Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ATP10A	0	genome.wustl.edu	37	15	25966903	25966903	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	15	25966903	25966903	G	C	SNP	ATP10A	NM_024490.3	human	genbank	58_37c	-1	reviewed	missense	c.1264	p.Q422E	1.000	superfamily_SSF56784	HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660	-	no_errors
CCDC66	0	genome.wustl.edu	37	3	56591278	56591279	+	Frame_Shift_Ins	INS	-	-	GGGGTAAGCA	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	3	56591278	56591279	-	GGGGTAAGCA	INS	CCDC66	NM_001141947.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.8_9	p.D5fs	1.000:1.000	NULL	NULL	-	no_errors
CHST2	0	genome.wustl.edu	37	3	142840438	142840438	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	3	142840438	142840438	G	A	SNP	CHST2	NM_004267.3	human	genbank	58_37c	+1	validated	silent	c.780	p.S260	0.092	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CLIC3	0	genome.wustl.edu	37	9	139889217	139889217	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	9	139889217	139889217	C	T	SNP	CLIC3	NM_004669.2	human	genbank	58_37c	-1	reviewed	silent	c.627	p.A209	0.033	superfamily_GST_C_like	superfamily_GST_C_like,superfamily_Thiordxn-like_fd	-	no_errors
CTCF	0	genome.wustl.edu	37	16	67645934	67645934	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	16	67645934	67645934	C	G	SNP	CTCF	NM_006565.2	human	genbank	58_37c	+1	reviewed	missense	c.862	p.H288D	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
DNAH2	0	genome.wustl.edu	37	17	7708590	7708590	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	17	7708590	7708590	G	C	SNP	DNAH2	NM_020877.2	human	genbank	58_37c	+1	validated	missense	c.9321	p.K3107N	1.000	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	13030	13030	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	MT	13030	13030	T	C	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.694	p.W232R	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000210082	0	genome.wustl.edu	37	MT	2351	2351	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	MT	2351	2351	T	C	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000221917	0	genome.wustl.edu	37	9	69441043	69441043	+	Silent	SNP	C	C	T	rs71223554	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	9	69441043	69441043	C	T	SNP	ENSG00000221917	ENST00000333394	human	ensembl	58_37c	+1	known	silent	c.531	p.T177	0.061	NULL	NULL	-	no_errors
FBXL7	0	genome.wustl.edu	37	5	15928343	15928343	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	5	15928343	15928343	C	T	SNP	FBXL7	NM_012304.3	human	genbank	58_37c	+1	reviewed	missense	c.472	p.R158C	1.000	HMMPfam_F-box,superfamily_RNI-like	HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00367,superfamily_RNI-like	-	no_errors
GPR98	0	genome.wustl.edu	37	5	89948176	89948176	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	5	89948176	89948176	C	T	SNP	GPR98	NM_032119.3	human	genbank	58_37c	+1	reviewed	nonsense	c.3430	p.R1144*	0.999	NULL	HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
LOC388428	0	genome.wustl.edu	37	17	79152856	79152856	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	17	79152856	79152856	G	A	SNP	LOC388428	NR_027255.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
MAGEC3	0	genome.wustl.edu	37	X	140983249	140983249	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	X	140983249	140983249	G	A	SNP	MAGEC3	ENST00000448920	human	ensembl	58_37c	+1	known	silent	c.360	p.P120	0.000	NULL	NULL	-	no_errors
MARCH10	0	genome.wustl.edu	37	17	60865932	60865932	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	17	60865932	60865932	C	T	SNP	MARCH10	NM_001100875.1	human	genbank	58_37c	-1	validated	missense	c.119	p.R40K	0.539	NULL	HMMSmart_SM00744,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
MED19	0	genome.wustl.edu	37	11	57472466	57472467	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	11	57472466	57472467	-	C	INS	MED19	NM_153450.1	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.453_452	p.F152fs	0.999:1.000	HMMPfam_Med19	HMMPfam_Med19	-	no_errors
MUC21	0	genome.wustl.edu	37	6	30954439	30954439	+	Missense_Mutation	SNP	A	A	G	rs147266731	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	6	30954439	30954439	A	G	SNP	MUC21	NM_001010909.2	human	genbank	58_37c	+1	validated	missense	c.487	p.S163G	0.077	NULL	NULL	-	no_errors
NOTCH2	0	genome.wustl.edu	37	1	120458435	120458436	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	1	120458435	120458436	-	G	INS	NOTCH2	NM_024408.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.6910_6909	p.I2303fs	0.997:0.957	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_Notch,HMMSmart_NL,superfamily_Notch_region,HMMSmart_EGF_CA,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_NOD,HMMPfam_NODP,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
TBC1D4	0	genome.wustl.edu	37	13	75884201	75884201	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	13	75884201	75884201	C	T	SNP	TBC1D4	NM_014832.2	human	genbank	58_37c	-1	validated	missense	c.2470	p.E824K	0.832	NULL	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like	-	no_errors
