Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AASDH	132949	genome.wustl.edu	37	4	57216157	57216157	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	4	57216157	57216157	C	-	DEL	AASDH	NM_181806.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.1760	p.G587fs	1.000	HMMPfam_PP-binding,superfamily_ACP-like	HMMPfam_AMP-binding,HMMPfam_PQQ,HMMPfam_PP-binding,superfamily_ACP-like,superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like	-	no_errors
ABCA13	154664	genome.wustl.edu	37	7	48494768	48494768	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	7	48494768	48494768	G	T	SNP	ABCA13	NM_152701.3	human	genbank	58_37c	+1	reviewed	missense	c.12700	p.V4234F	0.708	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ARHGEF1	9138	genome.wustl.edu	37	19	42410160	42410160	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	19	42410160	42410160	C	T	SNP	ARHGEF1	NM_199002.1	human	genbank	58_37c	+1	reviewed	missense	c.2519	p.A840V	0.992	NULL	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMSmart_PH,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_SSF50729	-	no_errors
CACNA1D	776	genome.wustl.edu	37	3	53765129	53765131	+	In_Frame_Del	DEL	AAC	AAC	-	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	3	53765129	53765131	AAC	-	DEL	CACNA1D	NM_000720.2	human	genbank	58_37c	+1	validated	in_frame_del	c.2422_2424	p.N809in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_SSF81324	-	no_errors
CACNA2D2	9254	genome.wustl.edu	37	3	50413608	50413608	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	3	50413608	50413608	G	A	SNP	CACNA2D2	NM_001005505.1	human	genbank	58_37c	-1	reviewed	silent	c.1638	p.N546	1.000	HMMPfam_Cache_1	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Cache_1,HMMPfam_VWA_N,HMMPfam_VGCC_alpha2,superfamily_vWA-like	-	no_errors
CEP290	80184	genome.wustl.edu	37	12	88474172	88474172	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	12	88474172	88474172	C	T	SNP	CEP290	NM_025114.3	human	genbank	58_37c	-1	reviewed	silent	c.5013	p.Q1671	1.000	NULL	NULL	-	no_errors
CLEC18B	0	genome.wustl.edu	37	16	74451961	74451961	+	Missense_Mutation	SNP	G	G	A	rs151079980	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	16	74451961	74451961	G	A	SNP	CLEC18B	NM_001011880.2	human	genbank	58_37c	-1	validated	missense	c.452	p.T151M	0.991	HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like	HMMSmart_SM00198,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_SCP,superfamily_PR-1-like,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_errors
CSMD3	114788	genome.wustl.edu	37	8	113841931	113841931	+	Silent	SNP	T	T	G	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	8	113841931	113841931	T	G	SNP	CSMD3	NM_198123.1	human	genbank	58_37c	-1	validated	silent	c.1843	p.R615	0.991	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
FBXO18	84893	genome.wustl.edu	37	10	5937117	5937117	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	10	5937117	5937117	G	T	SNP	FBXO18	NM_032807.3	human	genbank	58_37c	+1	reviewed	missense	c.121	p.A41S	0.000	NULL	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52540,superfamily_SSF81383	-	no_errors
FCGR1C	2211	genome.wustl.edu	37	1	149375146	149375146	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	1	149375146	149375146	C	A	SNP	FCGR1C	ENST00000424256	human	ensembl	58_37c	+1	known	3_prime_untranslated_region	c.*149375146	NULL	0.012	-	-	-	no_coding_region
KCNQ2	3785	genome.wustl.edu	37	20	62038263	62038263	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	20	62038263	62038263	C	T	SNP	KCNQ2	NM_172107.2	human	genbank	58_37c	-1	reviewed	missense	c.2353	p.D785N	1.000	NULL	HMMPfam_Ion_trans,HMMPfam_KCNQ_channel,superfamily_Voltage-gated potassium channels	-	no_errors
MLLT4	4301	genome.wustl.edu	37	6	168312077	168312077	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	6	168312077	168312077	C	T	SNP	MLLT4	NM_001040001.1	human	genbank	58_37c	+1	validated	nonsense	c.1942	p.Q648*	1.000	NULL	HMMPfam_RA,HMMSmart_RA,HMMPfam_FHA,HMMSmart_FHA,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,superfamily_SMAD_FHA,HMMPfam_DIL,superfamily_SSF54236	-	no_errors
NTSR1	4923	genome.wustl.edu	37	20	61340826	61340826	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	20	61340826	61340826	G	A	SNP	NTSR1	NM_002531.2	human	genbank	58_37c	+1	reviewed	silent	c.267	p.A89	0.987	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
SH2D2A	9047	genome.wustl.edu	37	1	156784870	156784870	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	1	156784870	156784870	G	A	SNP	SH2D2A	NM_003975.3	human	genbank	58_37c	-1	reviewed	silent	c.267	p.H89	0.417	superfamily_SH2 domain	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	-	no_errors
TLR10	81793	genome.wustl.edu	37	4	38777170	38777172	+	In_Frame_Del	DEL	AAC	AAC	-	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	4	38777170	38777172	AAC	-	DEL	TLR10	NM_001017388.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.42_40	p.V14in_frame_del	0.000:0.000:0.000	NULL	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,superfamily_SSF52058	-	no_errors
USH2A	7399	genome.wustl.edu	37	1	215820992	215820992	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	1	215820992	215820992	G	A	SNP	USH2A	NM_206933.2	human	genbank	58_37c	-1	reviewed	missense	c.14663	p.T4888M	0.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
USP9X	8239	genome.wustl.edu	37	X	41025364	41025364	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	X	41025364	41025364	G	A	SNP	USP9X	NM_001039590.2	human	genbank	58_37c	+1	reviewed	missense	c.2225	p.R742Q	1.000	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
WFIKKN1	117166	genome.wustl.edu	37	16	683760	683760	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	16	683760	683760	C	T	SNP	WFIKKN1	NM_053284.2	human	genbank	58_37c	+1	reviewed	silent	c.1350	p.A450	0.000	superfamily_TIMP_like	HMMPfam_Kunitz_BPTI,HMMSmart_KU,PatternScan_BPTI_KUNITZ_1,superfamily_Prot_inh_Kunz-m,HMMSmart_KAZAL,PatternScan_KAZAL,HMMSmart_IGc2,HMMPfam_WAP,HMMSmart_WAP,superfamily_WAP,superfamily_TIMP_like,HMMPfam_Kazal_2,HMMPfam_I-set,PatternScan_4_DISULFIDE_CORE,superfamily_SSF100895,superfamily_SSF48726	-	no_errors
