Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AP1M2	10053	genome.wustl.edu	37	19	10690471	10690471	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	19	10690471	10690471	C	A	SNP	AP1M2	NM_005498.4	human	genbank	58_37c	-1	reviewed	missense	c.737	p.R246L	1.000	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_M_1,PatternScan_CLAT_ADAPTOR_M_2	-	no_errors
CDHR1	0	genome.wustl.edu	37	10	85965678	85965678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	10	85965678	85965678	G	A	SNP	CDHR1	NM_033100.2	human	genbank	58_37c	+1	reviewed	missense	c.958	p.V320I	0.956	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
CNGA2	1260	genome.wustl.edu	37	X	150911669	150911669	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	X	150911669	150911669	G	A	SNP	CNGA2	NM_005140.1	human	genbank	58_37c	+1	reviewed	missense	c.694	p.D232N	0.997	HMMPfam_Ion_trans,superfamily_SSF81324	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324	-	no_errors
ENO1	2023	genome.wustl.edu	37	1	8928049	8928049	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	1	8928049	8928049	T	G	SNP	ENO1	NM_001428.2	human	genbank	58_37c	-1	reviewed	missense	c.308	p.K103T	1.000	HMMPfam_Enolase_N,superfamily_Enolase N-terminal domain-like	HMMPfam_Enolase_C,HMMPfam_Enolase_N,PatternScan_ENOLASE,superfamily_Enolase C-terminal domain-like,superfamily_Enolase N-terminal domain-like	-	no_errors
FASN	2194	genome.wustl.edu	37	17	80042925	80042925	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	17	80042925	80042925	G	A	SNP	FASN	NM_004104.4	human	genbank	58_37c	-1	reviewed	silent	c.4395	p.G1465	0.131	NULL	HMMPfam_Thioesterase,HMMPfam_adh_short,PatternScan_PHOSPHOPANTETHEINE,HMMPfam_PP-binding,superfamily_ACP-like,superfamily_GroES-like,HMMPfam_ADH_zinc_N,HMMPfam_Methyltransf_12,HMMPfam_ketoacyl-synt,HMMPfam_Ketoacyl-synt_C,HMMPfam_Acyl_transf_1,superfamily_FabD/lysophospholipase-like,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase,superfamily_Thiolase-like,superfamily_NAD(P)-binding Rossmann-fold domains,PatternScan_B_KETOACYL_SYNTHASE,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_alpha/beta-Hydrolases	-	no_errors
FBXO44	93611	genome.wustl.edu	37	1	11718651	11718651	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	1	11718651	11718651	G	A	SNP	FBXO44	NM_001014765.1	human	genbank	58_37c	+1	reviewed	missense	c.454	p.D152N	1.000	HMMPfam_FBA,superfamily_Galactose-binding domain-like	HMMPfam_F-box,HMMSmart_SM00256,HMMPfam_FBA,superfamily_Galactose-binding domain-like,superfamily_F-box domain	-	no_errors
GTSF1	121355	genome.wustl.edu	37	12	54857054	54857054	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	12	54857054	54857054	C	T	SNP	GTSF1	NM_144594.2	human	genbank	58_37c	-1	validated	missense	c.145	p.A49T	1.000	HMMPfam_UPF0224	HMMPfam_UPF0224	-	no_errors
GUCY2C	2984	genome.wustl.edu	37	12	14835986	14835986	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	12	14835986	14835986	C	T	SNP	GUCY2C	NM_004963.3	human	genbank	58_37c	-1	validated	missense	c.601	p.D201N	1.000	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMSmart_SM00219,HMMPfam_ANF_receptor,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,PatternScan_GUANYLATE_CYCLASE_1,superfamily_Periplasmic binding protein-like I	-	no_errors
H2AFY2	55506	genome.wustl.edu	37	10	71849864	71849864	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	10	71849864	71849864	C	A	SNP	H2AFY2	NM_018649.2	human	genbank	58_37c	+1	validated	missense	c.221	p.A74D	1.000	HMMSmart_H2A,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_H2A,HMMPfam_Macro,HMMPfam_Histone,superfamily_Histone-fold,superfamily_SSF52949	-	no_errors
LOC100134713	0	genome.wustl.edu	37	7	140396472	140396472	+	RNA	SNP	C	C	G	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	7	140396472	140396472	C	G	SNP	LOC100134713	NR_024454.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.017	-	-	-	no_errors
LOC728498	728498	genome.wustl.edu	37	15	30905821	30905821	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	15	30905821	30905821	C	T	SNP	LOC728498	XM_002343357.1	human	genbank	58_37c	+1	model	silent	c.1272	p.G424	0.987	NULL	NULL	-	no_errors
NACAD	23148	genome.wustl.edu	37	7	45124668	45124668	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	7	45124668	45124668	T	C	SNP	NACAD	ENST00000258775	human	ensembl	58_37c	-1	known	missense	c.1111	p.T371A	1.000	NULL	HMMPfam_NAC	-	no_errors
OSBPL8	114882	genome.wustl.edu	37	12	76765227	76765227	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	12	76765227	76765227	C	T	SNP	OSBPL8	NM_020841.4	human	genbank	58_37c	-1	reviewed	splice_site	c.2054+1	e18+1	1.000	-	-	-	no_errors
PEG3	5178	genome.wustl.edu	37	19	57334192	57334192	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	19	57334192	57334192	C	A	SNP	PEG3	NM_006210.2	human	genbank	58_37c	-1	reviewed	missense	c.494	p.W165L	0.278	NULL	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PGRMC1	10857	genome.wustl.edu	37	X	118377191	118377191	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	X	118377191	118377191	G	A	SNP	PGRMC1	NM_006667.3	human	genbank	58_37c	+1	reviewed	missense	c.562	p.D188N	1.000	NULL	HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain	-	no_errors
SEPT9	10801	genome.wustl.edu	37	17	75471846	75471846	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	17	75471846	75471846	C	T	SNP	SEPT9	NM_001113495.1	human	genbank	58_37c	+1	reviewed	silent	c.246	p.H82	0.000	NULL	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TEX13A	56157	genome.wustl.edu	37	X	104464674	104464674	+	Silent	SNP	G	G	A	rs183606927	by1000genomes	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	X	104464674	104464674	G	A	SNP	TEX13A	ENST00000413579	human	ensembl	58_37c	-1	known	silent	c.408	p.L136	0.000	NULL	HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,superfamily_SSF90209	-	no_errors
THOP1	7064	genome.wustl.edu	37	19	2811608	2811608	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f	f82dbed7-9803-4143-8b84-e8beb908c205	19	2811608	2811608	C	T	SNP	THOP1	NM_003249.3	human	genbank	58_37c	+1	provisional	missense	c.1784	p.P595L	0.998	HMMPfam_Peptidase_M3,superfamily_SSF55486	HMMPfam_Peptidase_M3,PatternScan_ZINC_PROTEASE,superfamily_SSF55486	-	no_errors
