Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
ACTN2	88	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	236891015	236891015	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
ALPK1	80216	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	113360933	113360933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
ANKRD40	91369	hgsc.bcm.edu	37	17	48777220	48777221	+	In_Frame_Ins	INS	-	-	TCA	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
ARHGEF5	7984	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	144077075	144077075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
C13orf38-SOHLH2	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	36776196	36776196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
C16orf48	0	broad.mit.edu;hgsc.bcm.edu	37	16	67697841	67697841	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
C1orf104	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155290610	155290610	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
C8orf37	157657	hgsc.bcm.edu;ucsc.edu	37	8	96275957	96275962	+	In_Frame_Del	DEL	AATAAG	AATAAG	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	AATAAG	AATAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
CCDC68	80323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	52575020	52575020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
CD163	9332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7636081	7636081	+	Silent	SNP	C	C	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
CTNND2	1501	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	11346669	11346676	+	Frame_Shift_Del	DEL	GGCATTCT	GGCATTCT	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	GGCATTCT	GGCATTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
DAXX	1616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33286892	33286892	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
DSCAML1	57453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	117374716	117374716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
DSCAML1	57453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	117374717	117374717	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
ERLIN1	10613	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	101923759	101923759	+	Splice_Site	SNP	A	A	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
FAM64A	54478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	6348680	6348680	+	Missense_Mutation	SNP	G	G	A	rs151147808		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
FKBPL	63943	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	32097079	32097079	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
FZD10	11211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	130649146	130649146	+	Silent	SNP	C	C	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
GBA2	57704	hgsc.bcm.edu;ucsc.edu	37	9	35738845	35738845	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
GLG1	2734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	74530491	74530491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
GPR172A	0	hgsc.bcm.edu	37	8	145584534	145584535	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
GPRASP1	9737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	101911040	101911041	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
HMHA1	23526	broad.mit.edu;ucsc.edu	37	19	1074667	1074667	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
IQCE	23288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	2645633	2645633	+	Splice_Site	SNP	T	T	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
ITGA2	3673	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	52363017	52363017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
JAKMIP2	9832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	147040551	147040551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
KIAA0947	23379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	5464188	5464188	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
LRP2	4036	broad.mit.edu;hgsc.bcm.edu	37	2	170177379	170177379	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
LRRC36	55282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67404969	67404969	+	Silent	SNP	C	C	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
MACF1	23499	broad.mit.edu;hgsc.bcm.edu	37	1	39788664	39788664	+	Missense_Mutation	SNP	G	G	A	rs148253091	bycluster;by1000genomes	TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
MED7	9443	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	156565914	156565914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
MICB	4277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	31475252	31475252	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
MXD4	10608	broad.mit.edu;hgsc.bcm.edu	37	4	2254186	2254186	+	Silent	SNP	G	G	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
OR5K2	402135	hgsc.bcm.edu	37	3	98216592	98216592	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52662984	52662984	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
PEX26	55670	broad.mit.edu;ucsc.edu	37	22	18566233	18566233	+	Silent	SNP	T	G	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
PGC	5225	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	41712242	41712242	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
PRDM10	56980	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	129817095	129817095	+	Silent	SNP	C	C	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
PRKCE	5581	hgsc.bcm.edu	37	2	46203625	46203626	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
PRKDC	5591	hgsc.bcm.edu	37	8	48805816	48805817	+	Frame_Shift_Ins	INS	-	-	G	rs11411516	bycluster;by1000genomes	TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
PTPN1	5770	broad.mit.edu;hgsc.bcm.edu	37	20	49196426	49196426	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
RSBN1L	222194	hgsc.bcm.edu;ucsc.edu	37	7	77379172	77379172	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
SART3	9733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	108920274	108920274	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
SEC16A	9919	hgsc.bcm.edu	37	9	139370955	139370963	+	In_Frame_Del	DEL	AGCTCCTGA	AGCTCCTGA	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	AGCTCCTGA	AGCTCCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
SIPA1L3	23094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38609984	38609984	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
SMAD2	4087	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	45368211	45368211	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
SORBS3	10174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	22423910	22423910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
SPINK5	11005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	147444913	147444913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
STXBP5L	9515	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	121097679	121097679	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
TET2	54790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	106157368	106157368	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
TMEFF2	23671	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	192818523	192818523	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
TRIM36	55521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	114499350	114499350	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
TRIM39	56658	broad.mit.edu;hgsc.bcm.edu	37	6	30308093	30308093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
TTC14	151613	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	180322346	180322346	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
TTC14	151613	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	180322347	180322347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
UBAP1	51271	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	34241773	34241773	+	Silent	SNP	C	C	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188227	10188227	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
VWF	7450	broad.mit.edu;hgsc.bcm.edu	37	12	6127588	6127588	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
WBP11	51729	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	14943423	14943423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
ZC3H7A	29066	hgsc.bcm.edu;ucsc.edu	37	16	11846601	11846602	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
ZNF20	7568	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	12243969	12243969	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
ZNF320	162967	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53384724	53384724	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
ZNF432	9668	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52538204	52538204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
MLL3	58508	broad.mit.edu	37	7	151834021	151834022	+	Intron	DEL	AA	-	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	AA	AA	AA	-	AA	AA	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
PKD1	5310	broad.mit.edu	37	16	2161786	2161786	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
TSPAN19	144448	broad.mit.edu	37	12	85423550	85423550	+	Frame_Shift_Del	DEL	A	-	-	rs59822389		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	
