Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
DCHS2	0	genome.wustl.edu	37	4	155411721	155411721	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P1-01A-31D-A14G-09	TCGA-EW-A1P1-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	28a56927-bab8-4a8c-be11-f46e37ea34c1	81c42c7e-559d-4ce1-b046-64c9a1a5c3cc	4	155411721	155411721	G	A	SNP	DCHS2	NM_001142552.1	human	genbank	58_37c	-1	validated	missense	c.787	p.R263W	0.944	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
ENSG00000198804	0	genome.wustl.edu	37	MT	6093	6093	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P1-01A-31D-A14G-09	TCGA-EW-A1P1-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	28a56927-bab8-4a8c-be11-f46e37ea34c1	81c42c7e-559d-4ce1-b046-64c9a1a5c3cc	MT	6093	6093	G	A	SNP	ENSG00000198804	ENST00000361624	human	ensembl	58_37c	+1	known	missense	c.190	p.V64M	NULL	HMMPfam_COX1,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	mismatch_between_exon_seq_and_reference
ENSG00000248671	0	genome.wustl.edu	37	11	71506038	71506038	+	RNA	SNP	C	C	G	novel	unknown	TCGA-EW-A1P1-01A-31D-A14G-09	TCGA-EW-A1P1-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	28a56927-bab8-4a8c-be11-f46e37ea34c1	81c42c7e-559d-4ce1-b046-64c9a1a5c3cc	11	71506038	71506038	C	G	SNP	ENSG00000248671	ENST00000511954	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.799	-	-	-	no_errors
FAM47E	0	genome.wustl.edu	37	4	77199305	77199305	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1P1-01A-31D-A14G-09	TCGA-EW-A1P1-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	28a56927-bab8-4a8c-be11-f46e37ea34c1	81c42c7e-559d-4ce1-b046-64c9a1a5c3cc	4	77199305	77199305	C	G	SNP	FAM47E	NM_001136570.1	human	genbank	58_37c	+1	validated	missense	c.954	p.D318E	0.754	NULL	NULL	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29632643	29632643	+	Missense_Mutation	SNP	T	T	C	rs143379667	unknown	TCGA-EW-A1P1-01A-31D-A14G-09	TCGA-EW-A1P1-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	28a56927-bab8-4a8c-be11-f46e37ea34c1	81c42c7e-559d-4ce1-b046-64c9a1a5c3cc	20	29632643	29632643	T	C	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	missense	c.458	p.L153P	1.000	HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
HLA-DRB1	0	genome.wustl.edu	37	6	32549402	32549403	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-EW-A1P1-01A-31D-A14G-09	TCGA-EW-A1P1-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	28a56927-bab8-4a8c-be11-f46e37ea34c1	81c42c7e-559d-4ce1-b046-64c9a1a5c3cc	6	32549402	32549403	-	T	INS	HLA-DRB1	NM_002124.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.584_583	p.R195fs	0.942:0.950	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726	HMMPfam_MHC_II_beta,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726	-	no_errors
LOC100132247	0	genome.wustl.edu	37	16	22545897	22545897	+	Missense_Mutation	SNP	G	G	T	rs143579045	unknown	TCGA-EW-A1P1-01A-31D-A14G-09	TCGA-EW-A1P1-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	28a56927-bab8-4a8c-be11-f46e37ea34c1	81c42c7e-559d-4ce1-b046-64c9a1a5c3cc	16	22545897	22545897	G	T	SNP	LOC100132247	NM_001135865.1	human	genbank	58_37c	+1	validated	missense	c.1593	p.K531N	0.000	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
LOC100287927	0	genome.wustl.edu	37	22	23248549	23248549	+	Missense_Mutation	SNP	G	G	A	rs77502679	unknown	TCGA-EW-A1P1-01A-31D-A14G-09	TCGA-EW-A1P1-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	28a56927-bab8-4a8c-be11-f46e37ea34c1	81c42c7e-559d-4ce1-b046-64c9a1a5c3cc	22	23248549	23248549	G	A	SNP	LOC100287927	XM_002343770.1	human	genbank	58_37c	-1	model	missense	c.235	p.R79W	0.973	NULL	PatternScan_TUBULIN_B_AUTOREG	-	no_errors
LOC283685	0	genome.wustl.edu	37	15	23685232	23685232	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1P1-01A-31D-A14G-09	TCGA-EW-A1P1-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	28a56927-bab8-4a8c-be11-f46e37ea34c1	81c42c7e-559d-4ce1-b046-64c9a1a5c3cc	15	23685232	23685232	A	G	SNP	LOC283685	XM_002343322.1	human	genbank	58_37c	-1	model	missense	c.1945	p.W649R	0.005	NULL	NULL	-	no_errors
LOC642103	0	genome.wustl.edu	37	7	24405	24405	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1P1-01A-31D-A14G-09	TCGA-EW-A1P1-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	28a56927-bab8-4a8c-be11-f46e37ea34c1	81c42c7e-559d-4ce1-b046-64c9a1a5c3cc	7	24405	24405	C	T	SNP	LOC642103	XM_936233.4	human	genbank	58_37c	+1	model	nonsense	c.2413	p.R805*	0.052	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
LOC729057	0	genome.wustl.edu	37	22	16123793	16123793	+	RNA	SNP	G	G	A	rs11703326	byHapMap	TCGA-EW-A1P1-01A-31D-A14G-09	TCGA-EW-A1P1-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	28a56927-bab8-4a8c-be11-f46e37ea34c1	81c42c7e-559d-4ce1-b046-64c9a1a5c3cc	22	16123793	16123793	G	A	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.007	-	-	-	no_errors
NBPF10	0	genome.wustl.edu	37	1	145323656	145323656	+	Missense_Mutation	SNP	A	A	T	rs75252120	byFrequency	TCGA-EW-A1P1-01A-31D-A14G-09	TCGA-EW-A1P1-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	28a56927-bab8-4a8c-be11-f46e37ea34c1	81c42c7e-559d-4ce1-b046-64c9a1a5c3cc	1	145323656	145323656	A	T	SNP	NBPF10	NM_001039703.4	human	genbank	58_37c	+1	provisional	missense	c.3718	p.I1240F	0.007	NULL	HMMPfam_DUF1220	-	no_errors
NBPF9	0	genome.wustl.edu	37	1	144828548	144828548	+	Missense_Mutation	SNP	G	G	A	rs2938627	unknown	TCGA-EW-A1P1-01A-31D-A14G-09	TCGA-EW-A1P1-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	28a56927-bab8-4a8c-be11-f46e37ea34c1	81c42c7e-559d-4ce1-b046-64c9a1a5c3cc	1	144828548	144828548	G	A	SNP	NBPF9	ENST00000338347	human	ensembl	58_37c	+1	known	missense	c.1594	p.G532S	0.000	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_start_codon
