Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADHFE1	137872	genome.wustl.edu	37	8	67356944	67356944	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	8	67356944	67356944	C	T	SNP	ADHFE1	NM_144650.2	human	genbank	58_37c	+1	validated	missense	c.314	p.T105M	1.000	HMMPfam_Fe-ADH,superfamily_Dehydroquinate synthase-like	HMMPfam_Fe-ADH,superfamily_Dehydroquinate synthase-like	-	no_errors
AGGF1	55109	genome.wustl.edu	37	5	76358903	76358903	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	5	76358903	76358903	T	G	SNP	AGGF1	NM_018046.3	human	genbank	58_37c	+1	validated	missense	c.1971	p.H657Q	1.000	HMMPfam_G-patch,HMMSmart_SM00443	HMMPfam_FHA,HMMSmart_SM00240,HMMPfam_G-patch,HMMSmart_SM00443,superfamily_SMAD/FHA domain	-	no_errors
AP4M1	9179	genome.wustl.edu	37	7	99700554	99700554	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	7	99700554	99700554	C	G	SNP	AP4M1	NM_004722.3	human	genbank	58_37c	+1	reviewed	missense	c.322	p.L108V	0.998	HMMPfam_Clat_adaptor_s,superfamily_Longin_like	HMMPfam_Clat_adaptor_s,HMMPfam_Adap_comp_sub,superfamily_AP50,superfamily_Longin_like,PatternScan_CLAT_ADAPTOR_M_1,PatternScan_CLAT_ADAPTOR_M_2	-	no_errors
CAD	790	genome.wustl.edu	37	2	27460602	27460602	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	2	27460602	27460602	C	A	SNP	CAD	NM_004341.3	human	genbank	58_37c	+1	reviewed	missense	c.4580	p.A1527D	1.000	superfamily_SSF51556	HMMPfam_GATase,PatternScan_DIHYDROOROTASE_1,PatternScan_DIHYDROOROTASE_2,HMMPfam_CPSase_sm_chain,superfamily_CP_synthsmall,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,HMMPfam_CPSase_L_D3,superfamily_CarbamoylP_synth_lsu_oligo,HMMPfam_CPSase_L_chain,PatternScan_CARBAMOYLTRANSFERASE,superfamily_Asp/Orn_carbamoyltranf,HMMPfam_OTCace,HMMPfam_OTCace_N,HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,HMMPfam_MGS,superfamily_PreATP-grasp-like,superfamily_SSF51556,superfamily_SSF52317,superfamily_SSF52335,superfamily_SSF56059	-	no_errors
CCR3	1232	genome.wustl.edu	37	3	46307328	46307328	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	3	46307328	46307328	C	-	DEL	CCR3	NM_001837.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.679	p.L227fs	0.884	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
DPEP1	1800	genome.wustl.edu	37	16	89696849	89696849	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	16	89696849	89696849	G	T	SNP	DPEP1	NM_001128141.1	human	genbank	58_37c	+1	validated	missense	c.31	p.V11L	0.949	NULL	PatternScan_RENAL_DIPEPTIDASE_1,HMMPfam_Peptidase_M19,superfamily_SSF51556	-	no_errors
ENSG00000183199	0	genome.wustl.edu	37	4	88813271	88813272	+	In_Frame_Ins	INS	-	-	ATT	rs35753589	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	4	88813271	88813272	-	ATT	INS	HSP90AA4P	ENST00000327934	human	ensembl	58_37c	+1	known	3_prime_untranslated_region	c.*88813271	NULL	1.000:1.000	-	-	-	no_coding_region:pseudogene
FLG	2312	genome.wustl.edu	37	1	152276139	152276139	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	1	152276139	152276139	C	T	SNP	FLG	NM_002016.1	human	genbank	58_37c	-1	reviewed	silent	c.11223	p.Q3741	0.009	NULL	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
FLNB	2317	genome.wustl.edu	37	3	58097580	58097582	+	In_Frame_Del	DEL	GGC	GGC	-	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	GGC	GGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	3	58097580	58097582	GGC	-	DEL	FLNB	NM_001457.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.2547_2549	p.A850in_frame_del	1.000:1.000:1.000	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin	HMMSmart_IG_FLMN,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,superfamily_Ig_E-set,superfamily_Calponin-homology,HMMPfam_Filamin	-	no_errors
GAS2L1	10634	genome.wustl.edu	37	22	29706530	29706530	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	22	29706530	29706530	T	C	SNP	GAS2L1	NM_152237.1	human	genbank	58_37c	+1	reviewed	silent	c.735	p.F245	0.989	HMMPfam_GAS2,HMMSmart_GAS2	HMMPfam_CH,HMMSmart_CH,HMMPfam_GAS2,HMMSmart_GAS2,superfamily_Calponin-homology	-	no_errors
GRIK4	2900	genome.wustl.edu	37	11	120833362	120833362	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	11	120833362	120833362	C	T	SNP	GRIK4	NM_014619.2	human	genbank	58_37c	+1	reviewed	silent	c.2238	p.T746	1.000	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
KIAA1109	84162	genome.wustl.edu	37	4	123156157	123156157	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	4	123156157	123156157	G	A	SNP	KIAA1109	NM_015312.3	human	genbank	58_37c	+1	reviewed	missense	c.3553	p.E1185K	1.000	NULL	PatternScan_ASP_PROTEASE,HMMPfam_FSA_C	-	no_errors
KPNA4	3840	genome.wustl.edu	37	3	160283041	160283041	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	3	160283041	160283041	T	C	SNP	KPNA4	NM_002268.3	human	genbank	58_37c	-1	reviewed	silent	c.30	p.Q10	1.000	HMMPfam_IBB	HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_IBB,superfamily_ARM repeat	-	no_errors
MFSD8	256471	genome.wustl.edu	37	4	128854182	128854182	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	4	128854182	128854182	A	G	SNP	MFSD8	NM_152778.2	human	genbank	58_37c	-1	reviewed	missense	c.821	p.V274A	0.929	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
MUSK	4593	genome.wustl.edu	37	9	113563026	113563026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	9	113563026	113563026	G	A	SNP	MUSK	NM_005592.3	human	genbank	58_37c	+1	reviewed	missense	c.2368	p.V790M	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,PatternScan_TUBULIN_B_AUTOREG,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Fz,superfamily_Immunoglobulin	-	no_errors
PABPC3	5042	genome.wustl.edu	37	13	25670833	25670833	+	Missense_Mutation	SNP	G	G	A	rs142438880	byFrequency	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	13	25670833	25670833	G	A	SNP	PABPC3	NM_030979.2	human	genbank	58_37c	+1	validated	missense	c.497	p.R166H	1.000	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_PABP,HMMSmart_SM00517,superfamily_PABC (PABP) domain,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors
PDE9A	5152	genome.wustl.edu	37	21	44182234	44182234	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	21	44182234	44182234	A	G	SNP	PDE9A	NM_002606.2	human	genbank	58_37c	+1	reviewed	missense	c.1127	p.N376S	1.000	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	3	178952085	178952085	A	T	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047L	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PNMA2	10687	genome.wustl.edu	37	8	26365461	26365461	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	8	26365461	26365461	G	A	SNP	PNMA2	NM_007257.5	human	genbank	58_37c	-1	validated	missense	c.811	p.R271W	0.023	HMMPfam_Retrotrans_gag	HMMPfam_Retrotrans_gag	-	no_errors
PPP3CA	5530	genome.wustl.edu	37	4	102117231	102117231	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	4	102117231	102117231	A	G	SNP	PPP3CA	NM_000944.4	human	genbank	58_37c	-1	validated	missense	c.101	p.V34A	1.000	superfamily_Metallo-dependent phosphatases	HMMPfam_Metallophos,HMMSmart_SM00156,PatternScan_SER_THR_PHOSPHATASE,superfamily_Metallo-dependent phosphatases	-	no_errors
TLR9	54106	genome.wustl.edu	37	3	52257592	52257592	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	3	52257592	52257592	C	T	SNP	TLR9	NM_017442.2	human	genbank	58_37c	-1	reviewed	missense	c.740	p.R247H	0.011	superfamily_L domain-like	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
TYR	7299	genome.wustl.edu	37	11	89018003	89018003	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	11	89018003	89018003	C	T	SNP	TYR	NM_000372.4	human	genbank	58_37c	+1	reviewed	missense	c.1247	p.A416V	1.000	superfamily_Di-copper centre-containing domain	PatternScan_EGF_LAM_1,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,PatternScan_TYROSINASE_2,superfamily_Di-copper centre-containing domain,PatternScan_EGF_1	-	no_errors
ZNF653	115950	genome.wustl.edu	37	19	11598576	11598576	+	Silent	SNP	G	G	A	rs142199640	byCluster;byFrequency;by1000genomes	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc578e75-e63c-4bdf-abfa-e2d063c9cd6d	ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45	19	11598576	11598576	G	A	SNP	ZNF653	NM_138783.3	human	genbank	58_37c	-1	validated	silent	c.702	p.S234	0.997	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,HMMSmart_AT_hook,superfamily_SSF57667	-	no_errors
