Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABLIM1	0	genome.wustl.edu	37	10	116233707	116233707	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	10	116233707	116233707	C	T	SNP	ABLIM1	ENST00000392955	human	ensembl	58_37c	-1	known	missense	c.776	p.G259E	1.000	NULL	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ADAMTSL3	0	genome.wustl.edu	37	15	84651456	84651456	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	15	84651456	84651456	T	C	SNP	ADAMTSL3	NM_207517.2	human	genbank	58_37c	+1	validated	silent	c.3076	p.L1026	0.209	NULL	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ANGEL1	0	genome.wustl.edu	37	14	77274333	77274333	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	14	77274333	77274333	G	C	SNP	ANGEL1	NM_015305.3	human	genbank	58_37c	-1	validated	missense	c.808	p.P270A	0.359	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos	-	no_errors
ARFGEF1	0	genome.wustl.edu	37	8	68123739	68123739	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	8	68123739	68123739	T	C	SNP	ARFGEF1	NM_006421.3	human	genbank	58_37c	-1	reviewed	missense	c.4798	p.S1600G	0.765	NULL	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMPfam_DUF1981,superfamily_ARM-type_fold	-	no_errors
ARHGAP15	0	genome.wustl.edu	37	2	144314050	144314050	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	144314050	144314050	C	A	SNP	ARHGAP15	NM_018460.3	human	genbank	58_37c	+1	validated	missense	c.999	p.N333K	1.000	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP	HMMPfam_RhoGAP,HMMSmart_RhoGAP,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,superfamily_SSF50729	-	no_errors
ARHGAP24	0	genome.wustl.edu	37	4	86844830	86844830	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	4	86844830	86844830	C	T	SNP	ARHGAP24	NM_001025616.2	human	genbank	58_37c	+1	validated	missense	c.298	p.H100Y	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like	-	no_errors
ARHGEF35	0	genome.wustl.edu	37	7	143884086	143884086	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	143884086	143884086	G	T	SNP	ARHGEF35	NM_001003702.2	human	genbank	58_37c	-1	validated	missense	c.1391	p.S464Y	0.010	NULL	NULL	-	no_errors
BCL11B	0	genome.wustl.edu	37	14	99640525	99640525	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	14	99640525	99640525	G	T	SNP	BCL11B	NM_138576.2	human	genbank	58_37c	-1	reviewed	missense	c.2648	p.T883N	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
BIRC6	0	genome.wustl.edu	37	2	32743984	32743984	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	32743984	32743984	C	T	SNP	BIRC6	NM_016252.3	human	genbank	58_37c	+1	reviewed	missense	c.11594	p.T3865I	0.998	NULL	HMMPfam_UQ_con,HMMSmart_SM00212,HMMPfam_BIR,HMMSmart_SM00238,superfamily_Galactose-binding domain-like,superfamily_UBC-like,superfamily_Inhibitor of apoptosis (IAP) repeat	-	no_errors
C11orf88	0	genome.wustl.edu	37	11	111385611	111385611	+	Silent	SNP	C	C	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	11	111385611	111385611	C	G	SNP	C11orf88	NM_207430.2	human	genbank	58_37c	+1	validated	silent	c.102	p.A34	0.000	NULL	NULL	-	no_errors
C1orf125	0	genome.wustl.edu	37	1	179335674	179335674	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	179335674	179335674	G	T	SNP	C1orf125	NM_144696.4	human	genbank	58_37c	+1	validated	silent	c.30	p.P10	0.000	NULL	HMMPfam_Ax_dynein_light	-	no_errors
C1orf173	0	genome.wustl.edu	37	1	75037347	75037347	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	75037347	75037347	C	A	SNP	C1orf173	NM_001002912.4	human	genbank	58_37c	-1	validated	silent	c.4047	p.T1349	0.000	NULL	NULL	-	no_errors
C7orf58	0	genome.wustl.edu	37	7	120740066	120740066	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	120740066	120740066	C	T	SNP	C7orf58	NM_024913.4	human	genbank	58_37c	+1	validated	missense	c.836	p.T279M	1.000	NULL	NULL	-	no_errors
C7orf58	0	genome.wustl.edu	37	7	120935519	120935519	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	120935519	120935519	A	T	SNP	C7orf58	NM_024913.4	human	genbank	58_37c	+1	validated	missense	c.2894	p.E965V	0.620	NULL	NULL	-	no_errors
C9orf5	0	genome.wustl.edu	37	9	111812873	111812873	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	9	111812873	111812873	G	T	SNP	C9orf5	NM_032012.3	human	genbank	58_37c	-1	validated	missense	c.1954	p.L652I	1.000	NULL	NULL	-	no_errors
CCDC50	0	genome.wustl.edu	37	3	191093233	191093233	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	3	191093233	191093233	C	T	SNP	CCDC50	NM_178335.2	human	genbank	58_37c	+1	reviewed	silent	c.831	p.P277	0.890	NULL	NULL	-	no_errors
CCRL2	0	genome.wustl.edu	37	3	46450435	46450435	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	3	46450435	46450435	G	A	SNP	CCRL2	NM_001130910.1	human	genbank	58_37c	+1	reviewed	missense	c.901	p.A301T	0.912	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,superfamily_SSF81321	-	no_errors
CDC20	0	genome.wustl.edu	37	1	43828729	43828729	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	43828729	43828729	C	G	SNP	CDC20	NM_001255.2	human	genbank	58_37c	+1	reviewed	missense	c.1429	p.P477A	1.000	NULL	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
CDH7	0	genome.wustl.edu	37	18	63476962	63476962	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	18	63476962	63476962	G	C	SNP	CDH7	NM_004361.2	human	genbank	58_37c	+1	reviewed	missense	c.233	p.G78A	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
CDHR1	0	genome.wustl.edu	37	10	85970822	85970822	+	Silent	SNP	C	C	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	10	85970822	85970822	C	G	SNP	CDHR1	NM_033100.2	human	genbank	58_37c	+1	reviewed	silent	c.1386	p.L462	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
CDS1	0	genome.wustl.edu	37	4	85538784	85538784	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	4	85538784	85538784	A	T	SNP	CDS1	NM_001263.3	human	genbank	58_37c	+1	reviewed	missense	c.410	p.Y137F	1.000	HMMPfam_CTP_transf_1	HMMPfam_CTP_transf_1,PatternScan_CDS	-	no_errors
CENPE	0	genome.wustl.edu	37	4	104061038	104061038	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	4	104061038	104061038	C	G	SNP	CENPE	NM_001813.2	human	genbank	58_37c	-1	validated	missense	c.6112	p.A2038P	0.555	NULL	PatternScan_AA_TRNA_LIGASE_I,HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CFH	0	genome.wustl.edu	37	1	196643014	196643014	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	196643014	196643014	C	A	SNP	CFH	NM_000186.3	human	genbank	58_37c	+1	reviewed	missense	c.272	p.T91N	0.123	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	-	no_errors
CHD2	0	genome.wustl.edu	37	15	93540500	93540500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	15	93540500	93540500	G	A	SNP	CHD2	NM_001271.3	human	genbank	58_37c	+1	reviewed	missense	c.3752	p.R1251H	0.999	superfamily_Homeodomain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_Homeodomain-like,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CPVL	0	genome.wustl.edu	37	7	29135737	29135737	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	29135737	29135737	C	A	SNP	CPVL	NM_019029.2	human	genbank	58_37c	-1	reviewed	missense	c.385	p.V129F	1.000	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases	HMMPfam_Peptidase_S10,PatternScan_CARBOXYPEPT_SER_SER,superfamily_alpha/beta-Hydrolases	-	no_errors
CR1	0	genome.wustl.edu	37	1	207697077	207697077	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	207697077	207697077	G	A	SNP	CR1	ENST00000434033	human	ensembl	58_37c	+1	known	missense	c.536	p.R179K	0.000	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CSMD1	0	genome.wustl.edu	37	8	3224613	3224613	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	8	3224613	3224613	T	C	SNP	CSMD1	NM_033225.5	human	genbank	58_37c	-1	validated	missense	c.3059	p.Q1020R	1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
DNAH10	0	genome.wustl.edu	37	12	124402297	124402301	+	Frame_Shift_Del	DEL	GAACA	GAACA	-	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	GAACA	GAACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	12	124402297	124402301	GAACA	-	DEL	DNAH10	NM_207437.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.10815_10819	p.N3606fs	0.493:1.000:1.000:1.000:1.000	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAH3	0	genome.wustl.edu	37	16	20970646	20970646	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	16	20970646	20970646	T	C	SNP	DNAH3	NM_017539.1	human	genbank	58_37c	-1	provisional	missense	c.10681	p.I3561V	0.994	HMMPfam_Dynein_heavy	HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAH5	0	genome.wustl.edu	37	5	13735385	13735385	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	5	13735385	13735385	G	A	SNP	DNAH5	NM_001369.2	human	genbank	58_37c	-1	reviewed	silent	c.11616	p.I3872	0.001	NULL	HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540	-	no_errors
DNAH7	0	genome.wustl.edu	37	2	196723282	196723282	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	196723282	196723282	G	A	SNP	DNAH7	NM_018897.2	human	genbank	58_37c	-1	validated	silent	c.7983	p.I2661	0.998	NULL	PatternScan_ADH_SHORT,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,PatternScan_EF_HAND_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DYRK4	0	genome.wustl.edu	37	12	4721739	4721739	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	12	4721739	4721739	C	A	SNP	DYRK4	NM_003845.1	human	genbank	58_37c	+1	provisional	missense	c.1176	p.D392E	0.812	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
EIF2AK4	0	genome.wustl.edu	37	15	40308734	40308734	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	15	40308734	40308734	A	C	SNP	EIF2AK4	NM_001013703.2	human	genbank	58_37c	+1	validated	missense	c.3791	p.K1264T	1.000	superfamily_Class II aaRS and biotin synthetases	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_tRNA-synt_2b,HMMPfam_RWD,HMMSmart_SM00591,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),superfamily_UBC-like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_DNA_POLYMERASE_B,superfamily_Class II aaRS and biotin synthetases	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	12395	12395	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	MT	12395	12395	T	C	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.59	p.L20P	NULL	NULL	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000198888	0	genome.wustl.edu	37	MT	3916	3916	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	MT	3916	3916	G	A	SNP	ENSG00000198888	ENST00000361390	human	ensembl	58_37c	+1	known	missense	c.610	p.E204K	NULL	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_2	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_stop_codon:mismatch_between_exon_seq_and_reference
ENSG00000207844	0	genome.wustl.edu	37	17	26603520	26603520	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	26603520	26603520	G	A	SNP	ENSG00000207844	ENST00000385109	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.425	-	-	-	no_errors
ENSG00000248251	0	genome.wustl.edu	37	16	90235791	90235791	+	RNA	SNP	C	T	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	16	90235791	90235791	C	T	SNP	ENSG00000248251	ENST00000434625	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors
FAM25A	0	genome.wustl.edu	37	10	88784395	88784395	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	10	88784395	88784395	C	T	SNP	FAM25A	ENST00000343959	human	ensembl	58_37c	+1	known	missense	c.253	p.P85S	0.846	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
FBXO10	0	genome.wustl.edu	37	9	37521593	37521593	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	9	37521593	37521593	C	G	SNP	FBXO10	NM_012166.2	human	genbank	58_37c	-1	validated	missense	c.2173	p.E725Q	1.000	HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like	HMMPfam_F-box,HMMSmart_FBOX,HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like,superfamily_SSF81383	-	no_errors
FHAD1	0	genome.wustl.edu	37	1	15687065	15687065	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	15687065	15687065	A	C	SNP	FHAD1	NM_052929.1	human	genbank	58_37c	+1	provisional	missense	c.2762	p.E921A	0.081	NULL	HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain	-	no_errors
FLG	0	genome.wustl.edu	37	1	152279767	152279767	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	152279767	152279767	G	A	SNP	FLG	NM_002016.1	human	genbank	58_37c	-1	reviewed	missense	c.7595	p.S2532L	0.001	HMMPfam_Filaggrin	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
FUT4	0	genome.wustl.edu	37	11	94278568	94278568	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	11	94278568	94278568	C	A	SNP	FUT4	NM_002033.3	human	genbank	58_37c	+1	reviewed	silent	c.1269	p.T423	0.004	HMMPfam_Glyco_transf_10	HMMPfam_Glyco_transf_10	-	no_errors
GCNT2	0	genome.wustl.edu	37	6	10557574	10557574	+	Silent	SNP	A	A	T	rs55954229	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	6	10557574	10557574	A	T	SNP	GCNT2	NM_001491.2	human	genbank	58_37c	+1	reviewed	silent	c.918	p.P306	1.000	HMMPfam_Branch	HMMPfam_Branch	-	no_errors
GPR174	0	genome.wustl.edu	37	X	78427212	78427212	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	X	78427212	78427212	A	G	SNP	GPR174	NM_032553.1	human	genbank	58_37c	+1	validated	silent	c.708	p.A236	0.004	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
GRM8	0	genome.wustl.edu	37	7	126079180	126079180	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	126079180	126079180	G	C	SNP	GRM8	NM_000845.2	human	genbank	58_37c	-1	reviewed	nonsense	c.2720	p.S907*	1.000	NULL	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_Periplasmic binding protein-like I	-	no_errors
HECW2	0	genome.wustl.edu	37	2	197081766	197081766	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	197081766	197081766	C	A	SNP	HECW2	NM_020760.1	human	genbank	58_37c	-1	provisional	missense	c.4460	p.R1487I	1.000	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
HLA-C	0	genome.wustl.edu	37	6	31239446	31239446	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	6	31239446	31239446	G	A	SNP	HLA-C	ENST00000415537	human	ensembl	58_37c	-1	known	nonsense	c.271	p.Q91*	0.025	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
HOXA13	0	genome.wustl.edu	37	7	27238809	27238809	+	Silent	SNP	C	C	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	27238809	27238809	C	G	SNP	HOXA13	NM_000522.4	human	genbank	58_37c	-1	reviewed	silent	c.888	p.A296	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
HSP90B3P	0	genome.wustl.edu	37	1	92108588	92108588	+	RNA	SNP	T	T	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	92108588	92108588	T	A	SNP	HSP90B3P	NR_003130.2	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.993	-	-	-	pseudogene
HYOU1	0	genome.wustl.edu	37	11	118926221	118926221	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	11	118926221	118926221	T	C	SNP	HYOU1	NM_001130991.1	human	genbank	58_37c	-1	reviewed	missense	c.248	p.D83G	1.000	HMMPfam_HSP70,superfamily_Actin-like ATPase domain	HMMPfam_HSP70,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain,superfamily_Actin-like ATPase domain	-	no_errors
IDS	0	genome.wustl.edu	37	X	148568556	148568556	+	Silent	SNP	T	T	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	X	148568556	148568556	T	G	SNP	IDS	NM_000202.5	human	genbank	58_37c	-1	reviewed	silent	c.1080	p.I360	1.000	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like	HMMPfam_Sulfatase,PatternScan_SULFATASE_2,PatternScan_SULFATASE_1,superfamily_Alkaline phosphatase-like	-	no_errors
IL6ST	0	genome.wustl.edu	37	5	55237584	55237584	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	5	55237584	55237584	C	A	SNP	IL6ST	NM_002184.2	human	genbank	58_37c	-1	reviewed	nonsense	c.2083	p.E695*	1.000	NULL	PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_Lep_receptor_Ig	-	no_errors
KCND2	0	genome.wustl.edu	37	7	119915360	119915360	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	119915360	119915360	A	G	SNP	KCND2	NM_012281.2	human	genbank	58_37c	+1	reviewed	missense	c.674	p.Y225C	1.000	superfamily_Voltage-gated potassium channels	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels	-	no_errors
KDM3A	0	genome.wustl.edu	37	2	86718115	86718115	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	86718115	86718115	C	G	SNP	KDM3A	NM_018433.5	human	genbank	58_37c	+1	reviewed	missense	c.3685	p.Q1229E	1.000	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like	-	no_errors
KIAA0494	0	genome.wustl.edu	37	1	47154023	47154023	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	47154023	47154023	A	C	SNP	KIAA0494	NM_014774.2	human	genbank	58_37c	-1	validated	splice_site	c.987+2	e7+2	1.000	-	-	-	no_errors
KIAA1409	0	genome.wustl.edu	37	14	94088952	94088952	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	14	94088952	94088952	C	A	SNP	KIAA1409	NM_020818.3	human	genbank	58_37c	+1	validated	silent	c.4842	p.P1614	0.102	NULL	NULL	-	no_errors
KIF27	0	genome.wustl.edu	37	9	86514613	86514613	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	9	86514613	86514613	A	G	SNP	KIF27	NM_017576.1	human	genbank	58_37c	-1	provisional	missense	c.1565	p.V522A	0.101	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KILLIN	0	genome.wustl.edu	37	10	89621990	89621998	+	In_Frame_Del	DEL	GCCTCCGGA	GCCTCCGGA	-	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	GCCTCCGGA	GCCTCCGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	10	89621990	89621998	GCCTCCGGA	-	DEL	KILLIN	NM_001126049.1	human	genbank	58_37c	-1	validated	in_frame_del	c.255_247	p.SGG83in_frame_del	0.023:0.038:0.017:0.003:0.008:0.000:0.000:0.001:0.084	NULL	NULL	-	no_errors
KNTC1	0	genome.wustl.edu	37	12	123107016	123107016	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	12	123107016	123107016	G	C	SNP	KNTC1	NM_014708.4	human	genbank	58_37c	+1	reviewed	missense	c.6377	p.S2126T	0.908	HMMPfam_Rod_C	PatternScan_BZIP_BASIC,HMMPfam_Rod_C	-	no_errors
KRT20	0	genome.wustl.edu	37	17	39034526	39034526	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	39034526	39034526	G	T	SNP	KRT20	NM_019010.1	human	genbank	58_37c	-1	reviewed	missense	c.1010	p.A337D	0.029	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
LMOD1	0	genome.wustl.edu	37	1	201868906	201868906	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	201868906	201868906	A	G	SNP	LMOD1	NM_012134.2	human	genbank	58_37c	-1	reviewed	missense	c.1235	p.L412P	0.980	HMMPfam_Tropomodulin,superfamily_SSF52047	HMMSmart_WH2,HMMPfam_Tropomodulin,superfamily_SSF52047	-	no_errors
LOC100289668	0	genome.wustl.edu	37	15	102303324	102303324	+	Silent	SNP	G	G	A	rs149708411	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	15	102303324	102303324	G	A	SNP	LOC100289668	XM_002343401.1	human	genbank	58_37c	+1	model	silent	c.144	p.A48	0.983	NULL	NULL	-	no_start_codon:no_stop_codon
LOC400406	0	genome.wustl.edu	37	15	78279107	78279108	+	RNA	INS	-	-	ACCCAGG	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	15	78279107	78279108	-	ACCCAGG	INS	LOC400406	XR_042358.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.001:0.000	-	-	-	pseudogene
LOC440180	0	genome.wustl.edu	37	14	57508676	57508676	+	RNA	SNP	G	G	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	14	57508676	57508676	G	C	SNP	LOC440180	XR_017569.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.014	-	-	-	pseudogene
LOC646359	0	genome.wustl.edu	37	18	14377596	14377596	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	18	14377596	14377596	T	A	SNP	LOC646359	XM_929288.3	human	genbank	58_37c	-1	model	missense	c.1167	p.R389S	1.000	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_TRF,superfamily_Telomeric repeat binding factor (TRF) dimerisation domain,HMMPfam_Myb_DNA-binding	-	no_errors
LPP	0	genome.wustl.edu	37	3	188584023	188584023	+	Silent	SNP	C	C	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	3	188584023	188584023	C	G	SNP	LPP	NM_005578.3	human	genbank	58_37c	+1	reviewed	silent	c.1446	p.P482	1.000	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
LRRC37A4	0	genome.wustl.edu	37	17	43591861	43591861	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	43591861	43591861	G	A	SNP	LRRC37A4	ENST00000443126	human	ensembl	58_37c	-1	known	missense	c.122	p.P41L	0.012	NULL	NULL	-	no_errors
LRRC7	0	genome.wustl.edu	37	1	70225882	70225882	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	70225882	70225882	C	T	SNP	LRRC7	ENST00000310961	human	ensembl	58_37c	+1	known	silent	c.10	p.L4	1.000	superfamily_L domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like	-	no_errors
MAP2	0	genome.wustl.edu	37	2	210565003	210565003	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	210565003	210565003	G	A	SNP	MAP2	NM_002374.3	human	genbank	58_37c	+1	reviewed	missense	c.4525	p.A1509T	1.000	NULL	HMMPfam_Tubulin-binding,PatternScan_TAU_MAP,HMMPfam_MAP2_projctn,HMMPfam_RII_binding_1	-	no_errors
MBD3L1	0	genome.wustl.edu	37	19	8953820	8953820	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	19	8953820	8953820	A	C	SNP	MBD3L1	NM_145208.2	human	genbank	58_37c	+1	reviewed	missense	c.466	p.K156Q	0.034	NULL	NULL	-	no_errors
MCF2L	0	genome.wustl.edu	37	13	113742701	113742701	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	13	113742701	113742701	C	G	SNP	MCF2L	NM_001112732.1	human	genbank	58_37c	+1	validated	missense	c.2920	p.Q974E	1.000	HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00516,PatternScan_DH_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,HMMPfam_SH3_2,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like	-	no_errors
MOV10	0	genome.wustl.edu	37	1	113232573	113232573	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	113232573	113232573	G	A	SNP	MOV10	NM_001130079.1	human	genbank	58_37c	+1	validated	missense	c.689	p.G230D	0.989	NULL	PatternScan_ER_TARGET,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYH8	0	genome.wustl.edu	37	17	10300124	10300124	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	10300124	10300124	T	C	SNP	MYH8	NM_002472.2	human	genbank	58_37c	-1	reviewed	missense	c.4358	p.D1453G	1.000	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
MYST4	0	genome.wustl.edu	37	10	76735881	76735881	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	10	76735881	76735881	C	G	SNP	MYST4	NM_012330.2	human	genbank	58_37c	+1	validated	missense	c.1786	p.R596G	1.000	NULL	"HMMSmart_SM00249,HMMPfam_MOZ_SAS,HMMSmart_SM00526,superfamily_FYVE/PHD zinc finger,superfamily_Acyl-CoA N-acyltransferases (Nat),PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
MYT1	0	genome.wustl.edu	37	20	62871224	62871224	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	20	62871224	62871224	C	A	SNP	MYT1	NM_004535.2	human	genbank	58_37c	+1	reviewed	missense	c.3205	p.Q1069K	1.000	NULL	HMMPfam_zf-C2HC,HMMPfam_MYT1,superfamily_SSF103637	-	no_errors
NBEA	0	genome.wustl.edu	37	13	35770032	35770032	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	13	35770032	35770032	A	T	SNP	NBEA	NM_015678.4	human	genbank	58_37c	+1	validated	missense	c.4959	p.K1653N	1.000	superfamily_ARM repeat	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
OR10G9	0	genome.wustl.edu	37	11	123894114	123894114	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	11	123894114	123894114	C	A	SNP	OR10G9	NM_001001953.1	human	genbank	58_37c	+1	provisional	missense	c.395	p.T132N	0.004	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR6T1	0	genome.wustl.edu	37	11	123813968	123813968	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	11	123813968	123813968	T	C	SNP	OR6T1	NM_001005187.1	human	genbank	58_37c	-1	provisional	missense	c.578	p.H193R	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PABPN1L	0	genome.wustl.edu	37	16	88932941	88932941	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	16	88932941	88932941	G	T	SNP	PABPN1L	NM_001080487.1	human	genbank	58_37c	-1	provisional	missense	c.74	p.P25H	0.733	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
PARP1	0	genome.wustl.edu	37	1	226579990	226579990	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	226579990	226579990	G	T	SNP	PARP1	NM_001618.3	human	genbank	58_37c	-1	reviewed	missense	c.312	p.S104R	1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMPfam_zf-PARP,PatternScan_PARP_ZN_FINGER_1,HMMPfam_PARP_reg,superfamily_Domain of poly(ADP-ribose) polymerase,HMMPfam_WGR,HMMSmart_SM00773,HMMPfam_PARP,HMMPfam_PADR1,superfamily_ADP-ribosylation,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
PAXIP1	0	genome.wustl.edu	37	7	154753359	154753359	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	154753359	154753359	C	G	SNP	PAXIP1	NM_007349.3	human	genbank	58_37c	-1	reviewed	splice_site	c.2128-1	e11-1	1.000	-	-	-	no_errors
PCDHB1	0	genome.wustl.edu	37	5	140431880	140431880	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	5	140431880	140431880	A	T	SNP	PCDHB1	NM_013340.2	human	genbank	58_37c	+1	reviewed	missense	c.825	p.K275N	0.219	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PLCL1	0	genome.wustl.edu	37	2	198949886	198949886	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	198949886	198949886	G	C	SNP	PLCL1	NM_006226.3	human	genbank	58_37c	+1	validated	missense	c.1351	p.D451H	0.004	superfamily_PLC-like_Pdiesterase_TIM-brl	HMMPfam_C2,HMMSmart_C2,HMMPfam_PI-PLC-X,HMMSmart_PLCXc,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,HMMPfam_PH,HMMSmart_PH,superfamily_C2_CaLB,HMMPfam_efhand_like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF47473,superfamily_SSF50729	-	no_errors
POLR3D	0	genome.wustl.edu	37	8	22106154	22106154	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	8	22106154	22106154	C	G	SNP	POLR3D	NM_001722.2	human	genbank	58_37c	+1	reviewed	missense	c.647	p.A216G	0.001	NULL	HMMPfam_RNA_pol_Rpc4	-	no_errors
PPY2	0	genome.wustl.edu	37	17	26574486	26574486	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	26574486	26574486	G	A	SNP	PPY2	ENST00000247030	human	ensembl	58_37c	+1	known	missense	c.17	p.R6H	0.226	NULL	NULL	-	no_errors
RAB19	0	genome.wustl.edu	37	7	140110775	140110775	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	140110775	140110775	C	A	SNP	RAB19	NM_001008749.2	human	genbank	58_37c	+1	validated	missense	c.204	p.N68K	0.017	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RAB37	0	genome.wustl.edu	37	17	72725505	72725505	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	72725505	72725505	G	A	SNP	RAB37	NM_175738.4	human	genbank	58_37c	+1	validated	silent	c.183	p.T61	0.972	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RAD51AP2	0	genome.wustl.edu	37	2	17696790	17696790	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	17696790	17696790	T	C	SNP	RAD51AP2	NM_001099218.2	human	genbank	58_37c	-1	provisional	missense	c.2893	p.K965E	1.000	NULL	NULL	-	no_errors
RHOBTB2	0	genome.wustl.edu	37	8	22862905	22862905	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	8	22862905	22862905	C	T	SNP	RHOBTB2	NM_015178.2	human	genbank	58_37c	+1	validated	silent	c.213	p.D71	0.989	HMMSmart_RHO,superfamily_SSF52540	HMMSmart_BTB,HMMSmart_RHO,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RIMBP2	0	genome.wustl.edu	37	12	130941040	130941040	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	12	130941040	130941040	C	G	SNP	RIMBP2	NM_015347.4	human	genbank	58_37c	-1	validated	splice_site	c.307+1	e2+1	1.000	-	-	-	no_errors
RNASE7	0	genome.wustl.edu	37	14	21511331	21511331	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	14	21511331	21511331	G	A	SNP	RNASE7	NM_032572.3	human	genbank	58_37c	+1	validated	silent	c.180	p.K60	0.000	HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like	HMMPfam_RnaseA,HMMSmart_SM00092,PatternScan_RNASE_PANCREATIC,superfamily_RNase A-like	-	no_errors
RPL8	0	genome.wustl.edu	37	8	146016828	146016829	+	Frame_Shift_Ins	INS	-	-	GG	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	8	146016828	146016829	-	GG	INS	RPL8	NM_000973.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.333_332	p.I112fs	0.997:1.000	HMMPfam_Ribosomal_L2_C,superfamily_Translation proteins SH3-like domain	HMMPfam_Ribosomal_L2,HMMPfam_Ribosomal_L2_C,PatternScan_RIBOSOMAL_L2,superfamily_Translation proteins SH3-like domain,superfamily_Nucleic acid-binding proteins	-	no_errors
SCN2A	0	genome.wustl.edu	37	2	166245597	166245597	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	166245597	166245597	A	T	SNP	SCN2A	NM_001040142.1	human	genbank	58_37c	+1	reviewed	missense	c.5281	p.I1761F	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SERPIND1	0	genome.wustl.edu	37	22	21134011	21134011	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	22	21134011	21134011	C	T	SNP	SERPIND1	NM_000185.3	human	genbank	58_37c	+1	reviewed	silent	c.411	p.L137	0.119	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins	HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN,superfamily_Serpins,PatternScan_TONB_DEPENDENT_REC_1	-	no_errors
SHB	0	genome.wustl.edu	37	9	37948743	37948743	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	9	37948743	37948743	T	G	SNP	SHB	NM_003028.2	human	genbank	58_37c	-1	validated	missense	c.1235	p.H412P	1.000	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	-	no_errors
SHISA6	0	genome.wustl.edu	37	17	11166794	11166794	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	11166794	11166794	G	T	SNP	SHISA6	NM_207386.3	human	genbank	58_37c	+1	validated	silent	c.750	p.S250	0.163	NULL	NULL	-	no_errors
SLC13A2	0	genome.wustl.edu	37	17	26818766	26818766	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	26818766	26818766	C	A	SNP	SLC13A2	NM_003984.3	human	genbank	58_37c	+1	validated	silent	c.774	p.G258	0.000	HMMPfam_Na_sulph_symp	HMMPfam_Na_sulph_symp,PatternScan_NA_SULFATE	-	no_errors
SLC17A8	0	genome.wustl.edu	37	12	100796149	100796149	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	12	100796149	100796149	G	A	SNP	SLC17A8	NM_139319.2	human	genbank	58_37c	+1	reviewed	nonsense	c.795	p.W265*	1.000	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLC2A12	0	genome.wustl.edu	37	6	134350198	134350198	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	6	134350198	134350198	G	A	SNP	SLC2A12	NM_145176.2	human	genbank	58_37c	-1	validated	silent	c.765	p.S255	0.983	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter	HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1,superfamily_MFS general substrate transporter	-	no_errors
SMOC2	0	genome.wustl.edu	37	6	169053662	169053662	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	6	169053662	169053662	C	G	SNP	SMOC2	NM_022138.2	human	genbank	58_37c	+1	reviewed	missense	c.1072	p.L358V	1.000	superfamily_SSF47473	HMMPfam_Thyroglobulin_1,HMMSmart_TY,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin_1,HMMSmart_EFh,HMMPfam_Kazal_1,HMMSmart_KAZAL,PatternScan_EF_HAND_1,HMMPfam_SPARC_Ca_bdg,superfamily_SSF47473	-	no_errors
SNX32	0	genome.wustl.edu	37	11	65620233	65620233	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	11	65620233	65620233	G	A	SNP	SNX32	NM_152760.2	human	genbank	58_37c	+1	validated	missense	c.1045	p.E349K	0.999	HMMPfam_Vps5	HMMPfam_PX,superfamily_PX domain,PatternScan_PHOSPHOPANTETHEINE,HMMPfam_Vps5	-	no_errors
SORBS2	0	genome.wustl.edu	37	4	186598448	186598476	+	Frame_Shift_Del	DEL	GGTAGAAATCCTCCGAGTTTGAGAATCTT	GGTAGAAATCCTCCGAGTTTGAGAATCTT	-	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	GGTAGAAATCCTCCGAGTTTGAGAATCTT	GGTAGAAATCCTCCGAGTTTGAGAATCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	4	186598448	186598476	GGTAGAAATCCTCCGAGTTTGAGAATCTT	-	DEL	SORBS2	NM_001145673.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.195_167	p.Q56fs	0.996:1.000:0.993:0.980:1.000:0.997:0.833:0.829:0.646:0.312:0.319:0.321:0.316:0.370:0.373:0.027:0.030:0.018:0.002:0.941:0.999:1.000:1.000:1.000:1.000:1.000:0.971:0.911:0.934	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Sorb,HMMSmart_SM00459	-	no_errors
SPTBN1	0	genome.wustl.edu	37	2	54870174	54870174	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	54870174	54870174	G	T	SNP	SPTBN1	NM_003128.2	human	genbank	58_37c	+1	reviewed	nonsense	c.3913	p.E1305*	1.000	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like	-	no_errors
STT3B	0	genome.wustl.edu	37	3	31665175	31665175	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	3	31665175	31665175	G	A	SNP	STT3B	NM_178862.1	human	genbank	58_37c	+1	provisional	missense	c.1549	p.V517M	1.000	HMMPfam_STT3	HMMPfam_STT3	-	no_errors
SVOPL	0	genome.wustl.edu	37	7	138363783	138363783	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	138363783	138363783	G	T	SNP	SVOPL	NM_001139456.1	human	genbank	58_37c	-1	validated	missense	c.8	p.T3N	0.053	superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
TAOK3	0	genome.wustl.edu	37	12	118615098	118615098	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	12	118615098	118615098	G	T	SNP	TAOK3	NM_016281.3	human	genbank	58_37c	-1	validated	missense	c.1603	p.Q535K	1.000	NULL	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
TGFB3	0	genome.wustl.edu	37	14	76446997	76446997	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	14	76446997	76446997	C	A	SNP	TGFB3	NM_003239.2	human	genbank	58_37c	-1	reviewed	silent	c.240	p.L80	1.000	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines	-	no_errors
TMPRSS15	0	genome.wustl.edu	37	21	19666941	19666941	+	Silent	SNP	G	G	T	rs140721787	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	21	19666941	19666941	G	T	SNP	TMPRSS15	NM_002772.2	human	genbank	58_37c	-1	reviewed	silent	c.2290	p.R764	0.701	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like	HMMPfam_SEA,HMMSmart_SM00200,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMPfam_SRCR,HMMPfam_Trypsin,HMMSmart_SM00020,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,superfamily_Trypsin-like serine proteases,HMMSmart_SM00202,superfamily_SRCR-like,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,superfamily_SEA domain	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	17	7578271	7578271	T	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.578	p.H193L	0.998	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TWF1	0	genome.wustl.edu	37	12	44191587	44191587	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	12	44191587	44191587	A	G	SNP	TWF1	NM_002822.3	human	genbank	58_37c	-1	reviewed	missense	c.635	p.V212A	1.000	superfamily_Actin depolymerizing proteins	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins	-	no_errors
UBR3	0	genome.wustl.edu	37	2	170751798	170751798	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	2	170751798	170751798	A	G	SNP	UBR3	NM_172070.3	human	genbank	58_37c	+1	validated	missense	c.1213	p.M405V	1.000	NULL	HMMPfam_zf-UBR,HMMSmart_SM00396,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
UBR4	0	genome.wustl.edu	37	1	19494604	19494604	+	Silent	SNP	A	A	C	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	19494604	19494604	A	C	SNP	UBR4	NM_020765.2	human	genbank	58_37c	-1	validated	silent	c.3816	p.T1272	0.849	NULL	HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors
URB2	0	genome.wustl.edu	37	1	229771028	229771028	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	229771028	229771028	G	A	SNP	URB2	NM_014777.2	human	genbank	58_37c	+1	provisional	missense	c.668	p.G223D	0.115	NULL	HMMPfam_Urb2	-	no_errors
VCAM1	0	genome.wustl.edu	37	1	101190442	101190442	+	Silent	SNP	T	T	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	101190442	101190442	T	A	SNP	VCAM1	NM_001078.2	human	genbank	58_37c	+1	reviewed	silent	c.924	p.V308	1.000	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
WNT2	0	genome.wustl.edu	37	7	116955248	116955248	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	7	116955248	116955248	A	G	SNP	WNT2	NM_003391.2	human	genbank	58_37c	-1	reviewed	silent	c.465	p.G155	0.995	HMMPfam_wnt,HMMSmart_SM00097	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors
WNT2B	0	genome.wustl.edu	37	1	113057692	113057692	+	Missense_Mutation	SNP	G	G	A	rs140255509	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	113057692	113057692	G	A	SNP	WNT2B	NM_024494.2	human	genbank	58_37c	+1	reviewed	missense	c.379	p.V127I	1.000	HMMPfam_wnt,HMMSmart_SM00097	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors
ZNF644	0	genome.wustl.edu	37	1	91383613	91383613	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	1	91383613	91383613	A	T	SNP	ZNF644	NM_201269.1	human	genbank	58_37c	-1	validated	missense	c.3787	p.C1263S	1.000	HMMSmart_SM00355	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF682	0	genome.wustl.edu	37	19	20117638	20117638	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	19	20117638	20117638	C	A	SNP	ZNF682	NM_033196.2	human	genbank	58_37c	-1	validated	nonsense	c.673	p.G225*	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF705G	0	genome.wustl.edu	37	8	7217781	7217781	+	Silent	SNP	T	T	A	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	8	7217781	7217781	T	A	SNP	ZNF705G	ENST00000400156	human	ensembl	58_37c	-1	known	silent	c.213	p.V71	0.270	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF738	0	genome.wustl.edu	37	19	21568639	21568639	+	RNA	SNP	G	G	T	novel	unknown	TCGA-D8-A1JL-01A-11D-A13L-09	TCGA-D8-A1JL-10A-01D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	425dbc9f-6bee-412a-b77a-22a2724ea4c6	7929b553-0e4b-4bd4-ad98-5256d9aca6b8	19	21568639	21568639	G	T	SNP	ZNF738	NR_027130.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
