Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACTR3B	57180	genome.wustl.edu	37	7	152550654	152550654	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	7	152550654	152550654	G	A	SNP	ACTR3B	NM_020445.4	human	genbank	58_37c	+1	validated	missense	c.1153	p.A385T	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,superfamily_Actin-like ATPase domain	-	no_errors
APOA5	116519	genome.wustl.edu	37	11	116660880	116660881	+	In_Frame_Ins	INS	-	-	AGG	novel	unknown	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	-	-	-	AGG	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	11	116660880	116660881	-	AGG	INS	APOA5	NM_052968.4	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.1065_1064	p.356in_frame_insL	0.726:0.838	NULL	HMMPfam_Apolipoprotein,superfamily_SSF47162	-	no_errors
CBX1	10951	genome.wustl.edu	37	17	46152423	46152423	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	17	46152423	46152423	C	T	SNP	CBX1	NM_001127228.1	human	genbank	58_37c	-1	reviewed	missense	c.358	p.E120K	1.000	HMMSmart_SM00298,HMMPfam_Chromo_shadow,superfamily_Chromo domain-like,HMMSmart_SM00300	HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,HMMPfam_Chromo_shadow,superfamily_Chromo domain-like,HMMSmart_SM00300	-	no_errors
CLCA2	9635	genome.wustl.edu	37	1	86904570	86904570	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	1	86904570	86904570	C	A	SNP	CLCA2	NM_006536.5	human	genbank	58_37c	+1	reviewed	silent	c.984	p.L328	0.788	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_CLCA_N,HMMPfam_DUF1973,superfamily_SSF53300	-	no_errors
CNTN4	152330	genome.wustl.edu	37	3	3084016	3084016	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	3	3084016	3084016	T	C	SNP	CNTN4	NM_175607.1	human	genbank	58_37c	+1	reviewed	silent	c.2421	p.S807	0.929	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
CREM	1390	genome.wustl.edu	37	10	35500300	35500300	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	10	35500300	35500300	G	T	SNP	CREM	NM_183011.1	human	genbank	58_37c	+1	reviewed	missense	c.874	p.D292Y	1.000	HMMSmart_SM00338,HMMPfam_bZIP_1	HMMPfam_pKID,HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1	-	no_errors
FREM2	341640	genome.wustl.edu	37	13	39266380	39266380	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	13	39266380	39266380	T	A	SNP	FREM2	NM_207361.4	human	genbank	58_37c	+1	reviewed	missense	c.4899	p.D1633E	0.986	NULL	HMMPfam_Calx-beta,HMMSmart_SM00237	-	no_errors
HPS4	89781	genome.wustl.edu	37	22	26860722	26860722	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	22	26860722	26860722	C	A	SNP	HPS4	NM_022081.4	human	genbank	58_37c	-1	reviewed	missense	c.874	p.A292S	0.000	NULL	NULL	-	no_errors
KRTAP5-5	439915	genome.wustl.edu	37	11	1651157	1651157	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-11A-23W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	9fb162fe-879e-454a-a2ce-f1471ecaf3f7	11	1651157	1651157	A	G	SNP	KRTAP5-5	NM_001001480.2	human	genbank	58_37c	+1	validated	silent	c.87	p.G29	0.409	NULL	PatternScan_2FE2S_FER_1,PatternScan_MOLYBDOPTERIN_PROK_1	-	no_errors
LOC100286994	0	genome.wustl.edu	37	7	36345529	36345530	+	Frame_Shift_Del	DEL	GA	GA	-	rs67976875	byCluster	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	7	36345529	36345530	GA	-	DEL	LOC100286994	XM_002342716.1	human	genbank	58_37c	+1	model	frame_shift_del	c.169_170	p.E57fs	0.015:0.024	NULL	HMMPfam_Ribosomal_L39,superfamily_Ribosomal protein L39e	-	no_errors
OR10G9	219870	genome.wustl.edu	37	11	123894588	123894588	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	11	123894588	123894588	G	A	SNP	OR10G9	NM_001001953.1	human	genbank	58_37c	+1	provisional	missense	c.869	p.R290K	1.000	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PTCHD1	139411	genome.wustl.edu	37	X	23398006	23398006	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	X	23398006	23398006	C	A	SNP	PTCHD1	NM_173495.2	human	genbank	58_37c	+1	validated	nonsense	c.650	p.S217*	1.000	HMMPfam_Patched	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
SLC35B1	10237	genome.wustl.edu	37	17	47780313	47780313	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	17	47780313	47780313	T	C	SNP	SLC35B1	NM_005827.1	human	genbank	58_37c	-1	provisional	missense	c.823	p.T275A	1.000	HMMPfam_UAA,superfamily_SSF103481	HMMPfam_UAA,superfamily_SSF103481	-	no_errors
SLC5A12	159963	genome.wustl.edu	37	11	26720081	26720081	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	11	26720081	26720081	C	T	SNP	SLC5A12	NM_178498.3	human	genbank	58_37c	-1	validated	missense	c.823	p.A275T	0.999	NULL	HMMPfam_SSF	-	no_errors
STARD4	134429	genome.wustl.edu	37	5	110835685	110835685	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BJ-01A-11W-A071-09	TCGA-BH-A0BJ-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a774aaa7-e53e-4b05-8b5a-08e9949d5fb1	43287256-9ad4-437b-932d-a0e2aef9ae2b	5	110835685	110835685	T	C	SNP	STARD4	NM_139164.1	human	genbank	58_37c	-1	provisional	missense	c.517	p.I173V	1.000	HMMPfam_START,superfamily_SSF55961	HMMPfam_START,superfamily_SSF55961	-	no_errors
