Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTS9	56999	genome.wustl.edu	37	3	64554073	64554073	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	3	64554073	64554073	G	A	SNP	ADAMTS9	NM_182920.1	human	genbank	58_37c	-1	reviewed	missense	c.4495	p.P1499S	1.000	HMMSmart_SM00209	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,HMMPfam_GON,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
CSMD1	64478	genome.wustl.edu	37	8	2830770	2830770	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	8	2830770	2830770	C	T	SNP	CSMD1	NM_033225.5	human	genbank	58_37c	-1	validated	missense	c.8795	p.R2932Q	0.997	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
CSPG4	1464	genome.wustl.edu	37	15	75983021	75983021	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	15	75983021	75983021	G	A	SNP	CSPG4	NM_001897.4	human	genbank	58_37c	-1	reviewed	silent	c.385	p.L129	0.431	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors
DDX5	1655	genome.wustl.edu	37	17	62496266	62496266	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	17	62496266	62496266	G	-	DEL	DDX5	NM_004396.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.1620	p.Y540fs	0.998	NULL	PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMPfam_P68HR,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DSCAML1	57453	genome.wustl.edu	37	11	117651408	117651408	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	11	117651408	117651408	G	A	SNP	DSCAML1	NM_020693.2	human	genbank	58_37c	-1	provisional	missense	c.344	p.A115V	1.000	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ENSG00000212228	0	genome.wustl.edu	37	16	11367988	11367988	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	16	11367988	11367988	G	A	SNP	ENSG00000212228	ENST00000390926	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.223	-	-	-	no_errors
ETAA1	54465	genome.wustl.edu	37	2	67631500	67631500	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	2	67631500	67631500	T	C	SNP	ETAA1	NM_019002.3	human	genbank	58_37c	+1	validated	silent	c.1686	p.V562	0.000	NULL	NULL	-	no_errors
HRNR	388697	genome.wustl.edu	37	1	152188277	152188277	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	1	152188277	152188277	G	T	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	missense	c.5828	p.S1943Y	0.001	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
KDM5C	8242	genome.wustl.edu	37	X	53247017	53247017	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	X	53247017	53247017	A	C	SNP	KDM5C	NM_004187.3	human	genbank	58_37c	-1	reviewed	silent	c.483	p.V161	1.000	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00249,HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,HMMPfam_zf-C5HC2,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,HMMPfam_PLU-1,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
KRT36	8689	genome.wustl.edu	37	17	39645738	39645738	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	17	39645738	39645738	C	A	SNP	KRT36	NM_003771.4	human	genbank	58_37c	-1	reviewed	nonsense	c.379	p.E127*	0.939	HMMPfam_Filament	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors
NOTCH4	4855	genome.wustl.edu	37	6	32191658	32191659	+	In_Frame_Ins	INS	-	-	AGCAGC	rs72110219	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	6	32191658	32191659	-	AGCAGC	INS	NOTCH4	NM_004557.3	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.48_47	p.17in_frame_insLL	0.002:0.003	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_Notch,HMMSmart_SM00004,superfamily_Notch domain,HMMSmart_SM00179,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_NODP,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
OSBPL8	114882	genome.wustl.edu	37	12	76793679	76793679	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	12	76793679	76793679	C	T	SNP	OSBPL8	NM_020841.4	human	genbank	58_37c	-1	reviewed	missense	c.442	p.V148I	1.000	superfamily_PH domain-like	HMMPfam_Oxysterol_BP,HMMPfam_PH,HMMSmart_SM00233,PatternScan_OSBP,superfamily_PH domain-like	-	no_errors
PCDH11X	27328	genome.wustl.edu	37	X	91873568	91873568	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	X	91873568	91873568	C	G	SNP	PCDH11X	NM_032968.3	human	genbank	58_37c	+1	reviewed	missense	c.3673	p.L1225V	0.822	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,HMMPfam_Protocadherin,superfamily_Cadherin-like	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	rs121913284	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	3	178921553	178921553	T	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1035	p.N345K	1.000	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RAD54B	25788	genome.wustl.edu	37	8	95384609	95384609	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	8	95384609	95384609	G	T	SNP	RAD54B	NM_012415.2	human	genbank	58_37c	-1	reviewed	nonsense	c.2522	p.S841*	0.992	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
RGL2	5863	genome.wustl.edu	37	6	33260312	33260312	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	6	33260312	33260312	G	C	SNP	RGL2	NM_004761.3	human	genbank	58_37c	-1	validated	missense	c.2017	p.Q673E	1.000	HMMPfam_RA,HMMSmart_SM00314,superfamily_Ubiquitin-like	HMMPfam_RA,HMMSmart_SM00314,HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF,superfamily_Ubiquitin-like	-	no_errors
RPN1	6184	genome.wustl.edu	37	3	128356884	128356884	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	3	128356884	128356884	C	T	SNP	RPN1	NM_002950.3	human	genbank	58_37c	-1	reviewed	missense	c.391	p.V131M	0.825	HMMPfam_Ribophorin_I	HMMPfam_Ribophorin_I	-	no_errors
RUNX1	861	genome.wustl.edu	37	21	36171704	36171705	+	Frame_Shift_Ins	INS	-	-	TA	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-	-	TA	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	21	36171704	36171705	-	TA	INS	RUNX1	NM_001754.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.861_860	p.L288fs	1.000:1.000	NULL	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
SNHG10	283596	genome.wustl.edu	37	14	95999654	95999654	+	RNA	SNP	T	T	C	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	14	95999654	95999654	T	C	SNP	SNHG10	NR_003138.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
TANC1	85461	genome.wustl.edu	37	2	160031601	160031601	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	2	160031601	160031601	A	G	SNP	TANC1	NM_033394.2	human	genbank	58_37c	+1	validated	silent	c.1641	p.Q547	0.995	NULL	HMMPfam_TPR_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TSC1	7248	genome.wustl.edu	37	9	135797350	135797350	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	9	135797350	135797350	C	T	SNP	TSC1	NM_000368.4	human	genbank	58_37c	-1	reviewed	silent	c.519	p.A173	0.856	HMMPfam_Hamartin	HMMPfam_Hamartin	-	no_errors
