Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC3	0	genome.wustl.edu	37	17	48750941	48750941	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	17	48750941	48750941	C	A	SNP	ABCC3	NM_003786.3	human	genbank	58_37c	+1	reviewed	missense	c.2521	p.R841S	0.882	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ADAM23	0	genome.wustl.edu	37	2	207435499	207435499	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	207435499	207435499	G	T	SNP	ADAM23	NM_003812.2	human	genbank	58_37c	+1	reviewed	silent	c.1530	p.V510	0.999	NULL	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_1,HMMPfam_EGF_2,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADAMTSL1	0	genome.wustl.edu	37	9	18888027	18888027	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	9	18888027	18888027	C	A	SNP	ADAMTSL1	NM_001040272.4	human	genbank	58_37c	+1	validated	missense	c.4448	p.S1483Y	0.025	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
AMBRA1	0	genome.wustl.edu	37	11	46564000	46564000	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	11	46564000	46564000	C	A	SNP	AMBRA1	NM_017749.2	human	genbank	58_37c	-1	validated	nonsense	c.1297	p.E433*	0.617	NULL	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
AOAH	0	genome.wustl.edu	37	7	36552787	36552788	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	7	36552787	36552788	-	G	INS	AOAH	ENST00000431169	human	ensembl	58_37c	-1	known	frame_shift_ins	c.1918_1917	p.Y639fs	0.000:0.000	NULL	HMMPfam_Lipase_GDSL,HMMPfam_SapB_2,HMMSmart_SM00741,superfamily_Saposin,PatternScan_EGF_1	-	no_errors
ATM	0	genome.wustl.edu	37	11	108196269	108196269	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	11	108196269	108196269	C	T	SNP	ATM	NM_000051.3	human	genbank	58_37c	+1	reviewed	nonsense	c.6805	p.Q2269*	1.000	HMMPfam_FAT,superfamily_ARM repeat	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
C10orf79	0	genome.wustl.edu	37	10	105948072	105948072	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	10	105948072	105948072	C	A	SNP	C10orf79	NM_025145.5	human	genbank	58_37c	-1	provisional	missense	c.1643	p.R548I	0.871	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like	-	no_errors
CACNA1E	0	genome.wustl.edu	37	1	181767626	181767626	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	181767626	181767626	C	A	SNP	CACNA1E	NM_000721.2	human	genbank	58_37c	+1	reviewed	missense	c.6469	p.L2157M	0.964	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CCDC88C	0	genome.wustl.edu	37	14	91779543	91779543	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	14	91779543	91779543	C	T	SNP	CCDC88C	NM_001080414.2	human	genbank	58_37c	-1	validated	missense	c.2617	p.D873N	1.000	NULL	superfamily_Prefoldin	-	no_errors
CEP192	0	genome.wustl.edu	37	18	13056429	13056429	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	18	13056429	13056429	C	G	SNP	CEP192	NM_032142.3	human	genbank	58_37c	+1	validated	missense	c.2052	p.C684W	0.598	NULL	NULL	-	no_errors
CNNM4	0	genome.wustl.edu	37	2	97427918	97427918	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	97427918	97427918	C	A	SNP	CNNM4	NM_020184.3	human	genbank	58_37c	+1	reviewed	missense	c.1182	p.F394L	1.000	HMMPfam_CBS	HMMSmart_cNMP,HMMPfam_CBS,HMMPfam_DUF21	-	no_errors
CNTLN	0	genome.wustl.edu	37	9	17416099	17416099	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	9	17416099	17416099	T	G	SNP	CNTLN	NM_017738.2	human	genbank	58_37c	+1	validated	missense	c.3026	p.V1009G	0.877	NULL	superfamily_Prefoldin	-	no_errors
CPNE4	0	genome.wustl.edu	37	3	131293958	131293958	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	131293958	131293958	G	T	SNP	CPNE4	NM_130808.1	human	genbank	58_37c	-1	reviewed	missense	c.884	p.S295Y	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00327,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_Copine,PatternScan_CYTOCHROME_P450,superfamily_vWA-like	-	no_errors
CSMD3	0	genome.wustl.edu	37	8	113988070	113988070	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	8	113988070	113988070	A	G	SNP	CSMD3	NM_198123.1	human	genbank	58_37c	-1	validated	silent	c.1338	p.H446	1.000	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
DPH2	0	genome.wustl.edu	37	1	44436697	44436697	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	44436697	44436697	G	A	SNP	DPH2	NM_001384.4	human	genbank	58_37c	+1	reviewed	missense	c.320	p.G107D	1.000	HMMPfam_Diphthamide_syn	HMMPfam_Diphthamide_syn	-	no_errors
ENSG00000229113	0	genome.wustl.edu	37	19	42028215	42028215	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	19	42028215	42028215	A	G	SNP	ENSG00000229113	ENST00000439847	human	ensembl	58_37c	-1	known	missense	c.137	p.M46T	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
ENSG00000233525	0	genome.wustl.edu	37	16	64294878	64294878	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	16	64294878	64294878	G	T	SNP	ENSG00000233525	ENST00000428919	human	ensembl	58_37c	-1	known	missense	c.143	p.S48Y	0.353	HMMPfam_EBP	HMMPfam_EBP	-	no_start_codon
FAM20B	0	genome.wustl.edu	37	1	179019422	179019422	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	179019422	179019422	G	A	SNP	FAM20B	NM_014864.3	human	genbank	58_37c	+1	validated	missense	c.386	p.R129Q	1.000	NULL	HMMPfam_DUF1193	-	no_errors
FAM90A1	0	genome.wustl.edu	37	12	8374781	8374782	+	In_Frame_Ins	INS	-	-	ACG	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	12	8374781	8374782	-	ACG	INS	FAM90A1	NM_018088.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.1032_1031	p.345in_frame_insV	0.003:0.001	NULL	NULL	-	no_errors
FAT1	0	genome.wustl.edu	37	4	187540311	187540311	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	187540311	187540311	G	T	SNP	FAT1	NM_005245.3	human	genbank	58_37c	-1	reviewed	missense	c.7429	p.Q2477K	0.998	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FAT4	0	genome.wustl.edu	37	4	126336183	126336183	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	126336183	126336183	A	C	SNP	FAT4	NM_024582.4	human	genbank	58_37c	+1	validated	missense	c.6065	p.D2022A	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FILIP1L	0	genome.wustl.edu	37	3	99648853	99648871	+	Frame_Shift_Del	DEL	GCCTATGACCTCATCTCGA	GCCTATGACCTCATCTCGA	-	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	GCCTATGACCTCATCTCGA	GCCTATGACCTCATCTCGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	99648853	99648871	GCCTATGACCTCATCTCGA	-	DEL	FILIP1L	NM_182909.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.273_255	p.R86fs	0.979:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_CortBP2	superfamily_Prefoldin,HMMPfam_CortBP2	-	no_errors
GREM2	0	genome.wustl.edu	37	1	240656696	240656696	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	240656696	240656696	G	A	SNP	GREM2	NM_022469.3	human	genbank	58_37c	-1	reviewed	missense	c.80	p.A27V	0.971	NULL	HMMPfam_DAN,HMMSmart_CT	-	no_errors
GTF2A1	0	genome.wustl.edu	37	14	81658982	81658982	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	14	81658982	81658982	G	T	SNP	GTF2A1	NM_015859.2	human	genbank	58_37c	-1	validated	missense	c.814	p.Q272K	1.000	HMMPfam_TFIIA	HMMPfam_TFIIA,superfamily_Transcription factor IIA (TFIIA) alpha-helical domain,superfamily_Transcription factor IIA (TFIIA) beta-barrel domain	-	no_errors
HHLA1	0	genome.wustl.edu	37	8	133101771	133101771	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	8	133101771	133101771	A	G	SNP	HHLA1	NM_001145095.1	human	genbank	58_37c	-1	provisional	missense	c.524	p.I175T	1.000	NULL	NULL	-	no_errors
HLA-B	0	genome.wustl.edu	37	6	31324601	31324602	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	6	31324601	31324602	-	G	INS	HLA-B	NM_005514.6	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.207_206	p.E69fs	0.090:0.000	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,HMMPfam_MHC_I_C,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
HMCN1	0	genome.wustl.edu	37	1	186050516	186050516	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	186050516	186050516	G	A	SNP	HMCN1	NM_031935.2	human	genbank	58_37c	+1	reviewed	missense	c.8777	p.R2926Q	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	PatternScan_ASX_HYDROXYL,PatternScan_CECROPIN,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00179,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_I-set,HMMPfam_ig,PatternScan_EGF_CA,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
HTR1F	0	genome.wustl.edu	37	3	88039993	88039993	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	88039993	88039993	G	A	SNP	HTR1F	NM_000866.3	human	genbank	58_37c	+1	validated	missense	c.94	p.G32R	0.001	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
IL17B	0	genome.wustl.edu	37	5	148756493	148756493	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	5	148756493	148756493	G	A	SNP	IL17B	NM_014443.2	human	genbank	58_37c	-1	reviewed	silent	c.117	p.A39	0.734	HMMPfam_IL17	HMMPfam_IL17,superfamily_SSF57501	-	no_errors
KIAA1210	0	genome.wustl.edu	37	X	118221586	118221586	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	X	118221586	118221586	G	T	SNP	KIAA1210	NM_020721.1	human	genbank	58_37c	-1	validated	missense	c.3607	p.Q1203K	0.007	NULL	NULL	-	no_errors
KIF5C	0	genome.wustl.edu	37	2	149798136	149798136	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	149798136	149798136	G	A	SNP	KIF5C	ENST00000435030	human	ensembl	58_37c	+1	known	missense	c.409	p.E137K	1.000	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC100287759	0	genome.wustl.edu	37	9	66454940	66454940	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	9	66454940	66454940	G	C	SNP	LOC100287759	XM_002342919.1	human	genbank	58_37c	-1	model	missense	c.15	p.H5Q	0.134	NULL	NULL	-	no_errors
LOC388996	0	genome.wustl.edu	37	2	91800569	91800569	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	91800569	91800569	C	T	SNP	LOC388996	XR_017571.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC642413	0	genome.wustl.edu	37	10	81630754	81630754	+	RNA	SNP	A	A	C	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	10	81630754	81630754	A	C	SNP	LOC642413	XR_016155.3	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC645944	0	genome.wustl.edu	37	5	178510272	178510273	+	RNA	DEL	AT	AT	-	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	5	178510272	178510273	AT	-	DEL	LOC645944	XR_017227.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.026:0.021	-	-	-	pseudogene
MIR519A1	0	genome.wustl.edu	37	19	54255733	54255733	+	RNA	SNP	G	G	C	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	19	54255733	54255733	G	C	SNP	MIR519A1	ENST00000385257	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.041	-	-	-	no_errors
MLL2	0	genome.wustl.edu	37	12	49427620	49427622	+	In_Frame_Del	DEL	TGG	TGG	-	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	12	49427620	49427622	TGG	-	DEL	MLL2	NM_003482.3	human	genbank	58_37c	-1	validated	in_frame_del	c.10868_10866	p.Q3623in_frame_del	1.000:1.000:0.994	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,PatternScan_RECOMBINASES_2,superfamily_HMG-box,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
MT-CO2	0	genome.wustl.edu	37	MT	7976	7976	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	MT	7976	7976	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	58_37c	+1	known	missense	c.391	p.G131S	NULL	HMMPfam_COX2,superfamily_Cupredoxins	PatternScan_COX2,HMMPfam_COX2,superfamily_Cupredoxins,HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region	-	mismatch_between_exon_seq_and_reference
MUC12	0	genome.wustl.edu	37	7	100637141	100637141	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	7	100637141	100637141	G	A	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	silent	c.3726	p.E1242	0.001	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MUC21	0	genome.wustl.edu	37	6	30954618	30954618	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	6	30954618	30954618	T	C	SNP	MUC21	NM_001010909.2	human	genbank	58_37c	+1	validated	silent	c.666	p.A222	0.000	NULL	NULL	-	no_errors
NCR1	0	genome.wustl.edu	37	19	55420747	55420747	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	19	55420747	55420747	G	A	SNP	NCR1	NM_004829.5	human	genbank	58_37c	+1	validated	missense	c.499	p.G167R	0.000	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00409,superfamily_Immunoglobulin	-	no_errors
NDUFAF1	0	genome.wustl.edu	37	15	41687079	41687079	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	15	41687079	41687079	C	T	SNP	NDUFAF1	NM_016013.2	human	genbank	58_37c	-1	validated	missense	c.737	p.G246E	1.000	HMMPfam_CIA30	HMMPfam_CIA30	-	no_errors
OR4Q3	0	genome.wustl.edu	37	14	20216051	20216051	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	14	20216051	20216051	C	A	SNP	OR4Q3	NM_172194.1	human	genbank	58_37c	+1	provisional	silent	c.465	p.I155	0.001	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCDHB2	0	genome.wustl.edu	37	5	140476000	140476000	+	Silent	SNP	G	G	T	rs141231979	byFrequency	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	5	140476000	140476000	G	T	SNP	PCDHB2	NM_018936.2	human	genbank	58_37c	+1	reviewed	silent	c.1626	p.A542	0.745	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PCLO	0	genome.wustl.edu	37	7	82544944	82544944	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	7	82544944	82544944	C	T	SNP	PCLO	NM_033026.5	human	genbank	58_37c	-1	validated	missense	c.12358	p.E4120K	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_zf-piccolo,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
PGR	0	genome.wustl.edu	37	11	100933223	100933223	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	11	100933223	100933223	C	T	SNP	PGR	NM_000926.4	human	genbank	58_37c	-1	reviewed	missense	c.2167	p.E723K	1.000	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain	HMMPfam_Prog_receptor,HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	rs121913284	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	178921553	178921553	T	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1035	p.N345K	1.000	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PKD1L2	0	genome.wustl.edu	37	16	81193423	81193423	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	16	81193423	81193423	C	A	SNP	PKD1L2	ENST00000360678	human	ensembl	58_37c	-1	known	splice_site	c.1422-1	e11-1	0.978	-	-	-	no_stop_codon
PKN1	0	genome.wustl.edu	37	19	14574672	14574672	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	19	14574672	14574672	A	G	SNP	PKN1	NM_213560.1	human	genbank	58_37c	+1	reviewed	missense	c.1546	p.I516V	1.000	NULL	HMMPfam_HR1,HMMSmart_SM00133,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),HMMSmart_SM00742,superfamily_HR1 repeat,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
PLCE1	0	genome.wustl.edu	37	10	95993811	95993811	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	10	95993811	95993811	G	C	SNP	PLCE1	NM_016341.3	human	genbank	58_37c	+1	reviewed	missense	c.1956	p.R652S	1.000	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RA,HMMSmart_SM00314,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand	-	no_errors
POLR1B	0	genome.wustl.edu	37	2	113325615	113325615	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	113325615	113325615	G	A	SNP	POLR1B	NM_019014.4	human	genbank	58_37c	+1	validated	silent	c.1818	p.L606	1.000	HMMPfam_RNA_pol_Rpa2_4,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	HMMPfam_RNA_pol_Rpb2_6,PatternScan_RNA_POL_BETA,HMMPfam_RNA_pol_Rpb2_7,HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_3,HMMPfam_RNA_pol_Rpb2_5,HMMPfam_RNA_pol_Rpa2_4,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	-	no_errors
PPP2R3A	0	genome.wustl.edu	37	3	135721399	135721399	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	135721399	135721399	G	A	SNP	PPP2R3A	NM_002718.3	human	genbank	58_37c	+1	reviewed	silent	c.1059	p.L353	0.008	NULL	PatternScan_EF_HAND_1,superfamily_EF-hand	-	no_errors
PRDM5	0	genome.wustl.edu	37	4	121698355	121698355	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	121698355	121698355	G	A	SNP	PRDM5	NM_018699.2	human	genbank	58_37c	-1	reviewed	missense	c.1525	p.R509W	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_SET,HMMSmart_SM00317,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
RALGAPA2	0	genome.wustl.edu	37	20	20553660	20553660	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	20	20553660	20553660	G	A	SNP	RALGAPA2	ENST00000430436	human	ensembl	58_37c	-1	known	missense	c.2210	p.S737L	0.992	NULL	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
RPGR	0	genome.wustl.edu	37	X	38145797	38145798	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	X	38145797	38145798	-	T	INS	RPGR	NM_001034853.1	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.2455_2454	p.V818fs	0.010:0.003	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_RCC1/BLIP-II	-	no_errors
SAGE1	0	genome.wustl.edu	37	X	134994548	134994548	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	X	134994548	134994548	G	A	SNP	SAGE1	NM_018666.2	human	genbank	58_37c	+1	reviewed	missense	c.2590	p.E864K	0.995	NULL	NULL	-	no_errors
SCN2A	0	genome.wustl.edu	37	2	166201270	166201270	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	166201270	166201270	G	T	SNP	SCN2A	NM_001040142.1	human	genbank	58_37c	+1	reviewed	missense	c.2768	p.W923L	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SFRS8	0	genome.wustl.edu	37	12	132241104	132241104	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	12	132241104	132241104	A	C	SNP	SFRS8	NM_004592.2	human	genbank	58_37c	+1	reviewed	silent	c.1635	p.A545	0.000	NULL	HMMPfam_Surp,HMMSmart_SM00648,HMMPfam_DRY_EERY,superfamily_Surp module (SWAP domain Pfam 01805)	-	no_errors
SLC38A4	0	genome.wustl.edu	37	12	47163175	47163175	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	12	47163175	47163175	G	A	SNP	SLC38A4	NM_001143824.1	human	genbank	58_37c	-1	validated	nonsense	c.1336	p.R446*	0.997	HMMPfam_Aa_trans	HMMPfam_Aa_trans,PatternScan_RIBOSOMAL_L30	-	no_errors
SLC4A4	0	genome.wustl.edu	37	4	72205101	72205101	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	72205101	72205101	G	A	SNP	SLC4A4	NM_001134742.1	human	genbank	58_37c	+1	reviewed	missense	c.268	p.E90K	1.000	NULL	HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_PTrfase/Anion_transptr	-	no_errors
SPATA4	0	genome.wustl.edu	37	4	177116659	177116659	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	177116659	177116659	C	G	SNP	SPATA4	NM_144644.2	human	genbank	58_37c	-1	provisional	missense	c.55	p.D19H	0.000	NULL	HMMPfam_DUF1042	-	no_errors
TACC2	0	genome.wustl.edu	37	10	123847229	123847229	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	10	123847229	123847229	T	G	SNP	TACC2	NM_206862.2	human	genbank	58_37c	+1	reviewed	silent	c.5214	p.G1738	0.005	NULL	HMMPfam_TACC	-	no_errors
TET2	0	genome.wustl.edu	37	4	106190872	106190872	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	106190872	106190872	G	C	SNP	TET2	NM_001127208.1	human	genbank	58_37c	+1	validated	missense	c.4150	p.D1384H	1.000	NULL	NULL	-	no_errors
TIGD7	0	genome.wustl.edu	37	16	3349850	3349850	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	16	3349850	3349850	A	T	SNP	TIGD7	NM_033208.2	human	genbank	58_37c	-1	validated	silent	c.765	p.V255	0.565	HMMPfam_DDE	HMMPfam_DDE,HMMSmart_SM00674,HMMPfam_CENP-B_N,superfamily_Homeodomain-like,HMMPfam_CenpB-DNA-bind	-	no_errors
TRIM33	0	genome.wustl.edu	37	1	114944055	114944055	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	114944055	114944055	A	G	SNP	TRIM33	NM_015906.3	human	genbank	58_37c	-1	reviewed	missense	c.2923	p.C975R	1.000	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00502,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_RING_1,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_RING/U-box	-	no_errors
TTPAL	0	genome.wustl.edu	37	20	43113021	43113021	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	20	43113021	43113021	G	A	SNP	TTPAL	NM_001039199.1	human	genbank	58_37c	+1	validated	missense	c.490	p.A164T	1.000	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO_N,superfamily_Sec14p_like_N	-	no_errors
TWF2	0	genome.wustl.edu	37	3	52265497	52265497	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	52265497	52265497	C	A	SNP	TWF2	NM_007284.3	human	genbank	58_37c	-1	reviewed	missense	c.341	p.G114V	0.996	HMMPfam_Cofilin_ADF,HMMSmart_ADF,superfamily_SSF55753	HMMPfam_Cofilin_ADF,HMMSmart_ADF,superfamily_SSF55753	-	no_errors
TYW1B	0	genome.wustl.edu	37	7	72286035	72286035	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	7	72286035	72286035	G	A	SNP	TYW1B	NM_001145440.1	human	genbank	58_37c	-1	reviewed	missense	c.161	p.A54V	0.831	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins	HMMPfam_Radical_SAM,HMMPfam_Flavodoxin_1,HMMPfam_Wyosine_form,superfamily_Flavoproteins	-	pseudogene
WDR66	0	genome.wustl.edu	37	12	122413496	122413496	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	12	122413496	122413496	G	C	SNP	WDR66	NM_144668.4	human	genbank	58_37c	+1	validated	missense	c.2911	p.D971H	0.835	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,superfamily_EF-hand	-	no_errors
XRN1	0	genome.wustl.edu	37	3	142090130	142090130	+	Nonsense_Mutation	SNP	C	C	A	rs140150868	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	142090130	142090130	C	A	SNP	XRN1	NM_019001.3	human	genbank	58_37c	-1	validated	nonsense	c.3019	p.E1007*	1.000	NULL	HMMPfam_XRN_N,superfamily_dsRNA-binding domain-like	-	no_errors
ZAN	0	genome.wustl.edu	37	7	100385562	100385596	+	Frame_Shift_Del	DEL	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	-	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	7	100385562	100385596	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	-	DEL	ZAN	NM_003386.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.7030_7064	p.A2344fs	0.013:0.005:0.000:0.001:0.000:0.000:0.005:0.239:0.512:0.532:0.543:0.259:0.193:0.551:0.747:0.746:0.691:0.313:0.001:0.036:0.867:0.876:0.710:0.622:0.357:0.357:0.884:0.969:0.998:1.000:1.000:1.000:1.000:0.989:0.652	NULL	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,PatternScan_EGF_2,HMMPfam_C8,HMMPfam_TIL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZC3H15	0	genome.wustl.edu	37	2	187370543	187370543	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	187370543	187370543	A	G	SNP	ZC3H15	NM_018471.2	human	genbank	58_37c	+1	validated	missense	c.941	p.Y314C	0.988	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	-	no_errors
ZNF546	0	genome.wustl.edu	37	19	40521493	40521493	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	19	40521493	40521493	G	A	SNP	ZNF546	ENST00000444043	human	ensembl	58_37c	+1	known	splice_site	c.745-2	e3-2	0.985	-	-	-	no_start_codon:no_stop_codon
