	131	10.7%	0	-	benign(0.005)	tolerated(0.24)	neutral(0.037)	NULL
GPR112	139378	genome.wustl.edu	37	X	135427224	135427224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153834.3	+1	reviewed	p.K453N	0.008	127	0.8%	52	26.9%	0	-	benign(0.017)	deleterious(0)	neutral(0.445)	NULL
GPR112	139378	genome.wustl.edu	37	X	135429114	135429114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153834.3	+1	reviewed	p.D1083E	0.006	234	0%	33	15.2%	0	-	possibly_damaging(0.615)	deleterious(0)	deleterious(0.658)	NULL
GPR112	139378	genome.wustl.edu	37	X	135455169	135455169	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153834.3	+1	reviewed	p.T2574	0.000	287	0%	83	19.3%	0	-	-	-	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135498631	135498631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_153834.3	+1	reviewed	p.P3075L	0.124	311	0%	155	21.9%	0	-	benign(0.079)	-	-	NULL
BRS3	680	genome.wustl.edu	37	X	135574407	135574407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001727.1	+1	validated	p.A358D	0.000	192	0%	161	26.1%	0	-	benign(0.017)	tolerated(0.27)	neutral(0.034)	NULL
VGLL1	51442	genome.wustl.edu	37	X	135631084	135631084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016267.3	+1	reviewed	p.S184Y	0.008	70	0%	31	29%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135767874	135767874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004840.2	-1	reviewed	p.F452L	0.997	479	0%	237	23.2%	2	0%	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARHGEF6	9459	genome.wustl.edu	37	X	135827433	135827433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004840.2	-1	reviewed	p.Q136H	0.362	439	0%	259	18.1%	5	0%	benign(0.009)	deleterious(0.02)	neutral(0.384)	NULL
RBMX	27316	genome.wustl.edu	37	X	135957424	135957424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002139.3	-1	reviewed	p.G259R	1.000	678	0%	304	15.8%	214	89.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RBMX	27316	genome.wustl.edu	37	X	135961237	135961237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002139.3	-1	reviewed	p.A52D	1.000	427	0%	332	20.8%	91	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
ZIC3	7547	genome.wustl.edu	37	X	136649636	136649636	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003413.3	+1	reviewed	p.S262	1.000	23	0%	47	14.9%	0	-	-	-	-	HMMSmart_ZnF_C2H2
ZIC3	7547	genome.wustl.edu	37	X	136649639	136649639	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003413.3	+1	reviewed	p.R263	1.000	26	0%	51	29.4%	0	-	-	-	-	HMMSmart_ZnF_C2H2
ZIC3	7547	genome.wustl.edu	37	X	136652125	136652125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003413.3	+1	reviewed	p.A434S	1.000	244	0%	305	12.5%	0	-	benign(0)	tolerated(0.95)	-	NULL
FGF13	2258	genome.wustl.edu	37	X	137821414	137821414	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_033642.2	-1	reviewed	p.K6	1.000	461	0%	106	24.5%	0	-	-	-	-	NULL
CXorf66	347487	genome.wustl.edu	37	X	139038644	139038644	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001013403.2	-1	validated	p.K166T	0.000	995	0%	465	24.7%	0	-	benign(0.009)	tolerated(0.4)	neutral(0.017)	NULL
SOX3	6658	genome.wustl.edu	37	X	139586541	139586541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005634.2	-1	reviewed	p.L229I	1.000	18	0%	19	26.3%	3	0%	possibly_damaging(0.643)	tolerated(0.12)	deleterious(0.486)	NULL
ENSG00000207041	0	genome.wustl.edu	37	X	140212218	140212218	+	RNA	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000384314	-1	known	NULL	0.000	285	0%	263	19.8%	0	-	-	-	-	-
MAGEC3	139081	genome.wustl.edu	37	X	140969522	140969522	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_138702.1	+1	reviewed	p.I283	0.001	328	0%	103	17.5%	0	-	-	-	-	HMMPfam_MAGE
MAGEC1	9947	genome.wustl.edu	37	X	140995273	140995273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005462.4	+1	reviewed	p.P695S	0.001	103	0%	81	21%	0	-	unknown(0)	tolerated(0.22)	-	NULL
MAGEC2	51438	genome.wustl.edu	37	X	141291041	141291041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_016249.3	-1	reviewed	p.S245P	0.002	271	0%	241	23.2%	0	-	benign(0.021)	tolerated(0.56)	neutral(0.007)	HMMPfam_MAGE
SLITRK4	139065	genome.wustl.edu	37	X	142716851	142716851	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173078.3	-1	reviewed	p.E692*	1.000	151	0%	140	25%	2	0%	-	-	-	NULL
SLITRK4	139065	genome.wustl.edu	37	X	142718719	142718719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173078.3	-1	reviewed	p.N69S	1.000	57	0%	93	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
SPANXN2	494119	genome.wustl.edu	37	X	142795281	142795281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009615.1	-1	provisional	p.G133R	0.000	801	0%	295	12.2%	0	-	unknown(0)	tolerated(0.74)	-	NULL
SPANXN2	494119	genome.wustl.edu	37	X	142795303	142795303	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009615.1	-1	provisional	p.D125	0.000	830	0.2%	299	14.7%	0	-	-	-	-	NULL
UBE2NL	389898	genome.wustl.edu	37	X	142967263	142967263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001012989.1	+1	reviewed	p.P21T	1.000	106	0%	78	14.1%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
SPANXN1	494118	genome.wustl.edu	37	X	144337274	144337274	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009614.2	+1	reviewed	p.A53	0.000	906	0%	389	17.7%	0	-	-	-	-	HMMPfam_SPAN-X
SLITRK2	84631	genome.wustl.edu	37	X	144903965	144903965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144003.2	+1	reviewed	p.L8I	1.000	178	0%	244	25%	0	-	benign(0.034)	tolerated(0.42)	neutral(0.016)	NULL
SLITRK2	84631	genome.wustl.edu	37	X	144905975	144905975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001144003.2	+1	reviewed	p.D678N	0.998	132	0%	150	22%	0	-	benign(0.097)	tolerated(0.5)	neutral(0.018)	NULL
FMR1	2332	genome.wustl.edu	37	X	147014233	147014233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002024.5	+1	reviewed	p.S277R	1.000	314	0.3%	166	17.5%	16	0%	benign(0.327)	tolerated(0.25)	neutral(0.139)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
FMR1	2332	genome.wustl.edu	37	X	147024799	147024799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002024.5	+1	reviewed	p.P475L	1.000	331	0%	206	21.4%	23	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
FMR1	2332	genome.wustl.edu	37	X	147027130	147027130	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002024.5	+1	reviewed	p.S577	0.984	360	0%	210	17.6%	36	86.1%	possibly_damaging(0.877)	deleterious(0)	deleterious(0.786)	NULL
FMR1	2332	genome.wustl.edu	37	X	147030348	147030348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002024.5	+1	reviewed	p.V628A	1.000	252	0%	133	17.3%	55	92.7%	-	-	-	NULL
FMR1NB	158521	genome.wustl.edu	37	X	147084741	147084741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152578.2	+1	validated	p.A100T	0.000	405	0%	322	14.3%	0	-	benign(0.223)	tolerated(0.16)	neutral(0.081)	NULL
AFF2	2334	genome.wustl.edu	37	X	147733641	147733641	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000342251	+1	known	e2+1	1.000	605	0%	371	18.1%	0	-	-	-	-	-
AFF2	2334	genome.wustl.edu	37	X	148044367	148044367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002025.3	+1	reviewed	p.G938V	0.655	287	0%	125	11.2%	2	0%	benign(0.155)	tolerated(0.09)	neutral(0.310)	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	148068930	148068930	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002025.3	+1	reviewed	p.V1219	0.988	334	0%	133	24.8%	2	0%	-	-	-	HMMPfam_AF-4
IDS	3423	genome.wustl.edu	37	X	148564676	148564676	+	Silent	SNP	A	A	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000202.5	-1	reviewed	p.V418	0.011	147	0%	59	23.7%	27	0%	-	-	-	superfamily_Alkaline phosphatase-like
MAGEA8	4107	genome.wustl.edu	37	X	149013422	149013422	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005364.4	+1	reviewed	p.K126Q	0.016	203	0%	254	20.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MAGE
MAGEA8	4107	genome.wustl.edu	37	X	149013493	149013493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005364.4	+1	reviewed	p.H149Q	0.014	298	0.7%	322	22%	0	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMPfam_MAGE
MAGEA8	4107	genome.wustl.edu	37	X	149013919	149013919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005364.4	+1	reviewed	p.E291D	0.002	128	0%	133	15.8%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
MTM1	4534	genome.wustl.edu	37	X	149826443	149826443	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000252.2	+1	reviewed	p.E401D	0.005	406	0%	117	23.1%	4	0%	benign(0)	tolerated(0.39)	neutral(0.016)	superfamily_SSF52799
MTM1	4534	genome.wustl.edu	37	X	149828138	149828138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000252.2	+1	reviewed	p.R421Q	1.000	569	0%	183	22.4%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52799
MTMR1	8776	genome.wustl.edu	37	X	149901025	149901025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003828.2	+1	reviewed	p.W293C	1.000	184	0%	35	20%	6	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
MTMR1	8776	genome.wustl.edu	37	X	149905164	149905164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003828.2	+1	reviewed	p.R385H	0.946	313	0%	84	17.9%	19	78.9%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_(Phosphotyrosine protein) phosphatases II
MTMR1	8776	genome.wustl.edu	37	X	149919523	149919523	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000451863	+1	known	p.R385*	0.000	39	0%	12	41.7%	2	100%	-	-	-	NULL
HMGB3	3149	genome.wustl.edu	37	X	150156269	150156269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005342.2	+1	validated	p.S162L	0.997	436	0%	448	13.6%	102	0%	benign(0.005)	deleterious(0.03)	neutral(0.364)	HMMSmart_HMG,superfamily_HMG-box
GPR50	9248	genome.wustl.edu	37	X	150348307	150348307	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004224.3	+1	reviewed	p.L84	1.000	387	0%	396	21.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR50	9248	genome.wustl.edu	37	X	150349723	150349723	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004224.3	+1	reviewed	p.D556	0.030	86	0%	102	26.5%	0	-	-	-	-	NULL
PASD1	139135	genome.wustl.edu	37	X	150840826	150840826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173493.2	+1	reviewed	p.R537W	0.000	387	0.3%	124	16.1%	0	-	unknown(0)	deleterious(0)	-	NULL
PASD1	139135	genome.wustl.edu	37	X	150840894	150840894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173493.2	+1	reviewed	p.E559D	0.001	140	0%	66	18.2%	0	-	unknown(0)	deleterious(0.02)	-	NULL
PASD1	139135	genome.wustl.edu	37	X	150842606	150842606	+	Missense_Mutation	SNP	C	C	A	rs182668710	by1000genomes	TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_173493.2	+1	reviewed	p.T708N	0.000	145	0%	89	15.7%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
PRRG3	79057	genome.wustl.edu	37	X	150869312	150869312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_024082.3	+1	validated	p.T168I	0.006	37	0%	50	32%	0	-	benign(0.323)	tolerated(0.4)	neutral(0.117)	NULL
PRRG3	79057	genome.wustl.edu	37	X	150873776	150873776	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000448324	+1	known	p.F60	0.000	165	0%	105	28.6%	0	-	-	-	-	NULL
MAGEA4	4103	genome.wustl.edu	37	X	151092445	151092445	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001011548.1	+1	reviewed	p.E103	0.000	189	0%	87	11.5%	0	-	-	-	-	NULL
MAGEA4	4103	genome.wustl.edu	37	X	151092622	151092622	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001011548.1	+1	reviewed	p.I162	0.082	282	0%	142	28.9%	0	-	-	-	-	HMMPfam_MAGE
GABRA3	2556	genome.wustl.edu	37	X	151358315	151358315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000808.3	-1	reviewed	p.V344I	1.000	142	0%	49	10.2%	0	-	probably_damaging(0.974)	tolerated(0.18)	deleterious(0.472)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRA3	2556	genome.wustl.edu	37	X	151514097	151514097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000808.3	-1	reviewed	p.R73H	1.000	307	0%	77	22.1%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRQ	55879	genome.wustl.edu	37	X	151821202	151821202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018558.2	+1	reviewed	p.L453I	0.000	80	0%	74	31.1%	0	-	possibly_damaging(0.653)	deleterious(0.01)	deleterious(0.635)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRQ	55879	genome.wustl.edu	37	X	151821314	151821314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_018558.2	+1	reviewed	p.G490D	0.000	84	0%	41	26.8%	0	-	probably_damaging(0.994)	tolerated(0.52)	neutral(0.461)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
NSDHL	50814	genome.wustl.edu	37	X	152018953	152018953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001129765.1	+1	reviewed	p.L85I	1.000	358	0.3%	154	24%	31	0%	probably_damaging(0.966)	tolerated(0.24)	neutral(0.445)	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd
NSDHL	50814	genome.wustl.edu	37	X	152037624	152037624	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001129765.1	+1	reviewed	p.T362	0.013	89	0%	68	26.5%	56	89.2%	-	-	-	superfamily_NAD(P)-bd
PNMA5	114824	genome.wustl.edu	37	X	152159137	152159137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001103150.1	-1	validated	p.A336T	0.000	73	0%	64	12.5%	0	-	benign(0.221)	tolerated(0.56)	neutral(0.028)	NULL
PNMA5	114824	genome.wustl.edu	37	X	152159242	152159242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001103150.1	-1	validated	p.A301S	0.000	32	0%	41	14.6%	0	-	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
PNMA3	29944	genome.wustl.edu	37	X	152225699	152225699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_013364.4	+1	reviewed	p.R96H	0.000	139	0%	197	20.3%	0	-	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	NULL
MAGEA1	4100	genome.wustl.edu	37	X	152482582	152482582	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004988.4	-1	reviewed	p.I143	0.053	352	0%	273	16.1%	0	-	-	-	-	HMMPfam_MAGE
ZNF275	10838	genome.wustl.edu	37	X	152608917	152608917	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000095634	+1	known	p.I18L	0.001	421	0%	532	22.6%	0	-	-	-	-	NULL
HAUS7	55559	genome.wustl.edu	37	X	152722674	152722674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017518.6	-1	reviewed	p.A133T	0.000	126	0%	119	25.2%	48	87.5%	benign(0.184)	tolerated(0.16)	neutral(0.076)	NULL
ATP2B3	492	genome.wustl.edu	37	X	152815521	152815521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001001344.2	+1	reviewed	p.A534T	0.888	56	0%	61	31.1%	0	-	benign(0.148)	tolerated(0.16)	neutral(0.072)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
FAM58A	92002	genome.wustl.edu	37	X	152853870	152853870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000276345	-1	known	p.V232M	1.000	527	0%	384	16.4%	25	44%	benign(0.067)	tolerated(0.59)	neutral(0.009)	HMMSmart_CYCLIN,superfamily_Cyclin_like
FAM58A	92002	genome.wustl.edu	37	X	152857994	152857994	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_152274.3	-1	reviewed	p.R209*	0.024	53	0%	53	32.1%	44	0%	-	-	-	NULL
DUSP9	1852	genome.wustl.edu	37	X	152915045	152915045	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000433144	+1	known	p.S215L	0.201	144	0%	136	16.9%	0	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
PNCK	139728	genome.wustl.edu	37	X	152936435	152936435	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001039582.3	-1	validated	p.R331	0.993	104	0%	139	20.9%	2	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PNCK	139728	genome.wustl.edu	37	X	152938717	152938717	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001135740.1	-1	validated	p.R3	0.000	123	0%	112	22.3%	0	-	-	-	-	NULL
SLC6A8	6535	genome.wustl.edu	37	X	152957459	152957459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005629.3	+1	reviewed	p.L225P	0.999	271	0%	364	12.4%	20	85%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_SNF
PLXNB3	5365	genome.wustl.edu	37	X	153032394	153032394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005393.2	+1	reviewed	p.P38T	0.014	114	0%	158	22.2%	0	-	benign(0.223)	tolerated(0.25)	neutral(0.059)	NULL
PLXNB3	5365	genome.wustl.edu	37	X	153035824	153035824	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005393.2	+1	reviewed	p.F606	0.262	161	0%	170	23.5%	0	-	-	-	-	NULL
PLXNB3	5365	genome.wustl.edu	37	X	153040370	153040370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005393.2	+1	reviewed	p.L1323M	0.999	27	0%	30	26.7%	0	-	unknown(0)	-	-	NULL
SSR4	6748	genome.wustl.edu	37	X	153061903	153061903	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_006280.1	+1	reviewed	p.E28*	1.000	192	0%	233	27.9%	956	0%	-	-	-	HMMPfam_TRAP-delta
PDZD4	57595	genome.wustl.edu	37	X	153070251	153070251	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_032512.2	-1	provisional	p.N289	0.989	37	0%	52	21.2%	0	-	-	-	-	NULL
L1CAM	3897	genome.wustl.edu	37	X	153130077	153130077	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000425.3	-1	reviewed	p.C1043*	0.738	189	0%	168	11.3%	1	0%	-	-	-	superfamily_Fibronectin type III
ENSG00000196987	0	genome.wustl.edu	37	X	153153970	153153970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000357566	+1	known	p.D137E	0.000	115	0%	152	24.3%	0	-	unknown(0)	-	-	NULL
HCFC1	3054	genome.wustl.edu	37	X	153220144	153220144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005334.2	-1	reviewed	p.A1236S	0.102	64	0%	26	42.3%	21	4.7%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
HCFC1	3054	genome.wustl.edu	37	X	153220617	153220617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_005334.2	-1	reviewed	p.P1078L	0.998	252	0%	191	24.6%	14	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM187	8269	genome.wustl.edu	37	X	153247540	153247540	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_003492.2	+1	reviewed	p.F9	0.000	35	0%	43	39.5%	19	5.2%	-	-	-	NULL
MECP2	4204	genome.wustl.edu	37	X	153296852	153296852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001110792.1	-1	reviewed	p.E155K	1.000	235	0%	262	20.2%	34	0%	benign(0.253)	tolerated(0.09)	neutral(0.323)	HMMPfam_MBD,HMMSmart_MBD,superfamily_DNA-binding_integrase-type
OPN1LW	5956	genome.wustl.edu	37	X	153416321	153416321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_020061.4	+1	reviewed	p.E102D	1.000	170	0%	177	27.7%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_7tm_1,superfamily_SSF81321
OPN1MW2	728458	genome.wustl.edu	37	X	153490491	153490491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001048181.2	+1	reviewed	p.A76V	0.968	151	0%	141	13.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
TKTL1	8277	genome.wustl.edu	37	X	153555945	153555945	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_012253.3	+1	validated	p.R470	0.290	332	0%	251	22.3%	0	-	-	-	-	HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like
FLNA	2316	genome.wustl.edu	37	X	153581291	153581291	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001110556.1	-1	reviewed	p.G2076	0.979	132	0%	142	25.4%	161	0%	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNA	2316	genome.wustl.edu	37	X	153581376	153581376	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001110556.1	-1	reviewed	p.R2073	0.772	149	0%	135	18.5%	183	0%	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
EMD	2010	genome.wustl.edu	37	X	153608311	153608311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000117.2	+1	reviewed	p.S66L	0.149	227	0%	243	21%	103	0%	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
EMD	2010	genome.wustl.edu	37	X	153609522	153609522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000117.2	+1	reviewed	p.H244N	0.519	230	0%	224	25.9%	148	77.7%	benign(0.006)	deleterious(0.02)	neutral(0.383)	NULL
DNASE1L1	1774	genome.wustl.edu	37	X	153633335	153633335	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001009932.1	-1	reviewed	e2+1	1.000	91	0%	113	19.5%	0	-	-	-	-	-
FAM50A	9130	genome.wustl.edu	37	X	153678255	153678255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004699.2	+1	reviewed	p.V269I	1.000	83	0%	104	26.9%	292	0%	benign(0.335)	tolerated(0.11)	neutral(0.377)	HMMPfam_XAP5
FAM50A	9130	genome.wustl.edu	37	X	153678605	153678605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_004699.2	+1	reviewed	p.H317Y	1.000	71	0%	99	21.2%	273	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_XAP5
PLXNA3	55558	genome.wustl.edu	37	X	153689079	153689079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017514.3	+1	reviewed	p.L186I	1.000	23	0%	33	24.2%	3	0%	possibly_damaging(0.539)	deleterious(0)	deleterious(0.627)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
PLXNA3	55558	genome.wustl.edu	37	X	153694178	153694178	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017514.3	+1	reviewed	p.P840	0.087	35	0%	51	29.4%	6	0%	-	-	-	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
PLXNA3	55558	genome.wustl.edu	37	X	153695444	153695444	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017514.3	+1	reviewed	p.V1051G	0.998	41	0%	54	13%	10	40%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
PLXNA3	55558	genome.wustl.edu	37	X	153695712	153695712	+	Silent	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017514.3	+1	reviewed	p.S1113	1.000	22	0%	29	17.2%	7	0%	-	-	-	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
PLXNA3	55558	genome.wustl.edu	37	X	153698802	153698802	+	Silent	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_017514.3	+1	reviewed	p.F1668	0.984	92	0%	89	13.5%	23	4.3%	-	-	-	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
UBL4A	8266	genome.wustl.edu	37	X	153714218	153714218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_014235.3	-1	provisional	p.Q85H	0.000	128	0%	180	23.3%	19	0%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
GAB3	139716	genome.wustl.edu	37	X	153940975	153940975	+	Silent	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001081573.1	-1	reviewed	p.L200	0.099	114	0%	49	10.2%	0	-	-	-	-	NULL
GAB3	139716	genome.wustl.edu	37	X	153941671	153941671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001081573.1	-1	reviewed	p.P136H	0.924	204	0%	103	22.3%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
GAB3	139716	genome.wustl.edu	37	X	153944311	153944311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_001081573.1	-1	reviewed	p.E122D	0.253	73	0%	71	26.8%	1	0%	benign(0.008)	tolerated(0.26)	neutral(0.034)	NULL
MPP1	4354	genome.wustl.edu	37	X	154009541	154009541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002436.3	-1	reviewed	p.F399L	1.000	366	0%	320	21.6%	29	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
MPP1	4354	genome.wustl.edu	37	X	154011765	154011765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_002436.3	-1	reviewed	p.R295C	1.000	145	0%	130	20%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000157576	0	genome.wustl.edu	37	X	154045472	154045472	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	ENST00000378969	-1	known	p.E69*	1.000	46	0%	99	14.1%	0	-	-	-	-	HMMPfam_HMG14_17,HMMSmart_SM00527
F8	2157	genome.wustl.edu	37	X	154134840	154134840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000132.3	-1	reviewed	p.S1743I	0.049	271	0.4%	135	20%	0	-	probably_damaging(0.976)	tolerated(0.22)	neutral(0.460)	superfamily_Cupredoxins
F8	2157	genome.wustl.edu	37	X	154182234	154182234	+	Silent	SNP	G	G	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000132.3	-1	reviewed	p.R612	0.991	359	0%	197	17.8%	0	-	-	-	-	superfamily_Cupredoxins
F8	2157	genome.wustl.edu	37	X	154250778	154250778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A059-01A-21D-A122-09	TCGA-AP-A059-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f7462212-0185-434f-8774-86b41d757dd9	ed777919-93d9-483a-a5e8-364f89f19353	NM_000132.3	-1	reviewed	p.C17Y	0.056	472	0%	433	22.4%	0	-	possibly_damaging(0.46)	deleterious(0)	deleterious(0.596)	superfamily_Cupredoxins
