Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABI1	10006	genome.wustl.edu	37	10	27040638	27040638	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	10	27040638	27040638	G	A	SNP	ABI1	NM_005470.3	human	genbank	58_37c	-1	validated	missense	c.1240	p.P414S	0.999	superfamily_SH3-domain	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Abi_HHR	-	no_errors
ACSL1	2180	genome.wustl.edu	37	4	185678828	185678828	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	4	185678828	185678828	C	T	SNP	ACSL1	NM_001995.2	human	genbank	58_37c	-1	reviewed	silent	c.1917	p.V639	1.000	superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like	-	no_errors
ALDH1A1	216	genome.wustl.edu	37	9	75533714	75533714	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	9	75533714	75533714	C	A	SNP	ALDH1A1	NM_000689.3	human	genbank	58_37c	-1	reviewed	missense	c.772	p.A258S	1.000	HMMPfam_Aldedh,superfamily_ALDH-like	HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_ALDH-like	-	no_errors
ARFGEF2	10564	genome.wustl.edu	37	20	47601333	47601333	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	20	47601333	47601333	G	A	SNP	ARFGEF2	NM_006420.2	human	genbank	58_37c	+1	reviewed	missense	c.2026	p.E676K	1.000	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,superfamily_ARM-type_fold	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMPfam_DUF1981,superfamily_ARM-type_fold	-	no_errors
ATP7A	538	genome.wustl.edu	37	X	77244986	77244986	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	X	77244986	77244986	T	C	SNP	ATP7A	NM_000052.4	human	genbank	58_37c	+1	reviewed	missense	c.868	p.S290P	1.000	HMMPfam_HMA,superfamily_HMA heavy metal-associated domain,PatternScan_HMA_1	HMMPfam_Hydrolase,HMMPfam_HMA,superfamily_HMA heavy metal-associated domain,HMMPfam_E1-E2_ATPase,PatternScan_HMA_1,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
BMPR2	659	genome.wustl.edu	37	2	203417447	203417447	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	2	203417447	203417447	G	A	SNP	BMPR2	NM_001204.6	human	genbank	58_37c	+1	reviewed	silent	c.1422	p.R474	0.992	superfamily_Kinase_like,HMMPfam_Pkinase	HMMPfam_Activin_recp,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF57302	-	no_errors
CA11	770	genome.wustl.edu	37	19	49147687	49147691	+	Frame_Shift_Del	DEL	CTCTC	CTCTC	-	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	CTCTC	CTCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	19	49147687	49147691	CTCTC	-	DEL	CA11	NM_001217.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.282_278	p.G93fs	1.000:1.000:1.000:1.000:1.000	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd,PatternScan_ALPHA_CA_1	-	no_errors
CLCA2	9635	genome.wustl.edu	37	1	86919248	86919248	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	1	86919248	86919248	T	G	SNP	CLCA2	NM_006536.5	human	genbank	58_37c	+1	reviewed	silent	c.2352	p.S784	0.961	NULL	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_CLCA_N,HMMPfam_DUF1973,superfamily_SSF53300	-	no_errors
COBLL1	22837	genome.wustl.edu	37	2	165551456	165551456	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	2	165551456	165551456	C	T	SNP	COBLL1	NM_014900.3	human	genbank	58_37c	-1	validated	missense	c.2560	p.D854N	0.000	NULL	HMMPfam_Cobl	-	no_errors
COL11A2	1302	genome.wustl.edu	37	6	33135615	33135615	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	6	33135615	33135615	C	-	DEL	COL11A2	NM_080680.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.3975	p.P1326fs	0.991	NULL	HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00282,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
CTRL	1506	genome.wustl.edu	37	16	67964902	67964902	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	16	67964902	67964902	C	T	SNP	CTRL	NM_001907.1	human	genbank	58_37c	-1	provisional	missense	c.157	p.D53N	0.590	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
DGKA	1606	genome.wustl.edu	37	12	56347471	56347471	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	12	56347471	56347471	C	G	SNP	DGKA	NM_001345.4	human	genbank	58_37c	+1	reviewed	missense	c.2127	p.I709M	1.000	NULL	HMMPfam_DAGK_acc,HMMSmart_SM00045,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMSmart_SM00054,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Cysteine-rich domain	-	no_errors
DMD	1756	genome.wustl.edu	37	X	31950337	31950337	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	X	31950337	31950337	C	G	SNP	DMD	NM_004006.2	human	genbank	58_37c	-1	reviewed	missense	c.6622	p.E2208Q	1.000	HMMPfam_Spectrin,superfamily_Spectrin repeat	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,superfamily_Prefoldin,superfamily_t-snare proteins,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
DNAJB3	414061	genome.wustl.edu	37	2	234652466	234652466	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	2	234652466	234652466	C	T	SNP	DNAJB3	NM_001001394.3	human	genbank	58_37c	-1	validated	missense	c.97	p.D33N	0.997	HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N	HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N,PatternScan_DNAJ_1	-	no_errors
ELK1	2002	genome.wustl.edu	37	X	47500696	47500696	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	X	47500696	47500696	G	A	SNP	ELK1	NM_001114123.1	human	genbank	58_37c	-1	reviewed	missense	c.145	p.R49C	1.000	"HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
FABP9	646480	genome.wustl.edu	37	8	82371416	82371416	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	8	82371416	82371416	T	C	SNP	FABP9	NM_001080526.1	human	genbank	58_37c	-1	provisional	missense	c.230	p.D77G	1.000	HMMPfam_Lipocalin,superfamily_Calycin	PatternScan_FABP,HMMPfam_Lipocalin,superfamily_Calycin	-	no_errors
FKBP1AP1	0	genome.wustl.edu	37	19	58338261	58338267	+	RNA	DEL	TTATTTA	TTATTTA	-	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	TTATTTA	TTATTTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	19	58338261	58338267	TTATTTA	-	DEL	FKBP1AP1	NR_024162.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.000:0.001:0.000:0.007:0.011:0.018:0.037	-	-	-	pseudogene
HIVEP2	3097	genome.wustl.edu	37	6	143093972	143093972	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	6	143093972	143093972	C	A	SNP	HIVEP2	NM_006734.3	human	genbank	58_37c	-1	provisional	missense	c.1904	p.G635V	0.030	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
IL18RAP	8807	genome.wustl.edu	37	2	103039784	103039784	+	Missense_Mutation	SNP	G	G	A	rs142509174	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	2	103039784	103039784	G	A	SNP	IL18RAP	NM_003853.2	human	genbank	58_37c	+1	reviewed	missense	c.47	p.R16Q	0.001	NULL	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00409,superfamily_Immunoglobulin	-	no_errors
KIAA2022	340533	genome.wustl.edu	37	X	73961666	73961666	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	X	73961666	73961666	G	A	SNP	KIAA2022	NM_001008537.2	human	genbank	58_37c	-1	validated	missense	c.2726	p.A909V	0.344	NULL	NULL	-	no_errors
KL	9365	genome.wustl.edu	37	13	33634928	33634928	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	13	33634928	33634928	A	G	SNP	KL	NM_004795.3	human	genbank	58_37c	+1	reviewed	missense	c.1712	p.Y571C	0.937	superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases,PatternScan_GLYCOSYL_HYDROL_F1_2	-	no_errors
LMOD3	56203	genome.wustl.edu	37	3	69168311	69168311	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	3	69168311	69168311	G	A	SNP	LMOD3	NM_198271.3	human	genbank	58_37c	-1	validated	nonsense	c.1195	p.Q399*	1.000	HMMPfam_Tropomodulin,superfamily_RNI-like	HMMPfam_WH2,HMMPfam_Tropomodulin,superfamily_RNI-like	-	no_errors
LOC100288229	0	genome.wustl.edu	37	17	43627199	43627199	+	Missense_Mutation	SNP	C	C	T	rs150619454	by1000genomes	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	17	43627199	43627199	C	T	SNP	LOC100288229	XM_002343565.1	human	genbank	58_37c	-1	model	missense	c.503	p.R168H	0.000	NULL	NULL	-	no_errors
MAGEB4	4115	genome.wustl.edu	37	X	30260727	30260727	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	X	30260727	30260727	G	A	SNP	MAGEB4	NM_002367.3	human	genbank	58_37c	+1	reviewed	missense	c.475	p.E159K	0.001	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAOA	4128	genome.wustl.edu	37	X	43603045	43603046	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	X	43603045	43603046	-	T	INS	MAOA	NM_000240.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1267_1268	p.R424fs	0.720:0.922	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
MCM4	4173	genome.wustl.edu	37	8	48887308	48887308	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	8	48887308	48887308	G	A	SNP	MCM4	NM_005914.2	human	genbank	58_37c	+1	reviewed	missense	c.2151	p.M717I	1.000	HMMPfam_MCM,HMMSmart_MCM,superfamily_SSF52540	HMMPfam_MCM,HMMSmart_MCM,HMMSmart_AAA,superfamily_Nucleic_acid_OB,PatternScan_MCM_1,superfamily_SSF52540	-	no_errors
MELK	9833	genome.wustl.edu	37	9	36643017	36643017	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	9	36643017	36643017	C	T	SNP	MELK	NM_014791.2	human	genbank	58_37c	+1	provisional	silent	c.858	p.C286	0.461	superfamily_Kinase_like	HMMPfam_KA1,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF103243	-	no_errors
NF1	4763	genome.wustl.edu	37	17	29685563	29685563	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	17	29685563	29685563	A	G	SNP	NF1	NM_001042492.2	human	genbank	58_37c	+1	reviewed	missense	c.8036	p.N2679S	1.000	NULL	HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP	-	no_errors
NKAIN4	128414	genome.wustl.edu	37	20	61881347	61881347	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	20	61881347	61881347	G	C	SNP	NKAIN4	NM_152864.3	human	genbank	58_37c	-1	validated	missense	c.132	p.I44M	0.630	HMMPfam_NKAIN	HMMPfam_NKAIN	-	no_errors
NOC3L	64318	genome.wustl.edu	37	10	96121599	96121599	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	10	96121599	96121599	G	A	SNP	NOC3L	NM_022451.9	human	genbank	58_37c	-1	provisional	missense	c.40	p.R14C	1.000	NULL	HMMPfam_CBF,HMMPfam_NOC3p	-	no_errors
OBFC1	79991	genome.wustl.edu	37	10	105664860	105664860	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	10	105664860	105664860	T	C	SNP	OBFC1	NM_024928.4	human	genbank	58_37c	-1	validated	missense	c.284	p.E95G	0.004	HMMPfam_tRNA_anti,superfamily_Nucleic_acid_OB	HMMPfam_tRNA_anti,HMMPfam_DUF1879,superfamily_Nucleic_acid_OB	-	no_errors
ODZ2	57451	genome.wustl.edu	37	5	167671462	167671462	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	5	167671462	167671462	G	A	SNP	ODZ2	NM_001122679.1	human	genbank	58_37c	+1	inferred	missense	c.5531	p.R1844Q	1.000	superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_NHL,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_RHS_repeat,superfamily_Carboxypeptidase regulatory domain,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_NHL repeat,superfamily_EGF/Laminin	-	no_errors
PCDHGA3	56112	genome.wustl.edu	37	5	140724038	140724038	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	5	140724038	140724038	G	A	SNP	PCDHGA3	NM_018916.3	human	genbank	58_37c	+1	reviewed	silent	c.438	p.T146	0.000	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178951964	178951964	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	3	178951964	178951964	G	C	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3019	p.G1007R	1.000	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLCL2	23228	genome.wustl.edu	37	3	17052713	17052713	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	3	17052713	17052713	C	A	SNP	PLCL2	NM_015184.5	human	genbank	58_37c	+1	validated	nonsense	c.1497	p.C499*	0.869	HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl	HMMPfam_C2,HMMSmart_C2,HMMPfam_PI-PLC-X,HMMSmart_PLCXc,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,HMMPfam_PH,HMMSmart_PH,superfamily_C2_CaLB,HMMPfam_efhand_like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF47473,superfamily_SSF50729	-	no_errors
PPP1R9A	55607	genome.wustl.edu	37	7	94540216	94540223	+	Frame_Shift_Del	DEL	GAGGTGTT	GAGGTGTT	-	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	GAGGTGTT	GAGGTGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	7	94540216	94540223	GAGGTGTT	-	DEL	PPP1R9A	NM_017650.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.791_798	p.G265fs	0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors
PRUNE2	158471	genome.wustl.edu	37	9	79259823	79259823	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	9	79259823	79259823	G	T	SNP	PRUNE2	NM_015225.2	human	genbank	58_37c	-1	validated	missense	c.8560	p.P2854T	0.030	NULL	HMMSmart_SEC14,superfamily_CRAL_TRIO_C,superfamily_Ferritin/RR_like,superfamily_SSF64182	-	no_errors
RIMS2	9699	genome.wustl.edu	37	8	104709351	104709351	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	8	104709351	104709351	G	A	SNP	RIMS2	NM_001100117.1	human	genbank	58_37c	+1	validated	missense	c.214	p.V72I	1.000	HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_RPH3A_effector,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
SHROOM4	57477	genome.wustl.edu	37	X	50350711	50350713	+	In_Frame_Del	DEL	TCC	TCC	-	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-11A-22W-A10F-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	50589b20-69ac-484a-9fe8-d988a891d86e	X	50350711	50350713	TCC	-	DEL	SHROOM4	NM_020717.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.3431_3429	p.E1147in_frame_del	0.003:0.003:0.000	NULL	HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors
TCFL5	10732	genome.wustl.edu	37	20	61488983	61488983	+	Silent	SNP	C	C	T	rs193288319	by1000genomes	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	20	61488983	61488983	C	T	SNP	TCFL5	NM_006602.2	human	genbank	58_37c	-1	validated	silent	c.1002	p.A334	1.000	NULL	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors
TOX2	84969	genome.wustl.edu	37	20	42680113	42680113	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	20	42680113	42680113	G	A	SNP	TOX2	NM_001098797.1	human	genbank	58_37c	+1	validated	silent	c.579	p.P193	0.993	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179604078	179604078	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	2	179604078	179604078	A	G	SNP	TTN	ENST00000342175	human	ensembl	58_37c	-1	known	missense	c.13369	p.S4457P	0.222	HMMSmart_SM00408,HMMSmart_SM00409	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
USP54	159195	genome.wustl.edu	37	10	75277121	75277121	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	10	75277121	75277121	A	C	SNP	USP54	NM_152586.3	human	genbank	58_37c	-1	provisional	silent	c.3063	p.A1021	0.800	NULL	HMMPfam_UCH,superfamily_Cysteine proteinases	-	no_errors
ZNF124	7678	genome.wustl.edu	37	1	247320267	247320267	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0H9-01A-11W-A071-09	TCGA-BH-A0H9-10A-01W-A071-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6be3dccb-12f8-4ef5-962f-21a0b26f81ad	71bbe21d-80fd-49be-ae4b-041f0ed1e617	1	247320267	247320267	A	G	SNP	ZNF124	NM_003431.2	human	genbank	58_37c	-1	provisional	silent	c.471	p.N157	0.009	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
