Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ALS2CR11	151254	genome.wustl.edu	37	2	202358909	202358909	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	2	202358909	202358909	T	-	DEL	ALS2CR11	ENST00000439140	human	ensembl	58_37c	-1	known	frame_shift_del	c.2155	p.S719fs	0.000	NULL	NULL	-	no_errors
C2	717	genome.wustl.edu	37	6	31896624	31896624	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	6	31896624	31896624	G	A	SNP	C2	NM_000063.4	human	genbank	58_37c	+1	reviewed	silent	c.372	p.R124	1.000	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Trypsin,HMMSmart_SM00020,HMMPfam_VWA,HMMSmart_SM00327,superfamily_Trypsin-like serine proteases,superfamily_Complement control module/SCR domain,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,superfamily_vWA-like	-	no_errors
C9orf9	11092	genome.wustl.edu	37	9	135763881	135763881	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	9	135763881	135763881	G	A	SNP	C9orf9	ENST00000356311	human	ensembl	58_37c	+1	known	silent	c.552	p.Q184	0.005	NULL	NULL	-	no_errors
CCNB3	85417	genome.wustl.edu	37	X	50037884	50037884	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	50037884	50037884	C	G	SNP	CCNB3	NM_033031.2	human	genbank	58_37c	+1	reviewed	missense	c.226	p.Q76E	0.004	NULL	HMMPfam_Cyclin_C,HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like	-	no_errors
CGA	1081	genome.wustl.edu	37	6	87796031	87796031	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	6	87796031	87796031	C	T	SNP	CGA	NM_000735.2	human	genbank	58_37c	-1	reviewed	silent	c.210	p.T70	0.987	HMMPfam_Hormone_6,HMMSmart_SM00067,superfamily_Cystine-knot cytokines	HMMPfam_Hormone_6,HMMSmart_SM00067,PatternScan_GLYCO_HORMONE_ALPHA_1,PatternScan_GLYCO_HORMONE_ALPHA_2,superfamily_Cystine-knot cytokines	-	no_errors
CHD8	57680	genome.wustl.edu	37	14	21859709	21859709	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	14	21859709	21859709	C	A	SNP	CHD8	NM_020920.3	human	genbank	58_37c	-1	reviewed	silent	c.6141	p.L2047	1.000	HMMPfam_BRK,HMMSmart_SM00592	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CLYBL	171425	genome.wustl.edu	37	13	100518535	100518535	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	13	100518535	100518535	C	T	SNP	CLYBL	ENST00000339105	human	ensembl	58_37c	+1	known	missense	c.676	p.R226W	1.000	HMMPfam_HpcH_HpaI,superfamily_Phosphoenolpyruvate/pyruvate domain	HMMPfam_HpcH_HpaI,superfamily_Phosphoenolpyruvate/pyruvate domain	-	no_errors
CMTM5	116173	genome.wustl.edu	37	14	23848056	23848056	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	14	23848056	23848056	G	T	SNP	CMTM5	ENST00000339180	human	ensembl	58_37c	+1	known	missense	c.458	p.C153F	0.009	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
DMD	1756	genome.wustl.edu	37	X	31152232	31152232	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	31152232	31152232	G	T	SNP	DMD	NM_004006.2	human	genbank	58_37c	-1	reviewed	missense	c.11001	p.F3667L	1.000	NULL	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,superfamily_Prefoldin,superfamily_t-snare proteins,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
DUPD1	338599	genome.wustl.edu	37	10	76818229	76818229	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	10	76818229	76818229	G	T	SNP	DUPD1	NM_001003892.1	human	genbank	58_37c	-1	provisional	nonsense	c.44	p.S15*	0.000	NULL	HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_DSPc,superfamily_SSF52799	-	no_errors
E2F1	1869	genome.wustl.edu	37	20	32267640	32267640	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	20	32267640	32267640	G	A	SNP	E2F1	NM_005225.2	human	genbank	58_37c	-1	reviewed	missense	c.493	p.R165W	1.000	HMMPfam_E2F_TDP,superfamily_SSF46785	HMMPfam_E2F_TDP,superfamily_SSF46785	-	no_errors
ENSG00000185864	0	genome.wustl.edu	37	16	21854855	21854855	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	16	21854855	21854855	G	A	SNP	ENSG00000185864	ENST00000341400	human	ensembl	58_37c	-1	known	nonsense	c.397	p.R133*	0.003	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
ERVFRDE1	0	genome.wustl.edu	37	6	11103979	11103979	+	Missense_Mutation	SNP	G	G	T	rs138651238	by1000genomes	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	6	11103979	11103979	G	T	SNP	ERVFRDE1	NM_207582.2	human	genbank	58_37c	-1	validated	missense	c.1565	p.T522K	0.003	NULL	HMMPfam_TLV_coat	-	no_errors
FBXL3	26224	genome.wustl.edu	37	13	77595895	77595895	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	13	77595895	77595895	C	G	SNP	FBXL3	NM_012158.2	human	genbank	58_37c	-1	reviewed	missense	c.101	p.C34S	0.014	HMMPfam_F-box,superfamily_SSF81383	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047,superfamily_SSF81383	-	no_errors
GLG1	2734	genome.wustl.edu	37	16	74486107	74486107	+	RNA	SNP	A	A	C	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	16	74486107	74486107	A	C	SNP	GLG1	NR_027264.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.003	-	-	-	no_errors
IFITM3	10410	genome.wustl.edu	37	11	320790	320790	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	11	320790	320790	G	T	SNP	IFITM3	NM_021034.2	human	genbank	58_37c	-1	validated	missense	c.24	p.F8L	0.000	NULL	HMMPfam_CD225	-	no_errors
IRAK3	11213	genome.wustl.edu	37	12	66641568	66641568	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	12	66641568	66641568	T	G	SNP	IRAK3	NM_007199.2	human	genbank	58_37c	+1	reviewed	missense	c.1408	p.F470V	0.716	superfamily_Protein kinase-like (PK-like)	HMMPfam_Death,HMMSmart_SM00005,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_DEATH domain,HMMPfam_Pkinase	-	no_errors
KLHL38	340359	genome.wustl.edu	37	8	124664638	124664638	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	8	124664638	124664638	C	T	SNP	KLHL38	NM_001081675.2	human	genbank	58_37c	-1	validated	missense	c.529	p.A177T	0.311	HMMPfam_BACK	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LOC100288765	0	genome.wustl.edu	37	9	69847032	69847032	+	Missense_Mutation	SNP	C	C	A	rs2491581	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	9	69847032	69847032	C	A	SNP	LOC100288765	XM_002342925.1	human	genbank	58_37c	+1	model	missense	c.1126	p.Q376K	0.892	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
MEGF8	1954	genome.wustl.edu	37	19	42862378	42862378	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	19	42862378	42862378	G	A	SNP	MEGF8	NM_001410.2	human	genbank	58_37c	+1	validated	silent	c.4893	p.L1631	0.999	superfamily_Gal_oxid_central	PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB,HMMSmart_EGF_CA,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_PSI,HMMSmart_PSI,HMMSmart_EGF,HMMPfam_Kelch_1,superfamily_Gal_oxid_central,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF57196	-	no_errors
NOVA2	4858	genome.wustl.edu	37	19	46457123	46457123	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	19	46457123	46457123	C	T	SNP	NOVA2	NM_002516.2	human	genbank	58_37c	-1	validated	missense	c.311	p.R104Q	1.000	HMMSmart_KH,superfamily_SSF54791	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791	-	no_errors
OCRL	4952	genome.wustl.edu	37	X	128692644	128692644	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	128692644	128692644	G	T	SNP	OCRL	NM_000276.3	human	genbank	58_37c	+1	reviewed	missense	c.474	p.M158I	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like,superfamily_GTPase activation domain GAP	-	no_errors
OR2W5	441932	genome.wustl.edu	37	1	247654805	247654805	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	1	247654805	247654805	G	A	SNP	OR2W5	NM_001004698.2	human	genbank	58_37c	+1	validated	missense	c.376	p.V126I	0.412	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR5AR1	219493	genome.wustl.edu	37	11	56431680	56431680	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	11	56431680	56431680	C	T	SNP	OR5AR1	NM_001004730.1	human	genbank	58_37c	+1	provisional	silent	c.519	p.I173	0.574	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR5T2	219464	genome.wustl.edu	37	11	56000198	56000198	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	11	56000198	56000198	G	A	SNP	OR5T2	NM_001004746.1	human	genbank	58_37c	-1	provisional	missense	c.464	p.A155V	0.957	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCDHGA7	56108	genome.wustl.edu	37	5	140764680	140764680	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	5	140764680	140764680	G	A	SNP	PCDHGA7	NM_018920.2	human	genbank	58_37c	+1	reviewed	silent	c.2214	p.S738	0.173	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PGLYRP3	114771	genome.wustl.edu	37	1	153270481	153270481	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	1	153270481	153270481	C	A	SNP	PGLYRP3	NM_052891.1	human	genbank	58_37c	-1	provisional	missense	c.977	p.G326V	0.802	HMMPfam_Amidase_2,HMMSmart_Ami_2,superfamily_Amidase_2	HMMPfam_Amidase_2,HMMSmart_Ami_2,superfamily_Amidase_2,HMMSmart_PGRP	-	no_errors
PGM5	5239	genome.wustl.edu	37	9	70993224	70993224	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	9	70993224	70993224	G	T	SNP	PGM5	NM_021965.3	human	genbank	58_37c	+1	validated	missense	c.371	p.C124F	1.000	HMMPfam_PGM_PMM_I,superfamily_Phosphoglucomutase first 3 domains,PatternScan_PGM_PMM,PatternScan_TRYPSIN_HIS	HMMPfam_PGM_PMM_IV,HMMPfam_PGM_PMM_I,HMMPfam_PGM_PMM_II,HMMPfam_PGM_PMM_III,superfamily_Phosphoglucomutase first 3 domains,PatternScan_PGM_PMM,PatternScan_TRYPSIN_HIS,superfamily_Phosphoglucomutase C-terminal domain	-	no_errors
PHYHIPL	84457	genome.wustl.edu	37	10	60994219	60994230	+	In_Frame_Del	DEL	AACAAGAAAGAG	AACAAGAAAGAG	-	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	AACAAGAAAGAG	AACAAGAAAGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	10	60994219	60994230	AACAAGAAAGAG	-	DEL	PHYHIPL	NM_032439.3	human	genbank	58_37c	+1	validated	in_frame_del	c.262_273	p.KENK90in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_fn3,superfamily_Fibronectin type III	HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	3	178952085	178952085	A	T	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047L	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PPID	5481	genome.wustl.edu	37	4	159644428	159644428	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	4	159644428	159644428	A	C	SNP	PPID	NM_005038.2	human	genbank	58_37c	-1	reviewed	missense	c.13	p.S5A	0.189	superfamily_Cyclophilin-like	HMMPfam_TPR_1,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_Cyclophilin-like,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
PRRX1	5396	genome.wustl.edu	37	1	170695377	170695377	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	1	170695377	170695377	G	A	SNP	PRRX1	NM_022716.2	human	genbank	58_37c	+1	reviewed	missense	c.434	p.R145Q	1.000	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_OAR,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
RNF113A	7737	genome.wustl.edu	37	X	119005097	119005097	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	119005097	119005097	C	A	SNP	RNF113A	NM_006978.2	human	genbank	58_37c	-1	reviewed	missense	c.480	p.Q160H	0.998	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850,superfamily_SSF90229	-	no_errors
RP1	6101	genome.wustl.edu	37	8	55533917	55533917	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	8	55533917	55533917	C	T	SNP	RP1	NM_006269.1	human	genbank	58_37c	+1	reviewed	missense	c.391	p.R131W	1.000	NULL	HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837	-	no_errors
RUNX1	861	genome.wustl.edu	37	21	36206729	36206736	+	Frame_Shift_Del	DEL	AGGGTTAA	AGGGTTAA	-	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	AGGGTTAA	AGGGTTAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	21	36206729	36206736	AGGGTTAA	-	DEL	RUNX1	NM_001754.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.783_776	p.F259fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
SLC12A9	56996	genome.wustl.edu	37	7	100456724	100456724	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	7	100456724	100456724	C	T	SNP	SLC12A9	NM_020246.2	human	genbank	58_37c	+1	validated	silent	c.918	p.V306	0.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SLC40A1	30061	genome.wustl.edu	37	2	190428591	190428591	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	2	190428591	190428591	A	C	SNP	SLC40A1	NM_014585.5	human	genbank	58_37c	-1	reviewed	missense	c.1121	p.L374R	0.978	superfamily_MFS general substrate transporter	HMMPfam_FPN1,superfamily_MFS general substrate transporter	-	no_errors
SLIT1	6585	genome.wustl.edu	37	10	98816176	98816176	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	10	98816176	98816176	G	T	SNP	SLIT1	NM_003061.2	human	genbank	58_37c	-1	validated	missense	c.1203	p.F401L	1.000	HMMSmart_SM00369,superfamily_L domain-like	PatternScan_ASX_HYDROXYL,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00282,HMMSmart_SM00179,HMMSmart_SM00369,HMMSmart_SM00274,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMSmart_SM00365,superfamily_L domain-like,superfamily_EGF/Laminin	-	no_errors
SLMAP	7871	genome.wustl.edu	37	3	57875847	57875847	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	3	57875847	57875847	A	G	SNP	SLMAP	ENST00000467901	human	ensembl	58_37c	+1	known	3_prime_untranslated_region	c.*57875847	NULL	0.000	-	-	-	no_coding_region
SMC1A	8243	genome.wustl.edu	37	X	53439174	53439174	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	53439174	53439174	C	T	SNP	SMC1A	NM_006306.2	human	genbank	58_37c	-1	reviewed	missense	c.884	p.R295Q	1.000	HMMPfam_SMC_N,superfamily_SSF52540	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540	-	no_errors
TMEM146	257062	genome.wustl.edu	37	19	5744496	5744496	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	19	5744496	5744496	C	T	SNP	TMEM146	NM_152784.3	human	genbank	58_37c	+1	validated	missense	c.632	p.A211V	0.012	NULL	NULL	-	no_errors
UBA1	7317	genome.wustl.edu	37	X	47065655	47065655	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	X	47065655	47065655	A	T	SNP	UBA1	NM_003334.3	human	genbank	58_37c	+1	reviewed	missense	c.1750	p.M584L	1.000	HMMPfam_ThiF,superfamily_MoeB	HMMPfam_UBACT,HMMPfam_ThiF,superfamily_MoeB,PatternScan_UBIQUITIN_ACTIVAT_1,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBA_e1_C,HMMPfam_UBA_e1_thiolCys	-	no_errors
VPS13B	157680	genome.wustl.edu	37	8	100883111	100883111	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	8	100883111	100883111	G	A	SNP	VPS13B	NM_017890.3	human	genbank	58_37c	+1	reviewed	missense	c.11566	p.V3856I	1.000	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
VPS28	51160	genome.wustl.edu	37	8	145649475	145649475	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A154-01A-11D-A10Y-09	TCGA-E2-A154-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	336e39fb-d407-4ced-b7bb-e8ff5329abdb	2a64a2d9-2683-40fb-9e22-43cb3185321c	8	145649475	145649475	C	T	SNP	VPS28	NM_183057.1	human	genbank	58_37c	-1	reviewed	missense	c.497	p.R166H	0.996	HMMPfam_VPS28	HMMPfam_VPS28	-	no_errors
