Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA3	0	genome.wustl.edu	37	16	2336775	2336775	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	16	2336775	2336775	G	A	SNP	ABCA3	NM_001089.2	human	genbank	58_37c	-1	reviewed	silent	c.3198	p.C1066	0.064	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCC3	0	genome.wustl.edu	37	17	48755286	48755286	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	17	48755286	48755286	C	G	SNP	ABCC3	NM_003786.3	human	genbank	58_37c	+1	reviewed	missense	c.3560	p.P1187R	0.999	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCC9	0	genome.wustl.edu	37	12	22086768	22086768	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	12	22086768	22086768	C	T	SNP	ABCC9	NM_005691.2	human	genbank	58_37c	-1	reviewed	missense	c.232	p.A78T	0.993	NULL	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
BCL9	0	genome.wustl.edu	37	1	147091300	147091300	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	1	147091300	147091300	C	T	SNP	BCL9	NM_004326.2	human	genbank	58_37c	+1	reviewed	missense	c.1339	p.P447S	0.977	NULL	NULL	-	no_errors
C11orf70	0	genome.wustl.edu	37	11	101951992	101951992	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	11	101951992	101951992	G	A	SNP	C11orf70	NM_032930.1	human	genbank	58_37c	+1	predicted	missense	c.541	p.V181I	0.941	NULL	NULL	-	no_errors
C19orf29	0	genome.wustl.edu	37	19	3619155	3619155	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	19	3619155	3619155	C	T	SNP	C19orf29	NM_001080543.1	human	genbank	58_37c	-1	validated	missense	c.970	p.V324M	1.000	HMMPfam_Cactin_mid	HMMPfam_Cactin_mid,HMMPfam_CactinC_cactus	-	no_errors
CMYA5	0	genome.wustl.edu	37	5	79035212	79035212	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	5	79035212	79035212	A	G	SNP	CMYA5	NM_153610.3	human	genbank	58_37c	+1	validated	missense	c.10624	p.I3542V	1.000	NULL	HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors
CSMD1	0	genome.wustl.edu	37	8	3081256	3081256	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	8	3081256	3081256	G	T	SNP	CSMD1	NM_033225.5	human	genbank	58_37c	-1	validated	missense	c.4482	p.F1494L	1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
CT47B1	0	genome.wustl.edu	37	X	120008797	120008823	+	In_Frame_Del	DEL	TCCTCTGTGGCCTCCTCTGTGAGCTTC	TCCTCTGTGGCCTCCTCTGTGAGCTTC	-	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	TCCTCTGTGGCCTCCTCTGTGAGCTTC	TCCTCTGTGGCCTCCTCTGTGAGCTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	X	120008797	120008823	TCCTCTGTGGCCTCCTCTGTGAGCTTC	-	DEL	CT47B1	NM_001145718.1	human	genbank	58_37c	-1	validated	in_frame_del	c.728_702	p.KLTEEATEE235in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.002	NULL	NULL	-	no_errors
CUBN	0	genome.wustl.edu	37	10	17024557	17024557	+	Missense_Mutation	SNP	G	G	A	rs146824506	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	10	17024557	17024557	G	A	SNP	CUBN	NM_001081.3	human	genbank	58_37c	-1	reviewed	missense	c.4621	p.R1541W	0.167	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
DEFB112	0	genome.wustl.edu	37	6	50011380	50011380	+	Missense_Mutation	SNP	C	C	T	rs146242544	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	6	50011380	50011380	C	T	SNP	DEFB112	NM_001037498.1	human	genbank	58_37c	-1	provisional	missense	c.250	p.V84M	0.000	NULL	NULL	-	no_errors
ELN	0	genome.wustl.edu	37	7	73474894	73474894	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	7	73474894	73474894	T	C	SNP	ELN	ENST00000358929	human	ensembl	58_37c	+1	known	missense	c.1915	p.S639P	0.000	NULL	PatternScan_ENDONUCLEASE_III_2,PatternScan_HEXAPEP_TRANSFERASES	-	no_errors
ENSG00000186453	0	genome.wustl.edu	37	2	24402127	24402128	+	Frame_Shift_Ins	INS	-	-	AA	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	2	24402127	24402128	-	AA	INS	ENSG00000186453	ENST00000425283	human	ensembl	58_37c	+1	known	frame_shift_ins	c.310_311	p.R104fs	0.887:0.932	NULL	NULL	-	no_errors
ENSG00000214870	0	genome.wustl.edu	37	7	26510039	26510039	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	7	26510039	26510039	G	A	SNP	ENSG00000214870	ENST00000418758	human	ensembl	58_37c	+1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_coding_region
ENSG00000249845	0	genome.wustl.edu	37	17	75558550	75558550	+	RNA	SNP	T	C	C	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	17	75558550	75558550	T	C	SNP	ENSG00000249845	ENST00000510484	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.271	-	-	-	no_errors
ERI2	0	genome.wustl.edu	37	16	20802184	20802184	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	16	20802184	20802184	T	G	SNP	ERI2	NM_080663.2	human	genbank	58_37c	-1	validated	missense	c.803	p.Q268P	0.018	NULL	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T	-	no_errors
FAM48B1	0	genome.wustl.edu	37	X	24382374	24382376	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	X	24382374	24382376	TGC	-	DEL	FAM48B1	NM_001136234.1	human	genbank	58_37c	+1	inferred	in_frame_del	c.1497_1499	p.A503in_frame_del	0.007:0.004:0.003	NULL	NULL	-	no_errors
FAT4	0	genome.wustl.edu	37	4	126372690	126372690	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	4	126372690	126372690	G	A	SNP	FAT4	NM_024582.4	human	genbank	58_37c	+1	validated	missense	c.10519	p.G3507R	1.000	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FKBP1AP1	0	genome.wustl.edu	37	19	58338244	58338251	+	RNA	DEL	TTTATTTA	TTTATTTA	-	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	TTTATTTA	TTTATTTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	19	58338244	58338251	TTTATTTA	-	DEL	FKBP1AP1	NR_024162.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.031:0.026:0.022:0.002:0.005:0.007:0.008:0.001	-	-	-	pseudogene
FREM2	0	genome.wustl.edu	37	13	39261493	39261493	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	13	39261493	39261493	C	G	SNP	FREM2	NM_207361.4	human	genbank	58_37c	+1	reviewed	silent	c.12	p.A4	0.000	NULL	HMMPfam_Calx-beta,HMMSmart_SM00237	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29625971	29625971	+	Missense_Mutation	SNP	C	C	A	rs145033899	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	20	29625971	29625971	C	A	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	missense	c.215	p.P72Q	1.000	superfamily_Actin_crosslink,HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
HIST1H3F	0	genome.wustl.edu	37	6	26250661	26250661	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	6	26250661	26250661	G	A	SNP	HIST1H3F	NM_021018.2	human	genbank	58_37c	-1	reviewed	missense	c.173	p.S58L	1.000	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00428,PatternScan_HISTONE_H3_1,PatternScan_HISTONE_H3_2,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
KCNS1	0	genome.wustl.edu	37	20	43723698	43723698	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	20	43723698	43723698	C	T	SNP	KCNS1	NM_002251.3	human	genbank	58_37c	-1	reviewed	missense	c.1394	p.R465Q	1.000	superfamily_Voltage-gated potassium channels	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels	-	no_errors
KRTAP4-6	0	genome.wustl.edu	37	17	39296499	39296499	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	17	39296499	39296499	G	A	SNP	KRTAP4-6	ENST00000345847	human	ensembl	58_37c	-1	known	missense	c.241	p.R81C	0.992	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LILRB1	0	genome.wustl.edu	37	19	55148088	55148088	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	19	55148088	55148088	G	A	SNP	LILRB1	NM_001081637.1	human	genbank	58_37c	+1	reviewed	silent	c.1797	p.R599	0.000	NULL	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
LOC100287759	0	genome.wustl.edu	37	9	66454940	66454940	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	9	66454940	66454940	G	C	SNP	LOC100287759	XM_002342919.1	human	genbank	58_37c	-1	model	missense	c.15	p.H5Q	0.134	NULL	NULL	-	no_errors
LOC339742	0	genome.wustl.edu	37	2	133106844	133106845	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	2	133106844	133106845	-	C	INS	LOC339742	XM_929883.3	human	genbank	58_37c	+1	model	frame_shift_ins	c.10_11	p.I4fs	0.001:0.001	NULL	NULL	-	no_errors
LOC729057	0	genome.wustl.edu	37	22	16123092	16123092	+	RNA	SNP	G	G	C	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	22	16123092	16123092	G	C	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LOC729057	0	genome.wustl.edu	37	22	16123793	16123793	+	RNA	SNP	G	G	A	rs11703326	byHapMap	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	22	16123793	16123793	G	A	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.007	-	-	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195505829	195505829	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	3	195505829	195505829	G	A	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.12238	p.P4080S	0.995	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195505841	195505841	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	3	195505841	195505841	C	T	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.12226	p.G4076S	0.956	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195507721	195507721	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	3	195507721	195507721	A	G	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.10346	p.V3449A	0.003	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195507851	195507851	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	3	195507851	195507851	C	T	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.10216	p.A3406T	0.011	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195509606	195509606	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	3	195509606	195509606	C	T	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.8461	p.D2821N	0.023	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195509655	195509655	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	3	195509655	195509655	G	T	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	silent	c.8412	p.T2804	0.135	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195510785	195510785	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	3	195510785	195510785	C	T	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.7666	p.G2556S	0.007	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195511788	195511788	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	3	195511788	195511788	G	A	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	silent	c.6663	p.H2221	0.026	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
OR5M8	0	genome.wustl.edu	37	11	56258125	56258125	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	11	56258125	56258125	C	A	SNP	OR5M8	NM_001005282.1	human	genbank	58_37c	-1	provisional	missense	c.722	p.G241V	0.094	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PCDHGC4	0	genome.wustl.edu	37	5	140866811	140866811	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	5	140866811	140866811	C	G	SNP	PCDHGC4	NM_018928.2	human	genbank	58_37c	+1	reviewed	missense	c.2071	p.L691V	0.980	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
POF1B	0	genome.wustl.edu	37	X	84634256	84634256	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	X	84634256	84634256	G	T	SNP	POF1B	NM_024921.3	human	genbank	58_37c	-1	reviewed	silent	c.204	p.P68	0.931	NULL	NULL	-	no_errors
POLE	0	genome.wustl.edu	37	12	133250274	133250274	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	12	133250274	133250274	A	G	SNP	POLE	NM_006231.2	human	genbank	58_37c	-1	validated	missense	c.1246	p.Y416H	1.000	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold	HMMPfam_DNA_pol_B_exo,HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_RNaseH_fold,HMMPfam_DUF1744,superfamily_SSF56672	-	no_errors
PPARGC1A	0	genome.wustl.edu	37	4	23815386	23815386	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	4	23815386	23815386	G	A	SNP	PPARGC1A	NM_013261.3	human	genbank	58_37c	-1	reviewed	nonsense	c.1720	p.R574*	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
PPFIA3	0	genome.wustl.edu	37	19	49632226	49632226	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	19	49632226	49632226	C	T	SNP	PPFIA3	NM_003660.2	human	genbank	58_37c	+1	reviewed	missense	c.464	p.A155V	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors
RAB18	0	genome.wustl.edu	37	10	27798830	27798830	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	10	27798830	27798830	C	G	SNP	RAB18	ENST00000423465	human	ensembl	58_37c	+1	known	nonsense	c.345	p.Y115*	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_start_codon:pseudogene
RTTN	0	genome.wustl.edu	37	18	67684825	67684825	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	18	67684825	67684825	T	C	SNP	RTTN	NM_173630.3	human	genbank	58_37c	-1	validated	missense	c.6239	p.K2080R	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
SLC29A3	0	genome.wustl.edu	37	10	73111493	73111496	+	Frame_Shift_Del	DEL	CTAC	CTAC	-	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	CTAC	CTAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	10	73111493	73111496	CTAC	-	DEL	SLC29A3	ENST00000373189	human	ensembl	58_37c	+1	known	frame_shift_del	c.558_561	p.I186fs	0.993:0.988:0.391:0.033	HMMPfam_Nucleoside_tran	HMMPfam_Nucleoside_tran	-	no_errors
SYTL4	0	genome.wustl.edu	37	X	99942108	99942108	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	X	99942108	99942108	G	A	SNP	SYTL4	NM_001129896.2	human	genbank	58_37c	-1	reviewed	silent	c.1140	p.C380	1.000	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RPH3A_effector,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
TBC1D8	0	genome.wustl.edu	37	2	101656749	101656749	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	2	101656749	101656749	G	A	SNP	TBC1D8	NM_001102426.1	human	genbank	58_37c	-1	validated	missense	c.926	p.T309M	1.000	HMMPfam_GRAM,HMMSmart_SM00568	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_EF-hand	-	no_errors
TTN	0	genome.wustl.edu	37	2	179611371	179611371	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	2	179611371	179611371	C	G	SNP	TTN	NM_133379.3	human	genbank	58_37c	-1	reviewed	missense	c.15756	p.E5252D	0.993	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726	PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726	-	no_errors
USH2A	0	genome.wustl.edu	37	1	216591941	216591941	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	1	216591941	216591941	C	T	SNP	USH2A	NM_206933.2	human	genbank	58_37c	-1	reviewed	missense	c.566	p.R189H	1.000	HMMSmart_SM00560,superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
WHSC1L1	0	genome.wustl.edu	37	8	38173482	38173482	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	8	38173482	38173482	G	C	SNP	WHSC1L1	NM_023034.1	human	genbank	58_37c	-1	reviewed	nonsense	c.1934	p.S645*	1.000	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00249,HMMSmart_SM00508,HMMSmart_SM00570,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT,superfamily_SET domain	-	no_errors
ZBTB48	0	genome.wustl.edu	37	1	6640763	6640763	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	1	6640763	6640763	G	T	SNP	ZBTB48	NM_005341.2	human	genbank	58_37c	+1	validated	missense	c.94	p.V32L	0.993	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB	HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF69	0	genome.wustl.edu	37	19	12016108	12016108	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	19	12016108	12016108	C	T	SNP	ZNF69	ENST00000429654	human	ensembl	58_37c	+1	known	missense	c.896	p.T299M	0.992	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF717	0	genome.wustl.edu	37	3	75788376	75788377	+	Frame_Shift_Ins	INS	-	-	TT	novel	unknown	TCGA-E9-A247-01A-11D-A167-09	TCGA-E9-A247-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7c184a2b-d857-444a-936c-43e38a196df9	9a71e51e-6adf-4b93-b968-3849fcc81504	3	75788376	75788377	-	TT	INS	ZNF717	NM_001128223.1	human	genbank	58_37c	-1	validated	frame_shift_ins	c.398_397	p.T133fs	0.000:0.000	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
