Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AIM1	202	genome.wustl.edu	37	6	106991455	106991455	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	6	106991455	106991455	G	C	SNP	AIM1	NM_001624.2	human	genbank	58_37c	+1	validated	missense	c.3798	p.M1266I	1.000	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF	HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_RicinB_like,superfamily_G_crystallin_SF	-	no_errors
AKR1C1	1645	genome.wustl.edu	37	10	5010513	5010513	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	5010513	5010513	G	A	SNP	AKR1C1	NM_001353.5	human	genbank	58_37c	+1	reviewed	missense	c.382	p.V128M	0.000	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3,PatternScan_ALDOKETO_REDUCTASE_1	-	no_errors
ARHGAP9	64333	genome.wustl.edu	37	12	57872994	57872994	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	12	57872994	57872994	G	A	SNP	ARHGAP9	NM_032496.2	human	genbank	58_37c	-1	reviewed	missense	c.196	p.R66C	0.966	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_WW_Rsp5_WWP,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,superfamily_SSF50729	-	no_errors
ARHGEF4	50649	genome.wustl.edu	37	2	131704164	131704164	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	131704164	131704164	C	T	SNP	ARHGEF4	NM_015320.2	human	genbank	58_37c	+1	reviewed	missense	c.383	p.T128M	0.000	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
B3GALTL	145173	genome.wustl.edu	37	13	31897924	31897924	+	Silent	SNP	C	C	T	rs139927237	byFrequency	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	13	31897924	31897924	C	T	SNP	B3GALTL	NM_194318.3	human	genbank	58_37c	+1	reviewed	silent	c.1221	p.L407	0.567	HMMPfam_Fringe	PatternScan_ER_TARGET,HMMPfam_Fringe	-	no_errors
C10orf12	26148	genome.wustl.edu	37	10	98744191	98744191	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	98744191	98744191	G	A	SNP	C10orf12	NM_015652.2	human	genbank	58_37c	+1	predicted	missense	c.3044	p.R1015H	0.106	NULL	NULL	-	no_errors
C21orf121	150142	genome.wustl.edu	37	21	43444748	43444748	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	21	43444748	43444748	C	G	SNP	C21orf121	NR_027273.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
C9orf163	158055	genome.wustl.edu	37	9	139379395	139379395	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	9	139379395	139379395	C	T	SNP	C9orf163	NM_152571.2	human	genbank	58_37c	+1	validated	silent	c.495	p.L165	0.000	NULL	NULL	-	no_errors
CCDC138	165055	genome.wustl.edu	37	2	109473397	109473397	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	109473397	109473397	A	T	SNP	CCDC138	NM_144978.1	human	genbank	58_37c	+1	provisional	missense	c.1664	p.D555V	1.000	NULL	NULL	-	no_errors
CFHR4	10877	genome.wustl.edu	37	1	196871653	196871653	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	196871653	196871653	A	G	SNP	CFHR4	NM_006684.2	human	genbank	58_37c	+1	validated	missense	c.164	p.Y55C	0.000	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	-	no_errors
COIL	8161	genome.wustl.edu	37	17	55038347	55038347	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	17	55038347	55038347	G	A	SNP	COIL	NM_004645.2	human	genbank	58_37c	-1	reviewed	nonsense	c.34	p.Q12*	0.990	NULL	NULL	-	no_errors
COL5A3	50509	genome.wustl.edu	37	19	10114309	10114309	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	19	10114309	10114309	C	T	SNP	COL5A3	NM_015719.3	human	genbank	58_37c	-1	reviewed	missense	c.781	p.G261R	1.000	NULL	HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
COQ10A	93058	genome.wustl.edu	37	12	56663001	56663001	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	12	56663001	56663001	C	T	SNP	COQ10A	NM_144576.3	human	genbank	58_37c	+1	validated	missense	c.440	p.S147F	1.000	HMMPfam_Polyketide_cyc	HMMPfam_Polyketide_cyc	-	no_errors
CTH	1491	genome.wustl.edu	37	1	70897810	70897810	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	70897810	70897810	C	T	SNP	CTH	NM_001902.4	human	genbank	58_37c	+1	reviewed	nonsense	c.769	p.R257*	1.000	HMMPfam_Cys_Met_Meta_PP,superfamily_PLP-dependent transferases	HMMPfam_Cys_Met_Meta_PP,PatternScan_CYS_MET_METAB_PP,superfamily_PLP-dependent transferases	-	no_errors
CTNNA1	1495	genome.wustl.edu	37	5	138117646	138117646	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	5	138117646	138117646	C	T	SNP	CTNNA1	NM_001903.2	human	genbank	58_37c	+1	validated	silent	c.33	p.F11	1.000	NULL	PatternScan_VINCULIN_1,HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
DLX3	1747	genome.wustl.edu	37	17	48070938	48070938	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	17	48070938	48070938	C	T	SNP	DLX3	NM_005220.2	human	genbank	58_37c	-1	reviewed	silent	c.342	p.E114	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
DNHD1	144132	genome.wustl.edu	37	11	6519529	6519529	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	11	6519529	6519529	C	G	SNP	DNHD1	NM_173589.3	human	genbank	58_37c	+1	validated	silent	c.84	p.V28	0.003	NULL	NULL	-	no_errors
ELAC2	60528	genome.wustl.edu	37	17	12903496	12903496	+	Missense_Mutation	SNP	G	G	A	rs140657898	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	17	12903496	12903496	G	A	SNP	ELAC2	NM_018127.6	human	genbank	58_37c	-1	reviewed	missense	c.1400	p.A467V	0.000	NULL	HMMPfam_Lactamase_B,superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
FAP	2191	genome.wustl.edu	37	2	163044844	163044844	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	163044844	163044844	C	G	SNP	FAP	NM_004460.2	human	genbank	58_37c	-1	reviewed	missense	c.1649	p.R550T	0.005	superfamily_SSF53474	HMMPfam_Peptidase_S9,HMMPfam_DPPIV_N,PatternScan_PRO_ENDOPEP_SER,superfamily_SSF53474,superfamily_SSF82171	-	no_errors
FHDC1	85462	genome.wustl.edu	37	4	153889196	153889196	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	4	153889196	153889196	G	C	SNP	FHDC1	NM_033393.2	human	genbank	58_37c	+1	validated	missense	c.1165	p.E389Q	0.987	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
GCM2	9247	genome.wustl.edu	37	6	10876743	10876743	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	6	10876743	10876743	G	A	SNP	GCM2	NM_004752.3	human	genbank	58_37c	-1	reviewed	nonsense	c.391	p.R131*	1.000	HMMPfam_GCM,superfamily_GCM_motif	HMMPfam_GCM,superfamily_GCM_motif	-	no_errors
GREB1L	80000	genome.wustl.edu	37	18	19085428	19085428	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	18	19085428	19085428	C	T	SNP	GREB1L	NM_001142966.1	human	genbank	58_37c	+1	provisional	silent	c.4128	p.I1376	1.000	NULL	PatternScan_ASP_PROTEASE	-	no_errors
HCN4	10021	genome.wustl.edu	37	15	73615867	73615867	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	15	73615867	73615867	G	A	SNP	HCN4	NM_005477.2	human	genbank	58_37c	-1	reviewed	missense	c.2567	p.S856F	1.000	NULL	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Ion_trans_N,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324	-	no_errors
HEPH	9843	genome.wustl.edu	37	X	65427137	65427137	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	X	65427137	65427137	C	A	SNP	HEPH	NM_138737.3	human	genbank	58_37c	+1	reviewed	silent	c.2401	p.R801	0.000	superfamily_Cupredoxins	HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,PatternScan_MULTICOPPER_OXIDASE2,superfamily_Cupredoxins,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3	-	no_errors
IQCF3	401067	genome.wustl.edu	37	3	51864469	51864469	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	3	51864469	51864469	G	A	SNP	IQCF3	NM_001085479.1	human	genbank	58_37c	+1	provisional	silent	c.117	p.Q39	0.679	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
JAK3	3718	genome.wustl.edu	37	19	17945508	17945508	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	19	17945508	17945508	C	T	SNP	JAK3	NM_000215.3	human	genbank	58_37c	-1	reviewed	missense	c.2222	p.R741Q	0.046	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00252,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMSmart_SM00295,superfamily_SH2 domain	-	no_errors
LOC283116	283116	genome.wustl.edu	37	11	49053416	49053416	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	11	49053416	49053416	G	A	SNP	LOC283116	XM_208043.4	human	genbank	58_37c	+1	model	missense	c.265	p.E89K	0.710	HMMPfam_zf-B_box,HMMSmart_BBOX,superfamily_SSF57850	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
LPA	4018	genome.wustl.edu	37	6	160968970	160968970	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	6	160968970	160968970	C	T	SNP	LPA	NM_005577.2	human	genbank	58_37c	-1	reviewed	splice_site	c.5156-1	e32-1	0.965	-	-	-	no_errors
LRRC16B	90668	genome.wustl.edu	37	14	24532005	24532005	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	14	24532005	24532005	C	T	SNP	LRRC16B	NM_138360.3	human	genbank	58_37c	+1	validated	missense	c.2656	p.R886W	1.000	NULL	HMMSmart_SM00368,superfamily_RNI-like	-	no_errors
LY75	4065	genome.wustl.edu	37	2	160714934	160714934	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	160714934	160714934	A	T	SNP	LY75	NM_002349.2	human	genbank	58_37c	-1	validated	missense	c.2322	p.F774L	0.001	HMMSmart_SM00034,superfamily_C-type lectin-like	HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMSmart_SM00458,HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_Ricin B-like lectins,superfamily_Kringle-like,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_errors
MAOA	4128	genome.wustl.edu	37	X	43590602	43590602	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	X	43590602	43590602	A	G	SNP	MAOA	NM_000240.2	human	genbank	58_37c	+1	reviewed	missense	c.760	p.I254V	0.885	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
MAOB	4129	genome.wustl.edu	37	X	43698178	43698178	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	X	43698178	43698178	G	T	SNP	MAOB	NM_000898.4	human	genbank	58_37c	-1	reviewed	missense	c.215	p.A72D	1.000	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
MTSS1	9788	genome.wustl.edu	37	8	125565583	125565583	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	8	125565583	125565583	G	A	SNP	MTSS1	NM_014751.4	human	genbank	58_37c	-1	validated	missense	c.1918	p.R640W	0.108	NULL	HMMPfam_WH2,HMMPfam_IMD	-	no_errors
MYT1L	23040	genome.wustl.edu	37	2	1926197	1926197	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	1926197	1926197	C	A	SNP	MYT1L	NM_015025.2	human	genbank	58_37c	-1	validated	missense	c.1344	p.M448I	1.000	NULL	HMMPfam_zf-C2HC,HMMPfam_MYT1,PatternScan_EF_HAND_1,superfamily_SSF103637	-	no_errors
NOD1	10392	genome.wustl.edu	37	7	30496531	30496531	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	7	30496531	30496531	C	G	SNP	NOD1	NM_006092.2	human	genbank	58_37c	-1	reviewed	missense	c.7	p.E3Q	0.446	NULL	HMMPfam_CARD,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047	-	no_errors
PAICS	10606	genome.wustl.edu	37	4	57314718	57314718	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	4	57314718	57314718	G	T	SNP	PAICS	NM_001079525.1	human	genbank	58_37c	+1	reviewed	silent	c.549	p.L183	1.000	HMMPfam_SAICAR_synt,superfamily_SAICAR synthase-like	HMMPfam_AIRC,superfamily_N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase PurE),HMMPfam_SAICAR_synt,PatternScan_SAICAR_SYNTHETASE_1,PatternScan_SAICAR_SYNTHETASE_2,superfamily_SAICAR synthase-like	-	no_errors
PC	5091	genome.wustl.edu	37	11	66617203	66617203	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	11	66617203	66617203	G	T	SNP	PC	NM_000920.3	human	genbank	58_37c	-1	reviewed	nonsense	c.3026	p.S1009*	0.996	HMMPfam_PYC_OADA,superfamily_SSF89000	HMMPfam_Biotin_lipoyl,HMMPfam_HMGL-like,PatternScan_BIOTIN,HMMPfam_PYC_OADA,HMMPfam_CPSase_L_D2,HMMPfam_CPSase_L_chain,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,superfamily_Rudmnt_hyb_motif,superfamily_PreATP-grasp-like,superfamily_SSF51569,superfamily_SSF56059,superfamily_SSF89000	-	no_errors
PCDHB7	56129	genome.wustl.edu	37	5	140552846	140552846	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	5	140552846	140552846	G	C	SNP	PCDHB7	NM_018940.2	human	genbank	58_37c	+1	reviewed	missense	c.430	p.E144Q	0.999	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PLA1A	51365	genome.wustl.edu	37	3	119327774	119327774	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	3	119327774	119327774	C	T	SNP	PLA1A	NM_015900.2	human	genbank	58_37c	+1	validated	missense	c.433	p.L145F	0.002	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases	PatternScan_LIPASE_SER,HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases	-	no_errors
RAB13	5872	genome.wustl.edu	37	1	153954902	153954902	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	153954902	153954902	G	A	SNP	RAB13	NM_002870.2	human	genbank	58_37c	-1	provisional	missense	c.499	p.R167W	1.000	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RABL2A	11159	genome.wustl.edu	37	2	114392640	114392640	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	114392640	114392640	C	T	SNP	RABL2A	NM_007082.3	human	genbank	58_37c	+1	reviewed	missense	c.230	p.T77M	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SEC24C	9632	genome.wustl.edu	37	10	75528883	75528883	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	75528883	75528883	C	T	SNP	SEC24C	NM_004922.2	human	genbank	58_37c	+1	reviewed	silent	c.2397	p.L799	0.989	HMMPfam_Sec23_BS,superfamily_beta-sandwich domain of Sec23/24	HMMPfam_zf-Sec23_Sec24,superfamily_Zn-finger domain of Sec23/24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,PatternScan_GLYCOSYL_HYDROL_F1_1,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24,superfamily_C-terminal gelsolin-like domain of Sec23/24	-	no_errors
SEC24C	9632	genome.wustl.edu	37	10	75530080	75530080	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	75530080	75530080	C	T	SNP	SEC24C	NM_004922.2	human	genbank	58_37c	+1	reviewed	nonsense	c.2905	p.R969*	1.000	HMMPfam_Gelsolin,superfamily_C-terminal gelsolin-like domain of Sec23/24	HMMPfam_zf-Sec23_Sec24,superfamily_Zn-finger domain of Sec23/24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,PatternScan_GLYCOSYL_HYDROL_F1_1,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24,superfamily_C-terminal gelsolin-like domain of Sec23/24	-	no_errors
SEC24C	9632	genome.wustl.edu	37	10	75530798	75530798	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	75530798	75530798	C	T	SNP	SEC24C	NM_004922.2	human	genbank	58_37c	+1	reviewed	missense	c.3230	p.S1077F	1.000	superfamily_C-terminal gelsolin-like domain of Sec23/24	HMMPfam_zf-Sec23_Sec24,superfamily_Zn-finger domain of Sec23/24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,PatternScan_GLYCOSYL_HYDROL_F1_1,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24,superfamily_C-terminal gelsolin-like domain of Sec23/24	-	no_errors
SLC30A10	55532	genome.wustl.edu	37	1	220089147	220089147	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	220089147	220089147	C	G	SNP	SLC30A10	NM_018713.2	human	genbank	58_37c	-1	validated	missense	c.1102	p.E368Q	1.000	HMMPfam_Cation_efflux	HMMPfam_Cation_efflux	-	no_errors
SLC38A3	10991	genome.wustl.edu	37	3	50252845	50252845	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	3	50252845	50252845	C	T	SNP	SLC38A3	NM_006841.4	human	genbank	58_37c	+1	validated	silent	c.327	p.L109	0.910	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
SPATA13	221178	genome.wustl.edu	37	13	24798398	24798398	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	13	24798398	24798398	C	G	SNP	SPATA13	ENST00000360220	human	ensembl	58_37c	+1	known	missense	c.1331	p.S444C	0.008	NULL	NULL	-	no_errors
SRCAP	10847	genome.wustl.edu	37	16	30732773	30732773	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	16	30732773	30732773	C	T	SNP	SRCAP	NM_006662.2	human	genbank	58_37c	+1	validated	missense	c.3517	p.P1173S	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,HMMPfam_AT_hook,HMMSmart_SM00384,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ST6GALNAC2	10610	genome.wustl.edu	37	17	74566725	74566725	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	17	74566725	74566725	G	A	SNP	ST6GALNAC2	NM_006456.2	human	genbank	58_37c	-1	validated	missense	c.695	p.S232L	0.410	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
SUN5	0	genome.wustl.edu	37	20	31573550	31573550	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	20	31573550	31573550	C	A	SNP	SUN5	NM_080675.3	human	genbank	58_37c	-1	validated	missense	c.889	p.V297F	0.997	HMMPfam_Sad1_UNC	HMMPfam_Sad1_UNC	-	no_errors
SYNE2	23224	genome.wustl.edu	37	14	64540727	64540727	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	14	64540727	64540727	C	A	SNP	SYNE2	NM_182914.2	human	genbank	58_37c	+1	reviewed	missense	c.10739	p.T3580N	0.546	NULL	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin	-	no_errors
TMC7	79905	genome.wustl.edu	37	16	19020581	19020581	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	16	19020581	19020581	G	A	SNP	TMC7	NM_024847.3	human	genbank	58_37c	+1	validated	missense	c.155	p.R52K	0.566	NULL	HMMPfam_TMC	-	no_errors
TMEM155	132332	genome.wustl.edu	37	4	122682720	122682720	+	Missense_Mutation	SNP	C	C	T	rs138330999	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	4	122682720	122682720	C	T	SNP	TMEM155	NM_152399.2	human	genbank	58_37c	-1	validated	missense	c.185	p.R62H	0.992	NULL	NULL	-	no_errors
TMEM191A	84222	genome.wustl.edu	37	22	21055496	21055496	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	22	21055496	21055496	G	A	SNP	TMEM191A	NR_026815.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.176	-	-	-	no_errors
TNKS	8658	genome.wustl.edu	37	8	9619112	9619112	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	8	9619112	9619112	C	A	SNP	TNKS	NM_003747.2	human	genbank	58_37c	+1	validated	silent	c.3240	p.I1080	1.000	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,HMMPfam_PARP,superfamily_ADP-ribosylation	-	no_errors
TRIM45	80263	genome.wustl.edu	37	1	117663630	117663630	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	117663630	117663630	C	G	SNP	TRIM45	NM_025188.3	human	genbank	58_37c	-1	reviewed	missense	c.194	p.R65P	0.999	HMMSmart_SM00184,superfamily_RING/U-box	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00557,HMMSmart_SM00184,HMMSmart_SM00502,superfamily_E set domains,HMMPfam_Filamin,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
TRIO	7204	genome.wustl.edu	37	5	14472760	14472760	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	5	14472760	14472760	T	C	SNP	TRIO	NM_007118.2	human	genbank	58_37c	+1	validated	missense	c.5972	p.V1991A	1.000	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMSmart_SM00516,superfamily_CRAL/TRIO domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_Pkinase,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179600355	179600355	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	179600355	179600355	C	A	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.11086	p.D3696Y	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
UBE3A	7337	genome.wustl.edu	37	15	25616325	25616325	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	15	25616325	25616325	C	G	SNP	UBE3A	NM_000462.2	human	genbank	58_37c	-1	reviewed	missense	c.1005	p.Q335H	1.000	NULL	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	-	no_errors
WDFY1	57590	genome.wustl.edu	37	2	224782704	224782704	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	224782704	224782704	C	T	SNP	WDFY1	NM_020830.3	human	genbank	58_37c	-1	reviewed	missense	c.161	p.R54K	1.000	superfamily_WD40 repeat-like	HMMPfam_FYVE,HMMSmart_SM00064,HMMSmart_SM00320,superfamily_FYVE/PHD zinc finger,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
WEE1	7465	genome.wustl.edu	37	11	9598152	9598152	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	11	9598152	9598152	G	A	SNP	WEE1	NM_003390.3	human	genbank	58_37c	+1	reviewed	missense	c.965	p.G322E	1.000	superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
WNT2	7472	genome.wustl.edu	37	7	116955280	116955280	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	7	116955280	116955280	C	T	SNP	WNT2	NM_003391.2	human	genbank	58_37c	-1	reviewed	missense	c.433	p.A145T	0.064	HMMPfam_wnt,HMMSmart_SM00097	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors
XBP1	7494	genome.wustl.edu	37	22	29191587	29191588	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	22	29191587	29191588	-	G	INS	XBP1	NM_001079539.1	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.707_706	p.L236fs	1.000:1.000	NULL	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors
ZNF131	7690	genome.wustl.edu	37	5	43175004	43175004	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	5	43175004	43175004	G	A	SNP	ZNF131	NM_003432.1	human	genbank	58_37c	+1	validated	silent	c.1539	p.R513	1.000	NULL	HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF660	285349	genome.wustl.edu	37	3	44636310	44636310	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	3	44636310	44636310	C	T	SNP	ZNF660	NM_173658.1	human	genbank	58_37c	+1	provisional	nonsense	c.625	p.Q209*	0.120	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
