Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AFG3L1	0	genome.wustl.edu	37	16	90059193	90059193	+	RNA	SNP	G	G	A	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	16	90059193	90059193	G	A	SNP	AFG3L1	NR_003226.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.661	-	-	-	pseudogene
CCDC66	0	genome.wustl.edu	37	3	56591278	56591279	+	Frame_Shift_Ins	INS	-	-	GGGGTAAGCA	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	3	56591278	56591279	-	GGGGTAAGCA	INS	CCDC66	NM_001141947.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.8_9	p.D5fs	1.000:1.000	NULL	NULL	-	no_errors
CCNB3	0	genome.wustl.edu	37	X	50051515	50051515	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	X	50051515	50051515	G	A	SNP	CCNB3	NM_033031.2	human	genbank	58_37c	+1	reviewed	missense	c.346	p.E116K	0.000	NULL	HMMPfam_Cyclin_C,HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like	-	no_errors
CRNKL1	0	genome.wustl.edu	37	20	20023016	20023016	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	20	20023016	20023016	T	A	SNP	CRNKL1	NM_016652.4	human	genbank	58_37c	-1	reviewed	missense	c.1600	p.I534F	1.000	HMMPfam_HAT,HMMSmart_SM00386,superfamily_TPR-like	HMMPfam_HAT,HMMSmart_SM00386,superfamily_TPR-like	-	no_errors
CXorf57	0	genome.wustl.edu	37	X	105921404	105921404	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	X	105921404	105921404	C	T	SNP	CXorf57	NM_018015.5	human	genbank	58_37c	+1	validated	silent	c.2484	p.V828	0.207	NULL	superfamily_Nucleic acid-binding proteins	-	no_errors
DCHS2	0	genome.wustl.edu	37	4	155161799	155161799	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	4	155161799	155161799	C	T	SNP	DCHS2	NM_017639.3	human	genbank	58_37c	-1	validated	missense	c.5884	p.E1962K	0.096	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
DENND4A	0	genome.wustl.edu	37	15	65994128	65994128	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	15	65994128	65994128	T	C	SNP	DENND4A	NM_001144823.1	human	genbank	58_37c	-1	validated	missense	c.2531	p.N844S	1.000	HMMPfam_PPR	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_PPR,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800	-	no_errors
DNMT1	0	genome.wustl.edu	37	19	10259657	10259657	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	19	10259657	10259657	C	T	SNP	DNMT1	NM_001130823.1	human	genbank	58_37c	-1	reviewed	missense	c.2623	p.D875N	0.538	HMMPfam_BAH,HMMSmart_SM00439	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_DNA_methylase,HMMPfam_zf-CXXC,HMMPfam_DMAP_binding,PatternScan_C5_MTASE_1,PatternScan_C5_MTASE_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
EIF2B2	0	genome.wustl.edu	37	14	75470300	75470300	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	14	75470300	75470300	A	T	SNP	EIF2B2	NM_014239.3	human	genbank	58_37c	+1	reviewed	nonsense	c.331	p.K111*	1.000	HMMPfam_IF-2B,superfamily_NagB/RpiA/CoA transferase-like	HMMPfam_IF-2B,superfamily_NagB/RpiA/CoA transferase-like	-	no_errors
ENSG00000198938	0	genome.wustl.edu	37	MT	9847	9847	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	MT	9847	9847	T	C	SNP	ENSG00000198938	ENST00000362079	human	ensembl	58_37c	+1	known	missense	c.641	p.F214S	NULL	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000252887	0	genome.wustl.edu	37	16	89509765	89509766	+	RNA	INS	-	-	AC	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	16	89509765	89509766	-	AC	INS	ENSG00000252887	ENST00000517078	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.985:0.992	-	-	-	no_errors
ESYT1	0	genome.wustl.edu	37	12	56532266	56532266	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	12	56532266	56532266	C	T	SNP	ESYT1	NM_015292.2	human	genbank	58_37c	+1	validated	missense	c.2416	p.R806W	1.000	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
IGHG4	0	genome.wustl.edu	37	14	106091344	106091345	+	Frame_Shift_Ins	INS	-	-	GACCACAC	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	14	106091344	106091345	-	GACCACAC	INS	IGHG4	ENST00000390543	human	ensembl	58_37c	-1	known	frame_shift_ins	c.550_549	p.S183fs	0.618:0.613	HMMPfam_C1-set,superfamily_SSF48726	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726	-	no_start_codon
LILRA6	0	genome.wustl.edu	37	19	54745659	54745659	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	19	54745659	54745659	G	C	SNP	LILRA6	NM_024318.2	human	genbank	58_37c	-1	validated	missense	c.451	p.H151D	0.000	superfamily_SSF48726	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
LOC728819	0	genome.wustl.edu	37	2	43902728	43902728	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	2	43902728	43902728	G	T	SNP	LOC728819	NM_001101330.1	human	genbank	58_37c	-1	provisional	missense	c.734	p.T245K	1.000	NULL	NULL	-	no_errors
MRGPRX4	0	genome.wustl.edu	37	11	18195501	18195501	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	18195501	18195501	G	T	SNP	MRGPRX4	NM_054032.3	human	genbank	58_37c	+1	validated	missense	c.698	p.G233V	0.002	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
MTM1	0	genome.wustl.edu	37	X	149826404	149826404	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	X	149826404	149826404	G	C	SNP	MTM1	NM_000252.2	human	genbank	58_37c	+1	reviewed	missense	c.1164	p.L388F	0.998	superfamily_SSF52799	HMMPfam_GRAM,HMMSmart_GRAM,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF50729,superfamily_SSF52799	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1267311	1267311	+	Silent	SNP	A	A	C	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	1267311	1267311	A	C	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	silent	c.9210	p.T3070	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MYCBP2	0	genome.wustl.edu	37	13	77656125	77656125	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	13	77656125	77656125	G	C	SNP	MYCBP2	NM_015057.4	human	genbank	58_37c	-1	validated	missense	c.10926	p.C3642W	1.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00184,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_PHR,superfamily_E set domains,superfamily_RING/U-box	-	no_errors
MYO1A	0	genome.wustl.edu	37	12	57437051	57437051	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	12	57437051	57437051	C	A	SNP	MYO1A	NM_005379.2	human	genbank	58_37c	-1	reviewed	missense	c.984	p.K328N	0.988	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_TH1,superfamily_SSF52540	-	no_errors
NADSYN1	0	genome.wustl.edu	37	11	71212359	71212359	+	Silent	SNP	C	C	T	rs150859701	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	71212359	71212359	C	T	SNP	NADSYN1	NM_018161.4	human	genbank	58_37c	+1	validated	silent	c.2082	p.L694	0.028	NULL	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase,HMMPfam_NAD_synthase,superfamily_Adenine nucleotide alpha hydrolases-like	-	no_errors
NCRNA00183	0	genome.wustl.edu	37	X	73289354	73289354	+	RNA	SNP	G	G	A	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	X	73289354	73289354	G	A	SNP	NCRNA00183	NR_024582.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	1.000	-	-	-	no_errors
NME4	0	genome.wustl.edu	37	16	450140	450141	+	Frame_Shift_Ins	INS	-	-	AG	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	16	450140	450141	-	AG	INS	NME4	ENST00000420816	human	ensembl	58_37c	+1	known	frame_shift_ins	c.472_473	p.R158fs	0.000:0.000	HMMPfam_NDK,HMMSmart_SM00562	HMMPfam_NDK,HMMSmart_SM00562,superfamily_Nucleoside diphosphate kinases	-	no_errors
NOL8	0	genome.wustl.edu	37	9	95077794	95077794	+	Silent	SNP	T	T	C	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	9	95077794	95077794	T	C	SNP	NOL8	NM_017948.5	human	genbank	58_37c	-1	validated	silent	c.1113	p.R371	0.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
OR4S2	0	genome.wustl.edu	37	11	55419087	55419087	+	Silent	SNP	C	C	G	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	55419087	55419087	C	G	SNP	OR4S2	NM_001004059.2	human	genbank	58_37c	+1	validated	silent	c.708	p.S236	0.998	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR5AS1	0	genome.wustl.edu	37	11	55798211	55798211	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	55798211	55798211	C	A	SNP	OR5AS1	NM_001001921.1	human	genbank	58_37c	+1	provisional	missense	c.317	p.S106Y	0.001	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OSR2	0	genome.wustl.edu	37	8	99961319	99961319	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	8	99961319	99961319	C	G	SNP	OSR2	NM_001142462.1	human	genbank	58_37c	+1	validated	missense	c.139	p.Q47E	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PDIK1L	0	genome.wustl.edu	37	1	26448989	26448989	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	1	26448989	26448989	C	G	SNP	PDIK1L	NM_152835.3	human	genbank	58_37c	+1	validated	missense	c.947	p.P316R	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PDS5A	0	genome.wustl.edu	37	4	39865035	39865035	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	4	39865035	39865035	A	T	SNP	PDS5A	NM_001100399.1	human	genbank	58_37c	-1	reviewed	missense	c.2687	p.I896K	1.000	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
PLEKHG1	0	genome.wustl.edu	37	6	151151728	151151731	+	Frame_Shift_Del	DEL	AGGA	AGGA	-	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	AGGA	AGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	6	151151728	151151731	AGGA	-	DEL	PLEKHG1	NM_001029884.1	human	genbank	58_37c	+1	provisional	frame_shift_del	c.1481_1484	p.E495fs	0.999:0.720:0.870:0.852	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
PRCD	0	genome.wustl.edu	37	17	74538648	74538648	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	17	74538648	74538648	C	T	SNP	PRCD	NM_001077620.2	human	genbank	58_37c	+1	reviewed	silent	c.157	p.L53	0.998	NULL	NULL	-	no_errors
PRDM9	0	genome.wustl.edu	37	5	23527272	23527272	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	5	23527272	23527272	A	G	SNP	PRDM9	NM_020227.2	human	genbank	58_37c	+1	provisional	missense	c.2075	p.Y692C	0.522	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMSmart_SET,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,HMMPfam_SSXRD,superfamily_SSF57667,superfamily_SSF82199	-	no_errors
PTPRT	0	genome.wustl.edu	37	20	41100907	41100907	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	20	41100907	41100907	G	A	SNP	PTPRT	ENST00000454126	human	ensembl	58_37c	-1	known	missense	c.296	p.T99M	0.908	superfamily_Fibronectin type III	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
RBM47	0	genome.wustl.edu	37	4	40440362	40440362	+	Silent	SNP	G	G	C	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	4	40440362	40440362	G	C	SNP	RBM47	NM_001098634.1	human	genbank	58_37c	-1	validated	silent	c.549	p.V183	0.301	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RPTOR	0	genome.wustl.edu	37	17	78831617	78831617	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	17	78831617	78831617	G	T	SNP	RPTOR	NM_020761.2	human	genbank	58_37c	+1	reviewed	missense	c.1426	p.V476L	1.000	superfamily_ARM repeat	HMMPfam_HEAT,HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40	-	no_errors
RPUSD2	0	genome.wustl.edu	37	15	40861751	40861751	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	15	40861751	40861751	C	T	SNP	RPUSD2	NM_152260.1	human	genbank	58_37c	+1	provisional	missense	c.215	p.P72L	0.000	NULL	HMMPfam_PseudoU_synth_2,PatternScan_PSI_RLU,superfamily_PsdUridine_synth_cat_dom	-	no_errors
SEPT1	0	genome.wustl.edu	37	16	30393112	30393112	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	16	30393112	30393112	C	T	SNP	SEPT1	NM_052838.2	human	genbank	58_37c	-1	reviewed	missense	c.274	p.G92S	1.000	HMMPfam_Septin,superfamily_SSF52540	HMMPfam_Septin,superfamily_SSF52540	-	no_errors
SIRPA	0	genome.wustl.edu	37	20	1896052	1896054	+	In_Frame_Del	DEL	CGA	CGA	-	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	CGA	CGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	20	1896052	1896054	CGA	-	DEL	SIRPA	NM_001040022.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.387_389	p.D131in_frame_del	0.000:0.000:0.000	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	HMMPfam_C1-set,HMMSmart_IGc1,HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
SLC5A7	0	genome.wustl.edu	37	2	108604643	108604643	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	2	108604643	108604643	T	G	SNP	SLC5A7	NM_021815.2	human	genbank	58_37c	+1	provisional	missense	c.32	p.I11S	1.000	NULL	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2	-	no_errors
SLC6A5	0	genome.wustl.edu	37	11	20676318	20676318	+	Silent	SNP	C	C	G	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	20676318	20676318	C	G	SNP	SLC6A5	NM_004211.3	human	genbank	58_37c	+1	reviewed	silent	c.2298	p.R766	0.542	NULL	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors
TAS2R13	0	genome.wustl.edu	37	12	11061465	11061465	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	12	11061465	11061465	G	C	SNP	TAS2R13	NM_023920.2	human	genbank	58_37c	-1	reviewed	missense	c.433	p.L145V	0.000	HMMPfam_TAS2R,superfamily_SSF81321	HMMPfam_TAS2R,superfamily_SSF81321	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	17	7578212	7578212	G	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.637	p.R213*	0.893	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TSC1	0	genome.wustl.edu	37	9	135772703	135772703	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	9	135772703	135772703	T	A	SNP	TSC1	NM_000368.4	human	genbank	58_37c	-1	reviewed	missense	c.2843	p.Y948F	1.000	NULL	HMMPfam_Hamartin	-	no_errors
TTN	0	genome.wustl.edu	37	2	179478997	179478997	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	2	179478997	179478997	C	T	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.41423	p.R13808H	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
ZFP36L2	0	genome.wustl.edu	37	2	43452474	43452474	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	2	43452474	43452474	C	T	SNP	ZFP36L2	NM_006887.4	human	genbank	58_37c	-1	reviewed	missense	c.469	p.E157K	1.000	HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger	HMMPfam_zf-CCCH,HMMSmart_SM00356,HMMPfam_Tis11B_N,superfamily_CCCH zinc finger	-	no_errors
