Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
C1orf168	199920	broad.mit.edu	37	1	57252852	57252852	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr1:57252852C>T	uc001cym.3	-	4	1355	c.949G>A	c.(949-951)GAG>AAG	p.E317K	C1orf168_uc009vzu.1_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	317										ovary(3)|skin(2)	5						ACTTACCTCTCTGGAGACAGG	0.488000													35	42					0	0	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367767	145367767	+	Missense_Mutation	SNP	G	A	A	rs77484671		TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr1:145367767G>A	uc001end.3	+	85	10623	c.10588G>A	c.(10588-10590)GAA>AAA	p.E3530K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3455											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		atcaaagaaggaaagaagaag	0.254000													3	49					0	0	0	0
TCHH	7062	broad.mit.edu	37	1	152080007	152080007	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr1:152080007G>A	uc001ezp.2	-	2	5686	c.5686C>T	c.(5686-5688)CGC>TGC	p.R1896C	TCHH_uc009wne.1_Missense_Mutation_p.R1896C	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1896					keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCGACTTGGCGGTGCCTCTGT	0.582000													72	63					0	0	0	0
RPTN	126638	broad.mit.edu	37	1	152128845	152128845	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr1:152128845C>G	uc001ezs.1	-	3	795	c.730G>C	c.(730-732)GAA>CAA	p.E244Q		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	244	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						GTATGTCTTTCAGACTGACCA	0.423000													100	115					0	0	0	0
FLG	2312	broad.mit.edu	37	1	152285143	152285143	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr1:152285143C>T	uc001ezu.1	-	3	2255	c.2219G>A	c.(2218-2220)CGA>CAA	p.R740Q	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	740	Filaggrin 4.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACTGGACCCTCGGTGTCCACT	0.577000									Ichthyosis				250	325					0	0	0	0
C1orf9	51430	broad.mit.edu	37	1	172558719	172558719	+	Silent	SNP	A	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr1:172558719A>G	uc001giq.3	+	18	2794	c.2478A>G	c.(2476-2478)CCA>CCG	p.P826P	C1orf9_uc010pmm.1_Silent_p.P826P|C1orf9_uc009wwd.2_Silent_p.P782P|C1orf9_uc010pmn.1_Intron|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	826					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		CAATAGTGCCACCAATAAATA	0.348000													4	20					0	0	0	0
ASPM	259266	broad.mit.edu	37	1	197069707	197069707	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr1:197069707G>A	uc001gtu.2	-	18	8931	c.8674C>T	c.(8674-8676)CAC>TAC	p.H2892Y	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Missense_Mutation_p.H740Y	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	2892					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						GCTCTGTAGTGATTTTGTAAA	0.343000													24	26					0	0	0	0
LOC100133308	100133308	broad.mit.edu	37	10	45652235	45652235	+	5'Flank	SNP	C	G	G	rs149362183		TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr10:45652235C>G	uc009xmq.1	-						uc001jca.3_RNA|uc001jcb.1_RNA|uc009xmr.1_RNA	NR_024472				Homo sapiens cDNA FLJ32851 fis, clone TESTI2003432.												0						GAAGGAACATCTGAAGGAACA	0.338000													6	29					0	0	0	0
PCDH15	65217	broad.mit.edu	37	10	56138640	56138640	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr10:56138640C>T	uc001jju.1	-	4	615	c.220G>A	c.(220-222)GAA>AAA	p.E74K	PCDH15_uc010qhq.1_Missense_Mutation_p.E79K|PCDH15_uc010qhr.1_Missense_Mutation_p.E74K|PCDH15_uc010qhs.1_Missense_Mutation_p.E79K|PCDH15_uc010qht.1_Missense_Mutation_p.E74K|PCDH15_uc010qhu.1_Missense_Mutation_p.E74K|PCDH15_uc001jjv.1_Missense_Mutation_p.E52K|PCDH15_uc010qhv.1_Missense_Mutation_p.E74K|PCDH15_uc010qhw.1_Missense_Mutation_p.E74K|PCDH15_uc010qhx.1_Missense_Mutation_p.E74K|PCDH15_uc010qhy.1_Missense_Mutation_p.E79K|PCDH15_uc010qhz.1_Missense_Mutation_p.E74K|PCDH15_uc010qia.1_Missense_Mutation_p.E52K|PCDH15_uc010qib.1_Missense_Mutation_p.E52K|PCDH15_uc001jjw.2_Missense_Mutation_p.E74K	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	74	Cadherin 1.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				AAAGAAAGTTCTATGGTGGGG	0.428000										HNSCC(58;0.16)			53	108					0	0	0	0
TTC18	118491	broad.mit.edu	37	10	75035242	75035242	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr10:75035242C>G	uc009xrc.2	-	23	2966	c.2845G>C	c.(2845-2847)GAG>CAG	p.E949Q	TTC18_uc001jty.2_Missense_Mutation_p.E949Q|TTC18_uc001jtv.3_Missense_Mutation_p.E53Q|TTC18_uc001jtw.3_Missense_Mutation_p.E53Q|TTC18_uc001jtx.2_Missense_Mutation_p.E330Q	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	949	TPR 4.						binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					AGGTATTCCTCTGCCTTGGCA	0.473000													76	76					0	0	0	0
CWF19L1	55280	broad.mit.edu	37	10	101997927	101997927	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr10:101997927C>T	uc001kqq.1	-	11	1193	c.1106G>A	c.(1105-1107)GGA>GAA	p.G369E	CWF19L1_uc001kqs.1_Missense_Mutation_p.G121E|CWF19L1_uc001kqr.1_Missense_Mutation_p.G369E|CWF19L1_uc001kqt.1_Missense_Mutation_p.G73E|CWF19L1_uc010qpn.1_Missense_Mutation_p.G232E|SNORA12_uc001kqu.1_5'Flank	NM_018294	NP_060764	Q69YN2	C19L1_HUMAN	CWF19-like 1, cell cycle control	369							catalytic activity				0		Colorectal(252;0.117)		Epithelial(162;3.78e-10)|all cancers(201;3.1e-08)		CTGGTAGTGTCCAATAGGCAG	0.498000													64	120					0	0	0	0
CNNM2	54805	broad.mit.edu	37	10	104678631	104678631	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr10:104678631G>C	uc001kwm.2	+	1	518	c.394G>C	c.(394-396)GAG>CAG	p.E132Q	CNNM2_uc001kwn.2_Missense_Mutation_p.E132Q|CNNM2_uc001kwl.2_Missense_Mutation_p.E132Q	NM_017649	NP_060119	Q9H8M5	CNNM2_HUMAN	cyclin M2 isoform 1	132					ion transport	integral to membrane				ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.103)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;7.89e-09)|all cancers(201;1.82e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		CAgcccgggggagcgcgggct	0.517000													20	19					0	0	0	0
DMBT1	1755	broad.mit.edu	37	10	124380632	124380632	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr10:124380632G>T	uc001lgk.1	+	41	5063	c.4957G>T	c.(4957-4959)GTG>TTG	p.V1653L	DMBT1_uc001lgl.1_Missense_Mutation_p.V1643L|DMBT1_uc001lgm.1_Missense_Mutation_p.V1025L|DMBT1_uc009xzz.1_Missense_Mutation_p.V1653L|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Missense_Mutation_p.V356L|DMBT1_uc009yac.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1653	SRCR 13.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TCGAGGCCGAGTGGAGGTCCT	0.562000													130	207					4.56115e-48	5.20731e-48	1	0
OR52B2	255725	broad.mit.edu	37	11	6190885	6190885	+	Silent	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr11:6190885G>A	uc010qzy.1	-	1	672	c.672C>T	c.(670-672)CTC>CTT	p.L224L		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	224	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACACTGCTCGGAGGATCAGTG	0.498000													15	21					0	0	0	0
PSMA1	5682	broad.mit.edu	37	11	14632514	14632514	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr11:14632514T>A	uc001mll.2	-	2	364	c.19A>T	c.(19-21)AAG>TAG	p.K7*		NM_148976	NP_683877	P25786	PSA1_HUMAN	proteasome alpha 1 subunit isoform 1	Error:Variant_position_missing_in_P25786_after_alignment					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|polysome|proteasome core complex, alpha-subunit complex	protein binding|RNA binding|threonine-type endopeptidase activity			upper_aerodigestive_tract(1)|skin(1)	2						ATTCTCACCTTCACCTTGCTG	0.418000													7	17					0	0	0	0
KCNC1	3746	broad.mit.edu	37	11	17793798	17793798	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr11:17793798A>G	uc001mnk.3	+	2	1212	c.1157A>G	c.(1156-1158)AAC>AGC	p.N386S	KCNC1_uc009yhc.1_Missense_Mutation_p.N386S	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	386						voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						CACTTTAAGAACATCCCCATC	0.617000													29	50					0	0	0	0
GTF2H1	2965	broad.mit.edu	37	11	18359808	18359808	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr11:18359808C>G	uc001moi.2	+	5	1194	c.500C>G	c.(499-501)TCT>TGT	p.S167C	GTF2H1_uc001moh.2_Missense_Mutation_p.S167C|GTF2H1_uc009yhm.2_Missense_Mutation_p.S51C	NM_001142307	NP_001135779	P32780	TF2H1_HUMAN	general transcription factor IIH, polypeptide 1,	167					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	protein binding				0						GTTGGCATTTCTGCTGCATTT	0.368000								NER					52	64					0	0	0	0
NPAS4	266743	broad.mit.edu	37	11	66191925	66191925	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr11:66191925C>T	uc001ohx.1	+	7	1740	c.1564C>T	c.(1564-1566)CCT>TCT	p.P522S	NPAS4_uc010rpc.1_Missense_Mutation_p.P312S	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	522					transcription, DNA-dependent		DNA binding|signal transducer activity				0						CTTCCCAGAGCCTCTGGGCAG	0.597000													6	216					0	0	0	0
PGR	5241	broad.mit.edu	37	11	100999748	100999748	+	Silent	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr11:100999748C>T	uc001pgh.2	-	1	797	c.54G>A	c.(52-54)CCG>CCA	p.P18P	PGR_uc001pgi.2_Silent_p.P18P|PGR_uc009yww.1_RNA|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA|uc010rum.1_5'Flank	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	18	Modulating, Pro-Rich.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	CGGGGGAGGGCGGGCCGCCCG	0.682000													6	0					0	0	0	0
KCNA6	3742	broad.mit.edu	37	12	4919430	4919430	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr12:4919430C>T	uc001qng.2	+	1	1089	c.223C>T	c.(223-225)CGC>TGC	p.R75C		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	75						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						CCGGCGAGTCCGCTTCTTCGA	0.632000										HNSCC(72;0.22)			30	29					0	0	0	0
BICD1	636	broad.mit.edu	37	12	32458713	32458713	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr12:32458713T>A	uc001rku.2	+	4	743	c.662T>A	c.(661-663)ATC>AAC	p.I221N	BICD1_uc001rkv.2_Missense_Mutation_p.I221N|BICD1_uc010skd.1_RNA	NM_001714	NP_001705	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 isoform 1	221	Potential.				anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			large_intestine(1)|central_nervous_system(1)	2	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			GAAGATGCCATCCGATTGAAA	0.463000													16	27					0	0	0	0
PPHLN1	51535	broad.mit.edu	37	12	42745801	42745801	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr12:42745801G>A	uc001rng.1	+	3	292	c.187G>A	c.(187-189)GAG>AAG	p.E63K	PPHLN1_uc001rmy.2_Missense_Mutation_p.E81K|PPHLN1_uc001rna.2_Intron|PPHLN1_uc001rne.2_Missense_Mutation_p.E70K|PPHLN1_uc001rnb.2_Missense_Mutation_p.E70K|PPHLN1_uc001rnd.2_Intron|PPHLN1_uc001rnc.2_Missense_Mutation_p.E63K|PPHLN1_uc001rnf.2_Missense_Mutation_p.E63K|PPHLN1_uc010skq.1_Intron|PPHLN1_uc010skr.1_Intron|PPHLN1_uc010sks.1_Intron|PPHLN1_uc010skt.1_Intron|PPHLN1_uc001rni.1_Intron|PPHLN1_uc001rnh.1_Intron|PPHLN1_uc010sku.1_Intron	NM_016488	NP_057572	Q8NEY8	PPHLN_HUMAN	periphilin 1 isoform 1	63					keratinization	cytoplasm|nucleus				ovary(1)|breast(1)	2	all_cancers(12;0.00049)|Breast(8;0.165)	Lung NSC(34;0.123)		GBM - Glioblastoma multiforme(48;0.0875)		AGACTATGACGAGGGCCGCAG	0.393000													23	18					0	0	0	0
MLL2	8085	broad.mit.edu	37	12	49436602	49436602	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr12:49436602C>A	uc001rta.3	-	26	5704	c.5704G>T	c.(5704-5706)GAA>TAA	p.E1902*		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1902					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TGTTCTCGTTCAGAGCCCAGA	0.547000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			36	37					1.36615e-20	1.52164e-20	1	0
KRT73	319101	broad.mit.edu	37	12	53005099	53005099	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr12:53005099C>G	uc001sas.2	-	6	1034	c.999G>C	c.(997-999)CAG>CAC	p.Q333H		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	333	Rod.|Coil 2.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		CGGCTGCTAGCTGCAGCTCCT	0.547000													25	27					0	0	0	0
ACADS	35	broad.mit.edu	37	12	121175211	121175211	+	Missense_Mutation	SNP	C	T	T	rs17848085		TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr12:121175211C>T	uc001tza.3	+	4	531	c.413C>T	c.(412-414)GCG>GTG	p.A138V	ACADS_uc010szl.1_Missense_Mutation_p.A138V|ACADS_uc001tzb.3_Missense_Mutation_p.A65V	NM_000017	NP_000008	P16219	ACADS_HUMAN	short-chain acyl-CoA dehydrogenase precursor	138						mitochondrial matrix	butyryl-CoA dehydrogenase activity			central_nervous_system(2)	2	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)	Lung NSC(355;0.163)			NADH(DB00157)	CAGAAGCAGGCGTGGGTCACG	0.622000													18	31					0	0	0	0
PSPC1	55269	broad.mit.edu	37	13	20277482	20277482	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr13:20277482G>C	uc001uml.2	-	9	1591	c.1405C>G	c.(1405-1407)CAA>GAA	p.Q469E	PSPC1_uc001umj.1_Intron|PSPC1_uc001umk.1_Intron	NM_001042414	NP_001035879	Q8WXF1	PSPC1_HUMAN	paraspeckle protein 1	469	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleolus	nucleotide binding|protein binding|RNA binding			breast(1)	1		all_cancers(29;1.25e-22)|all_lung(29;1.97e-20)|all_epithelial(30;2.29e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;4.63e-06)|Epithelial(112;2.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00256)|Lung(94;0.00975)|LUSC - Lung squamous cell carcinoma(192;0.0483)		GGTGGTCCTTGAGGAAATCTG	0.438000													11	21					0	0	0	0
BRCA2	675	broad.mit.edu	37	13	32972674	32972674	+	Missense_Mutation	SNP	G	A	A	rs28897761		TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr13:32972674G>A	uc001uub.1	+	27	10251	c.10024G>A	c.(10024-10026)GAA>AAA	p.E3342K		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	3342					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		AATAGCTGACGAAGAACTTGC	0.358000			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			10	27					0	0	0	0
ZIC2	7546	broad.mit.edu	37	13	100635350	100635350	+	Silent	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr13:100635350C>T	uc001von.2	+	1	1032	c.1032C>T	c.(1030-1032)TTC>TTT	p.F344F		NM_007129	NP_009060	O95409	ZIC2_HUMAN	zinc finger protein of the cerebellum 2	344	C2H2-type 3.				brain development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|visual perception	cytoplasm|nucleus	chromatin DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					GCAAAGTCTTCGCGCGCTCCG	0.617000													27	41					0	0	0	0
EDDM3A	10876	broad.mit.edu	37	14	21216174	21216174	+	Silent	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr14:21216174C>T	uc001vyb.2	+	2	502	c.435C>T	c.(433-435)ATC>ATT	p.I145I	EDDM3A_uc001vyc.2_Silent_p.I145I	NM_006683	NP_006674	Q14507	EP3A_HUMAN	human epididymis-specific 3 alpha precursor	145					sperm displacement	extracellular space					0						TAGAACCTATCAGCAACTAGA	0.453000													22	24					0	0	0	0
FSCB	84075	broad.mit.edu	37	14	44975037	44975037	+	Missense_Mutation	SNP	C	T	T	rs138964489		TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr14:44975037C>T	uc001wvn.2	-	1	1463	c.1154G>A	c.(1153-1155)CGG>CAG	p.R385Q		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	385	Pro-rich.					cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		TGAGGGAGACCGAATTTCACC	0.527000													44	77					0	0	0	0
MAP3K9	4293	broad.mit.edu	37	14	71267584	71267584	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr14:71267584C>T	uc001xmm.2	-	2	620	c.620G>A	c.(619-621)AGA>AAA	p.R207K	MAP3K9_uc001xml.2_Missense_Mutation_p.R207K	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	207	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		ACATACCCCTCTTAGGGCAAT	0.532000													41	49					0	0	0	0
DNAL1	83544	broad.mit.edu	37	14	74125657	74125657	+	Silent	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr14:74125657C>T	uc001xoq.3	+	3	315	c.150C>T	c.(148-150)TGC>TGT	p.C50C	DNAL1_uc010aru.2_Silent_p.C11C|DNAL1_uc010arv.2_Intron	NM_031427	NP_113615	Q4LDG9	DNAL1_HUMAN	axonemal dynein light chain 1	50	LRR 1.										0				BRCA - Breast invasive adenocarcinoma(234;0.00384)|KIRC - Kidney renal clear cell carcinoma(182;0.095)		TTGCTAATTGCGAGTAAGTTC	0.403000													122	183					0	0	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102509067	102509067	+	Silent	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr14:102509067C>T	uc001yks.2	+	69	12659	c.12495C>T	c.(12493-12495)CCC>CCT	p.P4165P		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	4165	AAA 6 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GCAGCATTCCCGTCTCACGGA	0.557000													13	14					0	0	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40259747	40259747	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr15:40259747C>T	uc001zkm.1	+	9	1270	c.1220C>T	c.(1219-1221)GCT>GTT	p.A407V	EIF2AK4_uc001zkl.2_Missense_Mutation_p.A407V|EIF2AK4_uc010bbj.1_Missense_Mutation_p.A136V	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	407	Protein kinase 1.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		AGGTACACAGCTCAGCTCCTG	0.532000													26	36					0	0	0	0
C15orf59	388135	broad.mit.edu	37	15	74043429	74043429	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr15:74043429C>T	uc002avy.2	-	1	388	c.43G>A	c.(43-45)GAC>AAC	p.D15N		NM_001039614	NP_001034703	Q2T9L4	CO059_HUMAN	hypothetical protein LOC388135	15										pancreas(1)	1						CTGCTGGGGTCGTCACTGGGC	0.652000													34	49					0	0	0	0
SOX8	30812	broad.mit.edu	37	16	1035131	1035131	+	Silent	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr16:1035131C>T	uc002ckn.2	+	3	1201	c.1086C>T	c.(1084-1086)AGC>AGT	p.S362S		NM_014587	NP_055402	P57073	SOX8_HUMAN	SRY (sex determining region Y)-box 8	362					adipose tissue development|enteric nervous system development|fat cell differentiation|in utero embryonic development|metanephric nephron tubule formation|morphogenesis of a branching epithelium|negative regulation of apoptosis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|neural crest cell migration|oligodendrocyte differentiation|osteoblast differentiation|peripheral nervous system development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of gliogenesis|positive regulation of osteoblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone levels|renal vesicle induction|retinal rod cell differentiation|Sertoli cell development|signal transduction|spermatogenesis|ureter morphogenesis	cytoplasm|nucleus				central_nervous_system(1)|skin(1)	2		Hepatocellular(780;0.00308)				GTTCCTGCAGCGGCCAGTCCA	0.622000													4	1					0	0	0	0
Unknown	0	broad.mit.edu	37	16	53404765	53404765	+	RNA	SNP	A	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr16:53404765A>G	uc002ehh.2	-	1		c.118T>C								Homo sapiens mRNA; cDNA DKFZp313P036 (from clone DKFZp313P036).																		TGTGTTTTGCACCTTGCTCTG	0.388000													15	3					0	0	0	0
NLRC5	84166	broad.mit.edu	37	16	57063689	57063689	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr16:57063689C>T	uc002ekk.1	+	9	2473	c.2248C>T	c.(2248-2250)CGG>TGG	p.R750W	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Intron|NLRC5_uc002ekl.2_Missense_Mutation_p.R555W|NLRC5_uc002ekm.2_Missense_Mutation_p.R555W|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	750	LRR 3.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				TCGCAGTTTTCGGGACAACCA	0.582000													8	8					0	0	0	0
GFOD2	81577	broad.mit.edu	37	16	67709163	67709163	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr16:67709163G>C	uc002eub.2	-	3	1348	c.1053C>G	c.(1051-1053)ATC>ATG	p.I351M	GFOD2_uc002eua.1_RNA|GFOD2_uc002euc.2_Missense_Mutation_p.I246M	NM_030819	NP_110446	Q3B7J2	GFOD2_HUMAN	glucose-fructose oxidoreductase domain	351						proteinaceous extracellular matrix	binding|oxidoreductase activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0151)|Epithelial(162;0.0505)|all cancers(182;0.242)		TCGACCTCTTGATGGCATCCA	0.657000													35	15					0	0	0	0
MBTPS1	8720	broad.mit.edu	37	16	84132744	84132744	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr16:84132744G>A	uc002fhi.2	-	3	837	c.335C>T	c.(334-336)GCG>GTG	p.A112V		NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1	112					cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						TAGCAGCCCCGCTTTCTGTTT	0.423000													9	53					0	0	0	0
MYH2	4620	broad.mit.edu	37	17	10424679	10424679	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr17:10424679C>T	uc010coi.2	-	40	5872	c.5744G>A	c.(5743-5745)CGG>CAG	p.R1915Q	uc002gml.1_Intron|MYH1_uc002gmo.2_5'Flank|MYH2_uc002gmp.3_Missense_Mutation_p.R1915Q|MYH2_uc010coj.2_Missense_Mutation_p.R682Q	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1915	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AATGTCAGCCCGTTCCTCGGC	0.488000													56	115					0	0	0	0
PIPOX	51268	broad.mit.edu	37	17	27382170	27382170	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr17:27382170C>A	uc002hdr.1	+	6	1223	c.897C>A	c.(895-897)AGC>AGA	p.S299R		NM_016518	NP_057602	Q9P0Z9	SOX_HUMAN	pipecolic acid oxidase	299					tetrahydrofolate metabolic process	peroxisome	L-pipecolate oxidase activity|sarcosine oxidase activity				0	Lung NSC(42;0.015)		Epithelial(11;9.87e-06)|BRCA - Breast invasive adenocarcinoma(11;3.92e-05)|all cancers(11;5.59e-05)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)		Glycine(DB00145)	AGATCCTGAGCAGCTTTGTCA	0.602000													17	138					2.37509e-13	2.62409e-13	1	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274150	39274150	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr17:39274150T>A	uc002hvz.2	-	1	457	c.418A>T	c.(418-420)AGC>TGC	p.S140C		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	140	27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ctggagatgctgcagctgggg	0.129000													4	37					0	0	0	0
ABCA10	10349	broad.mit.edu	37	17	67153022	67153022	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr17:67153022G>C	uc010dfa.1	-	29	4285	c.3406C>G	c.(3406-3408)CTG>GTG	p.L1136V	ABCA10_uc010wqs.1_Missense_Mutation_p.L128V|ABCA10_uc010wqt.1_RNA	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	1136					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					TTCATTTCCAGACACCTTATG	0.289000													16	12					0	0	0	0
ABCA10	10349	broad.mit.edu	37	17	67171572	67171572	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr17:67171572C>T	uc010dfa.1	-	24	3731	c.2852G>A	c.(2851-2853)GGC>GAC	p.G951D	ABCA10_uc010wqs.1_5'UTR|ABCA10_uc010wqt.1_RNA	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	951					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					GCTGCTCATGCCGATAAAAGG	0.343000													4	84					0	0	0	0
RECQL5	9400	broad.mit.edu	37	17	73661241	73661241	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr17:73661241C>T	uc010dgl.2	-	3	298	c.142G>A	c.(142-144)GTC>ATC	p.V48I	RECQL5_uc010dgk.2_Intron|RECQL5_uc002jpb.1_Missense_Mutation_p.V48I|RECQL5_uc002joz.3_Missense_Mutation_p.V48I|RECQL5_uc002jpa.3_Missense_Mutation_p.V48I	NM_004259	NP_004250	O94762	RECQ5_HUMAN	RecQ protein-like 5 isoform 1	48	Helicase ATP-binding.				DNA recombination|DNA repair	cytoplasm|nuclear membrane|nucleolus|nucleoplasm	ATP binding|ATP-dependent helicase activity|DNA helicase activity|nucleic acid binding			kidney(3)	3	all_cancers(13;2.73e-08)|Breast(9;6.04e-09)|all_epithelial(9;6.79e-09)		all cancers(21;1.15e-06)|Epithelial(20;2.19e-06)|Lung(188;0.101)|LUSC - Lung squamous cell carcinoma(166;0.112)			CACACAAAGACGTCCTTGTTA	0.378000								Other_identified_genes_with_known_or_suspected_DNA_repair_function					45	145					0	0	0	0
MC5R	4161	broad.mit.edu	37	18	13826656	13826656	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr18:13826656C>T	uc010xaf.1	+	1	892	c.892C>T	c.(892-894)CGC>TGC	p.R298C		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	298	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						ATATGCCTTCCGCAGCCAAGA	0.483000													60	73					0	0	0	0
FEM1A	55527	broad.mit.edu	37	19	4793183	4793183	+	Silent	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:4793183G>A	uc002mbf.2	+	1	1456	c.1317G>A	c.(1315-1317)GCG>GCA	p.A439A	uc002mbg.1_RNA	NM_018708	NP_061178	Q9BSK4	FEM1A_HUMAN	fem-1 homolog a	439					regulation of ubiquitin-protein ligase activity	cytoplasm	binding|ubiquitin-protein ligase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		TCTCCTTCGCGGAACTCTTCT	0.622000													49	83					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9083519	9083519	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:9083519C>T	uc002mkp.2	-	1	8500	c.8296G>A	c.(8296-8298)GAA>AAA	p.E2766K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2766	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTGAGTTTTCAGAACTCTGA	0.502000													27	39					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9084696	9084696	+	Silent	SNP	C	T	T	rs151239264	by1000genomes	TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:9084696C>T	uc002mkp.2	-	1	7323	c.7119G>A	c.(7117-7119)CTG>CTA	p.L2373L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2373	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGTGTTGATCAGATCAGAAG	0.443000													23	27					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9085596	9085596	+	Silent	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:9085596C>T	uc002mkp.2	-	1	6423	c.6219G>A	c.(6217-6219)CTG>CTA	p.L2073L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2073	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGCCTGAGGACAGTGCCTCAG	0.473000													63	101					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9085982	9085982	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:9085982C>T	uc002mkp.2	-	1	6037	c.5833G>A	c.(5833-5835)GAA>AAA	p.E1945K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1945	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAATGACTTCTTCCACTGGA	0.488000													30	39					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9086220	9086220	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:9086220C>G	uc002mkp.2	-	1	5799	c.5595G>C	c.(5593-5595)TTG>TTC	p.L1865F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1865	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CACCAGTATTCAATGACCTGT	0.502000													20	28					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9086743	9086743	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:9086743C>T	uc002mkp.2	-	1	5276	c.5072G>A	c.(5071-5073)AGA>AAA	p.R1691K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1691	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTGATGCTTCTTCCTGGAGC	0.483000													53	56					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9086890	9086890	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:9086890C>A	uc002mkp.2	-	1	5129	c.4925G>T	c.(4924-4926)GGA>GTA	p.G1642V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1642	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGGGTGACTCCACTACTACT	0.512000													59	99					1.00798e-23	1.14127e-23	1	0
MUC16	94025	broad.mit.edu	37	19	9087590	9087590	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:9087590C>G	uc002mkp.2	-	1	4429	c.4225G>C	c.(4225-4227)GAG>CAG	p.E1409Q		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1409	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACTGTGTCTCAAATCCAGAT	0.473000													54	78					0	0	0	0
TYK2	7297	broad.mit.edu	37	19	10473005	10473005	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:10473005C>T	uc002moc.3	-	11	1982	c.1604G>A	c.(1603-1605)GGC>GAC	p.G535D	TYK2_uc010dxe.2_Missense_Mutation_p.G350D|TYK2_uc002mod.2_Missense_Mutation_p.G535D	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	535					intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			CAGCAAGCAGCCCTGCAAGGC	0.652000													3	40					0	0	0	0
CNN1	1264	broad.mit.edu	37	19	11657661	11657661	+	Silent	SNP	C	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:11657661C>A	uc002msc.1	+	4	431	c.267C>A	c.(265-267)GGC>GGA	p.G89G	CNN1_uc010xmb.1_Silent_p.G39G|CNN1_uc010xmc.1_Silent_p.G39G	NM_001299	NP_001290	P51911	CNN1_HUMAN	calponin 1, basic, smooth muscle	89	CH.				actomyosin structure organization|regulation of smooth muscle contraction	cytoskeleton	actin binding|calmodulin binding				0						AGAACATCGGCAACTTCATCA	0.572000													8	75					5.18039e-06	5.50166e-06	1	0
GRAMD1A	57655	broad.mit.edu	37	19	35512474	35512474	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:35512474C>T	uc010xse.1	+	14	1681	c.1544C>T	c.(1543-1545)TCG>TTG	p.S515L	GRAMD1A_uc002nxk.2_Missense_Mutation_p.S508L|GRAMD1A_uc002nxl.2_Missense_Mutation_p.S281L|GRAMD1A_uc010xsf.1_Missense_Mutation_p.S520L|GRAMD1A_uc002nxm.1_RNA|GRAMD1A_uc002nxn.1_Missense_Mutation_p.S130L	NM_020895	NP_065946	Q96CP6	GRM1A_HUMAN	GRAM domain containing 1A isoform 1	515						integral to membrane					0	all_lung(56;2.66e-08)|Lung NSC(56;4.13e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			GAGAAGAACTCGTGGAGCGGC	0.582000													31	46					0	0	0	0
LIN37	55957	broad.mit.edu	37	19	36245020	36245020	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:36245020C>T	uc002obm.2	+	8	661	c.547C>T	c.(547-549)CCA>TCA	p.P183S	uc002obl.2_5'Flank	NM_019104	NP_061977	Q96GY3	LIN37_HUMAN	lin-37 homolog	183	Pro-rich.						protein binding				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CATCCCATCTCCACTGCAGCC	0.627000													24	28					0	0	0	0
HNRNPL	3191	broad.mit.edu	37	19	39330892	39330892	+	Silent	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:39330892G>A	uc010xul.1	-	8	1088	c.1077C>T	c.(1075-1077)TAC>TAT	p.Y359Y	HNRNPL_uc010ege.1_Silent_p.Y15Y|HNRNPL_uc002ojj.1_Silent_p.Y15Y|HNRNPL_uc002ojo.1_5'Flank|HNRNPL_uc002ojk.2_Silent_p.Y15Y|HNRNPL_uc002ojl.2_Silent_p.Y15Y|HNRNPL_uc010xum.1_Silent_p.Y226Y|HNRNPL_uc002ojp.1_Silent_p.Y15Y|HNRNPL_uc010xun.1_Missense_Mutation_p.T67M	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	359	Pro-rich.				nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			ACTGGGGGCCGTAGCGACTTG	0.652000													5	6					0	0	0	0
PSG9	5678	broad.mit.edu	37	19	43763286	43763286	+	Silent	SNP	C	T	T	rs4028446		TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:43763286C>T	uc002owd.3	-	4	810	c.711G>A	c.(709-711)CCG>CCA	p.P237P	PSG9_uc002owe.3_Intron|PSG9_uc010xwm.1_Silent_p.S144S|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Intron|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	237					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TGGGCAGCTTCGCTGTGTGGA	0.493000													74	146					0	0	0	0
ZNF667	63934	broad.mit.edu	37	19	56969527	56969527	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:56969527G>T	uc002qnd.2	-	4	412	c.250C>A	c.(250-252)CCT>ACT	p.P84T	ZNF667_uc010etl.2_5'UTR|ZNF667_uc002qne.2_Missense_Mutation_p.P84T|ZNF667_uc010etm.2_5'UTR	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	84	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		CACTCACCAGGAGCCCGGCGT	0.333000													6	73					3.59834e-05	3.79209e-05	1	0
TPO	7173	broad.mit.edu	37	2	1459985	1459985	+	Silent	SNP	A	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr2:1459985A>G	uc002qww.2	+	7	841	c.750A>G	c.(748-750)AAA>AAG	p.K250K	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Silent_p.K250K|TPO_uc002qwr.2_Silent_p.K250K|TPO_uc002qwx.2_Silent_p.K250K|TPO_uc010yio.1_Silent_p.K250K|TPO_uc010yip.1_Silent_p.K250K	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	250	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GCACCAGCAAAGCTGCCTTCG	0.483000													11	20					0	0	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43871918	43871918	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr2:43871918G>A	uc010yny.1	+	2	189	c.106G>A	c.(106-108)GAG>AAG	p.E36K	PLEKHH2_uc002rte.3_Missense_Mutation_p.E36K|PLEKHH2_uc002rtf.3_Missense_Mutation_p.E36K	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	36	Potential.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CAAGATACGAGAGCTTTTAGC	0.398000													20	27					0	0	0	0
Unknown	0	broad.mit.edu	37	2	89513043	89513043	+	RNA	SNP	A	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr2:89513043A>G	uc010ytr.1	-	23		c.2845T>C			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AAGTGGATGCAGCATAGATCA	0.512000													70	90					0	0	0	0
KIAA1310	55683	broad.mit.edu	37	2	97274403	97274403	+	Splice_Site	SNP	T	C	C			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr2:97274403T>C	uc002swn.3	-	14	1731	c.1585_splice	c.e14-1	p.D529_splice	KIAA1310_uc002swh.3_Splice_Site_p.D417_splice|KIAA1310_uc002swi.3_Splice_Site_p.D430_splice|KIAA1310_uc002swj.3_Splice_Site|KIAA1310_uc002swk.3_Splice_Site_p.D442_splice|KIAA1310_uc010fhz.2_Splice_Site_p.D323_splice|KIAA1310_uc002swl.3_Splice_Site_p.D430_splice|KIAA1310_uc002swm.3_Splice_Site|KIAA1310_uc010yur.1_Splice_Site_p.D323_splice|KIAA1310_uc002swp.1_Splice_Site_p.D430_splice	NM_001115016	NP_001108488	Q9P2N6	K1310_HUMAN	hypothetical protein LOC55683 isoform a												0						GGAGAGATCCTGAGTAAGGTG	0.522000													25	35					0	0	0	0
FAM178B	51252	broad.mit.edu	37	2	97543732	97543732	+	Silent	SNP	C	T	T	rs145363262		TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr2:97543732C>T	uc002sxl.3	-	16	2153	c.1806G>A	c.(1804-1806)ACG>ACA	p.T602T	FAM178B_uc002sxi.3_Silent_p.T93T|FAM178B_uc002sxk.3_Silent_p.T317T|FAM178B_uc002sxj.3_Silent_p.T74T	NM_001122646	NP_001116118	Q8IXR5	F178B_HUMAN	hypothetical protein LOC51252 isoform A	782											0						CCCGGATCTGCGTGCTGATGT	0.647000													15	25					0	0	0	0
TSGA10	80705	broad.mit.edu	37	2	99721848	99721848	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr2:99721848C>G	uc002szg.3	-	7	1061	c.433G>C	c.(433-435)GAG>CAG	p.E145Q	TSGA10_uc002szh.3_Missense_Mutation_p.E145Q|TSGA10_uc002szi.3_Missense_Mutation_p.E145Q|TSGA10_uc010fin.1_Missense_Mutation_p.E145Q|TSGA10_uc010yvn.1_Missense_Mutation_p.E145Q	NM_182911	NP_878915	Q9BZW7	TSG10_HUMAN	testis specific, 10	145					spermatogenesis	cytoplasm|nuclear membrane				ovary(1)|central_nervous_system(1)	2						TCCAGCTCCTCTATCCTTTGT	0.338000													25	42					0	0	0	0
R3HDM1	23518	broad.mit.edu	37	2	136399147	136399147	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr2:136399147C>G	uc002tuo.2	+	15	1631	c.1261C>G	c.(1261-1263)CTT>GTT	p.L421V	R3HDM1_uc010fni.2_Missense_Mutation_p.L419V|R3HDM1_uc002tup.2_Missense_Mutation_p.L365V|R3HDM1_uc010zbh.1_Intron	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	421							nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		TACAGGCTCTCTTTCTCACAT	0.438000													46	65					0	0	0	0
SCN9A	6335	broad.mit.edu	37	2	167143021	167143021	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr2:167143021C>T	uc010fpl.2	-	11	1768	c.1427G>A	c.(1426-1428)AGA>AAA	p.R476K	uc002udp.2_Intron|SCN9A_uc002udr.1_Missense_Mutation_p.R347K|SCN9A_uc002uds.1_Missense_Mutation_p.R347K|SCN9A_uc002udt.1_Missense_Mutation_p.R347K	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	476						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TCTGTTTCTTCTTTCTTTAGC	0.408000													25	29					0	0	0	0
DNAH7	56171	broad.mit.edu	37	2	196602680	196602680	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr2:196602680G>A	uc002utj.3	-	65	12141	c.12040C>T	c.(12040-12042)CGA>TGA	p.R4014*	DNAH7_uc002uti.3_Nonsense_Mutation_p.R497*	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	4014					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GCTACACCTCGTCCAATCCAG	0.433000													21	24					0	0	0	0
ALS2CR11	151254	broad.mit.edu	37	2	202430560	202430560	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr2:202430560G>A	uc002uye.2	-	9	917	c.869C>T	c.(868-870)GCA>GTA	p.A290V	ALS2CR11_uc002uyf.2_Missense_Mutation_p.A290V|ALS2CR11_uc010fti.2_Missense_Mutation_p.A290V	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	290										large_intestine(1)|ovary(1)|skin(1)	3						GGATAAGAATGCTGGATATTC	0.393000													7	17					0	0	0	0
BCS1L	617	broad.mit.edu	37	2	219527690	219527690	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr2:219527690G>A	uc002vio.2	+	7	1392	c.974G>A	c.(973-975)CGC>CAC	p.R325H	BCS1L_uc002vip.2_Missense_Mutation_p.R325H|BCS1L_uc002viq.2_Missense_Mutation_p.R325H|BCS1L_uc010fvu.2_Missense_Mutation_p.R325H|BCS1L_uc010fvv.2_Missense_Mutation_p.R325H|BCS1L_uc002vir.2_Missense_Mutation_p.R325H|BCS1L_uc002vis.2_Missense_Mutation_p.R325H	NM_004328	NP_004319	Q9Y276	BCS1_HUMAN	BCS1-like	325	Mitochondrial matrix (Potential).				mitochondrial respiratory chain complex I assembly|mitochondrial respiratory chain complex III assembly|mitochondrial respiratory chain complex IV assembly	integral to membrane|mitochondrial respiratory chain complex III	ATP binding|nucleoside-triphosphatase activity|protein binding				0		Renal(207;0.0474)		Epithelial(149;7.12e-07)|all cancers(144;0.000131)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACCGAGGCCCGCATCGTGTTC	0.582000													4	96					0	0	0	0
ACCN4	55515	broad.mit.edu	37	2	220396543	220396543	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr2:220396543C>T	uc002vma.2	+	2	1041	c.1027C>T	c.(1027-1029)CGG>TGG	p.R343W	ACCN4_uc010fwi.1_Missense_Mutation_p.R343W|ACCN4_uc010fwj.1_Missense_Mutation_p.R343W|ACCN4_uc002vly.1_Missense_Mutation_p.R343W|ACCN4_uc002vlz.2_Missense_Mutation_p.R343W|ACCN4_uc002vmb.2_5'UTR	NM_182847	NP_878267	Q96FT7	ACCN4_HUMAN	amiloride-sensitive cation channel 4 isoform 2	343	Extracellular (Potential).					integral to plasma membrane	sodium channel activity|sodium ion transmembrane transporter activity			ovary(2)	2		Renal(207;0.0183)		Epithelial(149;5.47e-10)|all cancers(144;9e-08)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.0086)|READ - Rectum adenocarcinoma(5;0.156)		GCTGCCCAGCCGGGCAGGGGG	0.627000													33	55					0	0	0	0
DNMT3B	1789	broad.mit.edu	37	20	31379433	31379433	+	Silent	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr20:31379433G>A	uc002wyc.2	+	8	1161	c.840G>A	c.(838-840)CTG>CTA	p.L280L	DNMT3B_uc010ztx.1_RNA|DNMT3B_uc010zty.1_RNA|DNMT3B_uc002wyd.2_Silent_p.L280L|DNMT3B_uc002wye.2_Silent_p.L280L|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Silent_p.L238L|DNMT3B_uc010zua.1_Silent_p.L204L|DNMT3B_uc002wyf.2_Silent_p.L292L|DNMT3B_uc002wyg.2_5'UTR	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	280	PWWP.|Interaction with DNMT1 and DNMT3A.				negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						TGGTGGCACTGGGGCTGTTCA	0.483000													18	154					0	0	0	0
C20orf185	359710	broad.mit.edu	37	20	31651460	31651460	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr20:31651460G>A	uc002wym.1	+	6	631	c.631G>A	c.(631-633)GAG>AAG	p.E211K		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	211	Leu-rich.				innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						TGTGGTGAATGAGCTCCTGGG	0.587000													33	190					0	0	0	0
HIRA	7290	broad.mit.edu	37	22	19346902	19346902	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr22:19346902C>T	uc002zpf.1	-	18	2411	c.2191G>A	c.(2191-2193)GAG>AAG	p.E731K	HIRA_uc011agx.1_Missense_Mutation_p.E597K|HIRA_uc010grn.1_Intron|HIRA_uc010gro.1_Missense_Mutation_p.E687K|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	731	Interaction with PAX3 (By similarity).|Interaction with histone H2B.				chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					AGTACCGTCTCCCACTCCTTC	0.602000													38	35					0	0	0	0
TRMT2A	27037	broad.mit.edu	37	22	20103246	20103246	+	Silent	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr22:20103246C>T	uc002zrk.1	-	4	872	c.657G>A	c.(655-657)AAG>AAA	p.K219K	TRMT2A_uc002zrl.1_Silent_p.K219K|TRMT2A_uc002zrm.1_Silent_p.K41K|TRMT2A_uc002zrn.1_Silent_p.K219K|TRMT2A_uc011ahk.1_Silent_p.K219K|RANBP1_uc011ahl.1_5'Flank|RANBP1_uc002zro.1_5'Flank|RANBP1_uc002zrp.2_5'Flank	NM_182984	NP_892029	Q8IZ69	TRM2A_HUMAN	HpaII tiny fragments locus 9C	219					RNA processing		nucleotide binding|RNA binding|RNA methyltransferase activity			breast(1)	1						CCTTGTTGTGCTTGTGCCTCT	0.602000													10	19					0	0	0	0
ASPHD2	57168	broad.mit.edu	37	22	26829615	26829615	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr22:26829615G>C	uc003acg.2	+	2	431	c.34G>C	c.(34-36)GAT>CAT	p.D12H		NM_020437	NP_065170	Q6ICH7	ASPH2_HUMAN	aspartate beta-hydroxylase domain containing 2	12	Cytoplasmic (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity			ovary(1)	1						CCCGAGGACTGATTGTCTGAC	0.652000													11	20					0	0	0	0
ARFGAP3	26286	broad.mit.edu	37	22	43206867	43206867	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr22:43206867G>T	uc003bdd.2	-	12	1368	c.1148C>A	c.(1147-1149)ACC>AAC	p.T383N	ARFGAP3_uc010gzf.2_Missense_Mutation_p.T339N	NM_014570	NP_055385	Q9NP61	ARFG3_HUMAN	ADP-ribosylation factor GTPase activating	383					intracellular protein transport|protein secretion|regulation of ARF GTPase activity|vesicle-mediated transport	cytosol|Golgi membrane	ARF GTPase activator activity|protein transporter activity|zinc ion binding			breast(1)	1						ATCTTTGCTGGTCTCTTTTTT	0.428000													50	67					2.29192e-23	2.57371e-23	1	0
TBC1D22A	25771	broad.mit.edu	37	22	47393590	47393590	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr22:47393590G>A	uc003bib.2	+	10	1321	c.1186G>A	c.(1186-1188)GTG>ATG	p.V396M	TBC1D22A_uc010haf.2_Missense_Mutation_p.V366M|TBC1D22A_uc003bic.2_Missense_Mutation_p.V337M|TBC1D22A_uc003bie.2_Missense_Mutation_p.V318M|TBC1D22A_uc003bid.2_RNA|TBC1D22A_uc010hag.2_RNA|TBC1D22A_uc003bif.2_Missense_Mutation_p.V349M	NM_014346	NP_055161	Q8WUA7	TB22A_HUMAN	TBC1 domain family, member 22A	396	Rab-GAP TBC.					intracellular	protein homodimerization activity|Rab GTPase activator activity			ovary(1)	1		all_cancers(38;4.44e-05)|all_epithelial(38;0.000507)|Breast(42;0.0488)|all_lung(38;0.0682)|Ovarian(80;0.0731)|all_neural(38;0.0966)|Glioma(61;0.222)|Lung SC(80;0.236)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0347)|BRCA - Breast invasive adenocarcinoma(115;0.231)		AGAAGAACTCGTGAGCCGGAT	0.507000													43	52					0	0	0	0
TTLL3	26140	broad.mit.edu	37	3	9877030	9877030	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr3:9877030C>T	uc003btg.2	+	13	2392	c.2176C>T	c.(2176-2178)CGA>TGA	p.R726*	ARPC4_uc003btc.1_Intron|TTLL3_uc003btd.3_3'UTR|TTLL3_uc003btf.3_3'UTR|TTLL3_uc003bth.3_3'UTR|TTLL3_uc011atj.1_3'UTR|TTLL3_uc003btj.3_3'UTR|TTLL3_uc003bti.3_3'UTR	NM_001025930	NP_001021100	Q9Y4R7	TTLL3_HUMAN	tubulin tyrosine ligase-like family, member 3	726					axoneme assembly|cilium assembly|protein polyglycylation	cilium axoneme|cytoplasm|microtubule	protein-glycine ligase activity, initiating|tubulin-tyrosine ligase activity			large_intestine(2)	2	Medulloblastoma(99;0.227)					GCCCCTGCTTCGATTCCCCAC	0.547000													45	12					0	0	0	0
SATB1	6304	broad.mit.edu	37	3	18391090	18391090	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr3:18391090G>T	uc003cbh.2	-	11	3599	c.1864C>A	c.(1864-1866)CCT>ACT	p.P622T	SATB1_uc003cbi.2_Missense_Mutation_p.P654T|SATB1_uc003cbj.2_Missense_Mutation_p.P622T	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	622					cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						GGGAGCCGAGGGCCTGTCTGT	0.468000													22	4					2.70639e-06	2.89669e-06	1	0
ENTPD3	956	broad.mit.edu	37	3	40457535	40457535	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr3:40457535G>T	uc003ckd.3	+	7	894	c.802G>T	c.(802-804)GAG>TAG	p.E268*	ENTPD3_uc010hhy.2_Nonsense_Mutation_p.E268*|uc003cke.3_Intron	NM_001248	NP_001239	O75355	ENTP3_HUMAN	ectonucleoside triphosphate diphosphohydrolase	268	Extracellular (Potential).					integral to membrane	ATP binding|hydrolase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0605)|Kidney(284;0.0758)		GAATGAGGCTGAGAAGAAGTT	0.552000													15	5					4.14922e-12	4.54754e-12	1	0
USP19	10869	broad.mit.edu	37	3	49149394	49149394	+	Silent	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr3:49149394G>A	uc003cwd.1	-	19	2705	c.2544C>T	c.(2542-2544)GCC>GCT	p.A848A	USP19_uc003cwa.2_Silent_p.A656A|USP19_uc003cvz.3_Silent_p.A951A|USP19_uc011bcg.1_Silent_p.A939A|USP19_uc003cwb.2_Intron|USP19_uc003cwc.1_Silent_p.A606A|USP19_uc011bch.1_Silent_p.A949A	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	848	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TGAGGCGTGAGGCAGGTACAC	0.607000													14	7					0	0	0	0
GNL3	26354	broad.mit.edu	37	3	52720819	52720819	+	Silent	SNP	T	C	C			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr3:52720819T>C	uc003dfd.2	+	2	221	c.48T>C	c.(46-48)CAT>CAC	p.H16H	PBRM1_uc003dey.2_5'Flank|GNL3_uc011beh.1_RNA|GNL3_uc003dfe.2_Silent_p.H4H|GNL3_uc003dff.2_Silent_p.H4H|SNORD19_uc003dfg.1_5'Flank	NM_014366	NP_055181	Q9BVP2	GNL3_HUMAN	guanine nucleotide binding protein-like 3	16	Basic (By similarity).				regulation of cell proliferation	nucleolus	GTP binding|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;6.75e-05)|Kidney(197;0.000611)|KIRC - Kidney renal clear cell carcinoma(197;0.000773)|OV - Ovarian serous cystadenocarcinoma(275;0.048)		TGACCTGCCATAAGCGGTATA	0.398000													18	7					0	0	0	0
ITIH1	3697	broad.mit.edu	37	3	52825552	52825552	+	Silent	SNP	C	T	T	rs143276781	byFrequency	TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr3:52825552C>T	uc003dfs.2	+	21	2538	c.2514C>T	c.(2512-2514)ATC>ATT	p.I838I	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Silent_p.I439I|ITIH1_uc010hmo.1_Silent_p.I392I|ITIH1_uc003dfu.2_Silent_p.I204I	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	838	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		TCCACCCCATCGGTTTTGAAG	0.597000													21	4					0	0	0	0
DCP1A	55802	broad.mit.edu	37	3	53376252	53376252	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr3:53376252T>C	uc003dgs.3	-	3	316	c.223A>G	c.(223-225)ATG>GTG	p.M75V	DCP1A_uc003dgt.3_RNA	NM_018403	NP_060873	Q9NPI6	DCP1A_HUMAN	DCP1 decapping enzyme homolog A	75					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasmic mRNA processing body|cytosol|nucleus	hydrolase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000164)|KIRC - Kidney renal clear cell carcinoma(197;0.00525)|Kidney(197;0.00579)|OV - Ovarian serous cystadenocarcinoma(275;0.0647)		AGATTGTGCATATTTAGTCGA	0.318000													7	1					0	0	0	0
PHLDB2	90102	broad.mit.edu	37	3	111637948	111637948	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr3:111637948A>T	uc010hqa.2	+	4	2160	c.1749A>T	c.(1747-1749)AGA>AGT	p.R583S	PHLDB2_uc003dyc.2_Missense_Mutation_p.R610S|PHLDB2_uc003dyd.2_Missense_Mutation_p.R583S|PHLDB2_uc003dyg.2_Missense_Mutation_p.R583S|PHLDB2_uc003dyh.2_Missense_Mutation_p.R583S|PHLDB2_uc003dyi.2_Missense_Mutation_p.R169S	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	583						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						AAGAACAGAGATCTCAGGAGT	0.403000													53	157					0	0	0	0
KALRN	8997	broad.mit.edu	37	3	124053163	124053163	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr3:124053163C>T	uc003ehg.2	+	9	1589	c.1462C>T	c.(1462-1464)CCT>TCT	p.P488S	KALRN_uc010hrv.1_Missense_Mutation_p.P488S|KALRN_uc003ehf.1_Missense_Mutation_p.P488S|KALRN_uc011bjy.1_Missense_Mutation_p.P488S	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	488					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GCCCCTGAGCCCTGGGAACTC	0.567000													35	100					0	0	0	0
CLDN1	9076	broad.mit.edu	37	3	190026161	190026161	+	Silent	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr3:190026161G>A	uc003fsh.2	-	4	761	c.541C>T	c.(541-543)CTA>TTA	p.L181L		NM_021101	NP_066924	O95832	CLD1_HUMAN	claudin 1	181	Helical; (Potential).				calcium-independent cell-cell adhesion|interspecies interaction between organisms	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity			lung(1)	1	all_cancers(143;2.95e-10)|Ovarian(172;0.0512)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.015)		CAGCAAAGTAGGGCACCTCCC	0.512000													22	119					0	0	0	0
ATP13A5	344905	broad.mit.edu	37	3	193068904	193068904	+	Silent	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr3:193068904G>A	uc011bsq.1	-	7	693	c.693C>T	c.(691-693)ATC>ATT	p.I231I		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	231	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		CAGTCAAAATGATGATGGCCA	0.393000													30	58					0	0	0	0
SENP5	205564	broad.mit.edu	37	3	196657755	196657755	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr3:196657755G>C	uc003fwz.3	+	10	2478	c.2229G>C	c.(2227-2229)AGG>AGC	p.R743S	SENP5_uc011bty.1_Missense_Mutation_p.R697S	NM_152699	NP_689912	Q96HI0	SENP5_HUMAN	SUMO1/sentrin specific peptidase 5	743					cell cycle|cell division|proteolysis	nucleolus	cysteine-type peptidase activity			breast(2)|lung(1)	3	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;3.14e-24)|all cancers(36;2.1e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.03e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.004)		TGCGGAAGAGGATTTACAAGG	0.488000													22	61					0	0	0	0
CEP135	9662	broad.mit.edu	37	4	56841014	56841014	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr4:56841014A>G	uc003hbi.2	+	11	1586	c.1352A>G	c.(1351-1353)GAA>GGA	p.E451G	CEP135_uc003hbj.2_Missense_Mutation_p.E157G	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	451	Potential.				centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					AAAGGTATAGAAGAAGAACGA	0.388000													30	44					0	0	0	0
GRIA2	2891	broad.mit.edu	37	4	158254056	158254056	+	Missense_Mutation	SNP	G	A	A	rs142538282	byFrequency	TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr4:158254056G>A	uc003ipm.3	+	7	1427	c.968G>A	c.(967-969)CGA>CAA	p.R323Q	GRIA2_uc011cit.1_Missense_Mutation_p.R276Q|GRIA2_uc003ipl.3_Missense_Mutation_p.R323Q|GRIA2_uc003ipk.3_Missense_Mutation_p.R276Q|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	323	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	GAAATCTCCCGAAGGGGGAAT	0.478000													39	57					0	0	0	0
PTCD2	79810	broad.mit.edu	37	5	71654182	71654182	+	Silent	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr5:71654182G>A	uc003kcb.2	+	10	1105	c.1095G>A	c.(1093-1095)ACG>ACA	p.T365T	PTCD2_uc011csf.1_Silent_p.T175T|PTCD2_uc003kcc.2_Silent_p.T213T|PTCD2_uc011csg.1_Silent_p.T193T|PTCD2_uc011csh.1_Silent_p.T256T|PTCD2_uc003kcd.2_RNA	NM_024754	NP_079030	Q8WV60	PTCD2_HUMAN	pentatricopeptide repeat domain 2	365											0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.73e-53)		AATCTCACACGTTGCTATTAA	0.532000													31	23					0	0	0	0
MARCH3	115123	broad.mit.edu	37	5	126206381	126206381	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr5:126206381G>C	uc003kuf.2	-	5	1161	c.706C>G	c.(706-708)CCG>GCG	p.P236A		NM_178450	NP_848545	Q86UD3	MARH3_HUMAN	membrane-associated ring finger (C3HC4) 3	236					endocytosis	cytoplasmic vesicle membrane|early endosome membrane|integral to membrane|lysosome	ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		Prostate(80;0.0928)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.074)|OV - Ovarian serous cystadenocarcinoma(64;0.0793)		AGCAAGGACGGCTGGTTAGAA	0.463000													35	79					0	0	0	0
KLHL3	26249	broad.mit.edu	37	5	136974777	136974777	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr5:136974777G>A	uc010jek.2	-	10	1528	c.1084C>T	c.(1084-1086)CGG>TGG	p.R362W	KLHL3_uc011cyc.1_Missense_Mutation_p.R131W|KLHL3_uc003lbr.3_Missense_Mutation_p.R280W|KLHL3_uc011cyd.1_Intron|KLHL3_uc010jel.1_Missense_Mutation_p.R131W|KLHL3_uc010jem.1_Missense_Mutation_p.R322W	NM_017415	NP_059111	Q9UH77	KLHL3_HUMAN	kelch-like 3	362	Kelch 2.					cytoplasm|cytoskeleton	actin binding|structural molecule activity				0		all_hematologic(541;3.67e-07)|Breast(839;7.61e-05)|Prostate(281;0.000825)|Ovarian(839;0.0481)|all_lung(232;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	GBM - Glioblastoma multiforme(465;0.0223)		TCCACTGTCCGCACCCGCAGT	0.592000													3	31					0	0	0	0
MFAP3	4238	broad.mit.edu	37	5	153429537	153429537	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr5:153429537G>A	uc003lvf.2	+	2	771	c.255G>A	c.(253-255)TGG>TGA	p.W85*	MFAP3_uc010jib.2_Nonsense_Mutation_p.W85*|MFAP3_uc011ddb.1_Intron	NM_001135037	NP_001128509	P55082	MFAP3_HUMAN	microfibrillar-associated protein 3 isoform 2	85	Ig-like C2-type.|Extracellular (Potential).					integral to membrane|plasma membrane					0	Renal(175;0.00488)	Lung NSC(249;0.00145)|all_lung(500;0.00226)|all_neural(177;0.122)|Breast(839;0.14)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)	OV - Ovarian serous cystadenocarcinoma(192;9.69e-06)|GBM - Glioblastoma multiforme(465;0.0201)		ATGTCCATTGGCACAATTCAA	0.418000													18	32					0	0	0	0
BTN3A3	10384	broad.mit.edu	37	6	26448955	26448955	+	Splice_Site	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr6:26448955G>A	uc003nhz.2	+	8	1118	c.938_splice	c.e8-1	p.K313_splice	BTN3A3_uc003nia.2_Splice_Site_p.K271_splice|BTN3A3_uc011dkn.1_Splice_Site_p.E264_splice	NM_006994	NP_008925	O00478	BT3A3_HUMAN	butyrophilin, subfamily 3, member A3 isoform a							integral to membrane					0						TTCCATTGCAGAGTGGAGGAA	0.448000													47	72					0	0	0	0
OR12D2	26529	broad.mit.edu	37	6	29365090	29365090	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr6:29365090C>G	uc003nmf.3	+	1	675	c.614C>G	c.(613-615)GCC>GGC	p.A205G		NM_013936	NP_039224	P58182	O12D2_HUMAN	olfactory receptor, family 12, subfamily D,	205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGGACAATTGCCATGGGCCCC	0.448000													59	87					0	0	0	0
C6orf154	221424	broad.mit.edu	37	6	43476039	43476039	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr6:43476039G>C	uc003ovk.1	-	3	1454	c.553C>G	c.(553-555)CTG>GTG	p.L185V	C6orf154_uc003ovj.1_Intron	NM_001012974	NP_001012992	Q5JTD7	CF154_HUMAN	hypothetical protein LOC221424	185	LRR 5.										0	all_cancers(18;3.79e-05)|Lung NSC(15;0.00217)|all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00736)|OV - Ovarian serous cystadenocarcinoma(102;0.0711)			GCCTCACCCAGGGGGTTGTAA	0.602000													11	25					0	0	0	0
GSTA2	2939	broad.mit.edu	37	6	52615381	52615381	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr6:52615381C>A	uc003pay.2	-	7	813	c.663G>T	c.(661-663)AGG>AGT	p.R221S		NM_000846	NP_000837	P09210	GSTA2_HUMAN	glutathione S-transferase alpha 2	221					glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Aminophenazone(DB01424)|Amsacrine(DB00276)|Busulfan(DB01008)|Chlorambucil(DB00291)|Chloroquine(DB00608)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Ethacrynic acid(DB00903)|Glutathione(DB00143)|Mechlorethamine(DB00888)|Praziquantel(DB01058)|Vitamin E(DB00163)	TTTATTAAAACCTGAAAATCT	0.413000													6	91					4.096e-09	4.41852e-09	1	0
IGF2R	3482	broad.mit.edu	37	6	160469544	160469544	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr6:160469544C>T	uc003qta.2	+	18	2631	c.2483C>T	c.(2482-2484)TCG>TTG	p.S828L		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	828	6.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		CGATATGCATCGGCTTGCCAG	0.483000													18	6					0	0	0	0
PDE1C	5137	broad.mit.edu	37	7	31890345	31890345	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr7:31890345G>A	uc003tcm.1	-	8	1230	c.761C>T	c.(760-762)ACG>ATG	p.T254M	PDE1C_uc003tcn.1_Missense_Mutation_p.T254M|PDE1C_uc003tco.1_Missense_Mutation_p.T314M|PDE1C_uc003tcr.2_Missense_Mutation_p.T254M|PDE1C_uc003tcs.2_Missense_Mutation_p.T254M	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	254	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CTCCAGCTCCGTCAGCCAGTT	0.463000													35	11					0	0	0	0
MUC17	140453	broad.mit.edu	37	7	100685655	100685655	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr7:100685655G>A	uc003uxp.1	+	3	11011	c.10958G>A	c.(10957-10959)GGC>GAC	p.G3653D	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3653	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|58.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TCTGAGGCTGGCACAGCTTCA	0.493000													4	177					0	0	0	0
SSPO	23145	broad.mit.edu	37	7	149473162	149473162	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr7:149473162C>T	uc010lpk.2	+	1	32	c.32C>T	c.(31-33)GCG>GTG	p.A11V	ZNF467_uc003wgc.2_5'Flank|ZNF467_uc003wgd.2_5'Flank|SSPO_uc010lpl.1_5'Flank	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	11					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TTTGGGATGGCGTGGGCCCTG	0.652000													9	8					0	0	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163215	163215	+	RNA	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr8:163215G>A	uc010lra.2	-	4		c.918C>T			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						AGATACACATGTATTTAGAGT	0.274000													6	53					0	0	0	0
LRRC67	286187	broad.mit.edu	37	8	67925256	67925256	+	Silent	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr8:67925256C>T	uc003xxc.2	-	4	517	c.372G>A	c.(370-372)GAG>GAA	p.E124E		NM_001013626	NP_001013648	Q7Z4L9	LRC67_HUMAN	leucine rich repeat containing 67	124	LRR 5.										0						GCCTCTGATTCTCAACATGAA	0.383000													32	75					0	0	0	0
LOC442421	442421	broad.mit.edu	37	9	66499794	66499794	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr9:66499794C>T	uc004aee.1	+	1	604	c.604C>T	c.(604-606)CGC>TGC	p.R202C	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						GTGCAAGTCGCGCAAGGAGCA	0.587000													10	61					0	0	0	0
BAT2L1	84726	broad.mit.edu	37	9	134340154	134340154	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr9:134340154C>T	uc004can.3	+	11	1464	c.1409C>T	c.(1408-1410)TCA>TTA	p.S470L	BAT2L1_uc010mzj.1_Missense_Mutation_p.S53L	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	470							protein binding				0						TGGCAGAAGTCATCAATGGGC	0.557000													3	16					0	0	0	0
TMEM164	84187	broad.mit.edu	37	X	109310602	109310602	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chrX:109310602C>T	uc004eom.2	+	3	737	c.418C>T	c.(418-420)CGG>TGG	p.R140W	TMEM164_uc004eol.2_5'UTR|TMEM164_uc010npq.2_Intron	NM_032227	NP_115603	Q5U3C3	TM164_HUMAN	transmembrane protein 164 isoform b	140						integral to membrane				large_intestine(1)|lung(1)|skin(1)	3						CCCTCCATGTCGGGGAGCTAT	0.403000													41	63					0	0	0	0
GRIA3	2892	broad.mit.edu	37	X	122532519	122532519	+	Silent	SNP	G	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chrX:122532519G>A	uc004etq.3	+	8	1238	c.945G>A	c.(943-945)CTG>CTA	p.L315L	GRIA3_uc004etr.3_Silent_p.L315L|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Silent_p.L299L	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	315	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	ACGCAATACTGGTCATAGCAG	0.453000													25	24					0	0	0	0
UPF2	26019	broad.mit.edu	37	10	11997456	11997456	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr10:11997456delT	uc001ila.2	-	13	3099	c.2625delA	c.(2623-2625)TTAfs	p.L875fs	UPF2_uc001ilb.2_Frame_Shift_Del_p.L875fs|UPF2_uc001ilc.2_Frame_Shift_Del_p.L875fs|UPF2_uc009xiz.1_Frame_Shift_Del_p.L875fs	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	875	Sufficient for interaction with UPF3A and UPF3B.|MIF4G 3.|Sufficient for interaction with EIF4A1 and EIF1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				AAAGTTCTCCTAAGAACTTGG	0.368													---	---	---							
Unknown	0	broad.mit.edu	37	14	74865395	74865396	+	IGR	DEL	CA	-	-			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr14:74865395_74865396delCA								C14orf115 (38685 upstream) : TMEM90A (7200 downstream)																							cacgtgcgtgcacacacacaca	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	15	56038833	56038833	+	IGR	DEL	G	-	-			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr15:56038833delG								PRTG (3656 upstream) : NEDD4 (80298 downstream)																							aaaaaaaaaagaaGCTCCTGG	0.279													---	---	---							
FLYWCH1	84256	broad.mit.edu	37	16	2980808	2980810	+	In_Frame_Del	DEL	GGA	-	-			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr16:2980808_2980810delGGA	uc002csd.2	+	4	1086_1088	c.723_725delGGA	c.(721-726)CTGGAG>CTG	p.E245del	FLYWCH1_uc002csb.2_In_Frame_Del_p.E244del|FLYWCH1_uc002csc.2_In_Frame_Del_p.E244del|FLYWCH1_uc010bsv.2_5'Flank	NM_032296	NP_115672	Q4VC44	FWCH1_HUMAN	FLYWCH-type zinc finger 1 isoform a	245	Poly-Glu.					nucleus	DNA binding|metal ion binding				0						AGCCGGCCCTGGAGGAGGAGGAG	0.704													---	---	---							
Unknown	0	broad.mit.edu	37	17	76488937	76488938	+	IGR	INS	-	T	T	rs35406046		TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr17:76488937_76488938insT								DNAH17 (20081 upstream) : CYTH1 (181193 downstream)																							GGCCTGGATGGttttttttttt	0.307													---	---	---							
ARRDC5	645432	broad.mit.edu	37	19	4903031	4903032	+	5'Flank	INS	-	TCACTGGTTCTTTT	TCACTGGTTCTTTT	rs144459964	by1000genomes	TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr19:4903031_4903032insTCACTGGTTCTTTT	uc002mbm.2	-							NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5						signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		ACCTGTAGTCCTCACTGGttct	0.302													---	---	---							
ZNF804A	91752	broad.mit.edu	37	2	185801739	185801740	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr2:185801739_185801740insA	uc002uph.2	+	4	2210_2211	c.1616_1617insA	c.(1615-1617)GGAfs	p.G539fs		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	539						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TGTGATTCTGGAAAAAATGAGA	0.347													---	---	---							
TPX2	22974	broad.mit.edu	37	20	30381707	30381707	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr20:30381707delT	uc002wwp.1	+	14	2264	c.1566delT	c.(1564-1566)CCTfs	p.P522fs	TPX2_uc010gdv.1_Frame_Shift_Del_p.P558fs	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	522					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			ATGGGGTGCCTTTTAAGCCCC	0.428													---	---	---							
ATXN1	6310	broad.mit.edu	37	6	16327913	16327915	+	In_Frame_Del	DEL	TGA	-	-	rs11969612	by1000genomes	TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr6:16327913_16327915delTGA	uc003nbt.2	-	8	1598_1600	c.627_629delTCA	c.(625-630)CATCAG>CAG	p.H209del	ATXN1_uc010jpi.2_In_Frame_Del_p.H209del|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	209	Poly-Gln.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				ctgctgatgctgatgctgctgct	0.379													---	---	---							
Unknown	0	broad.mit.edu	37	8	43527877	43527878	+	IGR	INS	-	T	T	rs146760022	by1000genomes	TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr8:43527877_43527878insT								POTEA (309549 upstream) : None (None downstream)																							tggaaacactctttTTTTTTTA	0.158													---	---	---							
Unknown	0	broad.mit.edu	37	9	44084401	44084402	+	IGR	INS	-	ATCTT	ATCTT			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chr9:44084401_44084402insATCTT								FAM75A6 (453671 upstream) : FAM27C (905834 downstream)																							TAAAGACTATATATAAAAATAA	0.277													---	---	---							
Unknown	0	broad.mit.edu	37	X	24447606	24447607	+	IGR	INS	-	T	T			TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chrX:24447606_24447607insT								FAM48B1 (64066 upstream) : PDK3 (35737 downstream)																							aattaaacctcttttttttTTT	0.163													---	---	---							
Unknown	0	broad.mit.edu	37	Y	10029348	10029352	+	IGR	DEL	TTGTG	-	-	rs79523635		TCGA-CR-6473-01A-11D-1870-08	TCGA-CR-6473-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f3396a0-a38d-4069-b65a-c4c4dd6187ad	e938fff8-12eb-4f2a-82c9-a0a98df3aabb	g.chrY:10029348_10029352delTTGTG								TTTY22 (378494 upstream) : None (None downstream)																							GATTAGGTACTTGTGTTGTGCAAGA	0.361													---	---	---							
