Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ANKRD18A	0	genome.wustl.edu	37	9	38595563	38595563	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	9	38595563	38595563	T	C	SNP	ANKRD18A	ENST00000399703	human	ensembl	58_37c	-1	known	missense	c.1774	p.R592G	0.580	NULL	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
BOD1L	0	genome.wustl.edu	37	4	13606148	13606148	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	4	13606148	13606148	T	A	SNP	BOD1L	NM_148894.2	human	genbank	58_37c	-1	validated	missense	c.2376	p.K792N	1.000	superfamily_SSF81995	HMMPfam_AT_hook,HMMSmart_AT_hook,superfamily_SSF81995	-	no_errors
BRF1	0	genome.wustl.edu	37	14	105766846	105766846	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	14	105766846	105766846	C	A	SNP	BRF1	NM_001519.2	human	genbank	58_37c	-1	reviewed	missense	c.121	p.V41L	1.000	HMMPfam_TFIIB_Zn_Ribbon,superfamily_Zinc beta-ribbon	HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_BRF1,HMMPfam_TFIIB_Zn_Ribbon,HMMPfam_TFIIB,superfamily_Zinc beta-ribbon	-	no_errors
C10orf91	0	genome.wustl.edu	37	10	134261527	134261527	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	10	134261527	134261527	G	A	SNP	C10orf91	NM_173541.2	human	genbank	58_37c	+1	validated	missense	c.400	p.V134I	0.004	NULL	NULL	-	no_errors
C3orf63	0	genome.wustl.edu	37	3	56675495	56675495	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	3	56675495	56675495	T	C	SNP	C3orf63	NM_001112736.1	human	genbank	58_37c	-1	validated	missense	c.2501	p.E834G	1.000	NULL	NULL	-	no_errors
CD69	0	genome.wustl.edu	37	12	9907090	9907090	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	12	9907090	9907090	C	T	SNP	CD69	NR_026671.1	human	genbank	58_37c	-1	reviewed	rna	NULL	NULL	0.000	-	-	-	no_errors
CNKSR2	0	genome.wustl.edu	37	X	21666975	21666975	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	X	21666975	21666975	G	C	SNP	CNKSR2	NM_014927.3	human	genbank	58_37c	+1	reviewed	missense	c.2719	p.D907H	1.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1170,superfamily_SAM/Pointed domain,HMMPfam_CRIC_ras_sig,superfamily_PH domain-like	-	no_errors
CPXM2	0	genome.wustl.edu	37	10	125651030	125651030	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	10	125651030	125651030	C	T	SNP	CPXM2	NM_198148.2	human	genbank	58_37c	-1	validated	missense	c.146	p.R49H	0.000	NULL	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Carboxypeptidase regulatory domain,superfamily_Galactose-binding domain-like,superfamily_Zn-dependent exopeptidases	-	no_errors
CYP27A1	0	genome.wustl.edu	37	2	219679713	219679713	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	2	219679713	219679713	A	G	SNP	CYP27A1	NM_000784.3	human	genbank	58_37c	+1	reviewed	missense	c.1556	p.N519S	0.161	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
DLGAP5	0	genome.wustl.edu	37	14	55621420	55621420	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	14	55621420	55621420	T	C	SNP	DLGAP5	NM_014750.4	human	genbank	58_37c	-1	validated	missense	c.1978	p.T660A	0.000	NULL	HMMPfam_GKAP	-	no_errors
DNAI1	0	genome.wustl.edu	37	9	34500839	34500839	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	9	34500839	34500839	T	G	SNP	DNAI1	NM_012144.2	human	genbank	58_37c	+1	reviewed	splice_site	c.1019+2	e11+2	1.000	-	-	-	no_errors
EFR3B	0	genome.wustl.edu	37	2	25366711	25366711	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	2	25366711	25366711	C	G	SNP	EFR3B	NM_014971.1	human	genbank	58_37c	+1	validated	missense	c.2030	p.P677R	1.000	NULL	superfamily_ARM repeat	-	no_errors
ENSG00000223709	0	genome.wustl.edu	37	11	89796094	89796095	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	11	89796094	89796095	-	A	INS	ENSG00000223709	ENST00000436580	human	ensembl	58_37c	-1	known	frame_shift_ins	c.70_71	p.P24fs	0.583:0.597	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMSmart_SM00449,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
ENSG00000230462	0	genome.wustl.edu	37	16	32936991	32936991	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	16	32936991	32936991	T	C	SNP	ENSG00000230462	ENST00000423205	human	ensembl	58_37c	+1	known	missense	c.569	p.L190P	1.000	superfamily_PH domain-like	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP,superfamily_PH domain-like	-	no_start_codon:no_stop_codon
ENSG00000239076	0	genome.wustl.edu	37	16	90161730	90161730	+	RNA	SNP	C	C	T	rs7197477	byHapMap	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	16	90161730	90161730	C	T	SNP	ENSG00000239076	ENST00000458979	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
ENSG00000248855	0	genome.wustl.edu	37	3	195671977	195671977	+	RNA	SNP	G	A	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	3	195671977	195671977	G	A	SNP	ENSG00000248855	ENST00000508741	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors
ENSG00000249696	0	genome.wustl.edu	37	16	52305888	52305888	+	RNA	SNP	C	A	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	16	52305888	52305888	C	A	SNP	ENSG00000249696	ENST00000515084	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
FANK1	0	genome.wustl.edu	37	10	127585218	127585218	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	10	127585218	127585218	C	A	SNP	FANK1	NM_145235.3	human	genbank	58_37c	+1	validated	missense	c.7	p.P3T	1.000	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-	no_errors
GOLGA6L10	0	genome.wustl.edu	37	15	82635170	82635170	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	15	82635170	82635170	C	T	SNP	GOLGA6L10	XM_002343330.1	human	genbank	58_37c	-1	model	missense	c.1259	p.R420Q	0.161	NULL	NULL	-	no_errors
HDAC9	0	genome.wustl.edu	37	7	18669013	18669013	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	7	18669013	18669013	G	T	SNP	HDAC9	NM_178425.2	human	genbank	58_37c	+1	reviewed	missense	c.705	p.Q235H	1.000	NULL	HMMPfam_Hist_deacetyl,superfamily_SSF52768	-	no_errors
HK2	0	genome.wustl.edu	37	2	75099526	75099526	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	2	75099526	75099526	C	T	SNP	HK2	NM_000189.4	human	genbank	58_37c	+1	reviewed	missense	c.475	p.H159Y	1.000	HMMPfam_Hexokinase_1,PatternScan_HEXOKINASES,superfamily_SSF53067	HMMPfam_Hexokinase_1,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES,superfamily_SSF53067	-	no_errors
HMGB4	0	genome.wustl.edu	37	1	34329930	34329930	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	1	34329930	34329930	G	A	SNP	HMGB4	NM_145205.4	human	genbank	58_37c	+1	validated	silent	c.138	p.S46	0.168	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box	-	no_errors
HTR5A	0	genome.wustl.edu	37	7	154863345	154863345	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	7	154863345	154863345	G	T	SNP	HTR5A	NM_024012.2	human	genbank	58_37c	+1	reviewed	missense	c.736	p.V246L	0.458	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
IAPP	0	genome.wustl.edu	37	12	21531360	21531360	+	Nonstop_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	12	21531360	21531360	G	T	SNP	IAPP	NM_000415.2	human	genbank	58_37c	+1	reviewed	nonstop	c.270	p.*90Y	0.925	NULL	HMMPfam_Calc_CGRP_IAPP,HMMSmart_CALCITONIN,PatternScan_CALCITONIN	-	no_errors
INPPL1	0	genome.wustl.edu	37	11	71943304	71943304	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	11	71943304	71943304	G	A	SNP	INPPL1	NM_001567.3	human	genbank	58_37c	+1	reviewed	missense	c.1636	p.V546I	1.000	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos	HMMSmart_IPPc,HMMPfam_SH2,HMMSmart_SH2,HMMPfam_SAM_1,HMMSmart_SAM,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos,superfamily_SAM_homology,superfamily_SSF55550	-	no_errors
ITM2A	0	genome.wustl.edu	37	X	78618485	78618485	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	X	78618485	78618485	C	A	SNP	ITM2A	NM_004867.4	human	genbank	58_37c	-1	reviewed	missense	c.395	p.S132I	0.826	NULL	HMMPfam_BRICHOS	-	no_errors
KIAA1324L	0	genome.wustl.edu	37	7	86554947	86554947	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	7	86554947	86554947	C	T	SNP	KIAA1324L	ENST00000423294	human	ensembl	58_37c	-1	known	missense	c.1177	p.G393R	0.357	superfamily_Growth factor receptor domain	superfamily_Mannose 6-phosphate receptor domain,superfamily_Growth factor receptor domain,HMMPfam_NCD3G	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
KRTAP5-5	0	genome.wustl.edu	37	11	1651191	1651199	+	In_Frame_Del	DEL	GGCTGTGGA	GGCTGTGGA	-	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	GGCTGTGGA	GGCTGTGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	11	1651191	1651199	GGCTGTGGA	-	DEL	KRTAP5-5	NM_001001480.2	human	genbank	58_37c	+1	validated	in_frame_del	c.121_129	p.GCG44in_frame_del	0.036:0.152:0.136:0.093:0.018:0.001:0.874:0.883:0.301	NULL	PatternScan_2FE2S_FER_1,PatternScan_MOLYBDOPTERIN_PROK_1	-	no_errors
LCE2B	0	genome.wustl.edu	37	1	152659414	152659414	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	1	152659414	152659414	G	T	SNP	LCE2B	NM_014357.4	human	genbank	58_37c	+1	reviewed	missense	c.95	p.C32F	0.148	NULL	NULL	-	no_errors
LOC100294460	0	genome.wustl.edu	37	16	67832	67832	+	Missense_Mutation	SNP	A	G	G	rs145341953	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	16	67832	67832	A	G	SNP	LOC100294460	XM_002347646.1	human	genbank	58_37c	+1	model	missense	c.580	p.K194E	0.014	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
LOC283685	0	genome.wustl.edu	37	15	23686010	23686011	+	In_Frame_Ins	INS	-	-	CTC	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	15	23686010	23686011	-	CTC	INS	LOC283685	XM_002343322.1	human	genbank	58_37c	-1	model	in_frame_ins	c.1438_1437	p.479in_frame_insE	0.002:0.005	NULL	NULL	-	no_errors
LOC388692	0	genome.wustl.edu	37	1	149291181	149291181	+	RNA	SNP	T	T	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	1	149291181	149291181	T	A	SNP	LOC388692	NR_027002.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.046	-	-	-	no_errors
LOC645181	0	genome.wustl.edu	37	5	84845686	84845686	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	5	84845686	84845686	C	G	SNP	LOC645181	XR_017382.3	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC653097	0	genome.wustl.edu	37	10	42772066	42772067	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	10	42772066	42772067	GC	-	DEL	LOC653097	XM_925973.4	human	genbank	58_37c	+1	model	frame_shift_del	c.136_137	p.A46fs	0.998:0.998	NULL	NULL	-	no_errors
LOC730268	0	genome.wustl.edu	37	2	88016150	88016150	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	2	88016150	88016150	G	A	SNP	LOC730268	XM_002342213.1	human	genbank	58_37c	+1	model	silent	c.720	p.L240	1.000	NULL	HMMPfam_PC_rep	-	no_errors
LRRC14B	0	genome.wustl.edu	37	5	195276	195276	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	5	195276	195276	C	T	SNP	LRRC14B	NM_001080478.1	human	genbank	58_37c	+1	provisional	silent	c.1353	p.Y451	0.001	NULL	superfamily_RNI-like	-	no_errors
LRRFIP1	0	genome.wustl.edu	37	2	238643948	238643948	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	2	238643948	238643948	G	A	SNP	LRRFIP1	NM_001137550.1	human	genbank	58_37c	+1	validated	missense	c.527	p.R176Q	0.189	HMMPfam_DUF2051	HMMPfam_DUF2051	-	no_errors
MCF2L2	0	genome.wustl.edu	37	3	183013089	183013089	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	3	183013089	183013089	C	G	SNP	MCF2L2	NM_015078.2	human	genbank	58_37c	-1	validated	silent	c.1674	p.S558	0.029	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00516,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like	-	no_errors
MDC1	0	genome.wustl.edu	37	6	30673431	30673431	+	Missense_Mutation	SNP	G	G	A	rs146447757	byFrequency	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	6	30673431	30673431	G	A	SNP	MDC1	NM_014641.2	human	genbank	58_37c	-1	reviewed	missense	c.3529	p.P1177S	0.677	NULL	HMMPfam_FHA,HMMSmart_SM00240,HMMPfam_BRCT,superfamily_BRCT domain,superfamily_SMAD/FHA domain	-	no_errors
METTL10	0	genome.wustl.edu	37	10	126453973	126453973	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	10	126453973	126453973	C	G	SNP	METTL10	ENST00000368836	human	ensembl	58_37c	-1	known	missense	c.604	p.E202Q	0.963	superfamily_SSF53335	HMMPfam_Methyltransf_11,superfamily_SSF53335	-	no_errors
MGAT5B	0	genome.wustl.edu	37	17	74902194	74902194	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	17	74902194	74902194	G	A	SNP	MGAT5B	NM_198955.1	human	genbank	58_37c	+1	validated	nonsense	c.983	p.W328*	1.000	NULL	NULL	-	no_errors
MMRN2	0	genome.wustl.edu	37	10	88704043	88704043	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	10	88704043	88704043	T	A	SNP	MMRN2	NM_024756.2	human	genbank	58_37c	-1	validated	missense	c.631	p.M211L	0.000	NULL	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_EMI	-	no_errors
MUC16	0	genome.wustl.edu	37	19	9069296	9069296	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	19	9069296	9069296	G	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	silent	c.18150	p.D6050	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195508476	195508476	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	3	195508476	195508476	G	C	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.9591	p.H3197Q	0.000	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MXD3	0	genome.wustl.edu	37	5	176734438	176734438	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	5	176734438	176734438	G	T	SNP	MXD3	ENST00000423571	human	ensembl	58_37c	-1	known	missense	c.849	p.H283Q	0.017	NULL	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
NAA11	0	genome.wustl.edu	37	4	80246366	80246366	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	4	80246366	80246366	T	C	SNP	NAA11	NM_032693.2	human	genbank	58_37c	-1	validated	silent	c.666	p.S222	0.650	NULL	HMMPfam_Acetyltransf_1,superfamily_Acyl_CoA_acyltransferase	-	no_errors
NBEAL2	0	genome.wustl.edu	37	3	47046220	47046240	+	Splice_Site	DEL	GTTCCCTGCCAACCCCCAGAG	GTTCCCTGCCAACCCCCAGAG	-	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	GTTCCCTGCCAACCCCCAGAG	GTTCCCTGCCAACCCCCAGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	3	47046220	47046240	GTTCCCTGCCAACCCCCAGAG	-	DEL	NBEAL2	ENST00000445550	human	ensembl	58_37c	+1	known	splice_site_del	c.135+1_21	e1+1	0.006:0.004:0.000:0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.001:0.000:0.000:0.000:0.000	-	-	-	no_start_codon
NCF1	0	genome.wustl.edu	37	7	74197317	74197317	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	7	74197317	74197317	G	A	SNP	NCF1	NM_000265.4	human	genbank	58_37c	+1	reviewed	missense	c.487	p.A163T	0.992	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_p47_phox_C	-	no_errors
NOTCH2NL	0	genome.wustl.edu	37	1	145281384	145281384	+	Nonsense_Mutation	SNP	G	G	A	rs143767861	byFrequency	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	1	145281384	145281384	G	A	SNP	NOTCH2NL	NM_203458.3	human	genbank	58_37c	+1	validated	nonsense	c.314	p.W105*	0.244	superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
NPM1	0	genome.wustl.edu	37	5	170827202	170827202	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	5	170827202	170827202	G	A	SNP	NPM1	NM_002520.6	human	genbank	58_37c	+1	reviewed	silent	c.570	p.A190	0.833	HMMPfam_Nucleoplasmin	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors
NRP2	0	genome.wustl.edu	37	2	206630294	206630294	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	2	206630294	206630294	G	T	SNP	NRP2	NM_201266.1	human	genbank	58_37c	+1	reviewed	nonsense	c.2404	p.E802*	1.000	HMMPfam_MAM,HMMSmart_SM00137	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_MAM,HMMSmart_SM00137,superfamily_Galactose-binding domain-like	-	no_errors
ODF1	0	genome.wustl.edu	37	8	103573011	103573037	+	In_Frame_Del	DEL	TGCAACCCCTGCAGCCCCTGCAACCCG	TGCAACCCCTGCAGCCCCTGCAACCCG	-	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	TGCAACCCCTGCAGCCCCTGCAACCCG	TGCAACCCCTGCAGCCCCTGCAACCCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	8	103573011	103573037	TGCAACCCCTGCAGCCCCTGCAACCCG	-	DEL	ODF1	NM_024410.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.652_678	p.NPCSPCNPC219in_frame_del	0.995:0.998:0.993:0.606:0.498:0.829:0.957:0.993:0.985:0.985:0.958:0.001:0.001:0.001:0.728:0.987:0.994:0.989:0.990:0.972:0.003:0.001:0.000:0.002:0.891:0.887:0.486	NULL	superfamily_HSP20_chap	-	no_errors
PIK3R1	0	genome.wustl.edu	37	5	67591118	67591138	+	In_Frame_Del	DEL	ATCCAGCTGAGAAAGACGAGA	ATCCAGCTGAGAAAGACGAGA	-	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	ATCCAGCTGAGAAAGACGAGA	ATCCAGCTGAGAAAGACGAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	5	67591118	67591138	ATCCAGCTGAGAAAGACGAGA	-	DEL	PIK3R1	NM_181523.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1711_1731	p.IQLRKTR571in_frame_del	1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.016:0.975:1.000:1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_GTPase activation domain GAP,superfamily_SH2 domain	-	no_errors
PLCZ1	0	genome.wustl.edu	37	12	18854541	18854552	+	In_Frame_Del	DEL	TCCTCCTCCTCC	TCCTCCTCCTCC	-	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	TCCTCCTCCTCC	TCCTCCTCCTCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	12	18854541	18854552	TCCTCCTCCTCC	-	DEL	PLCZ1	ENST00000447925	human	ensembl	58_37c	-1	known	in_frame_del	c.257_246	p.EEEE82in_frame_del	0.019:0.025:0.029:0.032:0.034:0.034:0.032:0.029:0.024:0.025:0.024:0.021	superfamily_PLC-like_Pdiesterase_TIM-brl	HMMPfam_C2,HMMSmart_C2,HMMPfam_PI-PLC-X,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors
PLOD2	0	genome.wustl.edu	37	3	145809641	145809641	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	3	145809641	145809641	C	T	SNP	PLOD2	NM_182943.2	human	genbank	58_37c	-1	reviewed	silent	c.825	p.Q275	1.000	NULL	PatternScan_LYS_HYDROXYLASE,HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc	-	no_errors
PRKCQ	0	genome.wustl.edu	37	10	6553110	6553110	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	10	6553110	6553110	G	A	SNP	PRKCQ	NM_006257.2	human	genbank	58_37c	-1	reviewed	silent	c.165	p.P55	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_Cysteine-rich domain	-	no_errors
PTEN	0	genome.wustl.edu	37	10	89720826	89720827	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	10	89720826	89720827	AC	-	DEL	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	frame_shift_del	c.977_978	p.D326fs	1.000:1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RPL26	0	genome.wustl.edu	37	17	8280943	8280943	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	17	8280943	8280943	C	T	SNP	RPL26	NM_000987.3	human	genbank	58_37c	-1	reviewed	missense	c.377	p.R126H	1.000	superfamily_Translation proteins SH3-like domain	HMMPfam_KOW,HMMSmart_SM00739,PatternScan_RIBOSOMAL_L24,superfamily_Translation proteins SH3-like domain	-	no_errors
RYR1	0	genome.wustl.edu	37	19	38959725	38959725	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	19	38959725	38959725	C	A	SNP	RYR1	NM_000540.2	human	genbank	58_37c	+1	reviewed	silent	c.3501	p.V1167	1.000	HMMPfam_SPRY,HMMSmart_SM00449	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SDHAP2	0	genome.wustl.edu	37	3	195399506	195399506	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	3	195399506	195399506	G	A	SNP	SDHAP2	NR_003265.3	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.994	-	-	-	pseudogene
SGK269	0	genome.wustl.edu	37	15	77474196	77474196	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	15	77474196	77474196	T	A	SNP	SGK269	NM_024776.2	human	genbank	58_37c	-1	validated	missense	c.73	p.S25C	1.000	NULL	PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
SNX17	0	genome.wustl.edu	37	2	27598788	27598788	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	2	27598788	27598788	T	A	SNP	SNX17	NM_014748.2	human	genbank	58_37c	+1	reviewed	missense	c.1054	p.Y352N	1.000	NULL	HMMPfam_PX,HMMSmart_PX,superfamily_PX,HMMPfam_FERM_M	-	no_errors
SPHKAP	0	genome.wustl.edu	37	2	228883047	228883047	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	2	228883047	228883047	C	G	SNP	SPHKAP	NM_001142644.1	human	genbank	58_37c	-1	validated	missense	c.2523	p.E841D	0.000	NULL	HMMPfam_AKAP_110	-	no_errors
SPTB	0	genome.wustl.edu	37	14	65239994	65239994	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	14	65239994	65239994	C	G	SNP	SPTB	NM_001024858.2	human	genbank	58_37c	-1	reviewed	missense	c.5122	p.E1708Q	1.000	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_PH,HMMSmart_PH,HMMPfam_Spectrin,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF50729	-	no_errors
SUN5	0	genome.wustl.edu	37	20	31572971	31572971	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	20	31572971	31572971	C	T	SNP	SUN5	NM_080675.3	human	genbank	58_37c	-1	validated	silent	c.918	p.K306	0.031	HMMPfam_Sad1_UNC	HMMPfam_Sad1_UNC	-	no_errors
SYNE1	0	genome.wustl.edu	37	6	152749432	152749432	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	6	152749432	152749432	C	G	SNP	SYNE1	NM_182961.2	human	genbank	58_37c	-1	reviewed	missense	c.4884	p.E1628D	0.012	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
SYNE1	0	genome.wustl.edu	37	6	152809633	152809633	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	6	152809633	152809633	T	G	SNP	SYNE1	NM_182961.2	human	genbank	58_37c	-1	reviewed	missense	c.945	p.E315D	1.000	NULL	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
TPRX1	0	genome.wustl.edu	37	19	48305639	48305650	+	In_Frame_Del	DEL	GGGCCTGGGATC	GGGCCTGGGATC	-	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	GGGCCTGGGATC	GGGCCTGGGATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	19	48305639	48305650	GGGCCTGGGATC	-	DEL	TPRX1	NM_198479.2	human	genbank	58_37c	-1	validated	in_frame_del	c.629_618	p.PGPI208in_frame_del	0.077:0.077:0.076:0.064:0.061:0.056:0.042:0.003:0.000:0.000:0.000:0.000	NULL	NULL	-	no_errors
TRPM1	0	genome.wustl.edu	37	15	31294084	31294084	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	15	31294084	31294084	T	C	SNP	TRPM1	NM_002420.4	human	genbank	58_37c	-1	reviewed	missense	c.4753	p.M1585V	0.001	NULL	HMMPfam_Ion_trans	-	no_errors
TTN	0	genome.wustl.edu	37	2	179477095	179477095	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	2	179477095	179477095	A	G	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	silent	c.42453	p.S14151	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
TWISTNB	0	genome.wustl.edu	37	7	19748611	19748611	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	7	19748611	19748611	C	T	SNP	TWISTNB	NM_001002926.1	human	genbank	58_37c	-1	validated	missense	c.29	p.R10Q	0.004	NULL	HMMPfam_RNA_pol_Rpb7_N	-	no_errors
UNC5B	0	genome.wustl.edu	37	10	73046627	73046627	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	10	73046627	73046627	G	T	SNP	UNC5B	NM_170744.3	human	genbank	58_37c	+1	validated	splice_site	c.733+1	e5+1	1.000	-	-	-	no_errors
WDR73	0	genome.wustl.edu	37	15	85186877	85186894	+	In_Frame_Del	DEL	CTTGGCTCCGTGTTCCAT	CTTGGCTCCGTGTTCCAT	-	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	CTTGGCTCCGTGTTCCAT	CTTGGCTCCGTGTTCCAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	15	85186877	85186894	CTTGGCTCCGTGTTCCAT	-	DEL	WDR73	NM_032856.2	human	genbank	58_37c	-1	validated	in_frame_del	c.961_944	p.DGTRSQ315in_frame_del	0.001:0.001:0.001:0.001:0.001:0.001:0.002:0.005:0.007:0.007:0.010:0.012:0.012:0.011:0.010:0.009:0.007:0.005	superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1	-	no_errors
XRCC5	0	genome.wustl.edu	37	2	217055015	217055015	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LL-01A-11D-A142-09	TCGA-E2-A1LL-11A-21D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	47312f61-5ef4-4f25-9320-8fbb4758790e	ed257922-f940-4fb3-9a92-fde82d130aef	2	217055015	217055015	G	A	SNP	XRCC5	NM_021141.3	human	genbank	58_37c	+1	reviewed	silent	c.1902	p.K634	1.000	HMMPfam_Ku_PK_bind,superfamily_Ku_PK_bind	HMMSmart_VWA,HMMPfam_Ku_C,HMMPfam_Ku_N,HMMPfam_Ku,HMMSmart_Ku78,HMMPfam_Ku_PK_bind,superfamily_Ku_PK_bind,superfamily_SPOC-like,superfamily_SSF53300	-	no_errors
