Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
PRAMEF10	343071	broad.mit.edu	37	1	12954578	12954578	+	Silent	SNP	A	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:12954578A>G	uc001auo.2	-	3	778	c.705T>C	c.(703-705)CGT>CGC	p.R235R		NM_001039361	NP_001034450	O60809	PRA10_HUMAN	PRAME family member 10	235											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AAAAGAGTTCACGAAGATTGC	0.488													3	130					0	0	0	0
EPHA8	2046	broad.mit.edu	37	1	22923821	22923821	+	Silent	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:22923821C>T	uc001bfx.1	+	10	1907	c.1782C>T	c.(1780-1782)TTC>TTT	p.F594F		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	594	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CACCTGTCTTCCTGCCTCTGC	0.657													15	48					0	0	0	0
ZBTB8A	653121	broad.mit.edu	37	1	33059296	33059296	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:33059296C>T	uc001bvn.2	+	3	1249	c.764C>T	c.(763-765)TCT>TTT	p.S255F	ZBTB8A_uc001bvk.2_RNA|ZBTB8A_uc001bvm.2_Missense_Mutation_p.S255F	NM_001040441	NP_001035531	Q96BR9	ZBT8A_HUMAN	zinc finger and BTB domain containing 8A	255					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAAATGGACTCTACTCCTGTT	0.438													16	45					0	0	0	0
KIAA1522	57648	broad.mit.edu	37	1	33235677	33235677	+	Silent	SNP	C	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:33235677C>G	uc001bvv.2	+	6	856	c.720C>G	c.(718-720)GTC>GTG	p.V240V	KIAA1522_uc001bvu.1_Silent_p.V299V|KIAA1522_uc010ohm.1_Silent_p.V251V|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	240											0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				TTGACCGTGTCTACCGGGATG	0.682													19	47					0	0	0	0
MFSD2A	84879	broad.mit.edu	37	1	40424394	40424394	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:40424394A>G	uc001cev.2	+	3	470	c.289A>G	c.(289-291)ATC>GTC	p.I97V	MFSD2A_uc010ojb.1_Missense_Mutation_p.I47V|MFSD2A_uc001ceu.2_Missense_Mutation_p.I84V|MFSD2A_uc010ojc.1_Intron|MFSD2A_uc009vvy.2_RNA	NM_001136493	NP_001129965	Q8NA29	MFS2A_HUMAN	major facilitator superfamily domain containing	97	Helical; (Potential).				transmembrane transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)|pancreas(1)	2						CTCTGCCTCCATCATCCTGTT	0.582													50	152					0	0	0	0
CPT2	1376	broad.mit.edu	37	1	53675843	53675843	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:53675843T>A	uc001cvb.3	+	4	1012	c.497T>A	c.(496-498)CTC>CAC	p.L166H		NM_000098	NP_000089	P23786	CPT2_HUMAN	carnitine O-palmitoyltransferase precursor	166	Mitochondrial matrix (By similarity).				carnitine shuttle|fatty acid beta-oxidation|regulation of fatty acid oxidation	mitochondrial inner membrane	carnitine O-palmitoyltransferase activity				0					L-Carnitine(DB00583)|Perhexiline(DB01074)	CTGAAGACACTCCGGGCTGGC	0.493													21	51					0	0	0	0
IGSF3	3321	broad.mit.edu	37	1	117142910	117142910	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:117142910G>C	uc001egr.1	-	7	2387	c.1682C>G	c.(1681-1683)TCC>TGC	p.S561C	IGSF3_uc001egq.1_Missense_Mutation_p.S581C|IGSF3_uc001egs.1_Missense_Mutation_p.S234C	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	561	Ig-like C2-type 5.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		CAAGTCAAAGGAGTCGCTGTA	0.592													18	68					0	0	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144859816	144859816	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:144859816T>C	uc001elw.3	-	38	6559	c.6268A>G	c.(6268-6270)ATT>GTT	p.I2090V	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.I1984V|PDE4DIP_uc001elv.3_Missense_Mutation_p.I1097V	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	2090					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TTCTGGTTAATGGAGGAGGGG	0.577			T	PDGFRB	MPD								7	98					0	0	0	0
NBPF10	100132406	broad.mit.edu	37	1	145296440	145296440	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:145296440G>A	uc001end.3	+	3	397	c.362G>A	c.(361-363)CGC>CAC	p.R121H	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Missense_Mutation_p.R121H|NBPF10_uc001emq.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	121											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GATGCCTCCCGCTCATTGTAT	0.562													6	290					0	0	0	0
IGSF9	57549	broad.mit.edu	37	1	159907550	159907550	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:159907550C>T	uc001fur.2	-	4	524	c.326G>A	c.(325-327)CGC>CAC	p.R109H	IGSF9_uc001fuq.2_Missense_Mutation_p.R109H	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	109	Ig-like 1.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			GAAGAACACGCGGCACTCGTA	0.602													18	60					0	0	0	0
DCAF6	55827	broad.mit.edu	37	1	168014380	168014380	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:168014380G>A	uc001gew.2	+	14	2184	c.1942G>A	c.(1942-1944)GAC>AAC	p.D648N	DCAF6_uc001gev.2_Missense_Mutation_p.D668N|DCAF6_uc001gex.2_Missense_Mutation_p.D725N|DCAF6_uc010plk.1_Missense_Mutation_p.D694N|DCAF6_uc001gey.2_Missense_Mutation_p.D521N|DCAF6_uc001gez.2_5'UTR	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	648					positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						ATCCACCAGGGACTCTGCTCT	0.483													13	28					0	0	0	0
CACNA1E	777	broad.mit.edu	37	1	181702754	181702754	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:181702754C>T	uc001gow.2	+	21	3295	c.3130C>T	c.(3130-3132)CGG>TGG	p.R1044W	CACNA1E_uc009wxs.2_Missense_Mutation_p.R932W|CACNA1E_uc001gox.1_Missense_Mutation_p.R270W|CACNA1E_uc009wxt.2_Missense_Mutation_p.R270W	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1044	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AGACATGGGCCGGGTCATCAG	0.647													6	17					0	0	0	0
KCNT2	343450	broad.mit.edu	37	1	196309633	196309633	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:196309633G>A	uc001gtd.1	-	16	1681	c.1621C>T	c.(1621-1623)CGA>TGA	p.R541*	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Nonsense_Mutation_p.R491*|KCNT2_uc001gtf.1_Nonsense_Mutation_p.R541*|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Nonsense_Mutation_p.R541*|KCNT2_uc001gth.1_Nonsense_Mutation_p.R62*	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	541	Cytoplasmic (Potential).|RCK N-terminal.					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						ATAATGTATCGAGGACCTGGA	0.323													21	53					0	0	0	0
FAM71A	149647	broad.mit.edu	37	1	212799632	212799632	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:212799632T>G	uc001hjk.2	+	1	1817	c.1413T>G	c.(1411-1413)GAT>GAG	p.D471E	uc010pth.1_RNA	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	471										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		CCAATAGAGATGACAAAAAGG	0.557													20	44					0	0	0	0
MARK1	4139	broad.mit.edu	37	1	220805593	220805593	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:220805593A>G	uc001hmn.3	+	11	1657	c.1060A>G	c.(1060-1062)ATA>GTA	p.I354V	MARK1_uc009xdw.2_Missense_Mutation_p.I354V|MARK1_uc010pun.1_Missense_Mutation_p.I354V|MARK1_uc001hmm.3_Missense_Mutation_p.I332V	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	354	UBA.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		TGATGCCTTAATAAATCAGAA	0.299													70	218					0	0	0	0
SNAP47	116841	broad.mit.edu	37	1	227935613	227935613	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:227935613A>T	uc001hrf.2	+	2	725	c.311A>T	c.(310-312)GAG>GTG	p.E104V	SNAP47_uc001hqz.2_Missense_Mutation_p.E59V|SNAP47_uc001hra.2_Intron|SNAP47_uc001hrd.2_Missense_Mutation_p.E104V|SNAP47_uc001hre.2_Intron|SNAP47_uc001hrg.1_Missense_Mutation_p.E59V	NM_053052	NP_444280	Q5SQN1	SNP47_HUMAN	synaptosomal-associated protein, 47kDa	104						endomembrane system|membrane|perinuclear region of cytoplasm				ovary(1)	1						ATCAAGAAGGAGGCTTCACAT	0.527													20	48					0	0	0	0
EXO1	9156	broad.mit.edu	37	1	242020736	242020736	+	Silent	SNP	A	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:242020736A>G	uc001hzh.2	+	7	1035	c.495A>G	c.(493-495)CAA>CAG	p.Q165Q	EXO1_uc001hzi.2_Silent_p.Q165Q|EXO1_uc001hzj.2_Silent_p.Q165Q|EXO1_uc009xgq.2_Silent_p.Q165Q	NM_130398	NP_569082	Q9UQ84	EXO1_HUMAN	exonuclease 1 isoform b	165	I-domain.|Interaction with MSH3.				meiosis|mismatch repair	nucleus	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity|flap endonuclease activity|metal ion binding|protein binding|protein binding|ribonuclease H activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity			ovary(2)|lung(2)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;0.0555)	OV - Ovarian serous cystadenocarcinoma(106;0.0107)			GAATTGTGCAAGCCATAATTA	0.458								Direct_reversal_of_damage|Editing_and_processing_nucleases					20	59					0	0	0	0
OR2L13	284521	broad.mit.edu	37	1	248262997	248262997	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:248262997C>T	uc001ids.2	+	3	657	c.320C>T	c.(319-321)GCG>GTG	p.A107V		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding	p.A107V(1)		central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			CTGACCATGGCGTGTTCTGAA	0.517													66	224					0	0	0	0
MRC1	4360	broad.mit.edu	37	10	17875801	17875801	+	Silent	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr10:17875801G>A	uc001ipk.2	+	4	868	c.765G>A	c.(763-765)CTG>CTA	p.L255L		NM_002438	NP_002429	P22897	MRC1_HUMAN	mannose receptor C type 1 precursor	255	C-type lectin 1.|Extracellular (Potential).				receptor-mediated endocytosis	endosome membrane|integral to plasma membrane	mannose binding|receptor activity				0						CTGAGCTCCTGAGCATCACAG	0.428													34	43					0	0	0	0
TMEM72	643236	broad.mit.edu	37	10	45430152	45430152	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr10:45430152G>A	uc001jbn.2	+	5	595	c.398G>A	c.(397-399)CGG>CAG	p.R133Q	uc001jbk.1_Intron|uc001jbl.2_Intron|TMEM72_uc009xmm.1_Missense_Mutation_p.R15Q	NM_001123376	NP_001116848	A0PK05	TMM72_HUMAN	transmembrane protein 72	133						integral to membrane					0						CTGAGCAAGCGGAAGAAGAGG	0.602													25	79					0	0	0	0
CHAT	1103	broad.mit.edu	37	10	50833611	50833611	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr10:50833611T>C	uc001jhz.2	+	6	998	c.845T>C	c.(844-846)CTC>CCC	p.L282P	CHAT_uc001jhv.1_Missense_Mutation_p.L164P|CHAT_uc001jhx.1_Missense_Mutation_p.L164P|CHAT_uc001jhy.1_Missense_Mutation_p.L164P|CHAT_uc001jia.2_Missense_Mutation_p.L164P|CHAT_uc010qgs.1_Missense_Mutation_p.L164P	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	282					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	TCCTACCGGCTCCCCGGCCAT	0.592													10	7					0	0	0	0
ASAH2B	653308	broad.mit.edu	37	10	52502706	52502706	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr10:52502706A>G	uc001jjg.2	+	2	87	c.22A>G	c.(22-24)ATG>GTG	p.M8V	ASAH2B_uc010qhm.1_5'UTR	NM_001079516	NP_001072984	Q9NR71	ASAH2_HUMAN	N-acylsphingosine amidohydrolase (non-lysosomal	Error:Variant_position_missing_in_Q9NR71_after_alignment					apoptosis|ceramide metabolic process|signal transduction	integral to membrane|mitochondrion|plasma membrane	ceramidase activity				0						TCGACAATTTATGGACCGCAC	0.373													58	176					0	0	0	0
SH2D4B	387694	broad.mit.edu	37	10	82403807	82403807	+	Silent	SNP	A	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr10:82403807A>C	uc001kck.1	+	7	1474	c.1044A>C	c.(1042-1044)GGA>GGC	p.G348G	SH2D4B_uc001kcl.1_Silent_p.G300G|SH2D4B_uc001kcm.1_Missense_Mutation_p.D169A|SH2D4B_uc001kcn.1_RNA	NM_207372	NP_997255	Q5SQS7	SH24B_HUMAN	SH2 domain containing 4B isoform 1	Error:Variant_position_missing_in_Q5SQS7_after_alignment											0			Colorectal(32;0.229)			GGACAGAGGGACAGCCCACCA	0.373													9	36					0	0	0	0
CNNM2	54805	broad.mit.edu	37	10	104835934	104835934	+	Silent	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr10:104835934G>A	uc001kwm.2	+	7	2449	c.2325G>A	c.(2323-2325)CTG>CTA	p.L775L	CNNM2_uc001kwn.2_Silent_p.L753L	NM_017649	NP_060119	Q9H8M5	CNNM2_HUMAN	cyclin M2 isoform 1	775					ion transport	integral to membrane				ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.103)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;7.89e-09)|all cancers(201;1.82e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		CACCAACACTGGGGAGCAGCA	0.527													3	12					0	0	0	0
LOC399815	399815	broad.mit.edu	37	10	124643344	124643344	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr10:124643344C>T	uc001lgu.3	+	6	948	c.50C>T	c.(49-51)TCA>TTA	p.S17L	LOC399815_uc010qua.1_Intron					RecName: Full=Putative uncharacterized C10orf88-like protein;												0						GCTGTAAAATCAAGAATAGAA	0.413													6	2					0	0	0	0
DOCK1	1793	broad.mit.edu	37	10	129216755	129216755	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr10:129216755A>T	uc001ljt.2	+	45	4643	c.4579A>T	c.(4579-4581)AAC>TAC	p.N1527Y	DOCK1_uc010qun.1_Missense_Mutation_p.N1548Y|DOCK1_uc009yaq.2_Missense_Mutation_p.N522Y	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1527	DHR-2.				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		CATGCTCCTGAACGGCATCGT	0.602													7	26					0	0	0	0
KRTAP5-3	387266	broad.mit.edu	37	11	1629441	1629441	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr11:1629441A>G	uc001ltw.1	-	1	253	c.175T>C	c.(175-177)TCC>CCC	p.S59P		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	59	11 X 4 AA repeats of C-C-X-P.					keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		CCCCCACAGGAGCCACAGCTG	0.677													72	193					0	0	0	0
DCHS1	8642	broad.mit.edu	37	11	6653621	6653621	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr11:6653621G>T	uc001mem.1	-	6	3532	c.3122C>A	c.(3121-3123)GCA>GAA	p.A1041E		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	1041	Cadherin 10.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGGCTACTTGCTCCCTCTGC	0.597													15	38					2.23348e-06	2.35292e-06	1	0
SLC15A3	51296	broad.mit.edu	37	11	60709581	60709581	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr11:60709581G>C	uc001nqn.2	-	4	1267	c.1033C>G	c.(1033-1035)CAC>GAC	p.H345D	SLC15A3_uc001nqo.2_Missense_Mutation_p.H345D	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	345					oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						TTTGGGATGTGGAGGTGAAGA	0.577													33	111					0	0	0	0
SLC6A13	6540	broad.mit.edu	37	12	330578	330578	+	Silent	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr12:330578G>A	uc001qic.1	-	14	1703	c.1650C>T	c.(1648-1650)CTC>CTT	p.L550L	SLC6A13_uc009zdj.1_Silent_p.L540L|SLC6A13_uc010sdl.1_Silent_p.L458L	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	550	Cytoplasmic (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			CGAGTCTGTAGAGGCTCCAGG	0.632													8	15					0	0	0	0
TAS2R7	50837	broad.mit.edu	37	12	10954990	10954990	+	Silent	SNP	G	A	A	rs141765045		TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr12:10954990G>A	uc001qyv.2	-	1	237	c.180C>T	c.(178-180)TGC>TGT	p.C60C		NM_023919	NP_076408	Q9NYW3	TA2R7_HUMAN	taste receptor, type 2, member 7	60	Helical; Name=2; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			skin(1)	1						ATAGTATTACGCACAATAGAC	0.378													26	64					0	0	0	0
Unknown	0	broad.mit.edu	37	12	80730728	80730728	+	IGR	SNP	A	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr12:80730728A>C								PPP1R12A (401493 upstream) : PTPRQ (107398 downstream)																							TTGTTTTAAGAAGTTAAATGT	0.294													3	10					0	0	0	0
CEP290	80184	broad.mit.edu	37	12	88480186	88480186	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr12:88480186T>C	uc001tar.2	-	33	4628	c.4284A>G	c.(4282-4284)ATA>ATG	p.I1428M	CEP290_uc001taq.2_Missense_Mutation_p.I488M	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	1428	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						CCGCATTTAGTATTTCATTTT	0.363													5	17					0	0	0	0
UTP20	27340	broad.mit.edu	37	12	101748816	101748816	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr12:101748816A>G	uc001tia.1	+	41	5470	c.5314A>G	c.(5314-5316)ATA>GTA	p.I1772V		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	1772					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						CAAGGAAGAAATAGAGAGAAC	0.433													8	47					0	0	0	0
GNPTAB	79158	broad.mit.edu	37	12	102153816	102153816	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr12:102153816G>A	uc001tit.2	-	16	3420	c.3241C>T	c.(3241-3243)CCC>TCC	p.P1081S		NM_024312	NP_077288	Q3T906	GNPTA_HUMAN	N-acetylglucosamine-1-phosphate transferase	1081					cell differentiation	Golgi membrane|integral to membrane|nucleus	metal ion binding|transcription factor binding|UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity			ovary(1)|skin(1)	2						ACCAGGTTGGGATCATAGTAG	0.388													15	47					0	0	0	0
TRPV4	59341	broad.mit.edu	37	12	110240837	110240837	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr12:110240837C>A	uc001tpj.1	-	3	766	c.671G>T	c.(670-672)AGG>ATG	p.R224M	TRPV4_uc001tpg.1_Missense_Mutation_p.R190M|TRPV4_uc001tph.1_Missense_Mutation_p.R224M|TRPV4_uc001tpi.1_Missense_Mutation_p.R224M|TRPV4_uc001tpk.1_Missense_Mutation_p.R224L|TRPV4_uc001tpl.1_Missense_Mutation_p.R224L	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	224	Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						AATGAACTCCCTCATGTTGCC	0.632													15	29					4.7546e-09	5.1749e-09	1	0
SPPL3	121665	broad.mit.edu	37	12	121206162	121206162	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr12:121206162G>C	uc001tzd.2	-	8	1220	c.739C>G	c.(739-741)CGC>GGC	p.R247G	SPPL3_uc009zwz.2_Missense_Mutation_p.R240G|SPPL3_uc001tzc.2_Missense_Mutation_p.R77G	NM_139015	NP_620584	Q8TCT6	PSL4_HUMAN	signal peptide peptidase 3	248						integral to membrane	aspartic-type endopeptidase activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					AGAGACAGGCGAGGAACATCA	0.562													26	99					0	0	0	0
WASF3	10810	broad.mit.edu	37	13	27257005	27257005	+	Silent	SNP	G	A	A	rs148684191		TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr13:27257005G>A	uc001uqv.2	+	9	1470	c.1245G>A	c.(1243-1245)TCG>TCA	p.S415S	WASF3_uc001uqw.2_Silent_p.S412S	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	415					actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		CTTCTCTTTCGTCCTCCCCAA	0.677													27	91					0	0	0	0
LOC647288	647288	broad.mit.edu	37	13	75814354	75814354	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr13:75814354C>G	uc010ths.1	-	1	164	c.123G>C	c.(121-123)TGG>TGC	p.W41C		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						CCACCAGTTCCCATGGAAAAC	0.488													3	95					0	0	0	0
DOCK9	23348	broad.mit.edu	37	13	99476709	99476709	+	Silent	SNP	G	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr13:99476709G>T	uc001vnt.2	-	46	5131	c.5076C>A	c.(5074-5076)ATC>ATA	p.I1692I	DOCK9_uc001vnw.2_Silent_p.I1691I|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Silent_p.I1669I|DOCK9_uc001vnq.2_Silent_p.I241I|DOCK9_uc001vnr.2_Silent_p.I335I|DOCK9_uc010tin.1_Silent_p.I312I|DOCK9_uc001vns.2_Silent_p.I241I|DOCK9_uc010tio.1_Silent_p.I361I|DOCK9_uc010tip.1_Silent_p.I402I|DOCK9_uc001vnu.1_Silent_p.I241I|DOCK9_uc010tiq.1_Silent_p.I647I	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	1692	DHR-2.				blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CCTCCTCGTCGATGTTTGGGG	0.537													32	111					1.36161e-19	1.56864e-19	1	0
C13orf39	196541	broad.mit.edu	37	13	103343240	103343240	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr13:103343240C>T	uc001vpj.2	-	2	211	c.205G>A	c.(205-207)GAG>AAG	p.E69K	C13orf39_uc001vpk.2_Missense_Mutation_p.E69K	NM_001010977	NP_001010977	Q5VZV1	MT21C_HUMAN	hypothetical protein LOC196541	69							methyltransferase activity				0						CGATAATGCTCCTGAGTGTAG	0.448													25	56					0	0	0	0
MYH6	4624	broad.mit.edu	37	14	23862217	23862217	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr14:23862217C>T	uc001wjv.2	-	24	3222	c.3155G>A	c.(3154-3156)CGA>CAA	p.R1052Q		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1052	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CCGCTTTGCTCGCTCCAGGTC	0.488													31	73					0	0	0	0
RTF1	23168	broad.mit.edu	37	15	41750014	41750014	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr15:41750014A>G	uc001zny.2	+	4	614	c.602A>G	c.(601-603)GAG>GGG	p.E201G		NM_015138	NP_055953	Q92541	RTF1_HUMAN	Paf1/RNA polymerase II complex component	201	Glu-rich.				histone modification|regulation of transcription, DNA-dependent|transcription initiation, DNA-dependent	nucleoplasm	protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(109;1.79e-19)|all_epithelial(112;8.18e-17)|Lung NSC(122;3.16e-11)|all_lung(180;8.14e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;1.15e-16)|GBM - Glioblastoma multiforme(113;1.81e-06)|BRCA - Breast invasive adenocarcinoma(123;0.119)		CAGATGACAGAGAAAGAGAGA	0.517													27	71					0	0	0	0
IGDCC3	9543	broad.mit.edu	37	15	65621833	65621833	+	Silent	SNP	T	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr15:65621833T>G	uc002aos.2	-	13	2352	c.2100A>C	c.(2098-2100)GGA>GGC	p.G700G	IGDCC3_uc002aor.1_5'UTR	NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	700	Cytoplasmic (Potential).									ovary(3)	3						GGCCCCGCTGTCCCCGTCTCG	0.647													33	59					0	0	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	82635117	82635117	+	RNA	SNP	T	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr15:82635117T>C	uc002bgx.2	-	5		c.463A>G						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						TTTTTCAATTTCTTGACCCGC	0.383													4	9					0	0	0	0
ACAN	176	broad.mit.edu	37	15	89398654	89398654	+	Silent	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr15:89398654C>T	uc010upo.1	+	12	3212	c.2838C>T	c.(2836-2838)GGC>GGT	p.G946G	ACAN_uc010upp.1_Silent_p.G946G|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	946					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TCCTAGAGGGCTCTGCCTCTG	0.557													21	63					0	0	0	0
FES	2242	broad.mit.edu	37	15	91433462	91433462	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr15:91433462C>T	uc002bpv.2	+	9	1286	c.1190C>T	c.(1189-1191)CCG>CTG	p.P397L	FES_uc010uqj.1_Missense_Mutation_p.P339L|FES_uc010uqk.1_Missense_Mutation_p.P379L|FES_uc002bpw.2_RNA|FES_uc010bny.2_Missense_Mutation_p.P339L|FES_uc002bpx.2_Missense_Mutation_p.P397L|FES_uc002bpy.2_Missense_Mutation_p.P339L	NM_002005	NP_001996	P07332	FES_HUMAN	feline sarcoma oncogene isoform 1	397					axon guidance|cell proliferation|peptidyl-tyrosine phosphorylation	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			GGCGAGCCCCCGCCTGTGCTG	0.726													11	22					0	0	0	0
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr15:102515299G>A	uc002cdi.2	+	9	1943	c.523G>A	c.(523-525)GGC>AGC	p.G175S	WASH3P_uc002cdl.2_Missense_Mutation_p.G175S|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.G175S|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						TGGGGGCATCGGCAAGGCCAA	0.652													3	19					0	0	0	0
RAB40C	57799	broad.mit.edu	37	16	640410	640410	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr16:640410A>G	uc002chr.2	+	1	235	c.119A>G	c.(118-120)GAG>GGG	p.E40G	RAB40C_uc002chq.2_Missense_Mutation_p.E40G	NM_021168	NP_066991	Q96S21	RB40C_HUMAN	RAB40C, member RAS oncogene family	40					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0		Hepatocellular(780;0.0218)				GGCGCGGCAGAGTCCCCGTAC	0.612													7	24					0	0	0	0
PTX4	390667	broad.mit.edu	37	16	1538463	1538463	+	Silent	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr16:1538463C>T	uc010uvf.1	-	1	6	c.6G>A	c.(4-6)GGG>GGA	p.G2G		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	Error:Variant_position_missing_in_Q96A99_after_alignment						extracellular region	metal ion binding				0						AGTTTCCACTCCCCATGACAC	0.652													3	33					0	0	0	0
CREBBP	1387	broad.mit.edu	37	16	3781253	3781253	+	Silent	SNP	G	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr16:3781253G>C	uc002cvv.2	-	30	5316	c.5112C>G	c.(5110-5112)GTC>GTG	p.V1704V	CREBBP_uc002cvw.2_Silent_p.V1666V	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	1704	Interaction with TRERF1.|ZZ-type.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TGCAGGTGTAGACAAAGCGGT	0.662			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				13	57					0	0	0	0
CLEC16A	23274	broad.mit.edu	37	16	11114117	11114117	+	Silent	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr16:11114117G>A	uc002dao.2	+	12	1601	c.1371G>A	c.(1369-1371)GAG>GAA	p.E457E	CLEC16A_uc002dan.3_Silent_p.E439E	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	457								p.0?(1)		ovary(1)|central_nervous_system(1)	2						CCGTGCAGGAGCAGAACACCA	0.597													11	28					0	0	0	0
LOC81691	81691	broad.mit.edu	37	16	20856094	20856094	+	Silent	SNP	C	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr16:20856094C>G	uc002dhv.2	+	17	2126	c.1863C>G	c.(1861-1863)CTC>CTG	p.L621L	ERI2_uc002dht.3_Intron|LOC81691_uc002dhx.2_Silent_p.L590L|LOC81691_uc002dhw.2_Silent_p.L364L|LOC81691_uc002dhy.3_Silent_p.L621L	NM_030941	NP_112203	Q96IC2	REXON_HUMAN	exonuclease NEF-sp isoform 1	621	RRM 2.					nucleolus	exonuclease activity|nucleotide binding|RNA binding			ovary(1)|kidney(1)	2						AGCCCCGCCTCTTTCTTGGCC	0.428													29	82					0	0	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25258086	25258086	+	Silent	SNP	G	A	A	rs149172025	by1000genomes	TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr16:25258086G>A	uc002dod.3	-	5	1838	c.1431C>T	c.(1429-1431)ATC>ATT	p.I477I	ZKSCAN2_uc010vcl.1_Silent_p.I273I|ZKSCAN2_uc002doe.2_Silent_p.I477I	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	477					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		GGATAAATTCGATGCCTATTT	0.448													28	92					0	0	0	0
SETD1A	9739	broad.mit.edu	37	16	30980949	30980949	+	Silent	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr16:30980949G>A	uc002ead.1	+	12	3641	c.2955G>A	c.(2953-2955)GAG>GAA	p.E985E		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	985	Glu-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						AGGAAGATGAGGAAGATGAAG	0.507													7	31					0	0	0	0
TAF1C	9013	broad.mit.edu	37	16	84217036	84217036	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr16:84217036C>T	uc002fhn.2	-	4	526	c.298G>A	c.(298-300)GTG>ATG	p.V100M	TAF1C_uc002fhm.2_Missense_Mutation_p.V33M|TAF1C_uc010vnx.1_Missense_Mutation_p.V100M|TAF1C_uc010vny.1_Translation_Start_Site|TAF1C_uc010vnz.1_Translation_Start_Site|TAF1C_uc002fho.2_Translation_Start_Site|TAF1C_uc010voa.1_Intron|TAF1C_uc002fhp.1_RNA|TAF1C_uc010vob.1_Missense_Mutation_p.V100M	NM_005679	NP_005670	Q15572	TAF1C_HUMAN	TBP-associated factor 1C isoform 1	100					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding			ovary(1)	1						ACATCCAGCACGACTCGGGGC	0.637													8	16					0	0	0	0
GEMIN4	50628	broad.mit.edu	37	17	649755	649755	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr17:649755C>T	uc002frs.1	-	2	1647	c.1528G>A	c.(1528-1530)GGC>AGC	p.G510S		NM_015721	NP_056536	P57678	GEMI4_HUMAN	gemin 4	510					rRNA processing|spliceosomal snRNP assembly	Cajal body|cytosol|nucleolus|small nuclear ribonucleoprotein complex|spliceosomal complex	protein binding			ovary(2)|kidney(1)|skin(1)	4		Myeloproliferative disorder(207;0.204)		UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		TCAGAGAGGCCCTTTCGCCCC	0.527													14	25					0	0	0	0
KIF1C	10749	broad.mit.edu	37	17	4926827	4926827	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr17:4926827C>T	uc002gan.1	+	23	3019	c.2693C>T	c.(2692-2694)GCA>GTA	p.A898V		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	898					microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						GGATCAGAGGCAGCAGAGGAG	0.637													11	35					0	0	0	0
ZNF594	84622	broad.mit.edu	37	17	5086056	5086056	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr17:5086056C>T	uc010cla.1	-	2	1652	c.1496G>A	c.(1495-1497)CGG>CAG	p.R499Q		NM_032530	NP_115919	Q96JF6	ZN594_HUMAN	zinc finger protein 594	499	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3						GAGTGAACGCCGCCTGAAGGC	0.478													11	58					0	0	0	0
KRBA2	124751	broad.mit.edu	37	17	8273377	8273377	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr17:8273377C>T	uc002glf.1	-	2	560	c.554G>A	c.(553-555)CGG>CAG	p.R185Q	KRBA2_uc002glg.1_Missense_Mutation_p.R102Q	NM_213597	NP_998762	Q6ZNG9	KRBA2_HUMAN	KRAB-A domain containing 2	185					DNA integration|regulation of transcription, DNA-dependent	intracellular	DNA binding				0						TACATAATACCGTATTCGATC	0.443													47	127					0	0	0	0
MYO18A	399687	broad.mit.edu	37	17	27423781	27423781	+	Silent	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr17:27423781C>T	uc002hdt.1	-	28	4541	c.4383G>A	c.(4381-4383)AGG>AGA	p.R1461R	MYO18A_uc010wbc.1_Silent_p.R1003R|MYO18A_uc002hds.2_Silent_p.R1003R|MYO18A_uc010csa.1_Silent_p.R1461R|MYO18A_uc002hdu.1_Silent_p.R1461R|MYO18A_uc010wbd.1_Silent_p.R1130R	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	1461	Potential.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			CCACCCACCTCCTCTGCTTCT	0.627													3	10					0	0	0	0
CETN1	1068	broad.mit.edu	37	18	580607	580607	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr18:580607G>C	uc002kko.1	+	1	241	c.199G>C	c.(199-201)GAA>CAA	p.E67Q		NM_004066	NP_004057	Q12798	CETN1_HUMAN	centrin 1	67	EF-hand 2.				cell division|mitosis	spindle pole	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding			upper_aerodigestive_tract(1)|ovary(1)	2						ACCCAGGAAGGAAGAGATGAA	0.557													10	34					0	0	0	0
SMCHD1	23347	broad.mit.edu	37	18	2732451	2732451	+	Silent	SNP	A	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr18:2732451A>G	uc002klm.3	+	25	3426	c.3237A>G	c.(3235-3237)AGA>AGG	p.R1079R	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	1079					chromosome organization		ATP binding				0						AAGGAGAAAGAGAAATCAATA	0.289													6	28					0	0	0	0
MIB1	57534	broad.mit.edu	37	18	19379870	19379870	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr18:19379870G>C	uc002ktq.2	+	9	1306	c.1306G>C	c.(1306-1308)GTT>CTT	p.V436L	MIB1_uc002ktp.2_Missense_Mutation_p.V75L	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	436	ANK 1.				Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			TGAAGAATTAGTTAAGGCTGC	0.328													21	55					0	0	0	0
SMAD2	4087	broad.mit.edu	37	18	45394805	45394805	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr18:45394805G>A	uc002lcy.2	-	5	792	c.544C>T	c.(544-546)CGA>TGA	p.R182*	SMAD2_uc002lcz.2_Nonsense_Mutation_p.R182*|SMAD2_uc010xdc.1_Nonsense_Mutation_p.R152*|SMAD2_uc010xdd.1_Nonsense_Mutation_p.R152*	NM_005901	NP_005892	Q15796	SMAD2_HUMAN	Sma- and Mad-related protein 2 isoform 1	182					anterior/posterior pattern formation|cell fate commitment|common-partner SMAD protein phosphorylation|intracellular signal transduction|mesoderm formation|negative regulation of transcription, DNA-dependent|palate development|paraxial mesoderm morphogenesis|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|primary miRNA processing|regulation of binding|regulation of transforming growth factor beta receptor signaling pathway|response to cholesterol|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	activin responsive factor complex|cytosol	activating transcription factor binding|co-SMAD binding|double-stranded DNA binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			large_intestine(3)|lung(1)|central_nervous_system(1)	5						TCGGTGTGTCGGGGCACTAAT	0.438													12	44					0	0	0	0
CD226	10666	broad.mit.edu	37	18	67563082	67563082	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr18:67563082T>A	uc010dqo.2	-	3	1029	c.582A>T	c.(580-582)CAA>CAT	p.Q194H	CD226_uc002lkm.3_Missense_Mutation_p.Q194H	NM_006566	NP_006557	Q15762	CD226_HUMAN	CD226 molecule precursor	194	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|cell recognition|positive regulation of Fc receptor mediated stimulatory signaling pathway|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	cell surface|integral to plasma membrane|membrane raft	cell adhesion molecule binding|integrin binding|protein kinase binding|receptor activity				0		Esophageal squamous(42;0.129)				TGCTCACTATTTGTCTTGGGA	0.542													41	75					0	0	0	0
ZNF407	55628	broad.mit.edu	37	18	72343009	72343009	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr18:72343009G>A	uc002llw.2	+	1	91	c.34G>A	c.(34-36)GAG>AAG	p.E12K	ZNF407_uc010xfc.1_Missense_Mutation_p.E12K|ZNF407_uc010dqu.1_Missense_Mutation_p.E12K|ZNF407_uc002llu.2_Missense_Mutation_p.E11K	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	12					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		CGAAAATGATGAGGATGAAAA	0.408													7	18					0	0	0	0
NFATC1	4772	broad.mit.edu	37	18	77208983	77208983	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr18:77208983G>A	uc010xfg.1	+	4	2041	c.1588G>A	c.(1588-1590)GTC>ATC	p.V530I	NFATC1_uc002lnc.1_Missense_Mutation_p.V530I|NFATC1_uc010xff.1_Missense_Mutation_p.V530I|NFATC1_uc002lnd.2_Missense_Mutation_p.V530I|NFATC1_uc002lne.2_Missense_Mutation_p.V58I|NFATC1_uc010xfh.1_Missense_Mutation_p.V530I|NFATC1_uc010xfi.1_Missense_Mutation_p.V517I|NFATC1_uc010xfj.1_Missense_Mutation_p.V58I|NFATC1_uc002lnf.2_Missense_Mutation_p.V517I|NFATC1_uc002lng.2_Missense_Mutation_p.V517I|NFATC1_uc010xfk.1_Missense_Mutation_p.V517I	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	530	RHD.				intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		CATGCGAGCCGTGTAAGCCGC	0.687													8	27					0	0	0	0
FUT5	2527	broad.mit.edu	37	19	5867522	5867522	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr19:5867522G>A	uc002mdo.3	-	2	303	c.215C>T	c.(214-216)GCC>GTC	p.A72V	FUT5_uc010duo.2_Missense_Mutation_p.A72V	NM_002034	NP_002025	Q11128	FUT5_HUMAN	fucosyltransferase 5	72	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity|alpha(1,3)-fucosyltransferase activity				0						GGTGGGGTGGGCAGGGGTCGC	0.662													15	51					0	0	0	0
ZNF440	126070	broad.mit.edu	37	19	11942501	11942501	+	Silent	SNP	A	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr19:11942501A>G	uc002msp.1	+	4	666	c.510A>G	c.(508-510)AAA>AAG	p.K170K		NM_152357	NP_689570	Q8IYI8	ZN440_HUMAN	zinc finger protein 440	170					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTGGAGAGAAACCCAATGCTT	0.413													54	103					0	0	0	0
ZNF443	10224	broad.mit.edu	37	19	12541096	12541096	+	Silent	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr19:12541096G>A	uc002mtu.2	-	4	2088	c.1890C>T	c.(1888-1890)TCC>TCT	p.S630S		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	630	C2H2-type 18.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						GTCTATGCAAGGAACTGAGAG	0.403													22	96					0	0	0	0
EPS15L1	58513	broad.mit.edu	37	19	16552783	16552783	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr19:16552783C>T	uc002ndz.1	-	3	91	c.85G>A	c.(85-87)GCA>ACA	p.A29T	EPS15L1_uc002ndx.2_Missense_Mutation_p.A29T|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpf.1_5'UTR|EPS15L1_uc002nea.1_Missense_Mutation_p.A29T|EPS15L1_uc010eah.1_Missense_Mutation_p.A29T|EPS15L1_uc002nec.1_Missense_Mutation_p.A29T	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	29	EH 1.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						CCTGTGTATGCCGGATCGACC	0.512											OREG0025335	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	123					0	0	0	0
KIAA1683	80726	broad.mit.edu	37	19	18378184	18378184	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr19:18378184G>A	uc002nin.2	-	3	382	c.166C>T	c.(166-168)CAC>TAC	p.H56Y	KIAA1683_uc010ebn.2_Missense_Mutation_p.H56Y|KIAA1683_uc010xqe.1_Missense_Mutation_p.H10Y	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	56						mitochondrion				ovary(2)	2						AGGCCCTCGTGCTGGGGCTGT	0.657													31	76					0	0	0	0
ZNF99	7652	broad.mit.edu	37	19	22941426	22941426	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr19:22941426C>T	uc010xrh.1	-	5	1012	c.1012G>A	c.(1012-1014)GAA>AAA	p.E338K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTGCCACATTCTTCACATTTG	0.373													13	47					0	0	0	0
GRIK5	2901	broad.mit.edu	37	19	42546827	42546827	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr19:42546827C>T	uc002osj.1	-	11	1385	c.1350G>A	c.(1348-1350)ATG>ATA	p.M450I	GRIK5_uc002osi.1_Missense_Mutation_p.M22I|GRIK5_uc010eib.1_Missense_Mutation_p.M369I	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	450	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	GCTCCCGCAGCATGTCCACGC	0.677													14	25					0	0	0	0
ZC3H4	23211	broad.mit.edu	37	19	47570458	47570458	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr19:47570458C>T	uc002pga.3	-	15	3105	c.3067G>A	c.(3067-3069)GCC>ACC	p.A1023T	ZC3H4_uc002pgb.1_RNA	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	1023							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		CGCTGCCGGGCGTTGGGGGGC	0.706													13	24					0	0	0	0
PTPRH	5794	broad.mit.edu	37	19	55711682	55711682	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr19:55711682C>T	uc002qjq.2	-	7	1415	c.1342G>A	c.(1342-1344)GGA>AGA	p.G448R	PTPRH_uc010esv.2_Missense_Mutation_p.G270R|PTPRH_uc002qjs.2_Missense_Mutation_p.G455R	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	448	Extracellular (Potential).|Fibronectin type-III 5.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		TACAAGGTTCCGGGCTCAAGT	0.522													27	89					0	0	0	0
ZNF460	10794	broad.mit.edu	37	19	57803220	57803220	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr19:57803220G>T	uc002qog.2	+	3	1633	c.1311G>T	c.(1309-1311)AGG>AGT	p.R437S	ZNF460_uc010ygv.1_Missense_Mutation_p.R396S	NM_006635	NP_006626	Q14592	ZN460_HUMAN	zinc finger protein 460	437	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GGCTCACAAGGCACCAGTGGA	0.478													17	48					1.99824e-07	2.15111e-07	1	0
RBKS	64080	broad.mit.edu	37	2	28081341	28081341	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:28081341C>A	uc002rlo.1	-	2	198	c.187G>T	c.(187-189)GCT>TCT	p.A63S	RBKS_uc010ezi.1_5'UTR|RBKS_uc010ymg.1_Missense_Mutation_p.A63S	NM_022128	NP_071411	Q9H477	RBSK_HUMAN	ribokinase	63					D-ribose metabolic process		ATP binding|ribokinase activity			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)					CCAAGCCGAGCAGCTTGGACA	0.438													18	56					5.01169e-05	5.19634e-05	1	0
LTBP1	4052	broad.mit.edu	37	2	33540271	33540271	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:33540271A>G	uc002ros.2	+	24	3668	c.3668A>G	c.(3667-3669)GAG>GGG	p.E1223G	LTBP1_uc002rot.2_Missense_Mutation_p.E897G|LTBP1_uc002rou.2_Missense_Mutation_p.E896G|LTBP1_uc002rov.2_Missense_Mutation_p.E843G|LTBP1_uc010ymz.1_Missense_Mutation_p.E896G|LTBP1_uc010yna.1_Missense_Mutation_p.E843G|LTBP1_uc010ynb.1_Missense_Mutation_p.E162G	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1222	EGF-like 12; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CTAAACACAGAGGGTTCTTTC	0.408													11	44					0	0	0	0
DPP10	57628	broad.mit.edu	37	2	116503737	116503737	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:116503737C>T	uc002tla.1	+	10	1385	c.928C>T	c.(928-930)CCA>TCA	p.P310S	DPP10_uc002tlb.1_Missense_Mutation_p.P260S|DPP10_uc002tlc.1_Missense_Mutation_p.P306S|DPP10_uc002tle.2_Missense_Mutation_p.P314S|DPP10_uc002tlf.1_Missense_Mutation_p.P303S	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	310	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						GGAGCTCATGCCACCTGACAG	0.343													3	40					0	0	0	0
ARHGAP15	55843	broad.mit.edu	37	2	143913112	143913112	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:143913112G>A	uc002tvm.3	+	2	204	c.53G>A	c.(52-54)CGC>CAC	p.R18H	ARHGAP15_uc010zbl.1_Missense_Mutation_p.R18H	NM_018460	NP_060930	Q53QZ3	RHG15_HUMAN	ARHGAP15	18					regulation of cell shape|small GTPase mediated signal transduction	cytosol|membrane	protein binding|Rac GTPase activator activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.151)		AATTCTACCCGCCAAGGCACA	0.398													9	23					0	0	0	0
SLC4A10	57282	broad.mit.edu	37	2	162696359	162696359	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:162696359T>A	uc002ubx.3	+	4	522	c.338T>A	c.(337-339)ATT>AAT	p.I113N	SLC4A10_uc010fpa.1_Missense_Mutation_p.I125N|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Missense_Mutation_p.I113N|SLC4A10_uc010zcs.1_Missense_Mutation_p.I124N	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	113	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						GAGGAACACATTCCTCATGAC	0.438													19	57					0	0	0	0
OSBPL6	114880	broad.mit.edu	37	2	179197685	179197685	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:179197685A>T	uc002ulx.2	+	8	952	c.574A>T	c.(574-576)AGA>TGA	p.R192*	OSBPL6_uc002ulw.2_Nonsense_Mutation_p.R192*|OSBPL6_uc002uly.2_Nonsense_Mutation_p.R192*|OSBPL6_uc010zfe.1_Nonsense_Mutation_p.R192*|OSBPL6_uc002ulz.2_Nonsense_Mutation_p.R192*|OSBPL6_uc002uma.2_Nonsense_Mutation_p.R171*	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	192					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			GAGATCACCAAGAGATGCTAG	0.413													25	71					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179473617	179473617	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:179473617A>T	uc010zfg.1	-	223	44641	c.44417T>A	c.(44416-44418)ATC>AAC	p.I14806N	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.I8501N|TTN_uc010zfi.1_Missense_Mutation_p.I8434N|TTN_uc010zfj.1_Missense_Mutation_p.I8309N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15733							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACAAAGTTGATTGGTGGTCC	0.388													31	116					0	0	0	0
MARS2	92935	broad.mit.edu	37	2	198571571	198571571	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:198571571G>A	uc002uuq.2	+	1	1485	c.1442G>A	c.(1441-1443)CGG>CAG	p.R481Q	uc002uup.2_Intron	NM_138395	NP_612404	Q96GW9	SYMM_HUMAN	methionine-tRNA synthetase 2 precursor	481					methionyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|methionine-tRNA ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3					L-Methionine(DB00134)	AGCTGTGTCCGGCAAACTAAT	0.542													32	104					0	0	0	0
ERBB4	2066	broad.mit.edu	37	2	212295727	212295727	+	Missense_Mutation	SNP	A	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:212295727A>C	uc002veg.1	-	21	2684	c.2586T>G	c.(2584-2586)TTT>TTG	p.F862L	ERBB4_uc002veh.1_Missense_Mutation_p.F862L|ERBB4_uc010zji.1_Missense_Mutation_p.F852L|ERBB4_uc010zjj.1_Missense_Mutation_p.F852L	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	862	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TGGCTAGCCCAAAATCTGTGA	0.418										TSP Lung(8;0.080)			3	104					0	0	0	0
ABCB6	10058	broad.mit.edu	37	2	220080750	220080750	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:220080750G>A	uc002vkc.1	-	5	1400	c.1123C>T	c.(1123-1125)CGG>TGG	p.R375W	ABCB6_uc010fwe.1_Missense_Mutation_p.R329W|ABCB6_uc010zku.1_Intron	NM_005689	NP_005680	Q9NP58	ABCB6_HUMAN	ATP-binding cassette, sub-family B, member 6	375	ABC transmembrane type-1.				cadmium ion transmembrane transport|cellular iron ion homeostasis|detoxification of cadmium ion|porphyrin biosynthetic process	ATP-binding cassette (ABC) transporter complex|Golgi apparatus|integral to mitochondrial outer membrane|plasma membrane|vacuolar membrane	ATP binding|efflux transmembrane transporter activity|heme binding|heme-transporting ATPase activity			breast(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;1.22e-06)|all cancers(144;0.000201)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GATGTGCCCCGATCCGCGATC	0.687													4	16					0	0	0	0
KCNE4	23704	broad.mit.edu	37	2	223917672	223917672	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:223917672G>T	uc002vnl.3	+	2	278	c.124G>T	c.(124-126)GTC>TTC	p.V42F		NM_080671	NP_542402	Q8WWG9	KCNE4_HUMAN	potassium voltage-gated channel, Isk-related	42	Helical; (Potential).					integral to membrane	voltage-gated potassium channel activity			ovary(1)	1		Renal(207;0.0183)|Lung NSC(271;0.137)|all_lung(227;0.175)		Epithelial(121;4.48e-11)|all cancers(144;2.88e-08)|Lung(261;0.00688)|LUSC - Lung squamous cell carcinoma(224;0.008)		CATTCTGGTTGTCATGTCCTT	0.597													24	82					2.98393e-07	3.19475e-07	1	0
SERPINE2	5270	broad.mit.edu	37	2	224866605	224866605	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:224866605G>A	uc002vnu.2	-	2	256	c.13C>T	c.(13-15)CTC>TTC	p.L5F	SERPINE2_uc002vnt.2_Missense_Mutation_p.L5F|SERPINE2_uc010zlr.1_Missense_Mutation_p.L17F|SERPINE2_uc002vnv.2_Missense_Mutation_p.L5F	NM_006216	NP_006207	P07093	GDN_HUMAN	plasminogen activator inhibitor type 1, member 2	5					negative regulation of blood coagulation|negative regulation of plasminogen activation|negative regulation of platelet aggregation|positive regulation of astrocyte differentiation|regulation of cell migration	cytosol|extracellular matrix|extracellular space|extrinsic to external side of plasma membrane|neuromuscular junction|platelet alpha granule	heparin binding|receptor binding|serine-type endopeptidase inhibitor activity			breast(2)|ovary(1)|central_nervous_system(1)	4		Renal(207;0.025)|all_lung(227;0.0586)|Lung NSC(271;0.0682)|all_hematologic(139;0.0797)		Epithelial(121;5.68e-10)|all cancers(144;1.9e-07)|Lung(261;0.0088)|LUSC - Lung squamous cell carcinoma(224;0.00902)		AAGAGGGGGAGATGCCAGTTC	0.443													33	66					0	0	0	0
B3GNT7	93010	broad.mit.edu	37	2	232262638	232262638	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:232262638G>T	uc002vrs.2	+	2	388	c.208G>T	c.(208-210)GCG>TCG	p.A70S		NM_145236	NP_660279	Q8NFL0	B3GN7_HUMAN	UDP-GlcNAc:betaGal	70	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;3.22e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0139)		AGATGTGGCTGCGCCCACGCC	0.617													10	35					2.17888e-05	2.2711e-05	1	0
SIRPB2	284759	broad.mit.edu	37	20	1456848	1456848	+	Silent	SNP	G	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr20:1456848G>T	uc002wfg.2	-	5	1221	c.993C>A	c.(991-993)GCC>GCA	p.A331A	SIRPB2_uc002wfh.3_Silent_p.A233A	NM_001122962	NP_001116434	Q5JXA9	SIRB2_HUMAN	signal-regulatory protein beta 2 isoform 1	331	Cytoplasmic (Potential).					integral to membrane					0						AGGTGTTCATGGCTCCTGCTG	0.592													36	109					3.21399e-22	3.72445e-22	1	0
SNAP25	6616	broad.mit.edu	37	20	10256162	10256162	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr20:10256162G>A	uc002wnq.1	+	2	235	c.23G>A	c.(22-24)CGC>CAC	p.R8H	SNAP25_uc002wnr.1_Missense_Mutation_p.R8H|SNAP25_uc002wns.1_5'UTR|SNAP25_uc010gca.1_Missense_Mutation_p.R8H|SNAP25_uc010gcb.1_5'UTR|SNAP25_uc010gcc.1_5'UTR	NM_130811	NP_570824	P60880	SNP25_HUMAN	synaptosomal-associated protein 25 isoform	8	Interaction with CENPF (By similarity).				energy reserve metabolic process|glutamate secretion|neurotransmitter uptake|synaptic vesicle docking involved in exocytosis	cell junction|growth cone|perinuclear region of cytoplasm|synapse|synaptosome				skin(2)	2					Botulinum Toxin Type A(DB00083)	GCAGACATGCGCAATGAGCTG	0.602													7	25					0	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29625875	29625875	+	Missense_Mutation	SNP	T	C	C	rs143761036	by1000genomes	TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr20:29625875T>C	uc010ztl.1	+	2	61	c.29T>C	c.(28-30)ATC>ACC	p.I10T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGTACAGAATCGCCCTGAAA	0.353													9	78					0	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29625941	29625941	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr20:29625941A>T	uc010ztl.1	+	2	127	c.95A>T	c.(94-96)GAT>GTT	p.D32V	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGCATTCAGATGCAATTGGA	0.333													8	67					0	0	0	0
DNMT3B	1789	broad.mit.edu	37	20	31395666	31395666	+	Missense_Mutation	SNP	G	A	A	rs121908946		TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr20:31395666G>A	uc002wyc.2	+	23	2840	c.2519G>A	c.(2518-2520)CGA>CAA	p.R840Q	DNMT3B_uc002wyd.2_Missense_Mutation_p.R820Q|DNMT3B_uc002wye.2_Missense_Mutation_p.R757Q|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Missense_Mutation_p.R715Q|DNMT3B_uc010zua.1_Missense_Mutation_p.R681Q|DNMT3B_uc002wyf.2_Missense_Mutation_p.R832Q|DNMT3B_uc002wyg.2_Missense_Mutation_p.R476Q|DNMT3B_uc010geg.2_Silent_p.P99P|DNMT3B_uc010geh.2_RNA	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	840			R -> Q (in ICF).		negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						CCTGTCATCCGACACCTCTTC	0.602													35	106					0	0	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	46000227	46000228	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr21:46000227_46000228CC>TT	uc002zfl.1	-	1	254_255	c.228_229GG>AA	c.(226-231)CCGGCT>CCAACT	p.A77T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	77	3.|22 X 5 AA repeats of C-C-X(3).					keratin filament					0						gcgcagcaagccggctggcagc	0.292													4	72					0	0	0	0
LOC96610	96610	broad.mit.edu	37	22	23264932	23264932	+	RNA	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr22:23264932C>T	uc011aim.1	+	379		c.16753C>T								Parts of antibodies, mostly variable regions.												0						TGGAGACCACCAAACCCTCCA	0.597													7	50					0	0	0	0
RTDR1	27156	broad.mit.edu	37	22	23401824	23401824	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr22:23401824G>A	uc002zwt.2	-	7	1021	c.863C>T	c.(862-864)GCG>GTG	p.A288V		NM_014433	NP_055248	Q9UHP6	RTDR1_HUMAN	rhabdoid tumor deletion region protein 1	288							binding			ovary(1)	1	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.175)		ATTCAGGCGCGCTATGGTCAT	0.657													16	119					0	0	0	0
LIMK2	3985	broad.mit.edu	37	22	31655979	31655979	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr22:31655979C>T	uc003akh.2	+	5	612	c.467C>T	c.(466-468)CCG>CTG	p.P156L	LIMK2_uc003akg.2_Missense_Mutation_p.P73L|LIMK2_uc003aki.2_Intron|LIMK2_uc003akj.2_Missense_Mutation_p.P135L|LIMK2_uc003akk.2_Missense_Mutation_p.P135L|LIMK2_uc011aln.1_Missense_Mutation_p.P73L	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	156	PDZ.					mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						ATCTCCATGCCGGCCACCACT	0.557													4	77					0	0	0	0
EP300	2033	broad.mit.edu	37	22	41566460	41566460	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr22:41566460A>G	uc003azl.3	+	27	4732	c.4337A>G	c.(4336-4338)TAT>TGT	p.Y1446C		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	1446					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						GGAGATGATTATATCTTCCAT	0.408			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				52	72					0	0	0	0
TRIM71	131405	broad.mit.edu	37	3	32931915	32931915	+	Missense_Mutation	SNP	A	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr3:32931915A>C	uc003cff.2	+	4	1282	c.1219A>C	c.(1219-1221)AAC>CAC	p.N407H		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	407	Potential.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						GCTGCGGCAAAACCTCAACAA	0.567													27	83					0	0	0	0
SUSD5	26032	broad.mit.edu	37	3	33255548	33255548	+	Silent	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr3:33255548C>T	uc003cfo.1	-	2	580	c.162G>A	c.(160-162)CTG>CTA	p.L54L		NM_015551	NP_056366	O60279	SUSD5_HUMAN	sushi domain containing 5 precursor	54	Extracellular (Potential).|Link.				cell adhesion	integral to membrane	hyaluronic acid binding			ovary(1)|central_nervous_system(1)	2						GAGCAGCCTCCAGTTGTAGGC	0.547													5	28					0	0	0	0
SETD2	29072	broad.mit.edu	37	3	47163558	47163558	+	Silent	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr3:47163558G>A	uc003cqs.2	-	3	2621	c.2568C>T	c.(2566-2568)ATC>ATT	p.I856I	SETD2_uc003cqv.2_Silent_p.I845I	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	856					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		TAGTGCTACCGATGCTCTGCT	0.358			N|F|S|Mis		clear cell renal carcinoma								13	42					0	0	0	0
ATRIP	84126	broad.mit.edu	37	3	48501802	48501802	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr3:48501802C>T	uc003ctf.1	+	8	1381	c.1349C>T	c.(1348-1350)CCG>CTG	p.P450L	ATRIP_uc011bbj.1_Missense_Mutation_p.P323L|ATRIP_uc003ctg.1_Missense_Mutation_p.P450L|TREX1_uc010hjy.2_5'UTR	NM_130384	NP_569055	Q8WXE1	ATRIP_HUMAN	ATR interacting protein isoform 1	450					DNA damage checkpoint|DNA repair|DNA replication	nucleoplasm	protein binding|protein serine/threonine kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGGGACTCACCGACACATTCC	0.562								Other_conserved_DNA_damage_response_genes					15	59					0	0	0	0
OR5H6	79295	broad.mit.edu	37	3	97983874	97983874	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr3:97983874G>A	uc003dsi.1	+	1	746	c.746G>A	c.(745-747)GGG>GAG	p.G249E		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	249	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.G249G(1)		skin(2)|large_intestine(1)	3						TCTATCAAAGGGATACGAAAA	0.383													7	39					0	0	0	0
OR5H2	79310	broad.mit.edu	37	3	98001947	98001947	+	Silent	SNP	C	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr3:98001947C>G	uc003dsj.1	+	1	216	c.216C>G	c.(214-216)GCC>GCG	p.A72A		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	72	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GGAGTTTAGCCTTTGTTGATG	0.393													50	210					0	0	0	0
PIK3CA	5290	broad.mit.edu	37	3	178916876	178916876	+	Missense_Mutation	SNP	G	A	A	rs121913287		TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr3:178916876G>A	uc003fjk.2	+	2	420	c.263G>A	c.(262-264)CGA>CAA	p.R88Q		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	88	PI3K-ABD.		R -> Q (in cancer; may disrupt the interaction between the PI3K-ABD domain and the N-terminal lobe of PI3K/PI4K kinase domain possibly affecting the conformation of the kinase domain).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.R88Q(26)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			GAAACAAGACGACTTTGTGAC	0.363	R88Q(SKUT1_SOFT_TISSUE)|R88Q(JHUEM1_ENDOMETRIUM)|R88Q(SNGM_ENDOMETRIUM)	57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			16	62					0	0	0	0
PIK3CA	5290	broad.mit.edu	37	3	178952072	178952072	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr3:178952072A>G	uc003fjk.2	+	21	3284	c.3127A>G	c.(3127-3129)ATG>GTG	p.M1043V		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	1043	PI3K/PI4K.		M -> I (in cancer; shows an increase in lipid kinase activity).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.M1043I(31)|p.M1043V(15)|p.M1043T(3)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			CATGAAACAAATGAATGATGC	0.368		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			14	42					0	0	0	0
VPS8	23355	broad.mit.edu	37	3	184714191	184714191	+	Silent	SNP	G	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr3:184714191G>T	uc003fpb.1	+	43	3903	c.3732G>T	c.(3730-3732)TCG>TCT	p.S1244S	VPS8_uc010hyd.1_Silent_p.S1154S|VPS8_uc010hye.1_Silent_p.S673S	NM_015303	NP_056118	Q8N3P4	VPS8_HUMAN	vacuolar protein sorting 8 homolog isoform b	1246							zinc ion binding			ovary(1)	1	all_cancers(143;2.51e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.02e-33)|OV - Ovarian serous cystadenocarcinoma(80;4.81e-22)			TGAGAGCTTCGGTCACCAGAG	0.413													21	32					1.96292e-10	2.14831e-10	1	0
LPP	4026	broad.mit.edu	37	3	188242516	188242516	+	Silent	SNP	T	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr3:188242516T>C	uc003frs.1	+	5	616	c.370T>C	c.(370-372)TTG>CTG	p.L124L	LPP_uc011bsg.1_Silent_p.L124L|LPP_uc011bsi.1_Silent_p.L124L|LPP_uc003frt.2_Silent_p.L124L	NM_005578	NP_005569	Q93052	LPP_HUMAN	LIM domain containing preferred translocation	124	Pro-rich.				cell adhesion	cytoplasm|focal adhesion|nucleus	protein binding|zinc ion binding		HMGA2/LPP(161)	soft_tissue(134)|bone(27)|lung(2)|ovary(1)|breast(1)	165	all_cancers(143;1.37e-09)|all_hematologic(3;0.0429)|Ovarian(172;0.088)	all_lung(153;0.00139)|Lung NSC(153;0.00202)		GBM - Glioblastoma multiforme(93;0.00602)		GATTGACTCCTTGACCAGCAT	0.547			T	HMGA2|MLL|C12orf9	lipoma|leukemia								42	100					0	0	0	0
CPN2	1370	broad.mit.edu	37	3	194061983	194061983	+	Silent	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr3:194061983G>A	uc003fts.2	-	2	1539	c.1449C>T	c.(1447-1449)TAC>TAT	p.Y483Y		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	483					protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		CGGGGTTGCTGTAGGTGCACT	0.662													19	37					0	0	0	0
DHX15	1665	broad.mit.edu	37	4	24550530	24550530	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr4:24550530C>T	uc003gqx.2	-	6	1364	c.1196G>A	c.(1195-1197)CGC>CAC	p.R399H		NM_001358	NP_001349	O43143	DHX15_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 15	399	Helicase C-terminal.				mRNA processing	U12-type spliceosomal complex	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(1)	1		Breast(46;0.0503)				CTCAAAAATGCGTTGCTGCTG	0.363													11	37					0	0	0	0
WDR19	57728	broad.mit.edu	37	4	39217514	39217514	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr4:39217514C>G	uc003gtv.2	+	11	1169	c.1015C>G	c.(1015-1017)CAA>GAA	p.Q339E	WDR19_uc010ifl.1_Missense_Mutation_p.Q156E|WDR19_uc003gtu.1_Missense_Mutation_p.Q339E|WDR19_uc011byi.1_Missense_Mutation_p.Q179E|WDR19_uc003gtw.1_5'UTR	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19	339	WD 6.				cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						ACTCTCTACCCAAAGGGGCTC	0.448													20	56					0	0	0	0
PDGFRA	5156	broad.mit.edu	37	4	55141026	55141026	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr4:55141026C>T	uc003han.3	+	12	2003	c.1672C>T	c.(1672-1674)CGC>TGC	p.R558C	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Missense_Mutation_p.R452C|PDGFRA_uc003ham.2_RNA|PDGFRA_uc003hao.1_5'Flank	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	558	Cytoplasmic (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GTATGAAATTCGCTGGAGGGT	0.463			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			22	50					0	0	0	0
ALB	213	broad.mit.edu	37	4	74284002	74284002	+	Silent	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr4:74284002G>A	uc003hgs.3	+	12	1699	c.1626G>A	c.(1624-1626)GAG>GAA	p.E542E	ALB_uc003hgw.3_Silent_p.E350E|ALB_uc011cbe.1_Silent_p.E221E|ALB_uc003hgt.3_Silent_p.E542E|ALB_uc010iii.2_Silent_p.E427E|ALB_uc003hgu.3_Silent_p.E392E|ALB_uc003hgv.3_Silent_p.E221E|ALB_uc011cbf.1_Silent_p.E432E|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_Silent_p.E221E	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	542	Albumin 3.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	CACTTTCTGAGAAGGAGAGAC	0.388													12	51					0	0	0	0
HELQ	113510	broad.mit.edu	37	4	84368164	84368164	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr4:84368164T>C	uc003hom.2	-	4	1395	c.1216A>G	c.(1216-1218)ATA>GTA	p.I406V	HELQ_uc010ikb.2_Intron|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	406	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						CCGAGTTCTATACCAAAACTT	0.239								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					9	25					0	0	0	0
BDH2	56898	broad.mit.edu	37	4	104017355	104017355	+	Silent	SNP	G	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr4:104017355G>C	uc003hwz.2	-	2	162	c.57C>G	c.(55-57)GGC>GGG	p.G19G	BDH2_uc003hxa.2_RNA	NM_020139	NP_064524	Q9BUT1	BDH2_HUMAN	3-hydroxybutyrate dehydrogenase, type 2	19	NAD.				fatty acid beta-oxidation|heme metabolic process|iron ion homeostasis|siderophore biosynthetic process	cytoplasm	3-hydroxybutyrate dehydrogenase activity|NAD binding|oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.02e-08)		CAGCTGCTTGGCCAATCCCCT	0.423													11	24					0	0	0	0
INPP4B	8821	broad.mit.edu	37	4	143003331	143003331	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr4:143003331C>A	uc003iix.3	-	26	3090	c.2495G>T	c.(2494-2496)CGC>CTC	p.R832L	INPP4B_uc003iiw.3_Missense_Mutation_p.R832L|INPP4B_uc011chm.1_RNA|INPP4B_uc011chn.1_Missense_Mutation_p.R647L|INPP4B_uc011cho.1_RNA	NM_003866	NP_003857	O15327	INP4B_HUMAN	inositol polyphosphate-4-phosphatase, type II,	832					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			ovary(1)|lung(1)	2	all_hematologic(180;0.158)					ATTCAGTTTGCGGCAAATCTG	0.403													11	45					0.00136819	0.00141117	1	0
IRX2	153572	broad.mit.edu	37	5	2748625	2748625	+	Silent	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr5:2748625G>A	uc003jda.2	-	3	1439	c.1197C>T	c.(1195-1197)AAC>AAT	p.N399N	IRX2_uc003jdb.2_Silent_p.N399N	NM_001134222	NP_001127694	Q9BZI1	IRX2_HUMAN	iroquois homeobox 2	399						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1				GBM - Glioblastoma multiforme(108;0.204)		GCAGCGCCGCGTTCAAGTTCC	0.711													21	67					0	0	0	0
DNAH5	1767	broad.mit.edu	37	5	13839478	13839478	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr5:13839478G>A	uc003jfd.2	-	35	5911	c.5869C>T	c.(5869-5871)CCA>TCA	p.P1957S		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1957	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCTGTAAGTGGAGTTATTACA	0.418									Kartagener_syndrome				29	104					0	0	0	0
CCDC125	202243	broad.mit.edu	37	5	68603840	68603840	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr5:68603840C>T	uc003jvv.1	-	4	512	c.469G>A	c.(469-471)GCC>ACC	p.A157T	CCDC125_uc003jvx.1_Missense_Mutation_p.A156T|CCDC125_uc003jvy.1_Intron|CCDC125_uc003jvw.2_Missense_Mutation_p.A32T|CCDC125_uc003jvz.1_3'UTR	NM_176816	NP_789786	Q86Z20	CC125_HUMAN	coiled-coil domain containing 125	157	Potential.					cytoplasm					0		Lung NSC(167;7.26e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;2.2e-56)|Epithelial(20;2.31e-52)|all cancers(19;5.85e-48)|Lung(70;0.0183)		TGACTTGTGGCTTTGCCCAGT	0.343													49	45					0	0	0	0
NUDT12	83594	broad.mit.edu	37	5	102895788	102895788	+	Silent	SNP	T	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr5:102895788T>G	uc003koi.2	-	2	255	c.162A>C	c.(160-162)GCA>GCC	p.A54A	NUDT12_uc011cvb.1_Intron|NUDT12_uc010jbq.1_Silent_p.A54A	NM_031438	NP_113626	Q9BQG2	NUD12_HUMAN	nudix-type motif 12	54	ANK 2.					nucleus|peroxisome	metal ion binding|NAD+ diphosphatase activity				0		all_cancers(142;6.38e-08)|all_epithelial(76;1.99e-10)|Prostate(80;0.0138)|Lung NSC(167;0.0212)|Colorectal(57;0.0247)|all_lung(232;0.0283)|Ovarian(225;0.0423)		Epithelial(69;9.3e-13)|COAD - Colon adenocarcinoma(37;0.0221)		GCCCATTCCTTGCCGCATACA	0.408													14	106					0	0	0	0
CXXC5	51523	broad.mit.edu	37	5	139060923	139060923	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr5:139060923G>A	uc010jfg.1	+	2	1105	c.815G>A	c.(814-816)CGC>CAC	p.R272H	CXXC5_uc003let.2_Missense_Mutation_p.R272H	NM_016463	NP_057547	Q7LFL8	CXXC5_HUMAN	CXXC finger 5	272	CXXC-type.				positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|nucleus	DNA binding|signal transducer activity|zinc ion binding			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCCGGCGGCGCATCAACTGC	0.572													81	112					0	0	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215783	140215783	+	Silent	SNP	G	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr5:140215783G>T	uc003lhq.2	+	1	1815	c.1815G>T	c.(1813-1815)GCG>GCT	p.A605A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.A605A	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	605	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTACAACGCGTGGCTTTCGT	0.637													31	83					5.60225e-13	6.30653e-13	1	0
PCDHA12	56137	broad.mit.edu	37	5	140256301	140256301	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr5:140256301G>A	uc003lic.2	+	1	1371	c.1244G>A	c.(1243-1245)CGC>CAC	p.R415H	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.R415H	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	415	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCCTGGACCGCGAGAGCGTG	0.612													57	223					0	0	0	0
SGCD	6444	broad.mit.edu	37	5	156186283	156186283	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr5:156186283C>T	uc003lwd.3	+	8	1228	c.752C>T	c.(751-753)ACG>ATG	p.T251M	SGCD_uc003lwc.3_Missense_Mutation_p.T252M	NM_001128209	NP_001121681	Q92629	SGCD_HUMAN	delta-sarcoglycan isoform 3	251	Extracellular (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0	Renal(175;0.00488)	Medulloblastoma(196;0.0378)|all_neural(177;0.106)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGATCCTACACGCCTACAGGA	0.498													20	106					0	0	0	0
STK10	6793	broad.mit.edu	37	5	171520586	171520586	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr5:171520586C>T	uc003mbo.1	-	9	1684	c.1384G>A	c.(1384-1386)GGG>AGG	p.G462R		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	462							ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AGCTTCTCCCCACCCAAGGTC	0.652													23	96					0	0	0	0
STK10	6793	broad.mit.edu	37	5	171534817	171534817	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr5:171534817T>C	uc003mbo.1	-	5	860	c.560A>G	c.(559-561)CAG>CGG	p.Q187R		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	187	Protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			ATCTCGTTTCTGTAGAGTCTT	0.498											OREG0017039	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	54					0	0	0	0
SH3PXD2B	285590	broad.mit.edu	37	5	171774317	171774317	+	Silent	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr5:171774317C>T	uc003mbr.2	-	11	1203	c.1032G>A	c.(1030-1032)CAG>CAA	p.Q344Q		NM_001017995	NP_001017995	A1X283	SPD2B_HUMAN	SH3 and PX domains 2B	344					adipose tissue development|bone development|cell communication|cell differentiation|eye development|heart development|podosome assembly	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-5-phosphate binding|SH2 domain binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0207)|all_neural(177;0.0625)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GAGGGGGTCTCTGCCTCATCT	0.542													11	79					0	0	0	0
GPX6	257202	broad.mit.edu	37	6	28473490	28473490	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr6:28473490G>T	uc011dlj.1	-	5	499	c.449C>A	c.(448-450)ACT>AAT	p.T150N	GPX6_uc010jrg.1_Intron	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	150					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	CTTCAGGAAAGTAAAGACCTT	0.473													15	72					6.31663e-08	6.83723e-08	1	0
TAP2	6891	broad.mit.edu	37	6	32782192	32782192	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr6:32782192G>A	uc011dqf.1	-	14	2491	c.2369C>T	c.(2368-2370)ACT>ATT	p.T790I	HLA-DOB_uc003oca.2_Missense_Mutation_p.T183I|HLA-DOB_uc011dqg.1_Missense_Mutation_p.T183I	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	Error:Variant_position_missing_in_Q03519_after_alignment					antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						CATCACCACAGTCTGAAAGGT	0.532													33	88					0	0	0	0
GRM4	2914	broad.mit.edu	37	6	34029792	34029792	+	Silent	SNP	G	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr6:34029792G>T	uc003oir.3	-	3	920	c.750C>A	c.(748-750)ATC>ATA	p.I250I	GRM4_uc011dsn.1_Silent_p.I250I|GRM4_uc010jvh.2_Silent_p.I250I|GRM4_uc010jvi.2_5'UTR|GRM4_uc003oio.2_5'UTR|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Silent_p.I110I|GRM4_uc003oiq.2_Silent_p.I117I|GRM4_uc011dsm.1_Silent_p.I81I	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	250	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	CCGACTGGGCGATGCACACGC	0.627													26	28					1.66031e-10	1.82726e-10	1	0
PAQR8	85315	broad.mit.edu	37	6	52268776	52268776	+	Silent	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr6:52268776C>T	uc003pao.3	+	2	939	c.765C>T	c.(763-765)TTC>TTT	p.F255F		NM_133367	NP_588608	Q8TEZ7	MPRB_HUMAN	progestin and adipoQ receptor family member	255	Helical; Name=5; (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane|plasma membrane	receptor activity|steroid binding				0	Lung NSC(77;0.0875)					TCCTCTTCTTCCTGGTTAGCG	0.577													14	55					0	0	0	0
FAM83B	222584	broad.mit.edu	37	6	54735396	54735396	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr6:54735396G>A	uc003pck.2	+	2	468	c.352G>A	c.(352-354)GGC>AGC	p.G118S		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	118										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					ACTCTTAGGGGGCACCCATAT	0.433													32	93					0	0	0	0
EPHA7	2045	broad.mit.edu	37	6	94068069	94068069	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr6:94068069G>T	uc003poe.2	-	4	1134	c.893C>A	c.(892-894)ACT>AAT	p.T298N	EPHA7_uc003pof.2_Missense_Mutation_p.T298N|EPHA7_uc011eac.1_Missense_Mutation_p.T298N	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	298	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		AAAACTGTGAGTTGGACAACG	0.473													10	66					2.17888e-05	2.2711e-05	1	0
SIM1	6492	broad.mit.edu	37	6	100841635	100841635	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr6:100841635G>A	uc003pqj.3	-	10	1505	c.1298C>T	c.(1297-1299)TCG>TTG	p.S433L	SIM1_uc010kcu.2_Missense_Mutation_p.S433L	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	433	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		GTAGGCGCACGATGCGTCGTG	0.617													13	59					0	0	0	0
LIN28B	389421	broad.mit.edu	37	6	105406144	105406144	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr6:105406144G>A	uc003pqv.1	+	2	384	c.181G>A	c.(181-183)GAT>AAT	p.D61N	LIN28B_uc010kda.1_Missense_Mutation_p.D21N	NM_001004317	NP_001004317	Q6ZN17	LN28B_HUMAN	lin-28 homolog B	61	CSD.				miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing	cytoplasm|nucleus	DNA binding|protein binding|RNA binding|zinc ion binding				0		all_cancers(87;0.00346)|Acute lymphoblastic leukemia(125;2.26e-08)|all_hematologic(75;2.79e-06)|all_epithelial(87;0.204)				TATTCCAGTCGATGTATTTGT	0.458													39	114					0	0	0	0
RTN4IP1	84816	broad.mit.edu	37	6	107019900	107019900	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr6:107019900G>A	uc003prj.2	-	9	1639	c.1162C>T	c.(1162-1164)CGA>TGA	p.R388*	RTN4IP1_uc010kdd.2_3'UTR|RTN4IP1_uc003prk.2_Nonsense_Mutation_p.R288*	NM_032730	NP_116119	Q8WWV3	RT4I1_HUMAN	reticulon 4 interacting protein 1 precursor	388						mitochondrion	oxidoreductase activity|zinc ion binding				0	Breast(9;0.0107)|all_epithelial(6;0.14)	all_cancers(87;9.45e-05)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.0144)	Epithelial(6;0.000873)|all cancers(7;0.00363)|BRCA - Breast invasive adenocarcinoma(8;0.00721)|OV - Ovarian serous cystadenocarcinoma(5;0.0394)	all cancers(137;0.113)|BRCA - Breast invasive adenocarcinoma(108;0.127)|Epithelial(106;0.144)		GTCTTTCCTCGTGCGTGTCCT	0.383													21	94					0	0	0	0
FAM184A	79632	broad.mit.edu	37	6	119341157	119341157	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr6:119341157G>T	uc003pyj.2	-	4	1666	c.1318C>A	c.(1318-1320)CTA>ATA	p.L440I	FAM184A_uc003pyk.3_Missense_Mutation_p.L320I|FAM184A_uc003pyl.3_Missense_Mutation_p.L320I	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	440	Potential.									ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						TCCAGTTCTAGAATCTGTTGC	0.388													25	58					3.65163e-15	4.13431e-15	1	0
C6orf170	221322	broad.mit.edu	37	6	121600349	121600349	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr6:121600349C>A	uc003pyo.1	-	15	1719	c.1651G>T	c.(1651-1653)GGT>TGT	p.G551C	C6orf170_uc003pyq.1_RNA|C6orf170_uc003pyp.1_Missense_Mutation_p.G70C	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	551					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		GCCAAAATACCAGCTATATGA	0.323													18	72					1.02788e-11	1.14403e-11	1	0
PBOV1	59351	broad.mit.edu	37	6	138539373	138539373	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr6:138539373G>A	uc003qhv.2	-	1	255	c.160C>T	c.(160-162)CGA>TGA	p.R54*	KIAA1244_uc003qhu.2_Intron	NM_021635	NP_067648	Q9GZY1	PBOV1_HUMAN	prostate and breast cancer overexpressed 1	54						cytoplasm|nucleus					0	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00055)|GBM - Glioblastoma multiforme(68;0.000674)		TCTTTTTTTCGAAATACCTtg	0.194													10	33					0	0	0	0
CARD11	84433	broad.mit.edu	37	7	2946386	2946386	+	Silent	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr7:2946386G>A	uc003smv.2	-	25	3755	c.3351C>T	c.(3349-3351)TAC>TAT	p.Y1117Y		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	1117	Guanylate kinase-like.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CCACCGTGGCGTACAGGCACG	0.647			Mis		DLBCL								9	30					0	0	0	0
GCK	2645	broad.mit.edu	37	7	44187277	44187277	+	Missense_Mutation	SNP	C	T	T	rs104894005	byFrequency	TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr7:44187277C>T	uc003tkl.2	-	7	1305	c.835G>A	c.(835-837)GAG>AAG	p.E279K	GCK_uc003tkh.1_5'Flank|GCK_uc003tki.1_5'Flank|GCK_uc003tkj.1_Missense_Mutation_p.E278K|GCK_uc003tkk.1_Missense_Mutation_p.E280K	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	279			E -> Q (in MODY2).		cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						GCAGAGCTCTCGTCCACCAGG	0.692													23	62					0	0	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94897863	94897863	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr7:94897863C>A	uc003unp.2	+	12	2883	c.2601C>A	c.(2599-2601)GAC>GAA	p.D867E	PPP1R9A_uc010lfj.2_Missense_Mutation_p.D889E|PPP1R9A_uc011kif.1_Missense_Mutation_p.D867E|PPP1R9A_uc003unq.2_Missense_Mutation_p.D867E|PPP1R9A_uc011kig.1_Missense_Mutation_p.D867E|PPP1R9A_uc003unr.2_5'UTR	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	867	Interacts with TGN38 (By similarity).					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			TATTCTTAGACTTGAATGAAG	0.443										HNSCC(28;0.073)			25	48					1.42536e-11	1.5775e-11	1	0
RELN	5649	broad.mit.edu	37	7	103270590	103270590	+	Silent	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr7:103270590C>T	uc003vca.2	-	20	2659	c.2499G>A	c.(2497-2499)AAG>AAA	p.K833K	RELN_uc010liz.2_Silent_p.K833K	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	833					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TTCCAAACTGCTTTGCATCAC	0.343													16	80					0	0	0	0
PUS7	54517	broad.mit.edu	37	7	105099648	105099648	+	Silent	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr7:105099648G>A	uc003vcx.2	-	15	2035	c.1816C>T	c.(1816-1818)CTA>TTA	p.L606L	PUS7_uc010lji.2_Silent_p.L612L|PUS7_uc003vcy.2_Silent_p.L606L|PUS7_uc003vcz.1_Silent_p.L606L	NM_019042	NP_061915	Q96PZ0	PUS7_HUMAN	pseudouridylate synthase 7 homolog	606					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			breast(1)	1						TTCCCTTCTAGGTTGTCCACA	0.348													14	41					0	0	0	0
CADPS2	93664	broad.mit.edu	37	7	122111562	122111562	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr7:122111562C>T	uc010lkp.2	-	13	2216	c.2053G>A	c.(2053-2055)GGT>AGT	p.G685S	CADPS2_uc011knx.1_Missense_Mutation_p.G56S|CADPS2_uc003vkg.3_Missense_Mutation_p.G382S|CADPS2_uc010lkq.2_Missense_Mutation_p.G682S	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	685					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						CCTCTCACACCATAACGGGCA	0.418													3	10					0	0	0	0
IMPDH1	3614	broad.mit.edu	37	7	128038619	128038619	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr7:128038619G>T	uc011kol.1	-	7	774	c.668C>A	c.(667-669)GCC>GAC	p.A223D	IMPDH1_uc011kom.1_Missense_Mutation_p.A218D|IMPDH1_uc003vmt.2_Missense_Mutation_p.A198D|IMPDH1_uc003vmu.2_Missense_Mutation_p.A308D|IMPDH1_uc003vmw.2_Missense_Mutation_p.A298D|IMPDH1_uc011kon.1_Missense_Mutation_p.A275D|IMPDH1_uc003vmv.2_Missense_Mutation_p.A272D|IMPDH1_uc003vmx.2_Missense_Mutation_p.A231D|IMPDH1_uc003vmy.2_Missense_Mutation_p.A239D	NM_001142573	NP_001136045	P20839	IMDH1_HUMAN	inosine monophosphate dehydrogenase 1 isoform e	223	CBS 2.				GMP biosynthetic process|purine base metabolic process	cytosol|nucleus	DNA binding|IMP dehydrogenase activity|metal ion binding			skin(2)|lung(1)|central_nervous_system(1)	4					Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|NADH(DB00157)|Ribavirin(DB00811)|Thioguanine(DB00352)	GTCGGTGCGGGCGATGATGGC	0.577											OREG0018292	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	111					1.06647e-15	1.21442e-15	1	0
CSMD1	64478	broad.mit.edu	37	8	2966226	2966226	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr8:2966226C>T	uc011kwk.1	-	44	7046	c.6656G>A	c.(6655-6657)GGC>GAC	p.G2219D	CSMD1_uc011kwj.1_Missense_Mutation_p.G1611D|CSMD1_uc010lrg.2_Missense_Mutation_p.G287D	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2219	Extracellular (Potential).|CUB 13.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GGCTGTGTTGCCACTGAAAAC	0.498													5	12					0	0	0	0
MFHAS1	9258	broad.mit.edu	37	8	8749414	8749414	+	Silent	SNP	G	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr8:8749414G>A	uc003wsj.1	-	1	1718	c.1155C>T	c.(1153-1155)TGC>TGT	p.C385C		NM_004225	NP_004216	Q9Y4C4	MFHA1_HUMAN	malignant fibrous histiocytoma amplified	385											0		Hepatocellular(245;0.217)		COAD - Colon adenocarcinoma(149;0.124)		TCCCCTTCATGCAGACCTCGT	0.617													22	19					0	0	0	0
NACAP1	83955	broad.mit.edu	37	8	102381119	102381119	+	5'Flank	SNP	T	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr8:102381119T>A	uc003ykc.1	+						NACAP1_uc010mbs.1_RNA	NR_002182				SubName: Full=NACAP1 protein;												0						CCATCTTGATTCCACGTTCCC	0.547													5	16					0	0	0	0
UBR5	51366	broad.mit.edu	37	8	103281237	103281237	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr8:103281237C>A	uc003ykr.1	-	51	7363	c.7330G>T	c.(7330-7332)GAG>TAG	p.E2444*	UBR5_uc003yks.1_Nonsense_Mutation_p.E2444*|UBR5_uc003ykq.2_5'Flank	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	2444	PABC.				cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			TCCATGGCCTCATCCACTCTT	0.443													27	117					3.73148e-12	4.17671e-12	1	0
ZNF572	137209	broad.mit.edu	37	8	125989237	125989237	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr8:125989237C>A	uc003yrr.2	+	3	882	c.727C>A	c.(727-729)CCA>ACA	p.P243T		NM_152412	NP_689625	Q7Z3I7	ZN572_HUMAN	zinc finger protein 572	243					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			AGGTGAAAAACCATATGAATG	0.453										HNSCC(60;0.17)			22	90					1.26454e-06	1.34657e-06	1	0
ASAP1	50807	broad.mit.edu	37	8	131130412	131130412	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr8:131130412T>G	uc003yta.1	-	19	1903	c.1875A>C	c.(1873-1875)CAA>CAC	p.Q625H	ASAP1_uc003ysz.1_Missense_Mutation_p.Q436H|ASAP1_uc011liw.1_Missense_Mutation_p.Q618H	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	625	ANK 1.				cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						GATACCAGTTTTGTACAAGGA	0.388													34	42					0	0	0	0
GPAA1	8733	broad.mit.edu	37	8	145139718	145139718	+	Silent	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr8:145139718C>T	uc003zax.2	+	8	1214	c.1104C>T	c.(1102-1104)TTC>TTT	p.F368F	GPAA1_uc003zav.1_Silent_p.F246F|GPAA1_uc003zaw.1_Silent_p.F308F	NM_003801	NP_003792	O43292	GPAA1_HUMAN	glycosylphosphatidylinositol anchor attachment	368	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|protein complex assembly|protein retention in ER lumen	GPI-anchor transamidase complex	tubulin binding				0	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.02e-40)|all cancers(56;2.11e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TCTCCCGCTTCGTCTCCATCG	0.607													83	93					0	0	0	0
IFNA21	3452	broad.mit.edu	37	9	21166295	21166295	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr9:21166295T>G	uc003zom.2	-	1	365	c.317A>C	c.(316-318)GAA>GCA	p.E106A		NM_002175	NP_002166	P01568	IFN21_HUMAN	interferon, alpha 21 precursor	106					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(5;1.93e-187)|Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		GGAAAATTTTTCTAGGAGGCT	0.498													45	178					0	0	0	0
Unknown	0	broad.mit.edu	37	9	90747151	90747151	+	Silent	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr9:90747151C>T	uc011lti.1	-	4	830	c.801G>A	c.(799-801)GCG>GCA	p.A267A						SubName: Full=cDNA FLJ59639;																		GGACAGAAGCCGCCAAATCCT	0.562													40	115					0	0	0	0
GOLGA1	2800	broad.mit.edu	37	9	127650555	127650556	+	Nonsense_Mutation	DNP	GC	AA	AA			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr9:127650555_127650556GC>AA	uc004bpc.2	-	19	2223_2224	c.1881_1882GC>TT	c.(1879-1884)GAGCAG>GATTAG	p.627_628EQ>D*	GOLGA1_uc010mws.2_RNA	NM_002077	NP_002068	Q92805	GOGA1_HUMAN	golgin 97	627_628	Potential.					Golgi cisterna membrane				ovary(1)	1						AGAAGTTGCTGCTCCAAGTCCT	0.515													42	251					0	0	0	0
TEX13A	56157	broad.mit.edu	37	X	104464900	104464900	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chrX:104464900C>T	uc004ema.2	-	2	294	c.182G>A	c.(181-183)AGT>AAT	p.S61N	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Missense_Mutation_p.S61N	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	61						intracellular	zinc ion binding			ovary(2)	2						TTTGACCTCACTGGGCACCTC	0.592													15	20					0	0	0	0
TRPC5	7224	broad.mit.edu	37	X	111195420	111195420	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chrX:111195420C>A	uc004epl.1	-	2	1148	c.229G>T	c.(229-231)GCC>TCC	p.A77S	TRPC5_uc004epm.1_Missense_Mutation_p.A77S	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	77	ANK 2.|Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TTCTCAATGGCAATGAGCAGG	0.527													26	39					2.85442e-18	3.2693e-18	1	0
ADAM30	11085	broad.mit.edu	37	1	120436723	120436723	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:120436723delG	uc001eij.2	-	1	2391	c.2237delC	c.(2236-2238)ACAfs	p.T746fs		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	746	2.|5 X 9 AA approximate repeats.|Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		TCCAGTTTTTGTTTTAGATTC	0.353													---	---	---							
CACNA1S	779	broad.mit.edu	37	1	201042688	201042688	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr1:201042688delT	uc001gvv.2	-	15	2373	c.2146delA	c.(2146-2148)ACCfs	p.T716fs		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	716	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TTGGCAGTGGTGGGGATGCCC	0.552													---	---	---							
CAMKK2	10645	broad.mit.edu	37	12	121682412	121682412	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr12:121682412delT	uc001tzu.2	-	16	1684	c.1560delA	c.(1558-1560)AAAfs	p.K520fs	CAMKK2_uc001tzt.2_Intron|CAMKK2_uc001tzv.2_Frame_Shift_Del_p.K520fs|CAMKK2_uc001tzw.2_Frame_Shift_Del_p.K477fs|CAMKK2_uc001tzx.2_Intron|CAMKK2_uc001tzy.2_Intron|CAMKK2_uc001tzz.1_Frame_Shift_Del_p.K307fs|CAMKK2_uc001uaa.1_Frame_Shift_Del_p.K520fs|CAMKK2_uc001uab.2_Frame_Shift_Del_p.K520fs|CAMKK2_uc001uac.2_Frame_Shift_Del_p.K477fs	NM_006549	NP_006540	Q96RR4	KKCC2_HUMAN	calcium/calmodulin-dependent protein kinase	520					calcium-mediated signaling|MAPKKK cascade|positive regulation of transcription, DNA-dependent|protein autophosphorylation|regulation of protein kinase activity	cytoplasm	ATP binding|calcium ion binding|calmodulin binding|calmodulin-dependent protein kinase activity|protein tyrosine kinase activity			lung(1)|large_intestine(1)|stomach(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CCCTGGTTGGTTTTTTGCTGG	0.627													---	---	---							
ZIC2	7546	broad.mit.edu	37	13	100635008	100635010	+	In_Frame_Del	DEL	CCA	-	-			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr13:100635008_100635010delCCA	uc001von.2	+	1	690_692	c.690_692delCCA	c.(688-693)GCCCAC>GCC	p.H239del		NM_007129	NP_009060	O95409	ZIC2_HUMAN	zinc finger protein of the cerebellum 2	239	Necessary for interaction with MDFIC and transcriptional activation or repression (By similarity).|Poly-His.		Missing.|H -> HH.		brain development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|visual perception	cytoplasm|nucleus	chromatin DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CAGCCGCGGCccaccaccaccac	0.522													---	---	---							
RFX7	64864	broad.mit.edu	37	15	56387585	56387586	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr15:56387585_56387586insA	uc010bfn.2	-	9	2340_2341	c.2340_2341insT	c.(2338-2343)AATGGAfs	p.N780fs	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Frame_Shift_Ins_p.N594fs	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	683_684					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						TGTTGCCATCCATTTGGATTAA	0.371													---	---	---							
MBTPS1	8720	broad.mit.edu	37	16	84115471	84115472	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr16:84115471_84115472insT	uc002fhi.2	-	11	1830_1831	c.1328_1329insA	c.(1327-1329)AAGfs	p.K443fs		NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1	443	Lumenal (Potential).				cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						TCAGGGCCTGCTTCATACTGGC	0.525													---	---	---							
XDH	7498	broad.mit.edu	37	2	31562418	31562418	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:31562418delG	uc002rnv.1	-	34	3790	c.3711delC	c.(3709-3711)CCCfs	p.P1237fs		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	1237					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TGAACTCAATGGGGATGCTGC	0.577													---	---	---							
Unknown	0	broad.mit.edu	37	2	133020743	133020744	+	IGR	INS	-	T	T	rs137914230		TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:133020743_133020744insT								NCRNA00164 (5201 upstream) : GPR39 (153403 downstream)																							TTAGATAGCTCTTTATTGTCAT	0.327													---	---	---							
Unknown	0	broad.mit.edu	37	2	177065588	177065588	+	IGR	DEL	T	-	-			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr2:177065588delT								HOXD1 (9953 upstream) : MTX2 (68535 downstream)																							tggttacttctTTTTTTTTTT	0.164													---	---	---							
FRG1B	284802	broad.mit.edu	37	20	29625899	29625900	+	Frame_Shift_Ins	INS	-	AT	AT			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr20:29625899_29625900insAT	uc010ztl.1	+	2	85_86	c.53_54insAT	c.(52-54)AAAfs	p.K18fs	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGCTATGGAAAATATCTTGGTA	0.342													---	---	---							
APOL5	80831	broad.mit.edu	37	22	36113801	36113801	+	5'Flank	DEL	G	-	-	rs71191391		TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr22:36113801delG	uc003aof.2	+							NM_030642	NP_085145	Q9BWW9	APOL5_HUMAN	apolipoprotein L5						lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding				0						aaaaaaaaaagaaagaaaaga	0.149													---	---	---							
Unknown	0	broad.mit.edu	37	4	89430905	89430906	+	IGR	INS	-	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr4:89430905_89430906insG								HERC5 (3600 upstream) : PIGY (11229 downstream)																							GAGCCAGTCGTGGGGGGTTGTT	0.500													---	---	---							
PCDHGA9	56107	broad.mit.edu	37	5	140783917	140783918	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr5:140783917_140783918delCA	uc003lkh.1	+	1	1398_1399	c.1398_1399delCA	c.(1396-1401)GCCAGAfs	p.A466fs	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Frame_Shift_Del_p.A466fs	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	466_467	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAACAACGCCAGAGGTACTTC	0.470													---	---	---							
CCDC136	64753	broad.mit.edu	37	7	128454860	128454861	+	Frame_Shift_Ins	INS	-	C	C			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr7:128454860_128454861insC	uc003vnv.1	+	15	3299_3300	c.2932_2933insC	c.(2932-2934)GCCfs	p.A978fs	CCDC136_uc003vnu.1_Intron|CCDC136_uc003vnw.1_Intron|CCDC136_uc003vnx.1_Frame_Shift_Ins_p.A794fs|CCDC136_uc010llq.1_Frame_Shift_Ins_p.A347fs|CCDC136_uc003vny.1_Intron	NM_022742	NP_073579	Q96JN2	CC136_HUMAN	coiled-coil domain containing 136	978						integral to membrane	protein binding			ovary(2)	2						TGTCAAAGAAGCCCGGGGGAAG	0.540													---	---	---							
Unknown	0	broad.mit.edu	37	9	69876385	69876386	+	IGR	INS	-	TCT	TCT			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chr9:69876385_69876386insTCT								LOC100133920 (211436 upstream) : FOXD4L5 (299323 downstream)																							TTCTTCTCTTCTCTTCTTGTTT	0.277													---	---	---							
HUWE1	10075	broad.mit.edu	37	X	53587364	53587365	+	Frame_Shift_Ins	INS	-	G	G			TCGA-CR-6471-01A-11D-1870-08	TCGA-CR-6471-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c087e87f-867c-45dd-8645-5ab774e4827c	98949b5b-2be7-4de5-946a-3b2e3c630415	g.chrX:53587364_53587365insG	uc004dsp.2	-	56	7922_7923	c.7520_7521insC	c.(7519-7521)CCAfs	p.P2507fs	HUWE1_uc004dsn.2_Frame_Shift_Ins_p.P1331fs	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	2507					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TTCCTGGGGATGGGGGGATGTC	0.495													---	---	---							
