Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABLIM1	3983	genome.wustl.edu	37	10	116335275	116335275	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	10	116335275	116335275	C	T	SNP	ABLIM1	NM_002313.5	human	genbank	58_37c	-1	reviewed	missense	c.463	p.G155R	1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
ACADSB	37	genome.wustl.edu	36	10	124768562	124768562	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	10	124768562	124768562	T	C	SNP	ACADSB	NM_001609.3	human	genbank	58_37c	+1	reviewed	missense	c.17	p.V6A	0.000	NULL	PatternScan_ACYL_COA_DH_1,PatternScan_ACYL_COA_DH_2,HMMPfam_Acyl-CoA_dh_1,HMMPfam_Acyl-CoA_dh_M,HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,superfamily_Acyl-CoA dehydrogenase NM domain-like	-	no_errors
ADAMTSL3	57188	genome.wustl.edu	37	15	84539708	84539708	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	15	84539708	84539708	C	G	SNP	ADAMTSL3	NM_207517.2	human	genbank	58_37c	+1	validated	missense	c.957	p.F319L	1.000	NULL	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ADCY6	112	genome.wustl.edu	37	12	49164616	49164616	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	12	49164616	49164616	G	C	SNP	ADCY6	NM_015270.3	human	genbank	58_37c	-1	reviewed	silent	c.3189	p.A1063	1.000	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
APLP2	334	genome.wustl.edu	37	11	130003552	130003552	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	11	130003552	130003552	A	-	DEL	APLP2	NM_001642.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.1613	p.R539fs	1.000	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein	HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_Amyloid beta a4 protein copper binding domain (domain 2),superfamily_A heparin-binding domain,HMMPfam_APP_amyloid,PatternScan_A4_EXTRA,PatternScan_A4_INTRA,superfamily_CAPPD an extracellular domain of amyloid beta A4 protein	-	no_errors
ATN1	1822	genome.wustl.edu	37	12	7045035	7045035	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	12	7045035	7045035	C	T	SNP	ATN1	NM_001007026.1	human	genbank	58_37c	+1	reviewed	missense	c.605	p.T202I	0.014	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
C16orf54	283897	genome.wustl.edu	37	16	29756269	29756269	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	16	29756269	29756269	G	T	SNP	C16orf54	NM_175900.3	human	genbank	58_37c	-1	validated	missense	c.4	p.P2T	0.980	NULL	NULL	-	no_errors
C17orf67	339210	genome.wustl.edu	37	17	54872495	54872495	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	17	54872495	54872495	T	C	SNP	C17orf67	NM_001085430.1	human	genbank	58_37c	-1	validated	missense	c.275	p.Q92R	1.000	NULL	NULL	-	no_errors
CHML	1122	genome.wustl.edu	37	1	241797975	241797975	+	Missense_Mutation	SNP	T	T	C	rs146276550	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	1	241797975	241797975	T	C	SNP	CHML	NM_001821.3	human	genbank	58_37c	-1	reviewed	missense	c.1094	p.Q365R	0.997	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
DNAH17	8632	genome.wustl.edu	37	17	76455082	76455082	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	17	76455082	76455082	C	T	SNP	DNAH17	ENST00000389840	human	ensembl	58_37c	-1	known	splice_site	c.9819+1	e60+1	1.000	-	-	-	no_errors
DYTN	0	genome.wustl.edu	37	2	207572064	207572064	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	2	207572064	207572064	C	T	SNP	DYTN	NM_001093730.1	human	genbank	58_37c	-1	provisional	silent	c.258	p.P86	0.000	HMMPfam_efhand_1,superfamily_SSF47473	HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_SSF47473	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16950252	16950252	+	RNA	DEL	G	G	-	rs55674375	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	1	16950252	16950252	G	-	DEL	ENSG00000245549	ENST00000501442	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.356	-	-	-	no_errors
FAM110A	83541	genome.wustl.edu	37	20	825502	825502	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	20	825502	825502	C	T	SNP	FAM110A	NM_001042353.1	human	genbank	58_37c	+1	validated	missense	c.55	p.R19C	1.000	NULL	NULL	-	no_errors
FAM129B	64855	genome.wustl.edu	37	9	130270454	130270454	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	9	130270454	130270454	A	T	SNP	FAM129B	NM_022833.2	human	genbank	58_37c	-1	validated	missense	c.1460	p.V487E	1.000	NULL	HMMSmart_PH,superfamily_SSF50729	-	no_errors
FANCA	2175	genome.wustl.edu	37	16	89815165	89815165	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	16	89815165	89815165	G	A	SNP	FANCA	NM_000135.2	human	genbank	58_37c	-1	reviewed	missense	c.3250	p.R1084C	0.000	NULL	HMMPfam_Fanconi_A	-	no_errors
FCRL5	83416	genome.wustl.edu	37	1	157516743	157516743	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	1	157516743	157516743	A	T	SNP	FCRL5	NM_031281.2	human	genbank	58_37c	-1	validated	missense	c.297	p.D99E	0.000	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ITGA6	3655	genome.wustl.edu	37	2	173332209	173332209	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	2	173332209	173332209	C	T	SNP	ITGA6	NM_001079818.1	human	genbank	58_37c	+1	reviewed	missense	c.308	p.A103V	1.000	superfamily_Integrin alpha N-terminal domain	HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain	-	no_errors
ITSN1	6453	genome.wustl.edu	37	21	35247757	35247757	+	Missense_Mutation	SNP	C	C	T	rs187930521	by1000genomes	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	21	35247757	35247757	C	T	SNP	ITSN1	NM_003024.2	human	genbank	58_37c	+1	reviewed	missense	c.4273	p.R1425W	1.000	superfamily_DBL homology domain (DH-domain)	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00027,PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00054,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_PH domain-like	-	no_errors
KIAA1279	26128	genome.wustl.edu	37	10	70764802	70764802	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	10	70764802	70764802	G	T	SNP	KIAA1279	NM_015634.3	human	genbank	58_37c	+1	reviewed	missense	c.526	p.V176F	1.000	superfamily_SSF48452	superfamily_SSF48452	-	no_errors
LIN9	286826	genome.wustl.edu	37	1	226421155	226421157	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	1	226421155	226421157	CTT	-	DEL	LIN9	NM_173083.2	human	genbank	58_37c	-1	provisional	in_frame_del	c.1363_1361	p.E454in_frame_del	1.000:0.924:1.000	NULL	HMMPfam_DIRP	-	no_errors
LOC100286951	0	genome.wustl.edu	37	8	2092910	2092910	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	8	2092910	2092910	G	C	SNP	LOC100286951	XM_002342813.1	human	genbank	58_37c	-1	model	missense	c.121	p.R41G	0.000	NULL	NULL	-	no_errors
MADD	8567	genome.wustl.edu	37	11	47350233	47350233	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	11	47350233	47350233	G	A	SNP	MADD	NM_003682.3	human	genbank	58_37c	+1	reviewed	missense	c.4817	p.S1606N	1.000	NULL	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800	-	no_errors
MAP4	4134	genome.wustl.edu	37	3	47956413	47956413	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	3	47956413	47956413	C	T	SNP	MAP4	NM_002375.4	human	genbank	58_37c	-1	reviewed	silent	c.1893	p.T631	0.029	NULL	HMMPfam_Tubulin-binding,PatternScan_TAU_MAP	-	no_errors
METTL2A	339175	genome.wustl.edu	37	17	60512605	60512606	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	17	60512605	60512606	-	T	INS	METTL2A	NM_181725.3	human	genbank	58_37c	+1	validated	frame_shift_ins	c.621_622	p.V208fs	1.000:1.000	HMMPfam_Methyltransf_12,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_Methyltransf_12,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
MORN1	79906	genome.wustl.edu	37	1	2267971	2267971	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	1	2267971	2267971	G	A	SNP	MORN1	NM_024848.1	human	genbank	58_37c	-1	provisional	missense	c.1187	p.S396F	0.002	NULL	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	-	no_errors
MYO1F	4542	genome.wustl.edu	37	19	8587693	8587693	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	19	8587693	8587693	G	T	SNP	MYO1F	NM_012335.3	human	genbank	58_37c	-1	validated	missense	c.2875	p.P959T	0.970	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_TH1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NELL2	4753	genome.wustl.edu	37	12	45097587	45097587	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	12	45097587	45097587	T	-	DEL	NELL2	NM_001145107.1	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1390	p.R464fs	0.999	HMMSmart_EGF,superfamily_ConA_like_lec_gl,superfamily_SSF57196	PatternScan_ASX_HYDROXYL,HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMSmart_LamG,HMMSmart_EGF_CA,HMMSmart_TSPN,HMMSmart_EGF,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors
PAPOLA	10914	genome.wustl.edu	37	14	97022708	97022708	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	14	97022708	97022708	A	G	SNP	PAPOLA	NM_032632.3	human	genbank	58_37c	+1	validated	silent	c.1962	p.S654	0.996	NULL	HMMPfam_NTP_transf_2,HMMPfam_PAP_RNA-bind,HMMPfam_PAP_central,superfamily_PAP/Archaeal CCA-adding enzyme C-terminal domain,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	rs121913284	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	3	178921553	178921553	T	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1035	p.N345K	1.000	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PMS1	5378	genome.wustl.edu	37	2	190719470	190719470	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	2	190719470	190719470	C	T	SNP	PMS1	NM_000534.4	human	genbank	58_37c	+1	reviewed	missense	c.1472	p.S491L	0.062	NULL	HMMPfam_HMG_box,HMMSmart_HMG,HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase,superfamily_HMG-box,HMMPfam_DNA_mis_repair,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal_S5_D2-typ_fold	-	no_errors
PPIP5K1	0	genome.wustl.edu	37	15	43873257	43873257	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	15	43873257	43873257	C	T	SNP	PPIP5K1	NM_001130858.1	human	genbank	58_37c	-1	validated	missense	c.1004	p.G335D	1.000	superfamily_Glutathione synthetase ATP-binding domain-like	HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1,superfamily_Phosphoglycerate mutase-like,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
RNF175	285533	genome.wustl.edu	37	4	154669848	154669848	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	4	154669848	154669848	A	G	SNP	RNF175	NM_173662.2	human	genbank	58_37c	-1	validated	silent	c.195	p.I65	0.806	NULL	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
RPL7L1	285855	genome.wustl.edu	37	6	42851236	42851236	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	6	42851236	42851236	A	T	SNP	RPL7L1	NM_198486.2	human	genbank	58_37c	+1	provisional	silent	c.168	p.L56	0.000	NULL	HMMPfam_Ribosomal_L30,superfamily_Ribosomal_L30,PatternScan_RIBOSOMAL_L30	-	no_errors
SERPINB6	5269	genome.wustl.edu	37	6	2949205	2949205	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	6	2949205	2949205	A	T	SNP	SERPINB6	NM_004568.4	human	genbank	58_37c	-1	validated	silent	c.672	p.V224	0.000	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
SMYD1	150572	genome.wustl.edu	37	2	88387504	88387504	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	2	88387504	88387504	C	T	SNP	SMYD1	NM_198274.2	human	genbank	58_37c	+1	provisional	silent	c.438	p.D146	0.340	HMMSmart_SET,superfamily_SSF82199	HMMPfam_SET,HMMSmart_SET,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,superfamily_SSF82199	-	no_errors
STAB1	23166	genome.wustl.edu	37	3	52556668	52556668	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	3	52556668	52556668	C	T	SNP	STAB1	NM_015136.2	human	genbank	58_37c	+1	reviewed	silent	c.6708	p.V2236	0.000	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,superfamily_C-type lectin-like	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain,HMMSmart_SM00179,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_C-type lectin-like,PatternScan_CYTOCHROME_P450,superfamily_EGF/Laminin	-	no_errors
USP53	54532	genome.wustl.edu	37	4	120182931	120182931	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	4	120182931	120182931	T	A	SNP	USP53	NM_019050.2	human	genbank	58_37c	+1	validated	missense	c.884	p.I295N	1.000	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,superfamily_SSF54001	-	no_errors
ZFP42	132625	genome.wustl.edu	37	4	188924860	188924860	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TR-01A-11D-A099-09	TCGA-AR-A0TR-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	58ca11bf-17b0-4cff-b210-5b85d8e66ef5	7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31	4	188924860	188924860	C	T	SNP	ZFP42	NM_174900.3	human	genbank	58_37c	+1	validated	missense	c.899	p.A300V	0.011	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
