Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
C14orf102	55051	genome.wustl.edu	37	14	90754814	90754814	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	14	90754814	90754814	G	A	SNP	C14orf102	NM_017970.2	human	genbank	58_37c	-1	validated	silent	c.2905	p.L969	1.000	NULL	HMMPfam_DUF1740,superfamily_Prenyl_trans	-	no_errors
CEP170	9859	genome.wustl.edu	37	1	243349521	243349521	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	1	243349521	243349521	C	G	SNP	CEP170	ENST00000321628	human	ensembl	58_37c	-1	known	missense	c.1216	p.D406H	1.000	NULL	HMMPfam_FHA,superfamily_SMAD/FHA domain	-	no_errors
COL29A1	256076	genome.wustl.edu	37	3	130150403	130150403	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	3	130150403	130150403	C	G	SNP	COL6A5	NM_153264.5	human	genbank	58_37c	+1	validated	missense	c.5343	p.I1781M	0.907	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Collagen,superfamily_SSF53300	-	no_errors
CYP1A1	1543	genome.wustl.edu	37	15	75015349	75015349	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	15	75015349	75015349	T	C	SNP	CYP1A1	NM_000499.3	human	genbank	58_37c	-1	reviewed	silent	c.90	p.R30	0.000	NULL	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
ENSG00000214896	0	genome.wustl.edu	37	15	53178012	53178012	+	Missense_Mutation	SNP	T	C	C	rs2414185	byCluster;byFrequency;by2Hit2Allele;by1000genomes;byHapmap	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	15	53178012	53178012	T	C	SNP	ENSG00000214896	ENST00000399198	human	ensembl	58_37c	+1	known	3_prime_untranslated_region	c.*53178012	NULL	1.000	-	-	-	no_coding_region:pseudogene
ENSG00000229429	0	genome.wustl.edu	37	7	99808811	99808811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	7	99808811	99808811	G	A	SNP	ENSG00000229429	ENST00000448005	human	ensembl	58_37c	-1	known	missense	c.133	p.H45Y	0.948	NULL	NULL	-	no_errors
ENSG00000247765	0	genome.wustl.edu	37	15	21941688	21941688	+	RNA	SNP	G	G	A	rs4984119	byCluster;byFrequency;by2Hit2Allele	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	15	21941688	21941688	G	A	SNP	ENSG00000247765	ENST00000500487	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
ERP29	10961	genome.wustl.edu	37	12	112460210	112460210	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	12	112460210	112460210	C	G	SNP	ERP29	NM_006817.3	human	genbank	58_37c	+1	reviewed	silent	c.540	p.L180	0.886	HMMPfam_ERp29,superfamily_ERP29_C	PatternScan_ER_TARGET,HMMPfam_ERp29,superfamily_ERP29_C,superfamily_Thiordxn-like_fd,HMMPfam_ERp29_N	-	no_errors
GRIN2D	2906	genome.wustl.edu	37	19	48945508	48945508	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	19	48945508	48945508	G	A	SNP	GRIN2D	NM_000836.2	human	genbank	58_37c	+1	reviewed	missense	c.2542	p.V848I	1.000	HMMPfam_Lig_chan	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
LOC84931	84931	genome.wustl.edu	37	2	121222351	121222351	+	RNA	SNP	G	G	A	rs148919086	byCluster;by1000genomes	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	2	121222351	121222351	G	A	SNP	LOC84931	NR_027181.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
RPGR	6103	genome.wustl.edu	37	X	38145632	38145646	+	In_Frame_Del	DEL	CTTCCTCCCCTTCTT	CTTCCTCCCCTTCTT	-	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	CTTCCTCCCCTTCTT	CTTCCTCCCCTTCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	X	38145632	38145646	CTTCCTCCCCTTCTT	-	DEL	RPGR	NM_001034853.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.2620_2606	p.EEGEE869in_frame_del	0.002:0.000:0.000:0.001:0.001:0.002:0.004:0.002:0.000:0.001:0.005:0.072:0.086:0.106:0.097	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_RCC1/BLIP-II	-	no_errors
SH2D3A	10045	genome.wustl.edu	37	19	6754155	6754155	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	19	6754155	6754155	G	A	SNP	SH2D3A	NM_005490.2	human	genbank	58_37c	-1	validated	missense	c.1292	p.T431M	1.000	HMMSmart_SM00147,superfamily_Ras GEF	HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00147,superfamily_Ras GEF,superfamily_SH2 domain	-	no_errors
SLC24A1	9187	genome.wustl.edu	37	15	65918127	65918127	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	15	65918127	65918127	T	G	SNP	SLC24A1	NM_004727.2	human	genbank	58_37c	+1	validated	missense	c.1709	p.I570R	0.998	HMMPfam_Na_Ca_ex	HMMPfam_Na_Ca_ex	-	no_errors
