Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
A2M	2	genome.wustl.edu	37	12	9242995	9242995	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	12	9242995	9242995	G	A	SNP	A2M	NM_000014.4	human	genbank	58_37c	-1	reviewed	silent	c.2553	p.N851	0.003	NULL	HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors
ACER3	55331	genome.wustl.edu	37	11	76696702	76696702	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	11	76696702	76696702	G	T	SNP	ACER3	NM_018367.5	human	genbank	58_37c	+1	validated	missense	c.336	p.K112N	0.928	HMMPfam_aPHC	HMMPfam_aPHC	-	no_errors
ALS2CR11	151254	genome.wustl.edu	37	2	202356525	202356525	+	Silent	SNP	T	T	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	2	202356525	202356525	T	C	SNP	ALS2CR11	ENST00000439140	human	ensembl	58_37c	-1	known	silent	c.4539	p.Q1513	0.018	NULL	NULL	-	no_errors
ANKFN1	162282	genome.wustl.edu	37	17	54431265	54431265	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	17	54431265	54431265	C	T	SNP	ANKFN1	NM_153228.2	human	genbank	58_37c	+1	validated	silent	c.468	p.L156	0.988	HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-	no_errors
AQP12A	375318	genome.wustl.edu	37	2	241631799	241631799	+	Silent	SNP	C	T	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	2	241631799	241631799	C	T	SNP	AQP12A	NM_198998.1	human	genbank	58_37c	+1	provisional	silent	c.432	p.R144	0.071	superfamily_MIP	PatternScan_MIP,superfamily_MIP	-	no_errors
ATP2B2	491	genome.wustl.edu	37	3	10387757	10387757	+	Silent	SNP	G	G	A	rs145037079	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	3	10387757	10387757	G	A	SNP	ATP2B2	NM_001001331.2	human	genbank	58_37c	-1	reviewed	silent	c.2469	p.N823	0.992	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
BRMS1	25855	genome.wustl.edu	37	11	66105190	66105190	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	11	66105190	66105190	C	T	SNP	BRMS1	NM_001024957.1	human	genbank	58_37c	-1	reviewed	nonsense	c.822	p.W274*	0.009	NULL	HMMPfam_Sds3	-	no_errors
C4orf50	0	genome.wustl.edu	37	4	5977632	5977632	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	4	5977632	5977632	G	A	SNP	C4orf50	NM_207405.1	human	genbank	58_37c	-1	predicted	silent	c.219	p.P73	0.496	NULL	NULL	-	no_errors
CCDC136	64753	genome.wustl.edu	37	7	128444776	128444776	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	7	128444776	128444776	G	A	SNP	CCDC136	NM_022742.3	human	genbank	58_37c	+1	validated	missense	c.743	p.S248N	1.000	NULL	superfamily_Prefoldin,superfamily_Spectrin repeat	-	no_errors
CPEB1	64506	genome.wustl.edu	37	15	83224732	83224732	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	15	83224732	83224732	A	C	SNP	CPEB1	NM_030594.3	human	genbank	58_37c	-1	reviewed	missense	c.747	p.S249R	0.111	NULL	superfamily_SSF54928	-	no_errors
DAAM2	23500	genome.wustl.edu	37	6	39832810	39832810	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	6	39832810	39832810	G	A	SNP	DAAM2	NM_015345.2	human	genbank	58_37c	+1	validated	missense	c.388	p.V130M	0.995	HMMPfam_Drf_GBD	HMMSmart_SM00498,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	-	no_errors
ENSG00000196922	0	genome.wustl.edu	37	8	146202406	146202406	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	8	146202406	146202406	T	C	SNP	ZNF252	ENST00000355436	human	ensembl	58_37c	-1	known	missense	c.1442	p.E481G	0.817	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
EPRS	2058	genome.wustl.edu	37	1	220152916	220152916	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	1	220152916	220152916	C	T	SNP	EPRS	NM_004446.2	human	genbank	58_37c	-1	reviewed	missense	c.3753	p.M1251I	1.000	superfamily_SSF55681	HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA-synt_2b,HMMPfam_HGTP_anticodon,superfamily_Anticodon_bd,superfamily_S15/NS1_bind,superfamily_GST_C_like,superfamily_Ribosomal_L25rel,HMMPfam_ProRS-C_1,superfamily_Pro-tRNA_synth_II_C,HMMPfam_tRNA-synt_1c,HMMPfam_tRNA-synt_1c_C,superfamily_SSF52374,superfamily_SSF55681	-	no_errors
FASTK	10922	genome.wustl.edu	37	7	150774052	150774052	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	7	150774052	150774052	G	C	SNP	FASTK	NM_006712.3	human	genbank	58_37c	-1	reviewed	missense	c.1490	p.S497W	0.996	HMMPfam_RAP	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors
GAGE13	645051	genome.wustl.edu	37	X	49192696	49192696	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	X	49192696	49192696	C	T	SNP	GAGE13	NM_001098412.1	human	genbank	58_37c	+1	validated	missense	c.209	p.P70L	0.009	HMMPfam_GAGE	HMMPfam_GAGE	-	no_errors
GPM6B	2824	genome.wustl.edu	37	X	13834993	13834993	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	X	13834993	13834993	C	G	SNP	GPM6B	NM_001001995.1	human	genbank	58_37c	-1	reviewed	missense	c.31	p.E11Q	1.000	NULL	HMMPfam_Myelin_PLP,HMMSmart_PLP,PatternScan_MYELIN_PLP_1,PatternScan_MYELIN_PLP_2	-	no_errors
IRGC	56269	genome.wustl.edu	37	19	44222997	44222997	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	19	44222997	44222997	C	T	SNP	IRGC	NM_019612.3	human	genbank	58_37c	+1	validated	missense	c.287	p.P96L	0.002	HMMPfam_IIGP,superfamily_SSF52540	HMMPfam_IIGP,superfamily_SSF52540	-	no_errors
LIM2	3982	genome.wustl.edu	37	19	51890496	51890496	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	19	51890496	51890496	G	A	SNP	LIM2	NM_030657.3	human	genbank	58_37c	-1	reviewed	missense	c.202	p.R68C	0.000	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_PMP22_2	-	no_errors
LNX1	84708	genome.wustl.edu	37	4	54362438	54362438	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	4	54362438	54362438	G	T	SNP	LNX1	NM_001126328.1	human	genbank	58_37c	-1	reviewed	missense	c.1102	p.Q368K	0.030	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
LRBA	987	genome.wustl.edu	37	4	151793884	151793884	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	4	151793884	151793884	G	A	SNP	LRBA	NM_006726.2	human	genbank	58_37c	-1	validated	missense	c.2189	p.S730L	1.000	superfamily_ARM repeat	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
LSG1	55341	genome.wustl.edu	37	3	194387183	194387183	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	3	194387183	194387183	C	T	SNP	LSG1	NM_018385.2	human	genbank	58_37c	-1	reviewed	silent	c.345	p.R115	0.879	NULL	HMMPfam_MMR_HSR1,superfamily_SSF52540	-	no_errors
MTHFD1	4522	genome.wustl.edu	37	14	64898264	64898264	+	Silent	SNP	C	C	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	14	64898264	64898264	C	A	SNP	MTHFD1	NM_005956.3	human	genbank	58_37c	+1	reviewed	silent	c.1326	p.L442	1.000	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_FTHFS,PatternScan_FTHFS_1,PatternScan_FTHFS_2,HMMPfam_THF_DHG_CYH,HMMPfam_THF_DHG_CYH_C,PatternScan_THF_DHG_CYH_1,PatternScan_THF_DHG_CYH_2,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Aminoacid dehydrogenase-like N-terminal domain	-	no_errors
MYH14	79784	genome.wustl.edu	37	19	50771580	50771580	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	19	50771580	50771580	C	T	SNP	MYH14	NM_001077186.1	human	genbank	58_37c	+1	reviewed	missense	c.2890	p.R964C	0.989	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NEB	4703	genome.wustl.edu	37	2	152410473	152410473	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	2	152410473	152410473	T	C	SNP	NEB	NM_004543.4	human	genbank	58_37c	-1	reviewed	missense	c.14392	p.M4798V	1.000	HMMSmart_SM00227	HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_errors
NTNG2	84628	genome.wustl.edu	37	9	135073714	135073714	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	9	135073714	135073714	G	A	SNP	NTNG2	NM_032536.2	human	genbank	58_37c	+1	validated	missense	c.575	p.R192H	1.000	HMMPfam_Laminin_N,HMMSmart_SM00136	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin	-	no_errors
NXN	64359	genome.wustl.edu	37	17	722712	722712	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	17	722712	722712	G	T	SNP	NXN	NM_022463.3	human	genbank	58_37c	-1	validated	silent	c.787	p.R263	1.000	HMMPfam_AhpC-TSA,superfamily_Thioredoxin-like	HMMPfam_AhpC-TSA,superfamily_Thioredoxin-like	-	no_errors
OR52J3	119679	genome.wustl.edu	37	11	5067871	5067871	+	Missense_Mutation	SNP	T	T	C	rs147993969	byCluster;byFrequency;by1000genomes	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	11	5067871	5067871	T	C	SNP	OR52J3	NM_001001916.2	human	genbank	58_37c	+1	validated	missense	c.116	p.V39A	0.126	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PARD6A	50855	genome.wustl.edu	37	16	67695950	67695950	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	16	67695950	67695950	C	T	SNP	PARD6A	NM_016948.2	human	genbank	58_37c	+1	reviewed	silent	c.441	p.D147	0.998	superfamily_PDZ domain-like	HMMPfam_PB1,HMMSmart_SM00666,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
PC	5091	genome.wustl.edu	37	11	66631396	66631396	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	11	66631396	66631396	C	T	SNP	PC	NM_000920.3	human	genbank	58_37c	-1	reviewed	missense	c.1217	p.R406H	1.000	HMMPfam_Biotin_carb_C,superfamily_Rudmnt_hyb_motif	HMMPfam_Biotin_lipoyl,HMMPfam_HMGL-like,PatternScan_BIOTIN,HMMPfam_PYC_OADA,HMMPfam_CPSase_L_D2,HMMPfam_CPSase_L_chain,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,superfamily_Rudmnt_hyb_motif,superfamily_PreATP-grasp-like,superfamily_SSF51569,superfamily_SSF56059,superfamily_SSF89000	-	no_errors
PCBP2	5094	genome.wustl.edu	37	12	53849274	53849274	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	12	53849274	53849274	G	A	SNP	PCBP2	NM_005016.5	human	genbank	58_37c	+1	reviewed	silent	c.123	p.E41	0.980	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791	-	no_errors
PLCD1	5333	genome.wustl.edu	37	3	38051418	38051429	+	In_Frame_Del	DEL	TGACCCCATCCA	TGACCCCATCCA	-	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	TGACCCCATCCA	TGACCCCATCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	3	38051418	38051429	TGACCCCATCCA	-	DEL	PLCD1	NM_001130964.1	human	genbank	58_37c	-1	validated	in_frame_del	c.1327_1316	p.LDGVT439in_frame_delP	0.001:0.000:0.000:0.001:0.000:0.007:0.007:0.003:0.992:0.996:0.988:0.991	HMMPfam_PI-PLC-X,HMMSmart_PLCXc,superfamily_PLC-like_Pdiesterase_TIM-brl	HMMPfam_C2,HMMSmart_C2,HMMPfam_PI-PLC-X,HMMSmart_PLCXc,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,HMMPfam_PH,HMMSmart_PH,HMMSmart_EFh,superfamily_C2_CaLB,HMMPfam_efhand_like,superfamily_PLC-like_Pdiesterase_TIM-brl,PatternScan_EF_HAND_1,superfamily_SSF47473,superfamily_SSF50729	-	no_errors
PTPRM	5797	genome.wustl.edu	37	18	8376551	8376551	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	18	8376551	8376551	G	A	SNP	PTPRM	NM_001105244.1	human	genbank	58_37c	+1	reviewed	missense	c.3418	p.V1140I	1.000	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMSmart_SM00404,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_ig,PatternScan_TYR_PHOSPHATASE_1,superfamily_Immunoglobulin,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RARB	5915	genome.wustl.edu	37	3	25542765	25542765	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	3	25542765	25542765	C	A	SNP	RARB	NM_000965.3	human	genbank	58_37c	+1	reviewed	nonsense	c.399	p.C133*	1.000	HMMPfam_zf-C4,HMMSmart_ZnF_C4,superfamily_Str_ncl_receptor,superfamily_SSF57716	HMMPfam_Hormone_recep,HMMSmart_HOLI,HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,superfamily_SSF57716	-	no_errors
REV3L	5980	genome.wustl.edu	37	6	111696389	111696389	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	6	111696389	111696389	T	C	SNP	REV3L	NM_002912.3	human	genbank	58_37c	-1	validated	missense	c.3169	p.K1057E	1.000	superfamily_Ribonuclease H-like	HMMPfam_DNA_pol_B_exo,HMMPfam_DNA_pol_B,HMMSmart_SM00486,superfamily_Ribonuclease H-like,PatternScan_DNA_POLYMERASE_B,superfamily_DNA/RNA polymerases	-	no_errors
RREB1	6239	genome.wustl.edu	37	6	7211836	7211836	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	6	7211836	7211836	G	A	SNP	RREB1	NM_001003699.3	human	genbank	58_37c	+1	reviewed	missense	c.601	p.E201K	0.498	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
SHANK2	22941	genome.wustl.edu	37	11	70333654	70333654	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	11	70333654	70333654	C	A	SNP	SHANK2	NM_012309.3	human	genbank	58_37c	-1	reviewed	missense	c.959	p.R320I	0.898	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology	-	no_errors
SHANK3	85358	genome.wustl.edu	37	22	51143180	51143180	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	22	51143180	51143180	G	A	SNP	SHANK3	NM_001080420.1	human	genbank	58_37c	+1	reviewed	missense	c.1834	p.E612K	1.000	HMMSmart_SM00228,superfamily_PDZ domain-like	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_SH3_2	-	no_errors
SLC22A3	6581	genome.wustl.edu	37	6	160864753	160864753	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	6	160864753	160864753	G	T	SNP	SLC22A3	NM_021977.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1489	p.E497*	0.999	superfamily_MFS general substrate transporter	PatternScan_SUGAR_TRANSPORT_1,HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLC22A9	114571	genome.wustl.edu	37	11	63175599	63175599	+	Missense_Mutation	SNP	G	G	A	rs144303933	byFrequency	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	11	63175599	63175599	G	A	SNP	SLC22A9	NM_080866.2	human	genbank	58_37c	+1	validated	missense	c.1304	p.R435H	0.005	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLMAP	7871	genome.wustl.edu	37	3	57908744	57908745	+	In_Frame_Ins	INS	-	-	AAT	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	3	57908744	57908745	-	AAT	INS	SLMAP	NM_007159.2	human	genbank	58_37c	+1	validated	in_frame_ins	c.2337_2338	p.781in_frame_insN	1.000:1.000	NULL	HMMPfam_FHA,HMMSmart_FHA,PatternScan_FETUIN_2,HMMPfam_Prefoldin_2,superfamily_SMAD_FHA	-	no_errors
STAB1	23166	genome.wustl.edu	37	3	52552806	52552806	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	3	52552806	52552806	G	A	SNP	STAB1	NM_015136.2	human	genbank	58_37c	+1	reviewed	missense	c.4955	p.R1652Q	0.957	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain,HMMSmart_SM00179,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_C-type lectin-like,PatternScan_CYTOCHROME_P450,superfamily_EGF/Laminin	-	no_errors
STIM1	6786	genome.wustl.edu	37	11	4112595	4112595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	11	4112595	4112595	G	A	SNP	STIM1	NM_003156.3	human	genbank	58_37c	+1	reviewed	missense	c.1625	p.R542H	1.000	NULL	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2,PatternScan_EF_HAND_1	-	no_errors
TDRD5	163589	genome.wustl.edu	37	1	179604942	179604942	+	Silent	SNP	C	C	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	1	179604942	179604942	C	A	SNP	TDRD5	NM_173533.2	human	genbank	58_37c	+1	provisional	silent	c.1440	p.I480	0.721	HMMPfam_TUDOR	HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT	-	no_errors
TEX15	56154	genome.wustl.edu	37	8	30700783	30700783	+	Silent	SNP	T	T	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	8	30700783	30700783	T	C	SNP	TEX15	NM_031271.3	human	genbank	58_37c	-1	validated	silent	c.5751	p.L1917	0.002	NULL	NULL	-	no_errors
TMTC2	160335	genome.wustl.edu	37	12	83251115	83251115	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	12	83251115	83251115	T	G	SNP	TMTC2	NM_152588.1	human	genbank	58_37c	+1	provisional	missense	c.410	p.V137G	1.000	NULL	HMMPfam_TPR_1,HMMPfam_TPR_2,HMMPfam_DUF1736,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7576924	7576925	+	Frame_Shift_Del	DEL	GT	GT	-	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	17	7576924	7576925	GT	-	DEL	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.922_921	p.L308fs	0.955:0.952	NULL	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TPST2	8459	genome.wustl.edu	37	22	26937270	26937270	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	22	26937270	26937270	C	T	SNP	TPST2	NM_001008566.1	human	genbank	58_37c	-1	reviewed	missense	c.327	p.M109I	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TRAPPC10	7109	genome.wustl.edu	37	21	45475668	45475668	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	21	45475668	45475668	T	-	DEL	TRAPPC10	NM_003274.4	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.572	p.M192fs	1.000	NULL	PatternScan_AA_TRNA_LIGASE_I	-	no_errors
ZDBF2	57683	genome.wustl.edu	37	2	207174608	207174608	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	2	207174608	207174608	G	T	SNP	ZDBF2	NM_020923.1	human	genbank	58_37c	+1	validated	missense	c.5356	p.D1786Y	0.000	NULL	HMMPfam_zf-DBF	-	no_errors
ZNF695	57116	genome.wustl.edu	37	1	247151327	247151327	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	1	247151327	247151327	C	A	SNP	ZNF695	NM_020394.3	human	genbank	58_37c	-1	validated	missense	c.490	p.G164C	0.563	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNFX1	57169	genome.wustl.edu	37	20	47865218	47865218	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3474e56-8457-4f0b-8a2f-58fdd8f58607	6128514c-cc6c-4e40-9e59-55ba8f6f361c	20	47865218	47865218	G	A	SNP	ZNFX1	NM_021035.2	human	genbank	58_37c	-1	validated	missense	c.4343	p.S1448F	1.000	HMMPfam_zf-NF-X1	HMMPfam_zf-NF-X1,HMMSmart_SM00438,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
