Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
WRAP73	49856	genome.wustl.edu	37	1	3551759	3551759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_017818.3	-1	reviewed	p.S235C	1.000	136	0%	95	30.5%	15	46.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00320,superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase,HMMPfam_WD40
ARID1A	8289	genome.wustl.edu	37	1	27097764	27097765	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_006015.4	+1	reviewed	p.A1119fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_ARID,superfamily_ARID-like
TRIM46	80128	genome.wustl.edu	37	1	155150601	155150601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_025058.3	+1	validated	p.R345C	1.000	35	0%	55	58.2%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
CFH	3075	genome.wustl.edu	37	1	196716320	196716320	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_000186.3	+1	reviewed	p.S1191	0.000	527	0.2%	1014	22.1%	164	31%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
PTPN14	5784	genome.wustl.edu	37	1	214549670	214549670	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_005401.4	-1	reviewed	p.N933	0.184	418	0%	591	24.7%	6	50%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
OBSCN	84033	genome.wustl.edu	37	1	228525712	228525712	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_001098623.1	+1	reviewed	p.L5623Q	1.000	75	0%	84	42.9%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RANBP2	5903	genome.wustl.edu	37	2	109388988	109388989	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_006267.4	+1	reviewed	p.Y2688fs	0.122:0.994	-	-	-	-	-	-	-	-	-	NULL
TFPI	7035	genome.wustl.edu	37	2	188368465	188368465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_006287.4	-1	reviewed	p.L11I	0.000	318	0%	422	38.9%	7	0%	benign(0.117)	deleterious(0.03)	neutral(0.374)	NULL
COL5A2	1290	genome.wustl.edu	37	2	189899879	189899879	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_000393.3	-1	reviewed	p.F1372	0.743	285	0%	316	38.6%	42	2.3%	-	-	-	HMMPfam_COLFI,HMMSmart_COLFI
TNS1	7145	genome.wustl.edu	37	2	218758179	218758179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_022648.4	-1	reviewed	p.V109I	0.998	74	0%	78	39.7%	15	6.6%	probably_damaging(0.986)	tolerated(0.07)	deleterious(0.754)	superfamily_SSF52799
CTNNB1	1499	genome.wustl.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	G	rs121913400	byCluster	TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_001098209.1	+1	reviewed	p.S33C	1.000	127	0%	120	33.3%	271	36.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SETD2	29072	genome.wustl.edu	37	3	47161949	47161949	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_014159.6	-1	reviewed	p.L1393V	0.992	333	0%	316	38.9%	10	10%	benign(0.167)	deleterious(0.01)	neutral(0.421)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591135	67591135	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_181523.1	+1	reviewed	p.R577fs	0.016	-	-	-	-	-	-	-	-	-	NULL
SNCAIP	9627	genome.wustl.edu	37	5	121759369	121759369	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_005460.2	+1	reviewed	p.S313R	0.999	200	0%	220	40%	0	-	possibly_damaging(0.878)	tolerated(0.05)	deleterious(0.688)	superfamily_ANK
PRSS16	10279	genome.wustl.edu	37	6	27216936	27216936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_005865.3	+1	reviewed	p.R132K	1.000	157	0%	140	17.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_S28,superfamily_SSF53474
DGKB	1607	genome.wustl.edu	37	7	14669861	14669861	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_004080.2	-1	reviewed	p.E390	1.000	146	0%	160	19.4%	0	-	-	-	-	NULL
GTF2IRD1	9569	genome.wustl.edu	37	7	73959113	73959113	+	Silent	SNP	C	C	G	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_016328.1	+1	reviewed	p.P549	0.010	75	0%	85	27.1%	28	46.4%	-	-	-	NULL
LMTK2	22853	genome.wustl.edu	37	7	97822972	97822972	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_014916.3	+1	reviewed	p.S1065	0.000	50	0%	53	24.5%	10	30%	-	-	-	NULL
ATG9B	285973	genome.wustl.edu	37	7	150721501	150721501	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_173681.5	-1	validated	p.R4*	0.586	12	0%	10	50%	0	-	-	-	-	NULL
TBC1D2	55357	genome.wustl.edu	37	9	100971188	100971188	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_018421.3	-1	validated	p.L638	1.000	76	0%	69	40.6%	33	33.3%	-	-	-	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
AKR1C4	1109	genome.wustl.edu	37	10	5242152	5242152	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_001818.2	+1	reviewed	p.R31S	0.004	199	0%	222	32.9%	0	-	benign(0.04)	tolerated(0.27)	neutral(0.036)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
PRTFDC1	56952	genome.wustl.edu	37	10	25160980	25160980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_020200.5	-1	provisional	p.M118V	1.000	144	0%	164	40.2%	7	57.1%	benign(0.003)	deleterious(0.03)	neutral(0.364)	HMMPfam_Pribosyltran,superfamily_PRTase-like
PTEN	5728	genome.wustl.edu	37	10	89717753	89717753	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	ENST00000371953	+1	known	p.K260*	1.000	228	0%	279	74.9%	24	54.1%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
SERPING1	710	genome.wustl.edu	37	11	57373520	57373520	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_000062.2	+1	reviewed	p.R241	0.142	221	0%	311	33.8%	372	31.4%	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SLC35F2	54733	genome.wustl.edu	37	11	107663446	107663446	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_017515.4	-1	validated	p.A340	0.026	103	0%	101	44.6%	4	25%	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	HMMPfam_DUF914,superfamily_Multidrug resistance efflux transporter EmrE
GIT2	9815	genome.wustl.edu	37	12	110399118	110399120	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_057169.3	-1	reviewed	p.L317in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
BRAP	8315	genome.wustl.edu	37	12	112121036	112121036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_006768.3	-1	reviewed	p.P53L	1.000	304	0%	314	33.8%	12	50%	benign(0.021)	tolerated(0.11)	neutral(0.273)	NULL
MAP3K9	4293	genome.wustl.edu	37	14	71199563	71199563	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_033141.2	-1	validated	p.S855	0.069	146	0%	211	32.2%	6	50%	-	-	-	NULL
UACA	55075	genome.wustl.edu	37	15	70960980	70960980	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_018003.2	-1	validated	p.H681	0.000	240	0%	268	43.3%	51	25.4%	-	-	-	NULL
ERCC4	2072	genome.wustl.edu	37	16	14014208	14014208	+	Silent	SNP	C	C	G	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_005236.2	+1	reviewed	p.L62	1.000	5	0.000	19	0.421	2	50%	-	-	-	NULL
ZNF469	84627	genome.wustl.edu	37	16	88496101	88496101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_001127464.1	+1	reviewed	p.S741R	1.000	5	0.000	4	1.000	1	0%	probably_damaging(0.962)	deleterious(0.02)	deleterious(0.788)	HMMSmart_ZnF_C2H2
SLC25A11	8402	genome.wustl.edu	37	17	4842178	4842178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_003562.4	-1	validated	p.G114V	1.000	64	0%	65	36.9%	70	37.1%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	superfamily_Mitochondrial carrier
SUZ12	23512	genome.wustl.edu	37	17	30267462	30267465	+	Frame_Shift_Del	DEL	CTTA	CTTA	-	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	CTTA	CTTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_015355.2	+1	reviewed	p.Y117fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MED13	9969	genome.wustl.edu	37	17	60059675	60059675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_005121.2	-1	reviewed	p.N1230S	1.000	158	0%	198	39.9%	15	40%	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
EPG5	57724	genome.wustl.edu	37	18	43484003	43484003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_020964.2	-1	validated	p.K1470R	0.943	160	0%	177	31.1%	10	10%	benign(0.07)	tolerated(0.29)	neutral(0.034)	NULL
ACAA2	10449	genome.wustl.edu	37	18	47329196	47329196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_006111.2	-1	reviewed	p.T15M	0.998	148	0%	152	32.9%	18	27.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Thiolase_N,superfamily_Thiolase-like
MUC16	94025	genome.wustl.edu	37	19	8993434	8993434	+	Silent	SNP	C	C	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_024690.2	-1	validated	p.L13885	0.080	267	0%	298	39.9%	19	57.8%	-	-	-	HMMPfam_SEA,superfamily_SEA domain
FPR3	2359	genome.wustl.edu	37	19	52327410	52327410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_002030.3	+1	validated	p.R137C	0.961	173	0%	188	33.5%	10	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LILRA4	23547	genome.wustl.edu	37	19	54849744	54849744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_012276.3	-1	reviewed	p.A93E	0.278	202	0%	220	40.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
NLRP7	199713	genome.wustl.edu	37	19	55453026	55453026	+	Silent	SNP	G	G	A	rs142035762	by1000genomes	TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_001127255.1	-1	reviewed	p.N18	0.001	105	0%	81	34.6%	0	-	-	-	-	HMMPfam_PAAD_DAPIN,superfamily_DEATH domain
C20orf43	51507	genome.wustl.edu	37	20	55092171	55092171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_016407.3	+1	validated	p.G219E	0.993	130	0%	123	37.4%	86	44.1%	benign(0.005)	tolerated(0.82)	neutral(0.001)	HMMPfam_DUF602
TFF2	7032	genome.wustl.edu	37	21	43770092	43770092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_005423.4	-1	reviewed	p.G43S	1.000	82	0%	65	36.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Trefoil,HMMSmart_PD,superfamily_P_trefoil,PatternScan_P_TREFOIL
RASD2	23551	genome.wustl.edu	37	22	35947831	35947831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_014310.3	+1	reviewed	p.V185M	1.000	59	1.7%	53	35.8%	1	100%	benign(0.422)	tolerated(0.06)	neutral(0.460)	HMMSmart_RAS,HMMPfam_Ras,superfamily_SSF52540
MSL3	10943	genome.wustl.edu	37	X	11777911	11777911	+	Splice_Site	SNP	G	G	C	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_078629.2	+1	reviewed	e2-1	1.000	510	0%	615	35.6%	9	22.2%	-	-	-	-
CXorf58	254158	genome.wustl.edu	37	X	23929944	23929944	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_152761.2	+1	validated	p.R63*	0.863	379	0%	318	34.6%	0	-	-	-	-	NULL
BCOR	54880	genome.wustl.edu	37	X	39921444	39921444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_001123385.1	-1	reviewed	p.N1459S	1.000	163	0%	166	37.3%	46	84.7%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	superfamily_Ankyrin repeat
CACNA1F	778	genome.wustl.edu	37	X	49082400	49082400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_005183.2	-1	reviewed	p.G552E	0.994	56	0%	55	30.9%	0	-	possibly_damaging(0.727)	tolerated(0.06)	deleterious(0.587)	superfamily_Voltage-gated potassium channels
BMP15	9210	genome.wustl.edu	37	X	50659598	50659598	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_005448.2	+1	reviewed	p.T390	0.986	110	0%	129	36.4%	0	-	-	-	-	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501
PHF8	23133	genome.wustl.edu	37	X	53970623	53970623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_015107.2	-1	reviewed	p.R865W	0.985	71	0%	59	35.6%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAF1	6872	genome.wustl.edu	37	X	70602842	70602842	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_004606.3	+1	reviewed	p.H612R	0.998	289	0%	261	36%	7	85.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CYLC1	1538	genome.wustl.edu	37	X	83128425	83128425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_021118.1	+1	provisional	p.I237V	0.000	93	0%	86	48.8%	0	-	unknown(0)	tolerated(0.71)	-	NULL
ZNF449	203523	genome.wustl.edu	37	X	134494128	134494128	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZN-01A-11D-A122-09	TCGA-D1-A0ZN-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52a441fb-5432-48c3-a7b0-612de8514591	50d8190c-2fa5-45e9-a40c-9872f65f13bc	NM_152695.5	+1	reviewed	p.I228	0.000	42	0%	38	28.9%	2	0%	-	-	-	NULL
