Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AHCTF1	25909	genome.wustl.edu	37	1	247063726	247063726	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	1	247063726	247063726	T	G	SNP	AHCTF1	NM_015446.4	human	genbank	58_37c	-1	validated	missense	c.1163	p.N388T	1.000	NULL	PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
ARF1	375	genome.wustl.edu	37	1	228285614	228285614	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	1	228285614	228285614	G	A	SNP	ARF1	NM_001024226.1	human	genbank	58_37c	+1	reviewed	missense	c.446	p.R149H	1.000	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,PatternScan_ARF,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ARHGAP28	79822	genome.wustl.edu	37	18	6837323	6837323	+	Silent	SNP	G	G	A	rs189356809	by1000genomes	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	18	6837323	6837323	G	A	SNP	ARHGAP28	ENST00000400091	human	ensembl	58_37c	+1	known	silent	c.453	p.K151	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP	-	no_errors
C11orf60	56912	genome.wustl.edu	37	11	118425295	118425295	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	11	118425295	118425295	C	T	SNP	IFT46	NM_020153.3	human	genbank	58_37c	-1	validated	missense	c.515	p.R172H	1.000	NULL	NULL	-	no_errors
C13orf23	80209	genome.wustl.edu	37	13	39587543	39587543	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	13	39587543	39587543	G	A	SNP	C13orf23	NM_025138.3	human	genbank	58_37c	-1	validated	missense	c.1846	p.P616S	1.000	NULL	NULL	-	no_errors
C4BPA	722	genome.wustl.edu	37	1	207288784	207288784	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	1	207288784	207288784	G	C	SNP	C4BPA	NM_000715.3	human	genbank	58_37c	+1	reviewed	missense	c.352	p.E118Q	0.997	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	-	no_errors
CALHM2	51063	genome.wustl.edu	37	10	105207117	105207117	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	10	105207117	105207117	G	A	SNP	CALHM2	NM_015916.4	human	genbank	58_37c	-1	validated	missense	c.764	p.A255V	0.983	NULL	NULL	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68849608	68849608	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	16	68849608	68849608	A	-	DEL	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1511	p.I505fs	0.096	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
DLL4	54567	genome.wustl.edu	37	15	41227207	41227207	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	15	41227207	41227207	C	T	SNP	DLL4	NM_019074.2	human	genbank	58_37c	+1	reviewed	missense	c.1132	p.R378W	0.932	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196	PatternScan_ASX_HYDROXYL,HMMPfam_DSL,HMMSmart_DSL,HMMSmart_EGF_CA,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_MNNL,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF57196	-	no_errors
ENG	2022	genome.wustl.edu	37	9	130580642	130580642	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	9	130580642	130580642	T	C	SNP	ENG	NM_001114753.1	human	genbank	58_37c	-1	reviewed	silent	c.1443	p.P481	0.018	HMMPfam_Zona_pellucida	HMMPfam_Zona_pellucida	-	no_errors
ENSG00000246890	0	genome.wustl.edu	37	19	53155523	53155523	+	RNA	SNP	T	T	G	rs681090	byCluster;byFrequency;by2Hit2Allele;by1000genomes;byHapmap	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	19	53155523	53155523	T	G	SNP	ZNF83	NR_003936.1	human	genbank	58_37c	-1	validated	intronic	c.NULL	NULL	0.007	-	-	-	no_errors
ETV1	2115	genome.wustl.edu	37	7	13940377	13940377	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	7	13940377	13940377	C	T	SNP	ETV1	NM_004956.4	human	genbank	58_37c	-1	validated	missense	c.1198	p.G400R	1.000	"HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,HMMPfam_ETS_PEA3_N,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
GIN1	54826	genome.wustl.edu	37	5	102432415	102432415	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	5	102432415	102432415	T	A	SNP	GIN1	ENST00000274384	human	ensembl	58_37c	-1	known	splice_site	c.1122+2	e6+2	1.000	-	-	-	no_errors
GPSM1	26086	genome.wustl.edu	37	9	139229081	139229081	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	9	139229081	139229081	C	T	SNP	GPSM1	NM_001145638.1	human	genbank	58_37c	+1	validated	silent	c.246	p.H82	0.998	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	HMMPfam_TPR_1,HMMPfam_GoLoco,HMMSmart_SM00390,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
HIVEP1	3096	genome.wustl.edu	37	6	12163882	12163882	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	6	12163882	12163882	T	C	SNP	HIVEP1	NM_002114.2	human	genbank	58_37c	+1	validated	missense	c.7345	p.S2449P	0.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
KRAS	3845	genome.wustl.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	12	25398285	25398285	C	A	SNP	KRAS	NM_033360.2	human	genbank	58_37c	-1	reviewed	missense	c.34	p.G12C	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MOGS	7841	genome.wustl.edu	37	2	74689879	74689879	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	2	74689879	74689879	T	C	SNP	MOGS	NM_006302.2	human	genbank	58_37c	-1	reviewed	missense	c.1037	p.N346S	0.001	HMMPfam_Glyco_hydro_63	HMMPfam_Glyco_hydro_63,superfamily_Six-hairpin glycosidases	-	no_errors
MTERFD3	80298	genome.wustl.edu	37	12	107372349	107372349	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	12	107372349	107372349	T	C	SNP	MTERFD3	NM_001033050.1	human	genbank	58_37c	-1	validated	silent	c.144	p.T48	0.503	NULL	HMMPfam_mTERF,HMMSmart_Mterf	-	no_errors
MYBPHL	343263	genome.wustl.edu	37	1	109838960	109838960	+	Nonsense_Mutation	SNP	G	G	A	rs139849511	byFrequency	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	1	109838960	109838960	G	A	SNP	MYBPHL	NM_001010985.2	human	genbank	58_37c	-1	validated	nonsense	c.763	p.R255*	0.647	superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RPGRIP1L	23322	genome.wustl.edu	37	16	53691373	53691373	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	16	53691373	53691373	C	G	SNP	RPGRIP1L	NM_015272.2	human	genbank	58_37c	-1	reviewed	missense	c.1573	p.D525H	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
SORBS1	10580	genome.wustl.edu	37	10	97174350	97174350	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	10	97174350	97174350	C	A	SNP	SORBS1	NM_001034954.1	human	genbank	58_37c	-1	validated	silent	c.711	p.T237	0.001	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Sorb,HMMSmart_SM00459	-	no_errors
TAF1	6872	genome.wustl.edu	37	X	70602701	70602701	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	X	70602701	70602701	G	A	SNP	TAF1	NM_004606.3	human	genbank	58_37c	+1	reviewed	missense	c.1816	p.G606R	1.000	NULL	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_TBP-binding,superfamily_TAF_II_230,PatternScan_BROMODOMAIN_1	-	no_errors
TNRC6A	27327	genome.wustl.edu	37	16	24833445	24833445	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	16	24833445	24833445	G	A	SNP	TNRC6A	NM_014494.2	human	genbank	58_37c	+1	reviewed	missense	c.5350	p.V1784I	1.000	superfamily_RNA-binding domain RBD	PatternScan_TUBULIN_B_AUTOREG,HMMPfam_Ago_hook,superfamily_RNA-binding domain RBD	-	no_errors
TOR1A	1861	genome.wustl.edu	37	9	132576329	132576329	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	9	132576329	132576329	G	T	SNP	TOR1A	NM_000113.2	human	genbank	58_37c	-1	reviewed	missense	c.921	p.F307L	1.000	HMMPfam_Torsin,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Torsin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TSPAN2	10100	genome.wustl.edu	37	1	115615557	115615557	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A1AL-01A-21D-A12Q-09	TCGA-AR-A1AL-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8495c66e-dc95-4eae-909b-b51b8bc84889	c3cd25a8-9372-4861-91a1-bace1cdc7b54	1	115615557	115615557	T	C	SNP	TSPAN2	NM_005725.4	human	genbank	58_37c	-1	reviewed	silent	c.141	p.S47	0.984	HMMPfam_Tetraspannin	superfamily_Tetraspanin,HMMPfam_Tetraspannin,PatternScan_TM4_1	-	no_errors
