Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC6	368	genome.wustl.edu	37	16	16315440	16315440	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	16	16315440	16315440	G	C	SNP	ABCC6	NM_001079528.3	human	genbank	58_37c	-1	reviewed	missense	c.285	p.N95K	0.005	NULL	NULL	-	no_errors
ACSF2	80221	genome.wustl.edu	37	17	48548486	48548487	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	17	48548486	48548487	CT	-	DEL	ACSF2	NM_025149.4	human	genbank	58_37c	+1	validated	frame_shift_del	c.1313_1314	p.T440fs	0.987:0.969	HMMPfam_AMP-binding,superfamily_SSF56801	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_SSF56801	-	no_errors
ACTL6B	51412	genome.wustl.edu	37	7	100246265	100246265	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	7	100246265	100246265	C	-	DEL	ACTL6B	NM_016188.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.583	p.A195fs	1.000	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_2,superfamily_SSF53067	-	no_errors
ARHGAP5	394	genome.wustl.edu	37	14	32560757	32560757	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	14	32560757	32560757	T	A	SNP	ARHGAP5	NM_001030055.1	human	genbank	58_37c	+1	reviewed	missense	c.882	p.S294R	1.000	HMMPfam_FF,HMMSmart_SM00441	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_FF,HMMSmart_SM00441,superfamily_FF domain,superfamily_GTPase activation domain GAP,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
BMX	660	genome.wustl.edu	37	X	15568080	15568080	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	X	15568080	15568080	C	T	SNP	BMX	NM_001721.6	human	genbank	58_37c	+1	reviewed	missense	c.1913	p.S638L	0.055	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_SH2,HMMSmart_SH2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_BTK,HMMSmart_BTK,HMMPfam_PH,HMMSmart_PH,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF50729,superfamily_SSF55550	-	no_errors
C20orf26	26074	genome.wustl.edu	37	20	20269354	20269354	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	20	20269354	20269354	C	A	SNP	C20orf26	NM_015585.3	human	genbank	58_37c	+1	validated	missense	c.2898	p.N966K	0.030	superfamily_FAD/NAD(P)-binding domain	superfamily_Acyl-CoA N-acyltransferases (Nat),superfamily_FAD/NAD(P)-binding domain	-	no_errors
C4orf21	55345	genome.wustl.edu	37	4	113539671	113539671	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	4	113539671	113539671	A	T	SNP	C4orf21	ENST00000505019	human	ensembl	58_37c	-1	known	missense	c.1527	p.D509E	0.000	NULL	HMMPfam_zf-GRF,HMMPfam_DUF2439,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CACNA1E	777	genome.wustl.edu	37	1	181688931	181688931	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	1	181688931	181688931	A	C	SNP	CACNA1E	NM_000721.2	human	genbank	58_37c	+1	reviewed	missense	c.1683	p.R561S	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CD248	57124	genome.wustl.edu	37	11	66082629	66082629	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	11	66082629	66082629	G	A	SNP	CD248	NM_020404.2	human	genbank	58_37c	-1	validated	nonsense	c.1870	p.Q624*	0.405	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_C-type lectin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
CD3E	916	genome.wustl.edu	37	11	118185202	118185202	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	11	118185202	118185202	A	G	SNP	CD3E	NM_000733.3	human	genbank	58_37c	+1	reviewed	missense	c.560	p.D187G	1.000	HMMPfam_ITAM,HMMSmart_SM00077	HMMPfam_ITAM,HMMSmart_SM00077,HMMSmart_SM00408,superfamily_Immunoglobulin	-	no_errors
CELSR3	1951	genome.wustl.edu	37	3	48697354	48697354	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	3	48697354	48697354	C	T	SNP	CELSR3	NM_001407.2	human	genbank	58_37c	-1	reviewed	missense	c.2714	p.R905H	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00282,HMMPfam_HRM,HMMSmart_SM00008,HMMSmart_SM00179,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_EGF/Laminin	-	no_errors
CLASP1	23332	genome.wustl.edu	37	2	122106150	122106152	+	In_Frame_Del	DEL	CGA	CGA	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	CGA	CGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	2	122106150	122106152	CGA	-	DEL	CLASP1	NM_015282.2	human	genbank	58_37c	-1	validated	in_frame_del	c.4351_4349	p.V1450in_frame_del	1.000:0.564:0.985	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
CNBD1	168975	genome.wustl.edu	37	8	88249321	88249321	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	8	88249321	88249321	T	A	SNP	CNBD1	NM_173538.2	human	genbank	58_37c	+1	provisional	missense	c.752	p.L251Q	0.000	superfamily_cNMP_binding	HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding	-	no_errors
CNNM2	54805	genome.wustl.edu	37	10	104816543	104816543	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	10	104816543	104816543	T	C	SNP	CNNM2	ENST00000457502	human	ensembl	58_37c	+1	known	missense	c.1898	p.I633T	1.000	NULL	HMMPfam_CBS,HMMPfam_DUF21	-	no_errors
COG5	10466	genome.wustl.edu	37	7	106877126	106877126	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	7	106877126	106877126	T	A	SNP	COG5	NM_006348.3	human	genbank	58_37c	-1	validated	missense	c.1953	p.L651F	0.001	NULL	HMMPfam_COG5	-	no_errors
CSNK1E	1454	genome.wustl.edu	37	22	38694855	38694855	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	22	38694855	38694855	C	T	SNP	CSNK1E	NM_001894.4	human	genbank	58_37c	-1	reviewed	missense	c.821	p.R274H	1.000	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
DNAH17	8632	genome.wustl.edu	37	17	76490785	76490785	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	17	76490785	76490785	A	C	SNP	DNAH17	ENST00000389840	human	ensembl	58_37c	-1	known	missense	c.6118	p.F2040V	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EIF4ENIF1	56478	genome.wustl.edu	37	22	31867874	31867874	+	Silent	SNP	G	G	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	22	31867874	31867874	G	C	SNP	EIF4ENIF1	NM_019843.3	human	genbank	58_37c	-1	reviewed	silent	c.126	p.P42	0.985	HMMPfam_EIF4E-T	HMMPfam_EIF4E-T	-	no_errors
ENSG00000232429	0	genome.wustl.edu	37	19	34080511	34080511	+	Silent	SNP	G	G	C	rs12609032	byCluster;byFrequency;by1000genomes;byHapmap	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	19	34080511	34080511	G	C	SNP	ENSG00000232429	ENST00000497298	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-34080511	NULL	1.000	-	-	-	no_coding_region:pseudogene
FABP6	2172	genome.wustl.edu	37	5	159656619	159656619	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	5	159656619	159656619	A	C	SNP	FABP6	NM_001040442.1	human	genbank	58_37c	+1	reviewed	missense	c.202	p.M68L	0.999	PatternScan_FABP,HMMPfam_Lipocalin,superfamily_Calycin	PatternScan_FABP,HMMPfam_Lipocalin,superfamily_Calycin	-	no_errors
HIRA	7290	genome.wustl.edu	37	22	19349295	19349295	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	22	19349295	19349295	C	T	SNP	HIRA	NM_003325.3	human	genbank	58_37c	-1	reviewed	silent	c.1935	p.R645	0.951	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_Hira,HMMPfam_HIRA_B,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
HLTF	6596	genome.wustl.edu	37	3	148793804	148793806	+	In_Frame_Del	DEL	GTT	GTT	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	GTT	GTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	3	148793804	148793806	GTT	-	DEL	HLTF	NM_003071.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.259_257	p.Q86in_frame_del	1.000:1.000:1.000	HMMPfam_HIRAN	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00184,HMMSmart_SM00487,HMMPfam_HIRAN,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_RING/U-box	-	no_errors
IGSF5	150084	genome.wustl.edu	37	21	41137704	41137704	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	21	41137704	41137704	C	-	DEL	IGSF5	NM_001080444.1	human	genbank	58_37c	+1	provisional	frame_shift_del	c.343	p.S116fs	0.002	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726	-	no_errors
ITGA1	3672	genome.wustl.edu	37	5	52211349	52211349	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	5	52211349	52211349	A	G	SNP	ITGA1	NM_181501.1	human	genbank	58_37c	+1	reviewed	missense	c.1913	p.H638R	0.999	HMMSmart_Int_alpha,superfamily_SSF69318	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF53300,superfamily_SSF69179,superfamily_SSF69318	-	no_errors
LOC100290372	0	genome.wustl.edu	37	6	4399612	4399613	+	Missense_Mutation	DNP	TG	GC	GC	rs4959282	byCluster;byFrequency;by2Hit2Allele;by1000genomes;byHapmap	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	6	4399612	4399613	TG	GC	DNP	LOC100294212	XM_002343973.1	human	genbank	58_37c	-1	model	intronic	c.64+55_64+54	e1+55	0.030:0.030	-	-	-	pseudogene:no_stop_codon
LOC100292054	0	genome.wustl.edu	37	1	798026	798026	+	Silent	SNP	C	T	T	rs4951864	byCluster;byFrequency;by2Hit2Allele;by1000genomes;byHapmap	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	1	798026	798026	C	T	SNP	LOC100292054	XM_002345285.1	human	genbank	58_37c	+1	model	silent	c.747	p.T249	0.005	NULL	PatternScan_ZF_RING_1	-	no_start_codon:pseudogene:no_stop_codon
LOC729501	729501	genome.wustl.edu	37	13	19042402	19042402	+	Silent	SNP	C	T	T	rs145813494	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	13	19042402	19042402	C	T	SNP	LOC729501	XM_002343229.1	human	genbank	58_37c	-1	model	silent	c.1680	p.K560	0.992	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	pseudogene
MED27	9442	genome.wustl.edu	37	9	134952894	134952907	+	Frame_Shift_Del	DEL	CCAGGCTTAACAGC	CCAGGCTTAACAGC	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	CCAGGCTTAACAGC	CCAGGCTTAACAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	9	134952894	134952907	CCAGGCTTAACAGC	-	DEL	MED27	NM_004269.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.283_270	p.L91fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.984:1.000:1.000:1.000:1.000:0.983:0.129	NULL	NULL	-	no_errors
MORC2	22880	genome.wustl.edu	37	22	31336819	31336819	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	22	31336819	31336819	T	C	SNP	MORC2	NM_014941.1	human	genbank	58_37c	-1	provisional	missense	c.644	p.Y215C	1.000	superfamily_ATP_bd_ATPase	superfamily_ATP_bd_ATPase,HMMPfam_zf-CW	-	no_errors
MTR	4548	genome.wustl.edu	37	1	237023140	237023140	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	1	237023140	237023140	G	C	SNP	MTR	NM_000254.2	human	genbank	58_37c	+1	reviewed	missense	c.1961	p.G654A	0.831	NULL	HMMPfam_Pterin_bind,HMMPfam_S-methyl_trans,superfamily_Homocysteine S-methyltransferase,HMMPfam_B12-binding_2,superfamily_Methionine synthase domain,HMMPfam_Met_synt_B12,superfamily_Methionine synthase activation domain-like,HMMPfam_B12-binding,superfamily_Cobalamin (vitamin B12)-binding domain,superfamily_Dihydropteroate synthetase-like	-	no_errors
MUC17	140453	genome.wustl.edu	37	7	100686212	100686212	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	7	100686212	100686212	C	T	SNP	MUC17	NM_001040105.1	human	genbank	58_37c	+1	provisional	missense	c.11515	p.P3839S	0.029	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
PALM2	114299	genome.wustl.edu	37	9	112705127	112705127	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	9	112705127	112705127	G	A	SNP	PALM2	NM_053016.5	human	genbank	58_37c	+1	validated	missense	c.664	p.V222I	0.289	HMMPfam_Paralemmin	HMMPfam_Paralemmin	-	no_errors
PATE4	0	genome.wustl.edu	37	11	125708299	125708299	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	11	125708299	125708299	A	G	SNP	PATE4	NM_001144874.1	human	genbank	58_37c	+1	validated	missense	c.274	p.R92G	0.040	NULL	NULL	-	no_errors
PCDHA10	56139	genome.wustl.edu	37	5	140235801	140235801	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	5	140235801	140235801	G	A	SNP	PCDHA10	NM_018901.2	human	genbank	58_37c	+1	reviewed	silent	c.168	p.A56	0.000	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
POLQ	10721	genome.wustl.edu	37	3	121158894	121158894	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	3	121158894	121158894	C	A	SNP	POLQ	NM_199420.3	human	genbank	58_37c	-1	validated	missense	c.7334	p.G2445V	1.000	HMMPfam_DNA_pol_A,HMMSmart_SM00482,superfamily_DNA/RNA polymerases	HMMPfam_DNA_pol_A,HMMSmart_SM00482,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,superfamily_Ribonuclease H-like,HMMSmart_SM00487,PatternScan_DNA_POLYMERASE_A,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_DNA/RNA polymerases	-	no_errors
ROBO2	6092	genome.wustl.edu	37	3	77612343	77612343	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	3	77612343	77612343	C	T	SNP	ROBO2	NM_002942.3	human	genbank	58_37c	+1	reviewed	silent	c.1545	p.N515	1.000	NULL	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
RPGR	6103	genome.wustl.edu	37	X	38145194	38145196	+	In_Frame_Del	DEL	CCC	CCC	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	CCC	CCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	X	38145194	38145196	CCC	-	DEL	RPGR	NM_001034853.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.3058_3056	p.G1019in_frame_del	0.009:0.000:0.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_RCC1/BLIP-II	-	no_errors
SAGE1	55511	genome.wustl.edu	37	X	134986704	134986704	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	X	134986704	134986704	T	C	SNP	SAGE1	NM_018666.2	human	genbank	58_37c	+1	reviewed	silent	c.289	p.L97	0.023	NULL	NULL	-	no_errors
SILV	6490	genome.wustl.edu	37	12	56349080	56349080	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	12	56349080	56349080	C	-	DEL	SILV	NM_006928.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.1828	p.V610fs	0.972	NULL	HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain	-	no_errors
SLC25A13	10165	genome.wustl.edu	37	7	95751180	95751180	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	7	95751180	95751180	C	-	DEL	SLC25A13	NM_014251.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1721	p.G574fs	1.000	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMSmart_EFh,HMMPfam_Mito_carr,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
TACC2	10579	genome.wustl.edu	37	10	123988915	123988915	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	10	123988915	123988915	C	T	SNP	TACC2	NM_206862.2	human	genbank	58_37c	+1	reviewed	missense	c.7951	p.H2651Y	0.852	NULL	HMMPfam_TACC	-	no_errors
TEX14	56155	genome.wustl.edu	37	17	56679891	56679891	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	17	56679891	56679891	T	A	SNP	TEX14	NM_198393.2	human	genbank	58_37c	-1	reviewed	missense	c.1397	p.N466I	1.000	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_Kinase_like	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	17	7578263	7578263	G	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.586	p.R196*	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TSC22D3	1831	genome.wustl.edu	37	X	106959960	106959960	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	X	106959960	106959960	G	A	SNP	TSC22D3	NM_004089.3	human	genbank	58_37c	-1	reviewed	silent	c.82	p.L28	0.999	NULL	HMMPfam_TSC22,PatternScan_TSC22	-	no_errors
TTC4	7268	genome.wustl.edu	37	1	55188450	55188450	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	1	55188450	55188450	G	C	SNP	TTC4	NM_004623.3	human	genbank	58_37c	+1	validated	missense	c.572	p.R191T	1.000	superfamily_SSF48452	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
UNC5D	137970	genome.wustl.edu	37	8	35608151	35608151	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	8	35608151	35608151	C	A	SNP	UNC5D	NM_080872.2	human	genbank	58_37c	+1	validated	missense	c.1987	p.P663T	1.000	NULL	PatternScan_SERPIN,HMMPfam_Death,HMMSmart_SM00005,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_ZU5,HMMSmart_SM00218,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_DEATH domain,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
UTRN	7402	genome.wustl.edu	37	6	144768443	144768443	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	6	144768443	144768443	C	T	SNP	UTRN	NM_007124.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1711	p.R571*	0.999	HMMSmart_SPEC,superfamily_Spectrin	HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF47473	-	no_errors
VPS11	55823	genome.wustl.edu	37	11	118948934	118948934	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	11	118948934	118948934	A	-	DEL	VPS11	ENST00000300793	human	ensembl	58_37c	+1	known	frame_shift_del	c.1810	p.A605fs	1.000	NULL	HMMSmart_SM00184,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
ZNF781	163115	genome.wustl.edu	37	19	38160608	38160608	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	251371ac-ef46-4e11-b45e-a2aaa986a2d2	5a22cccd-1c8a-425c-bc7c-3043bf4d8d15	19	38160608	38160608	G	A	SNP	ZNF781	NM_152605.3	human	genbank	58_37c	-1	validated	nonsense	c.442	p.Q148*	0.001	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
