Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCB10	0	genome.wustl.edu	37	1	229676385	229676385	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	1	229676385	229676385	C	G	SNP	ABCB10	NM_012089.2	human	genbank	58_37c	-1	reviewed	missense	c.1171	p.E391Q	1.000	HMMPfam_ABC_membrane,superfamily_ABC_TM_1	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
ABCB10	0	genome.wustl.edu	37	1	229678083	229678083	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	1	229678083	229678083	C	G	SNP	ABCB10	NM_012089.2	human	genbank	58_37c	-1	reviewed	missense	c.957	p.L319F	1.000	HMMPfam_ABC_membrane,superfamily_ABC_TM_1	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
ALOX15	0	genome.wustl.edu	37	17	4535496	4535496	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	17	4535496	4535496	C	T	SNP	ALOX15	NM_001140.3	human	genbank	58_37c	-1	validated	missense	c.1621	p.A541T	0.999	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_2,PatternScan_LIPOXYGENASE_1,superfamily_Lipoxygenase	-	no_errors
AQP11	0	genome.wustl.edu	37	11	77301600	77301600	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	11	77301600	77301600	G	A	SNP	AQP11	NM_173039.1	human	genbank	58_37c	+1	provisional	missense	c.563	p.R188Q	0.002	superfamily_MIP	PatternScan_MIP,superfamily_MIP	-	no_errors
C10orf18	0	genome.wustl.edu	37	10	5788704	5788704	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	10	5788704	5788704	T	C	SNP	C10orf18	NM_017782.4	human	genbank	58_37c	+1	validated	missense	c.3320	p.L1107P	0.000	NULL	NULL	-	no_errors
C20orf12	0	genome.wustl.edu	37	20	18414355	18414355	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	20	18414355	18414355	C	T	SNP	C20orf12	NM_001099407.1	human	genbank	58_37c	-1	validated	missense	c.802	p.V268M	1.000	HMMSmart_ZnF_RBZ	HMMSmart_ZnF_RBZ,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
C20orf200	0	genome.wustl.edu	37	20	61143471	61143471	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	20	61143471	61143471	C	T	SNP	C20orf200	ENST00000412495	human	ensembl	58_37c	-1	known	missense	c.377	p.R126H	0.010	NULL	NULL	-	no_errors
C6orf70	0	genome.wustl.edu	37	6	170159085	170159085	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	6	170159085	170159085	G	A	SNP	C6orf70	NM_018341.1	human	genbank	58_37c	+1	validated	missense	c.529	p.V177I	0.007	NULL	NULL	-	no_errors
CACNA1D	0	genome.wustl.edu	37	3	53804500	53804500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	3	53804500	53804500	G	A	SNP	CACNA1D	NM_000720.2	human	genbank	58_37c	+1	validated	missense	c.4025	p.R1342Q	1.000	HMMPfam_Ion_trans,superfamily_SSF81324	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_SSF81324	-	no_errors
CAPRIN2	0	genome.wustl.edu	37	12	30872133	30872133	+	Silent	SNP	C	C	A	rs143445368	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	12	30872133	30872133	C	A	SNP	CAPRIN2	NM_001002259.1	human	genbank	58_37c	-1	validated	silent	c.2175	p.P725	0.002	NULL	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like	-	no_errors
CCDC144NL	0	genome.wustl.edu	37	17	20799309	20799309	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	17	20799309	20799309	G	A	SNP	CCDC144NL	NM_001004306.1	human	genbank	58_37c	-1	provisional	missense	c.25	p.R9W	0.000	NULL	NULL	-	no_errors
CDC42EP1	0	genome.wustl.edu	37	22	37964206	37964206	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	22	37964206	37964206	C	T	SNP	CDC42EP1	NM_152243.2	human	genbank	58_37c	+1	reviewed	silent	c.555	p.P185	0.000	NULL	HMMPfam_PBD,HMMSmart_SM00285	-	no_errors
CDK11A	0	genome.wustl.edu	37	1	1582504	1582504	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	1	1582504	1582504	A	G	SNP	CDK11A	ENST00000340677	human	ensembl	58_37c	-1	known	missense	c.335	p.M112T	0.001	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_errors
CHI3L1	0	genome.wustl.edu	37	1	203154343	203154344	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	1	203154343	203154344	-	C	INS	CHI3L1	NM_001276.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.226_225	p.L75fs	0.986:0.005	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_18,PatternScan_CHITINASE_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat,superfamily_SSF54556	-	no_errors
CNTNAP5	0	genome.wustl.edu	37	2	125405531	125405531	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	2	125405531	125405531	G	A	SNP	CNTNAP5	NM_130773.2	human	genbank	58_37c	+1	reviewed	silent	c.2070	p.T690	0.037	superfamily_ConA_like_lec_gl	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_LamG,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen_a/b/g_C,HMMPfam_EGF,HMMSmart_EGF,superfamily_Gal_bind_like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
CXorf38	0	genome.wustl.edu	37	X	40506283	40506283	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	X	40506283	40506283	G	T	SNP	CXorf38	NM_144970.2	human	genbank	58_37c	-1	validated	silent	c.327	p.P109	0.001	NULL	NULL	-	no_errors
DGAT2	0	genome.wustl.edu	37	11	75501262	75501262	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	11	75501262	75501262	A	G	SNP	DGAT2	NM_032564.3	human	genbank	58_37c	+1	validated	missense	c.280	p.I94V	0.997	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
DIP2C	0	genome.wustl.edu	37	10	395377	395377	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	10	395377	395377	C	T	SNP	DIP2C	NM_014974.2	human	genbank	58_37c	-1	reviewed	silent	c.3003	p.S1001	0.018	superfamily_SSF56801	HMMPfam_AMP-binding,HMMPfam_DMAP_binding,PatternScan_AMP_BINDING,superfamily_SSF56801	-	no_errors
EDAR	0	genome.wustl.edu	37	2	109547441	109547441	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	2	109547441	109547441	C	T	SNP	EDAR	NM_022336.3	human	genbank	58_37c	-1	reviewed	silent	c.30	p.T10	0.019	NULL	HMMPfam_Death,PatternScan_TNFR_NGFR_1,superfamily_DEATH_like	-	no_errors
EFCAB6	0	genome.wustl.edu	37	22	44004466	44004466	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	22	44004466	44004466	G	A	SNP	EFCAB6	NM_022785.2	human	genbank	58_37c	-1	validated	silent	c.2577	p.T859	0.036	superfamily_EF-hand	HMMSmart_SM00054,HMMPfam_DUF1880,PatternScan_EF_HAND_1,superfamily_EF-hand	-	no_errors
ENSG00000183704	0	genome.wustl.edu	37	Y	13500639	13500639	+	Missense_Mutation	SNP	C	C	T	rs71283434	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	Y	13500639	13500639	C	T	SNP	ENSG00000183704	ENST00000331172	human	ensembl	58_37c	-1	known	missense	c.638	p.R213K	0.790	NULL	NULL	-	no_errors
ENSG00000221917	0	genome.wustl.edu	37	9	69441043	69441043	+	Silent	SNP	C	C	T	rs71223554	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	9	69441043	69441043	C	T	SNP	ENSG00000221917	ENST00000333394	human	ensembl	58_37c	+1	known	silent	c.531	p.T177	0.061	NULL	NULL	-	no_errors
ENSG00000228253	0	genome.wustl.edu	37	MT	8372	8372	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	MT	8372	8372	C	T	SNP	ENSG00000228253	ENST00000361851	human	ensembl	58_37c	+1	known	nonsense	c.7	p.Q3*	NULL	HMMPfam_ATP-synt_8	HMMPfam_ATP-synt_8	-	mismatch_between_exon_seq_and_reference
EPHA5	0	genome.wustl.edu	37	4	66286192	66286192	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	4	66286192	66286192	G	T	SNP	EPHA5	NM_004439.5	human	genbank	58_37c	-1	reviewed	silent	c.1494	p.I498	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_EGF_2,HMMPfam_BmKX,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
GABRA4	0	genome.wustl.edu	37	4	46967096	46967096	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	4	46967096	46967096	T	G	SNP	GABRA4	NM_000809.2	human	genbank	58_37c	-1	reviewed	missense	c.1025	p.Y342S	1.000	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
GLUD2	0	genome.wustl.edu	37	X	120181770	120181770	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	X	120181770	120181770	G	A	SNP	GLUD2	NM_012084.3	human	genbank	58_37c	+1	reviewed	missense	c.232	p.A78T	1.000	superfamily_SSF53223	PatternScan_GLFV_DEHYDROGENASE,HMMPfam_ELFV_dehydrog,HMMPfam_ELFV_dehydrog_N,superfamily_NAD(P)-bd,superfamily_SSF53223	-	no_errors
GRK7	0	genome.wustl.edu	37	3	141499486	141499486	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	3	141499486	141499486	T	C	SNP	GRK7	NM_139209.2	human	genbank	58_37c	+1	reviewed	missense	c.883	p.F295L	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMPfam_RGS,HMMSmart_RGS,HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_Regulat_G_prot_signal_superfam,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
GRM7	0	genome.wustl.edu	37	3	7188164	7188164	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	3	7188164	7188164	C	T	SNP	GRM7	NM_181874.2	human	genbank	58_37c	+1	reviewed	missense	c.545	p.T182M	0.999	HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,superfamily_SSF53822	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822	-	no_errors
GTF3C1	0	genome.wustl.edu	37	16	27497439	27497439	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	16	27497439	27497439	T	G	SNP	GTF3C1	NM_001520.3	human	genbank	58_37c	-1	validated	missense	c.3737	p.Y1246S	1.000	NULL	HMMPfam_B-block_TFIIIC	-	no_errors
HDAC6	0	genome.wustl.edu	37	X	48675747	48675747	+	Silent	SNP	T	T	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	X	48675747	48675747	T	A	SNP	HDAC6	NM_006044.2	human	genbank	58_37c	+1	reviewed	silent	c.1806	p.A602	0.839	HMMPfam_Hist_deacetyl,superfamily_SSF52768	HMMPfam_Hist_deacetyl,HMMPfam_zf-UBP,HMMSmart_ZnF_UBP,superfamily_SSF52768	-	no_errors
KDM6A	0	genome.wustl.edu	37	X	44894229	44894232	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	X	44894229	44894232	AAGT	-	DEL	KDM6A	NM_021140.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.618_619	p.E206fs	1.000:1.000	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452	HMMPfam_TPR_1,HMMSmart_JmjC,HMMPfam_JmjC,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
KRT1	0	genome.wustl.edu	37	12	53069223	53069243	+	In_Frame_Del	DEL	ACCTCCGGAGCCGTAGCTGCT	ACCTCCGGAGCCGTAGCTGCT	-	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	ACCTCCGGAGCCGTAGCTGCT	ACCTCCGGAGCCGTAGCTGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	12	53069223	53069243	ACCTCCGGAGCCGTAGCTGCT	-	DEL	KRT1	NM_006121.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1689_1669	p.SSYGSGG557in_frame_del	0.630:0.649:0.647:0.620:0.134:0.123:0.092:0.297:0.354:0.356:0.356:0.216:0.007:0.001:0.003:0.006:0.057:0.050:0.289:0.318:0.300	NULL	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors
LARP4B	0	genome.wustl.edu	37	10	875659	875659	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	10	875659	875659	G	A	SNP	LARP4B	NM_015155.1	human	genbank	58_37c	-1	provisional	nonsense	c.877	p.R293*	0.975	NULL	"HMMPfam_La,HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
LOC100288496	0	genome.wustl.edu	37	7	303145	303145	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	7	303145	303145	C	T	SNP	LOC100288496	XM_002342706.1	human	genbank	58_37c	+1	model	missense	c.371	p.A124V	0.001	NULL	NULL	-	no_errors
LOC642236	0	genome.wustl.edu	37	9	68438558	68438560	+	RNA	DEL	CTT	CTT	-	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	9	68438558	68438560	CTT	-	DEL	LOC642236	XR_041085.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000:1.000:1.000	-	-	-	no_errors
LOC653071	0	genome.wustl.edu	37	4	68411	68411	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	4	68411	68411	T	C	SNP	LOC653071	XR_078735.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.362	-	-	-	no_errors
LOC729501	0	genome.wustl.edu	37	13	19044000	19044000	+	Nonsense_Mutation	SNP	G	G	A	rs71228021	byFrequency	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	13	19044000	19044000	G	A	SNP	LOC729501	XM_002343229.1	human	genbank	58_37c	-1	model	nonsense	c.238	p.Q80*	1.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	pseudogene
MMP9	0	genome.wustl.edu	37	20	44637580	44637580	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	20	44637580	44637580	G	A	SNP	MMP9	NM_004994.2	human	genbank	58_37c	+1	reviewed	silent	c.15	p.Q5	0.192	NULL	"HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,superfamily_Hemopexin-like domain,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD-like,HMMSmart_SM00235,HMMPfam_PT,superfamily_Kringle-like,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_SM00120,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
MTCP1NB	0	genome.wustl.edu	37	X	154292281	154292281	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	X	154292281	154292281	C	T	SNP	MTCP1NB	ENST00000369479	human	ensembl	58_37c	-1	known	silent	c.18	p.P6	0.998	HMMPfam_DUF1903,superfamily_p8-MTCP1	HMMPfam_DUF1903,superfamily_p8-MTCP1	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195515134	195515134	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	3	195515134	195515134	G	T	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.3317	p.P1106H	0.037	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NCAN	0	genome.wustl.edu	37	19	19359641	19359641	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	19	19359641	19359641	G	A	SNP	NCAN	NM_004386.2	human	genbank	58_37c	+1	validated	missense	c.3770	p.R1257Q	0.972	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_Xlink,HMMSmart_LINK,PatternScan_LINK_1,HMMPfam_Lectin_C,HMMSmart_CLECT,HMMSmart_EGF_CA,HMMSmart_IG,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement_control_module,superfamily_C-type_lectin_fold,PatternScan_EGF_CA,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF48726,superfamily_SSF57196	-	no_errors
PGA3	0	genome.wustl.edu	37	11	60975059	60975059	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	11	60975059	60975059	C	T	SNP	PGA3	NM_001079807.1	human	genbank	58_37c	+1	validated	missense	c.428	p.T143I	0.292	HMMPfam_Asp,superfamily_Acid proteases	HMMPfam_Asp,PatternScan_ASP_PROTEASE,superfamily_Acid proteases,HMMPfam_A1_Propeptide	-	no_errors
PLEC	0	genome.wustl.edu	37	8	144995814	144995814	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	8	144995814	144995814	C	T	SNP	PLEC	NM_201380.2	human	genbank	58_37c	-1	reviewed	silent	c.8586	p.T2862	0.051	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat	-	no_errors
PNMAL2	0	genome.wustl.edu	37	19	46997888	46997888	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	19	46997888	46997888	G	A	SNP	PNMAL2	NM_020709.1	human	genbank	58_37c	-1	validated	missense	c.835	p.R279C	0.000	NULL	NULL	-	no_errors
PRDM15	0	genome.wustl.edu	37	21	43256225	43256225	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	21	43256225	43256225	G	A	SNP	PRDM15	NM_022115.3	human	genbank	58_37c	-1	validated	silent	c.2373	p.N791	0.982	NULL	HMMSmart_SET,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
RBMX	0	genome.wustl.edu	37	X	135960146	135960147	+	Frame_Shift_Ins	INS	-	-	AA	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	X	135960146	135960147	-	AA	INS	RBMX	NM_002139.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.316_315	p.P105fs	1.000:1.000	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RBM1CTR,superfamily_RNA-binding domain RBD	-	no_errors
RPS6KB1	0	genome.wustl.edu	37	17	57987923	57987923	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	17	57987923	57987923	G	A	SNP	RPS6KB1	NM_003161.2	human	genbank	58_37c	+1	reviewed	missense	c.142	p.G48S	1.000	NULL	HMMSmart_SM00133,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
SAMD4A	0	genome.wustl.edu	37	14	55255646	55255646	+	Missense_Mutation	SNP	G	G	A	rs147265708	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	14	55255646	55255646	G	A	SNP	SAMD4A	NM_015589.4	human	genbank	58_37c	+1	validated	missense	c.2138	p.R713Q	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain	-	no_errors
SERAC1	0	genome.wustl.edu	37	6	158535820	158535821	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	6	158535820	158535821	CC	-	DEL	SERAC1	NM_032861.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.1685_1684	p.D562fs	1.000:0.904	superfamily_alpha/beta-Hydrolases	superfamily_ARM repeat,superfamily_alpha/beta-Hydrolases	-	no_errors
SLC22A20	0	genome.wustl.edu	37	11	64993072	64993072	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	11	64993072	64993072	C	A	SNP	SLC22A20	ENST00000359762	human	ensembl	58_37c	+1	known	missense	c.949	p.P317T	0.000	NULL	superfamily_MFS general substrate transporter	-	no_errors
SLC43A1	0	genome.wustl.edu	37	11	57252590	57252590	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	11	57252590	57252590	G	A	SNP	SLC43A1	NM_003627.4	human	genbank	58_37c	-1	provisional	silent	c.1659	p.S553	0.000	NULL	superfamily_MFS general substrate transporter	-	no_errors
TMEM101	0	genome.wustl.edu	37	17	42090413	42090413	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	17	42090413	42090413	G	A	SNP	TMEM101	NM_032376.2	human	genbank	58_37c	-1	provisional	silent	c.429	p.T143	0.821	NULL	NULL	-	no_errors
TP53	0	genome.wustl.edu	37	17	7579432	7579433	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	17	7579432	7579433	-	G	INS	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.255_254	p.A86fs	0.024:0.243	NULL	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TTN	0	genome.wustl.edu	37	2	179581989	179581989	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	2	179581989	179581989	T	G	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.21740	p.K7247T	1.000	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
UBA7	0	genome.wustl.edu	37	3	49845239	49845239	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	3	49845239	49845239	C	T	SNP	UBA7	NM_003335.2	human	genbank	58_37c	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_MoeB,HMMPfam_UBA_e1_C	HMMPfam_UBACT,HMMPfam_ThiF,superfamily_MoeB,PatternScan_UBIQUITIN_ACTIVAT_1,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBA_e1_C,HMMPfam_UBA_e1_thiolCys	-	no_errors
UBTF	0	genome.wustl.edu	37	17	42290592	42290592	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	17	42290592	42290592	C	T	SNP	UBTF	NM_014233.2	human	genbank	58_37c	-1	validated	missense	c.533	p.R178Q	0.993	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box	-	no_errors
USP8	0	genome.wustl.edu	37	15	50741617	50741617	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	15	50741617	50741617	T	G	SNP	USP8	NM_001128610.1	human	genbank	58_37c	+1	validated	silent	c.270	p.L90	1.000	HMMPfam_DUF1873	HMMPfam_UCH,HMMPfam_Rhodanese,HMMSmart_RHOD,superfamily_Rhodanese-like,HMMPfam_DUF1873,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
XKR4	0	genome.wustl.edu	37	8	56435983	56435983	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	8	56435983	56435983	G	A	SNP	XKR4	NM_052898.1	human	genbank	58_37c	+1	provisional	missense	c.1150	p.A384T	1.000	HMMPfam_XK-related	HMMPfam_XK-related	-	no_errors
XPC	0	genome.wustl.edu	37	3	14190419	14190419	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	3	14190419	14190419	C	T	SNP	XPC	NM_004628.4	human	genbank	58_37c	-1	reviewed	silent	c.2145	p.R715	0.990	HMMPfam_BHD_2	HMMPfam_Rad4,HMMPfam_BHD_1,HMMPfam_BHD_2,HMMPfam_BHD_3	-	no_errors
ZNF487	0	genome.wustl.edu	37	10	43977766	43977767	+	RNA	INS	-	-	A	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	10	43977766	43977767	-	A	INS	ZNF487	NR_026693.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.990:1.000	-	-	-	pseudogene
ZNF69	0	genome.wustl.edu	37	19	12016691	12016691	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-E2-A1LK-01A-21D-A14G-09	TCGA-E2-A1LK-11A-12D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9	a115510a-b18f-43ae-82a8-ec0b4f1a7482	19	12016691	12016691	G	C	SNP	ZNF69	ENST00000429654	human	ensembl	58_37c	+1	known	missense	c.1479	p.L493F	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
