Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACTN4	81	genome.wustl.edu	37	19	39216514	39216514	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	19	39216514	39216514	G	T	SNP	ACTN4	NM_004924.3	human	genbank	58_37c	+1	reviewed	missense	c.2161	p.D721Y	1.000	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_efhand_Ca_insen,superfamily_Calponin-homology,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473	-	no_errors
C7orf50	84310	genome.wustl.edu	37	7	1037383	1037383	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	7	1037383	1037383	C	A	SNP	C7orf50	NM_001134395.1	human	genbank	58_37c	-1	validated	missense	c.463	p.A155S	0.969	HMMPfam_DUF2373	HMMPfam_DUF2373	-	no_errors
COL1A1	1277	genome.wustl.edu	37	17	48274595	48274595	+	Splice_Site	SNP	C	C	T	rs67163049	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	17	48274595	48274595	C	T	SNP	COL1A1	NM_000088.3	human	genbank	58_37c	-1	reviewed	splice_site	c.697-1	e10-1	1.000	-	-	-	no_errors
DAO	1610	genome.wustl.edu	37	12	109288095	109288095	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	12	109288095	109288095	G	A	SNP	DAO	NM_001917.4	human	genbank	58_37c	+1	reviewed	silent	c.564	p.A188	0.107	HMMPfam_DAO,superfamily_Nucleotide-binding domain	PatternScan_AA_TRNA_LIGASE_I,HMMPfam_DAO,PatternScan_DAO,superfamily_Nucleotide-binding domain,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
DIP2B	57609	genome.wustl.edu	37	12	51128870	51128870	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	12	51128870	51128870	A	G	SNP	DIP2B	NM_173602.2	human	genbank	58_37c	+1	validated	missense	c.4058	p.E1353G	1.000	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like	-	no_errors
DIS3	22894	genome.wustl.edu	37	13	73349502	73349502	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	13	73349502	73349502	C	T	SNP	DIS3	NM_014953.3	human	genbank	58_37c	-1	validated	silent	c.834	p.Q278	1.000	NULL	HMMPfam_RNB,PatternScan_RIBONUCLEASE_II,HMMSmart_SM00670,superfamily_PIN domain-like	-	no_errors
ENSG00000236623	0	genome.wustl.edu	37	10	42391839	42391839	+	RNA	DEL	G	G	-	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	10	42391839	42391839	G	-	DEL	ENSG00000236623	ENST00000423802	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000245620	0	genome.wustl.edu	37	17	56382662	56382662	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	17	56382662	56382662	G	A	SNP	BZRAP1	NM_004758.2	human	genbank	58_37c	-1	validated	intronic	c.5433+86	e29+86	0.000	-	-	-	no_errors
ESR1	2099	genome.wustl.edu	37	6	152129128	152129131	+	Frame_Shift_Del	DEL	CCGT	CCGT	-	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	CCGT	CCGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	6	152129128	152129131	CCGT	-	DEL	ESR1	NM_000125.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.81_84	p.P29fs	0.656:0.976:0.987:0.995	HMMPfam_Oest_recep	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_Oest_recep,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8115922	8115923	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	10	8115922	8115923	-	C	INS	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1271_1272	p.P426fs	1.000:1.000	NULL	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GDPD1	284161	genome.wustl.edu	37	17	57326133	57326133	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	17	57326133	57326133	C	T	SNP	GDPD1	NM_182569.3	human	genbank	58_37c	+1	validated	silent	c.354	p.V118	0.997	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases	-	no_errors
LILRB2	10288	genome.wustl.edu	37	19	54784374	54784374	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	19	54784374	54784374	C	T	SNP	LILRB2	ENST00000391747	human	ensembl	58_37c	-1	known	missense	c.29	p.S10N	0.000	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
LTBP4	8425	genome.wustl.edu	37	19	41125311	41125311	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	19	41125311	41125311	G	T	SNP	LTBP4	ENST00000308370	human	ensembl	58_37c	+1	known	nonsense	c.3328	p.E1110*	0.996	PatternScan_ASX_HYDROXYL,HMMSmart_EGF,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_TB,superfamily_Fibril-assoc,HMMPfam_EGF,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56152454	56152455	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	5	56152454	56152455	-	A	INS	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.510_511	p.G171fs	0.997:1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MGAM	8972	genome.wustl.edu	37	7	141752647	141752647	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	7	141752647	141752647	G	T	SNP	MGAM	NM_004668.2	human	genbank	58_37c	+1	reviewed	missense	c.3022	p.V1008F	0.014	NULL	HMMPfam_Glyco_hydro_31,HMMPfam_Trefoil	-	no_errors
MMP15	4324	genome.wustl.edu	37	16	58075625	58075625	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	16	58075625	58075625	C	A	SNP	MMP15	NM_002428.2	human	genbank	58_37c	+1	reviewed	missense	c.1015	p.P339T	1.000	NULL	superfamily_Hemopexin,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_ZINC_PROTEASE,HMMSmart_ZnMc,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_HX,superfamily_SSF55486	-	no_errors
MYO7A	4647	genome.wustl.edu	37	11	76872024	76872024	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	11	76872024	76872024	C	T	SNP	MYO7A	NM_000260.3	human	genbank	58_37c	+1	reviewed	silent	c.1206	p.I402	0.996	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_MyTH4,HMMSmart_SM00139,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_FERM_N,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NUDT22	84304	genome.wustl.edu	37	11	63994510	63994510	+	Missense_Mutation	SNP	C	C	G	rs34448455	byCluster;byFrequency	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	11	63994510	63994510	C	G	SNP	NUDT22	NM_001128612.1	human	genbank	58_37c	+1	validated	missense	c.386	p.T129R	0.988	NULL	NULL	-	no_errors
OR10Z1	128368	genome.wustl.edu	37	1	158577134	158577134	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	1	158577134	158577134	G	C	SNP	OR10Z1	NM_001004478.1	human	genbank	58_37c	+1	provisional	missense	c.906	p.R302S	0.032	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
RALGAPA1	253959	genome.wustl.edu	37	14	36155819	36155819	+	Missense_Mutation	SNP	C	C	T	rs142557972	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	14	36155819	36155819	C	T	SNP	RALGAPA1	NM_194301.2	human	genbank	58_37c	-1	provisional	missense	c.2488	p.G830S	1.000	NULL	HMMPfam_Rap_GAP,superfamily_SSF111347	-	no_errors
SLC12A5	57468	genome.wustl.edu	37	20	44665941	44665941	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	20	44665941	44665941	G	T	SNP	SLC12A5	NM_001134771.1	human	genbank	58_37c	+1	reviewed	missense	c.598	p.G200W	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SLC38A8	146167	genome.wustl.edu	37	16	84050323	84050323	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	16	84050323	84050323	C	T	SNP	SLC38A8	NM_001080442.1	human	genbank	58_37c	-1	provisional	missense	c.963	p.M321I	1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
SNX20	124460	genome.wustl.edu	37	16	50709816	50709816	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	16	50709816	50709816	C	T	SNP	SNX20	NM_182854.2	human	genbank	58_37c	-1	validated	silent	c.147	p.L49	0.046	NULL	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain	-	no_errors
USP11	8237	genome.wustl.edu	37	X	47101513	47101513	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	X	47101513	47101513	A	G	SNP	USP11	NM_004651.3	human	genbank	58_37c	+1	reviewed	silent	c.1341	p.K447	1.000	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,HMMSmart_DUSP,HMMPfam_DUF1055,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
WRNIP1	56897	genome.wustl.edu	37	6	2785389	2785389	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	6	2785389	2785389	G	A	SNP	WRNIP1	NM_020135.2	human	genbank	58_37c	+1	reviewed	missense	c.1871	p.R624K	1.000	NULL	HMMSmart_SM00382,HMMPfam_AAA,HMMSmart_SM00734,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
