Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC9	0	genome.wustl.edu	37	12	21953991	21953991	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	12	21953991	21953991	C	T	SNP	ABCC9	NM_020297.2	human	genbank	58_37c	-1	reviewed	missense	c.4637	p.R1546H	1.000	superfamily_SSF52540	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
BIRC6	0	genome.wustl.edu	37	2	32824940	32824940	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	2	32824940	32824940	C	T	SNP	BIRC6	NM_016252.3	human	genbank	58_37c	+1	reviewed	silent	c.13965	p.F4655	1.000	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like	HMMPfam_UQ_con,HMMSmart_SM00212,HMMPfam_BIR,HMMSmart_SM00238,superfamily_Galactose-binding domain-like,superfamily_UBC-like,superfamily_Inhibitor of apoptosis (IAP) repeat	-	no_errors
BRWD1	0	genome.wustl.edu	37	21	40670464	40670464	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	21	40670464	40670464	G	A	SNP	BRWD1	NM_018963.3	human	genbank	58_37c	-1	reviewed	silent	c.243	p.I81	1.000	NULL	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_BROMODOMAIN_1,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
C1orf66	0	genome.wustl.edu	37	1	156702141	156702141	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	1	156702141	156702141	G	T	SNP	C1orf66	NM_015997.3	human	genbank	58_37c	+1	validated	missense	c.305	p.R102L	1.000	NULL	superfamily_SSF53335	-	no_errors
CBWD1	0	genome.wustl.edu	37	9	163985	163985	+	Silent	SNP	A	A	G	rs148402215	byFrequency	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	9	163985	163985	A	G	SNP	CBWD1	NM_018491.3	human	genbank	58_37c	-1	validated	silent	c.483	p.Y161	0.999	HMMPfam_cobW,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_cobW,HMMPfam_CobW_C,superfamily_Hypothetical protein YjiA C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CD209	0	genome.wustl.edu	37	19	7810630	7810630	+	Silent	SNP	A	A	G	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	19	7810630	7810630	A	G	SNP	CD209	NM_021155.3	human	genbank	58_37c	-1	reviewed	silent	c.522	p.T174	0.008	NULL	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_errors
CHSY1	0	genome.wustl.edu	37	15	101718167	101718167	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	15	101718167	101718167	A	T	SNP	CHSY1	ENST00000254190	human	ensembl	58_37c	-1	known	missense	c.1835	p.L612Q	1.000	HMMPfam_CHGN,superfamily_SSF53448	HMMPfam_CHGN,superfamily_SSF53448	-	no_errors
CREBBP	0	genome.wustl.edu	37	16	3808953	3808953	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	16	3808953	3808953	G	A	SNP	CREBBP	NM_004380.2	human	genbank	58_37c	-1	reviewed	missense	c.3271	p.R1091C	1.000	HMMSmart_BROMO,superfamily_Bromodomain	HMMPfam_zf-TAZ,HMMSmart_ZnF_TAZ,superfamily_TAZ_finger,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_KIX,superfamily_KIX,superfamily_Nuc_recept_coact,HMMPfam_DUF906,HMMPfam_DUF902,HMMPfam_Creb_binding,PatternScan_BROMODOMAIN_1	-	no_errors
CUL3	0	genome.wustl.edu	37	2	225362533	225362533	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	2	225362533	225362533	G	A	SNP	CUL3	ENST00000451538	human	ensembl	58_37c	-1	known	missense	c.4	p.H2Y	1.000	HMMPfam_Cullin	"HMMPfam_Cullin,PatternScan_CULLIN_1,HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
DCLK1	0	genome.wustl.edu	37	13	36367617	36367617	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	13	36367617	36367617	C	T	SNP	DCLK1	NM_004734.3	human	genbank	58_37c	-1	validated	splice_site	c.1945-1	e15-1	1.000	-	-	-	no_errors
DSPP	0	genome.wustl.edu	37	4	88537249	88537249	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	4	88537249	88537249	T	C	SNP	DSPP	ENST00000432448	human	ensembl	58_37c	+1	known	missense	c.1835	p.V612A	0.924	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_OPT,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_CitMHS,HMMPfam_C4dic_mal_tran,HMMPfam_OPT,HMMPfam_TerC,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1,HMMPfam_DUF2339	-	no_start_codon:no_stop_codon
E2F4	0	genome.wustl.edu	37	16	67229794	67229796	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	16	67229794	67229796	CAG	-	DEL	E2F4	NM_001950.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.918_920	p.S310in_frame_del	0.995:0.995:0.995	NULL	HMMPfam_E2F_TDP,superfamily_SSF46785	-	no_errors
EFHC1	0	genome.wustl.edu	37	6	52329847	52329847	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	6	52329847	52329847	G	C	SNP	EFHC1	NM_018100.3	human	genbank	58_37c	+1	reviewed	missense	c.1071	p.E357D	0.839	HMMSmart_SM00676	HMMSmart_SM00676,HMMPfam_DUF1126,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
ENSG00000198938	0	genome.wustl.edu	37	MT	9977	9977	+	Silent	SNP	T	T	C	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	MT	9977	9977	T	C	SNP	ENSG00000198938	ENST00000362079	human	ensembl	58_37c	+1	known	silent	c.771	p.Y257	NULL	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000248695	0	genome.wustl.edu	37	17	34236485	34236485	+	RNA	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	17	34236485	34236485	G	A	SNP	ENSG00000248695	ENST00000506920	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors
ENSG00000249665	0	genome.wustl.edu	37	8	86786357	86786357	+	RNA	SNP	C	C	A	rs60098459	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	8	86786357	86786357	C	A	SNP	ENSG00000249665	ENST00000503540	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.034	-	-	-	no_errors
EZR	0	genome.wustl.edu	37	6	159197489	159197489	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	6	159197489	159197489	G	A	SNP	EZR	NM_001111077.1	human	genbank	58_37c	-1	reviewed	missense	c.746	p.S249F	1.000	HMMPfam_FERM_C,superfamily_SSF50729	superfamily_Moesin,HMMPfam_ERM,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF54236	-	no_errors
FAM124A	0	genome.wustl.edu	37	13	51855093	51855093	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	13	51855093	51855093	G	A	SNP	FAM124A	NM_145019.2	human	genbank	58_37c	+1	predicted	missense	c.1450	p.E484K	0.000	NULL	NULL	-	no_errors
FAM133B	0	genome.wustl.edu	37	7	92207495	92207495	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	7	92207495	92207495	C	G	SNP	FAM133B	NM_152789.2	human	genbank	58_37c	-1	validated	missense	c.278	p.R93T	1.000	NULL	NULL	-	no_errors
FAM58B	0	genome.wustl.edu	37	1	200182710	200182721	+	In_Frame_Del	DEL	GCCGGAGAGGAG	GCCGGAGAGGAG	-	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	GCCGGAGAGGAG	GCCGGAGAGGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	1	200182710	200182721	GCCGGAGAGGAG	-	DEL	FAM58B	NM_001105517.1	human	genbank	58_37c	+1	provisional	in_frame_del	c.19_30	p.EAGE10in_frame_del	0.002:0.000:0.001:0.001:0.003:0.002:0.001:0.000:0.000:0.001:0.000:0.001	NULL	HMMSmart_CYCLIN,PatternScan_CYCLINS,superfamily_Cyclin_like	-	no_errors
FDXACB1	0	genome.wustl.edu	37	11	111749772	111749772	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	11	111749772	111749772	G	A	SNP	FDXACB1	NM_138378.1	human	genbank	58_37c	-1	validated	nonsense	c.85	p.Q29*	0.000	HMMPfam_DUF2431	HMMPfam_FDX-ACB,superfamily_Anticodon-binding domain of PheRS,HMMPfam_DUF2431	-	no_errors
GIGYF2	0	genome.wustl.edu	37	2	233712227	233712229	+	In_Frame_Del	DEL	ACA	ACA	-	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	2	233712227	233712229	ACA	-	DEL	GIGYF2	NM_001103147.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3693_3695	p.Q1235in_frame_del	0.057:0.094:0.124	NULL	HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF	-	no_errors
GSC	0	genome.wustl.edu	37	14	95234888	95234888	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	14	95234888	95234888	C	T	SNP	GSC	NM_173849.2	human	genbank	58_37c	-1	reviewed	silent	c.714	p.S238	0.294	NULL	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
HJURP	0	genome.wustl.edu	37	2	234749835	234749835	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	2	234749835	234749835	G	A	SNP	HJURP	NM_018410.3	human	genbank	58_37c	-1	validated	missense	c.1591	p.H531Y	0.000	NULL	NULL	-	no_errors
HOMEZ	0	genome.wustl.edu	37	14	23745649	23745649	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	14	23745649	23745649	G	A	SNP	HOMEZ	NM_020834.2	human	genbank	58_37c	-1	validated	missense	c.788	p.P263L	0.629	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	no_errors
HOXB13	0	genome.wustl.edu	37	17	46805422	46805422	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	17	46805422	46805422	C	T	SNP	HOXB13	NM_006361.5	human	genbank	58_37c	-1	reviewed	nonsense	c.534	p.W178*	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
IGHV4-28	0	genome.wustl.edu	37	14	106780709	106780710	+	In_Frame_Ins	INS	-	-	AAC	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	14	106780709	106780710	-	AAC	INS	IGHV4-28	ENST00000390612	human	ensembl	58_37c	-1	known	in_frame_ins	c.155_154	p.N52in_frame_insSY	0.034:0.012	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	-	no_stop_codon
KIAA1529	0	genome.wustl.edu	37	9	100090372	100090372	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	9	100090372	100090372	A	G	SNP	KIAA1529	NM_020893.1	human	genbank	58_37c	+1	predicted	missense	c.2281	p.N761D	1.000	NULL	NULL	-	no_errors
LOC100288560	0	genome.wustl.edu	37	X	53852479	53852479	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	X	53852479	53852479	C	T	SNP	LOC100288560	XM_002344197.1	human	genbank	58_37c	+1	model	missense	c.98	p.S33L	0.002	NULL	HMMPfam_Ribosomal_S18,superfamily_Ribosomal protein S18	-	no_errors
LOC100293590	0	genome.wustl.edu	37	7	2952797	2952798	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	7	2952797	2952798	-	G	INS	LOC100293590	XM_002346049.1	human	genbank	58_37c	+1	model	frame_shift_ins	c.385_386	p.K130fs	0.002:0.004	NULL	NULL	-	no_start_codon:no_stop_codon
MAP3K4	0	genome.wustl.edu	37	6	161502011	161502011	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	6	161502011	161502011	C	T	SNP	MAP3K4	NM_005922.2	human	genbank	58_37c	+1	reviewed	silent	c.2196	p.F732	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MAP3K4	0	genome.wustl.edu	37	6	161519351	161519353	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	6	161519351	161519353	CTG	-	DEL	MAP3K4	NM_005922.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3566_3568	p.A1193in_frame_del	0.857:0.937:0.950	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MGLL	0	genome.wustl.edu	37	3	127439973	127439977	+	Frame_Shift_Del	DEL	TCTCT	TCTCT	-	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	TCTCT	TCTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	3	127439973	127439977	TCTCT	-	DEL	MGLL	NM_007283.5	human	genbank	58_37c	-1	validated	frame_shift_del	c.433_429	p.E144fs	1.000:1.000:1.000:1.000:0.022	HMMPfam_Abhydrolase_1,superfamily_SSF53474	HMMPfam_Abhydrolase_1,PatternScan_LIPASE_SER,superfamily_SSF53474	-	no_errors
MLH1	0	genome.wustl.edu	37	3	37089169	37089169	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	3	37089169	37089169	G	C	SNP	MLH1	NM_000249.3	human	genbank	58_37c	+1	reviewed	missense	c.1891	p.D631H	1.000	NULL	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase,HMMPfam_DNA_mis_repair,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal_S5_D2-typ_fold	-	no_errors
MYBPC2	0	genome.wustl.edu	37	19	50946815	50946815	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	19	50946815	50946815	G	A	SNP	MYBPC2	NM_004533.3	human	genbank	58_37c	+1	validated	missense	c.967	p.D323N	1.000	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726	-	no_errors
NACA2	0	genome.wustl.edu	37	17	59668409	59668409	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	17	59668409	59668409	G	A	SNP	NACA2	NM_199290.3	human	genbank	58_37c	-1	validated	nonsense	c.133	p.Q45*	1.000	NULL	HMMPfam_UBA,HMMPfam_NAC	-	no_errors
NGFRAP1	0	genome.wustl.edu	37	X	102632641	102632641	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	X	102632641	102632641	G	A	SNP	NGFRAP1	NM_206915.1	human	genbank	58_37c	+1	validated	missense	c.222	p.M74I	1.000	HMMPfam_BEX	HMMPfam_BEX	-	no_errors
ODZ2	0	genome.wustl.edu	37	5	167673880	167673880	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	5	167673880	167673880	C	T	SNP	ODZ2	NM_001122679.1	human	genbank	58_37c	+1	inferred	missense	c.5909	p.S1970F	1.000	superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_NHL,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_RHS_repeat,superfamily_Carboxypeptidase regulatory domain,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_NHL repeat,superfamily_EGF/Laminin	-	no_errors
PARP12	0	genome.wustl.edu	37	7	139756696	139756696	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	7	139756696	139756696	G	A	SNP	PARP12	NM_022750.2	human	genbank	58_37c	-1	provisional	silent	c.720	p.P240	0.012	NULL	HMMPfam_zf-CCCH,HMMSmart_SM00356,HMMPfam_PARP,superfamily_ADP-ribosylation,superfamily_CCCH zinc finger	-	no_errors
PDE1C	0	genome.wustl.edu	37	7	31864536	31864536	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	7	31864536	31864536	T	C	SNP	PDE1C	NM_005020.1	human	genbank	58_37c	-1	provisional	missense	c.1351	p.S451G	0.997	HMMPfam_PDEase_I,superfamily_SSF109604	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_HDc,HMMPfam_PDEase_I_N,superfamily_SSF109604	-	no_errors
PDS5A	0	genome.wustl.edu	37	4	39846302	39846302	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	4	39846302	39846302	C	T	SNP	PDS5A	NM_001100399.1	human	genbank	58_37c	-1	reviewed	silent	c.3522	p.L1174	1.000	NULL	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
PHLDA1	0	genome.wustl.edu	37	12	76424938	76424940	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	12	76424938	76424940	TGC	-	DEL	PHLDA1	NM_007350.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.584_582	p.Q198in_frame_del	0.146:0.153:0.155	HMMSmart_PH,superfamily_SSF50729	HMMSmart_PH,superfamily_SSF50729	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PREX1	0	genome.wustl.edu	37	20	47254270	47254270	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	20	47254270	47254270	G	A	SNP	PREX1	NM_020820.3	human	genbank	58_37c	-1	reviewed	silent	c.3925	p.L1309	0.995	NULL	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_DEP,HMMSmart_SM00049,PatternScan_DH_1,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,superfamily_PH domain-like"	-	no_errors
PRG4	0	genome.wustl.edu	37	1	186276542	186276544	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	1	186276542	186276544	CTC	-	DEL	PRG4	NM_005807.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1691_1693	p.P565in_frame_del	0.000:0.001:0.001	NULL	superfamily_Hemopexin-like domain,HMMPfam_Somatomedin_B,HMMSmart_SM00201,PatternScan_SMB_1,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_SM00120,superfamily_Somatomedin B domain	-	no_errors
RECK	0	genome.wustl.edu	37	9	36063860	36063860	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	9	36063860	36063860	C	T	SNP	RECK	NM_021111.2	human	genbank	58_37c	+1	reviewed	nonsense	c.340	p.R114*	1.000	NULL	HMMSmart_SM00280,PatternScan_KAZAL,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors	-	no_errors
SDK2	0	genome.wustl.edu	37	17	71427712	71427712	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	17	71427712	71427712	G	C	SNP	SDK2	NM_001144952.1	human	genbank	58_37c	-1	provisional	missense	c.1409	p.A470G	0.985	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
SLC5A11	0	genome.wustl.edu	37	16	24869995	24869995	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	16	24869995	24869995	C	A	SNP	SLC5A11	NM_052944.2	human	genbank	58_37c	+1	provisional	missense	c.31	p.P11T	0.008	NULL	HMMPfam_SSF	-	no_errors
SNTB1	0	genome.wustl.edu	37	8	121644761	121644761	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	8	121644761	121644761	C	T	SNP	SNTB1	NM_021021.3	human	genbank	58_37c	-1	reviewed	missense	c.919	p.E307K	0.989	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
SPTBN5	0	genome.wustl.edu	37	15	42166578	42166578	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	15	42166578	42166578	G	A	SNP	SPTBN5	NM_016642.2	human	genbank	58_37c	-1	validated	missense	c.4496	p.S1499F	0.091	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like	-	no_errors
ST7	0	genome.wustl.edu	37	7	116863013	116863013	+	Silent	SNP	A	A	G	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	7	116863013	116863013	A	G	SNP	ST7	NM_021908.2	human	genbank	58_37c	+1	reviewed	silent	c.1737	p.Q579	0.047	NULL	HMMPfam_ST7	-	no_errors
STOX2	0	genome.wustl.edu	37	4	184922544	184922544	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	4	184922544	184922544	T	A	SNP	STOX2	NM_020225.1	human	genbank	58_37c	+1	provisional	missense	c.233	p.L78H	1.000	HMMPfam_Stork_head	HMMPfam_Stork_head	-	no_errors
TBC1D17	0	genome.wustl.edu	37	19	50381800	50381800	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	19	50381800	50381800	G	A	SNP	TBC1D17	NM_024682.2	human	genbank	58_37c	+1	validated	missense	c.166	p.D56N	1.000	NULL	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
TBX18	0	genome.wustl.edu	37	6	85466569	85466569	+	Silent	SNP	C	C	A	rs150088516	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	6	85466569	85466569	C	A	SNP	TBX18	NM_001080508.1	human	genbank	58_37c	-1	provisional	silent	c.618	p.S206	0.839	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
TCF20	0	genome.wustl.edu	37	22	42608681	42608681	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	22	42608681	42608681	G	A	SNP	TCF20	NM_005650.1	human	genbank	58_37c	-1	reviewed	silent	c.2631	p.V877	1.000	NULL	HMMSmart_SM00249	-	no_errors
TSPYL1	0	genome.wustl.edu	37	6	116600543	116600543	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	6	116600543	116600543	C	T	SNP	TSPYL1	NM_003309.3	human	genbank	58_37c	-1	reviewed	missense	c.451	p.E151K	0.000	NULL	HMMPfam_NAP	-	no_errors
TSPYL2	0	genome.wustl.edu	37	X	53115502	53115503	+	Frame_Shift_Ins	INS	-	-	CC	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	X	53115502	53115503	-	CC	INS	TSPYL2	ENST00000439933	human	ensembl	58_37c	+1	known	frame_shift_ins	c.848_849	p.H286fs	0.002:0.001	NULL	NULL	-	no_start_codon
USH2A	0	genome.wustl.edu	37	1	216108090	216108090	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	1	216108090	216108090	C	T	SNP	USH2A	NM_206933.2	human	genbank	58_37c	-1	reviewed	missense	c.7168	p.G2390R	0.001	HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
WFDC5	0	genome.wustl.edu	37	20	43739300	43739300	+	Missense_Mutation	SNP	G	G	A	rs142074298	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	20	43739300	43739300	G	A	SNP	WFDC5	NM_145652.2	human	genbank	58_37c	-1	reviewed	missense	c.202	p.R68C	1.000	HMMPfam_WAP,HMMSmart_SM00217,superfamily_Elafin-like	HMMPfam_WAP,HMMSmart_SM00217,superfamily_Elafin-like,PatternScan_4_DISULFIDE_CORE	-	no_errors
ZFAND2B	0	genome.wustl.edu	37	2	220073995	220073995	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	2	220073995	220073995	C	T	SNP	ZFAND2B	ENST00000425849	human	ensembl	58_37c	+1	known	nonsense	c.109	p.Q37*	0.997	NULL	HMMPfam_UIM,HMMSmart_SM00726	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZNF442	0	genome.wustl.edu	37	19	12461860	12461860	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	19	12461860	12461860	C	T	SNP	ZNF442	NM_030824.2	human	genbank	58_37c	-1	validated	missense	c.539	p.R180H	0.005	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF525	0	genome.wustl.edu	37	19	53885220	53885220	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	19	53885220	53885220	G	T	SNP	ZNF525	ENST00000474037	human	ensembl	58_37c	+1	known	missense	c.1388	p.G463V	0.995	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF585A	0	genome.wustl.edu	37	19	37643456	37643456	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-C8-A1HE-01A-11D-A188-09	TCGA-C8-A1HE-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8314bada-5bd3-4cd2-b308-4cb2db64de94	73d1406e-7588-4ba8-9900-8ff69d65b2bd	19	37643456	37643456	A	C	SNP	ZNF585A	NM_152655.2	human	genbank	58_37c	-1	validated	missense	c.1180	p.S394A	0.001	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
