Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
TP73-AS1	57212	genome.wustl.edu	37	1	3662744	3662744	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_207306.2	-1	predicted	p.A8	0.676	16	0%	14	57.1%	11	0%	-	-	-	NULL
RPL22	6146	ucsc.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000983.3	-1	reviewed	p.K15fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
KIF1B	23095	genome.wustl.edu	37	1	10364084	10364084	+	Silent	SNP	T	T	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_183416.3	+1	reviewed	p.P947	0.868	266	0%	269	29%	1	0%	-	-	-	NULL
PDPN	10630	genome.wustl.edu	37	1	13936893	13936893	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006474.4	+1	reviewed	p.S147	0.000	151	0%	143	36.4%	6	0%	-	-	-	HMMPfam_Podoplanin
UBR4	23352	genome.wustl.edu	37	1	19415318	19415318	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020765.2	-1	validated	p.R4789	0.998	67	0%	61	39.3%	66	0%	-	-	-	NULL
LIN28A	79727	genome.wustl.edu	37	1	26751952	26751952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024674.4	+1	validated	p.M129I	0.995	99	0%	111	39.6%	0	-	benign(0.003)	tolerated(0.19)	neutral(0.050)	superfamily_SSF57756
SESN2	83667	genome.wustl.edu	37	1	28599128	28599128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_031459.3	+1	reviewed	p.A192T	1.000	90	0%	83	34.9%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PA26
COL16A1	1307	genome.wustl.edu	37	1	32148535	32148535	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001856.3	-1	reviewed	p.P846	1.000	38	0%	41	26.8%	9	0%	-	-	-	HMMPfam_Collagen
KHDRBS1	10657	genome.wustl.edu	37	1	32502590	32502590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006559.1	+1	provisional	p.R284H	1.000	95	0%	90	30%	131	0.7%	possibly_damaging(0.905)	tolerated(0.11)	deleterious(0.631)	NULL
MACF1	23499	genome.wustl.edu	37	1	39783012	39783012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_012090.3	+1	reviewed	p.R1244C	1.000	39	0%	50	28%	1	0%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39806550	39806550	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_033044.2	+1	reviewed	p.N1942K	0.000	129	0%	137	38.7%	0	-	benign(0.017)	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
NFYC	4802	genome.wustl.edu	37	1	41235026	41235026	+	Splice_Site	SNP	A	A	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001142588.1	+1	reviewed	e9-2	1.000	178	0.6%	168	31%	1	0%	-	-	-	-
PTPRF	5792	genome.wustl.edu	37	1	44069858	44069858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002840.3	+1	reviewed	p.Q1012R	1.000	68	0%	66	36.4%	65	0%	benign(0.121)	tolerated(0.53)	neutral(0.017)	HMMSmart_SM00060
EIF2B3	8891	genome.wustl.edu	37	1	45363068	45363068	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020365.3	-1	reviewed	p.Y205*	1.000	32	0%	41	31.7%	23	0%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
ZSWIM5	57643	genome.wustl.edu	37	1	45484376	45484376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020883.1	-1	validated	p.T1103I	1.000	91	0%	107	47.7%	0	-	benign(0.253)	tolerated(0.47)	neutral(0.037)	NULL
CYP4X1	260293	genome.wustl.edu	37	1	47501593	47501593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_178033.1	+1	reviewed	p.C203Y	1.000	143	0%	142	34.5%	21	0%	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	HMMPfam_p450,superfamily_Cytochrome P450
HEATR8	374977	genome.wustl.edu	37	1	55134555	55134555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001039464.2	+1	validated	p.S445N	0.000	84	0%	107	29.9%	0	-	unknown(0)	-	-	NULL
ZNF326	284695	genome.wustl.edu	37	1	90484285	90484285	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_182976.2	+1	validated	p.K372	1.000	162	0%	224	41.1%	22	0%	-	-	-	HMMPfam_AKAP95
TGFBR3	7049	genome.wustl.edu	37	1	92181940	92181940	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003243.3	-1	validated	p.S573	0.888	156	0%	148	42.6%	8	0%	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_ZP
AGL	178	genome.wustl.edu	37	1	100382022	100382022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000028.2	+1	reviewed	p.L1439P	1.000	75	0%	80	40%	11	0%	possibly_damaging(0.654)	tolerated(0.08)	deleterious(0.530)	superfamily_Six-hairpin glycosidases,HMMPfam_GDE_C
SLC30A7	148867	genome.wustl.edu	37	1	101387395	101387397	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001144884.1	+1	validated	p.S281in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Cation_efflux
ST7L	54879	genome.wustl.edu	37	1	113119637	113119637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017744.4	-1	reviewed	p.A406T	1.000	85	0%	90	30%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ST7
PDE4DIP	9659	genome.wustl.edu	37	1	144882825	144882825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014644.4	-1	validated	p.E1065G	1.000	279	0%	433	12%	0	-	unknown(0)	deleterious(0)	-	NULL
POLR3C	10623	genome.wustl.edu	37	1	145594051	145594051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006468.6	-1	provisional	p.R504H	0.990	244	0%	581	20.5%	78	0%	benign(0.002)	tolerated(0.56)	neutral(0.006)	NULL
BNIPL	149428	genome.wustl.edu	37	1	151015491	151015491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_138278.3	+1	validated	p.G165C	0.071	160	0%	408	20.1%	2	0%	possibly_damaging(0.863)	deleterious(0.01)	deleterious(0.739)	NULL
TMOD4	29765	genome.wustl.edu	37	1	151143444	151143444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_013353.2	-1	validated	p.K274N	1.000	57	0%	126	24.6%	3	0%	benign(0.143)	deleterious(0.01)	neutral(0.418)	HMMPfam_Tropomodulin,superfamily_RNI-like
HRNR	388697	genome.wustl.edu	37	1	152193086	152193086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001009931.1	-1	validated	p.S340Y	0.082	126	0%	150	28.7%	0	-	unknown(0)	-	-	NULL
SPRR2B	6701	genome.wustl.edu	37	1	153043128	153043128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001017418.1	-1	provisional	p.C63F	0.914	217	0%	585	21.2%	0	-	unknown(0)	-	-	NULL
DENND4B	9909	genome.wustl.edu	37	1	153905226	153905226	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014856.2	-1	validated	p.A1217	1.000	57	0%	110	23.6%	12	0%	-	-	-	NULL
CHRNB2	1141	genome.wustl.edu	37	1	154548278	154548278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000748.2	+1	reviewed	p.R460H	1.000	90	0%	158	22.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
ADAM15	8751	genome.wustl.edu	37	1	155025154	155025154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000447332	+1	known	p.L39P	0.000	12	0%	23	34.8%	27	0%	-	-	-	NULL
DPM3	54344	genome.wustl.edu	37	1	155112671	155112671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018973.3	-1	reviewed	p.S46P	0.964	34	0%	80	21.2%	762	0%	possibly_damaging(0.923)	tolerated(0.05)	deleterious(0.718)	HMMPfam_DPM3
FAM189B	10712	genome.wustl.edu	37	1	155217691	155217691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006589.2	-1	validated	p.C630Y	1.000	27	0%	30	13.3%	80	0%	possibly_damaging(0.9)	deleterious(0)	deleterious(0.801)	NULL
SCAMP3	10067	genome.wustl.edu	37	1	155226149	155226149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005698.2	-1	reviewed	p.A320V	1.000	128	0%	181	17.7%	268	0.3%	possibly_damaging(0.598)	deleterious(0.02)	deleterious(0.590)	NULL
ASH1L	55870	genome.wustl.edu	37	1	155340628	155340628	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018489.2	-1	reviewed	p.L2160R	1.000	109	0%	273	19.8%	6	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
MSTO2P	100129405	genome.wustl.edu	37	1	155716718	155716718	+	RNA	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NR_024117.1	+1	provisional	NULL	0.000	146	0%	219	47.9%	1	0%	benign(0.05)	tolerated(0.19)	neutral(0.053)	-
BCAN	63827	genome.wustl.edu	37	1	156626771	156626771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_021948.3	+1	validated	p.A698T	0.181	37	0%	73	27.4%	0	-	probably_damaging(0.955)	tolerated(0.39)	neutral(0.415)	HMMSmart_SM00034,superfamily_C-type lectin-like
IFI16	3428	genome.wustl.edu	37	1	158988089	158988089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005531.2	+1	reviewed	p.V207A	0.022	119	0%	287	21.6%	33	0%	benign(0.197)	tolerated(0.08)	neutral(0.319)	HMMPfam_HIN
OR10J1	26476	genome.wustl.edu	37	1	159410218	159410218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_012351.2	+1	validated	p.V224I	0.551	213	0%	356	22.2%	0	-	benign(0.069)	tolerated(1)	neutral(0.004)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
APCS	325	genome.wustl.edu	37	1	159558038	159558038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001639.3	+1	reviewed	p.Y71C	0.927	237	0%	381	18.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pentaxin,HMMSmart_PTX,superfamily_ConA_like_lec_gl
SLAMF9	89886	genome.wustl.edu	37	1	159923923	159923923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_033438.3	-1	reviewed	p.C2Y	0.000	17	0%	40	32.5%	0	-	benign(0.007)	-	-	NULL
SLAMF1	6504	genome.wustl.edu	37	1	160604638	160604638	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003037.2	-1	validated	p.N155	0.010	162	0%	305	29.5%	1	0%	-	-	-	NULL
ATF6	22926	genome.wustl.edu	37	1	161751789	161751789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_007348.2	+1	validated	p.V83F	1.000	97	0%	138	17.4%	20	0%	benign(0.035)	tolerated(0.23)	neutral(0.044)	NULL
DCAF6	55827	genome.wustl.edu	37	1	168032981	168032981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018442.2	+1	validated	p.R737H	1.000	64	0%	135	15.6%	196	0.5%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_WD40,superfamily_WD40_like
MYOC	4653	genome.wustl.edu	37	1	171605766	171605766	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000261.1	-1	reviewed	p.R272*	0.999	135	0%	203	23.2%	3	0%	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
METTL13	51603	genome.wustl.edu	37	1	171753067	171753067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015935.4	+1	validated	p.S114L	0.023	80	0%	144	20.1%	55	0%	benign(0.174)	tolerated(0.08)	neutral(0.316)	HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
RC3H1	149041	genome.wustl.edu	37	1	173952773	173952773	+	Silent	SNP	A	A	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_172071.2	-1	validated	p.T125	1.000	253	0%	443	18.1%	0	-	-	-	-	NULL
TOR1AIP2	163590	genome.wustl.edu	37	1	179815460	179815460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_145034.3	-1	validated	p.A387T	1.000	79	0%	184	15.8%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LAP1C
KIAA1614	57710	genome.wustl.edu	37	1	180905066	180905066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020950.1	+1	validated	p.Q674R	0.000	63	0%	120	38.3%	1	0%	benign(0.082)	tolerated(0.57)	neutral(0.012)	NULL
GLUL	2752	genome.wustl.edu	37	1	182354539	182354539	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001033044.2	-1	reviewed	p.C252	1.000	134	0%	205	24.4%	387	0%	-	-	-	HMMPfam_Gln-synt_C,PatternScan_GLNA_ATP,superfamily_Glutamine synthetase/guanido kinase
SMG7	9887	genome.wustl.edu	37	1	183513566	183513566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_173156.2	+1	validated	p.A641T	1.000	263	0%	566	22.3%	30	0%	benign(0.062)	tolerated(1)	neutral(0.004)	NULL
HMCN1	83872	genome.wustl.edu	37	1	186038889	186038889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_031935.2	+1	reviewed	p.H2658Q	0.999	43	0%	107	21.5%	0	-	probably_damaging(0.983)	tolerated(0.39)	neutral(0.445)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TROVE2	6738	genome.wustl.edu	37	1	193051778	193051778	+	Silent	SNP	T	T	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004600.5	+1	validated	p.T468	0.998	65	0%	153	22.2%	13	0%	-	-	-	NULL
F13B	2165	genome.wustl.edu	37	1	197030114	197030114	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001994.2	-1	reviewed	p.A181	0.025	113	0%	239	11.3%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
IPO9	55705	genome.wustl.edu	37	1	201827582	201827582	+	Missense_Mutation	SNP	C	C	T	rs189962204	by1000genomes	TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018085.4	+1	validated	p.A410V	1.000	119	0%	344	14.5%	8	0%	benign(0)	tolerated(0.44)	neutral(0.013)	superfamily_ARM repeat
GPR37L1	9283	genome.wustl.edu	37	1	202096931	202096931	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004767.3	+1	validated	p.V231	1.000	40	0%	108	43.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SYT2	127833	genome.wustl.edu	37	1	202569530	202569530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001136504.1	-1	validated	p.L292M	1.000	96	0%	185	20.5%	0	-	benign(0.186)	tolerated(0.17)	neutral(0.076)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
LAX1	54900	genome.wustl.edu	37	1	203739994	203739994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017773.3	+1	validated	p.A43V	0.000	137	0%	352	23.3%	0	-	benign(0.153)	tolerated(0.62)	neutral(0.018)	NULL
PLEKHA6	22874	genome.wustl.edu	37	1	204197228	204197228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014935.2	-1	validated	p.R1005M	1.000	28	0%	42	16.7%	11	0%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	NULL
NFASC	23114	genome.wustl.edu	37	1	204955130	204955130	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015090.3	+1	reviewed	p.G889	0.986	20	0%	71	26.8%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CNTN2	6900	genome.wustl.edu	37	1	205042319	205042319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005076.2	+1	reviewed	p.G990R	1.000	74	0%	86	58.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_FN3,superfamily_FN_III-like
NUCKS1	64710	genome.wustl.edu	37	1	205688741	205688741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_022731.3	-1	validated	p.S149L	1.000	72	0%	196	20.9%	386	0%	benign(0.021)	deleterious(0)	neutral(0.446)	NULL
PM20D1	148811	genome.wustl.edu	37	1	205819082	205819082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152491.4	-1	validated	p.P40H	1.000	76	0%	102	17.6%	0	-	possibly_damaging(0.719)	tolerated(0.17)	neutral(0.320)	NULL
SLC26A9	115019	genome.wustl.edu	37	1	205896350	205896350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_134325.2	-1	reviewed	p.P428T	1.000	85	0%	153	18.3%	0	-	benign(0.01)	tolerated(0.36)	neutral(0.021)	HMMPfam_Sulfate_transp
MAPKAPK2	9261	genome.wustl.edu	37	1	206905953	206905953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032960.2	+1	reviewed	p.V365I	1.000	79	0%	89	10.1%	132	0%	probably_damaging(0.969)	tolerated(0.14)	deleterious(0.661)	superfamily_Protein kinase-like (PK-like)
LAMB3	3914	genome.wustl.edu	37	1	209799271	209799271	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000228.2	-1	reviewed	p.Q566	1.000	26	0%	31	35.5%	11	0%	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,superfamily_SSF57196
KCNH1	3756	genome.wustl.edu	37	1	210857425	210857425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_172362.2	-1	reviewed	p.R723Q	1.000	47	0%	72	27.8%	0	-	benign(0.301)	tolerated(0.27)	neutral(0.127)	NULL
USH2A	7399	genome.wustl.edu	37	1	215953200	215953200	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_206933.2	-1	reviewed	p.Q3642*	1.000	119	0%	179	21.2%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216258046	216258046	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_206933.2	-1	reviewed	p.G1721*	0.999	293	0%	377	14.3%	0	-	-	-	-	superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases
RAB3GAP2	25782	genome.wustl.edu	37	1	220357484	220357484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_012414.3	-1	reviewed	p.G631E	0.999	96	0%	185	15.1%	5	0%	benign(0.108)	tolerated(0.2)	neutral(0.058)	NULL
MIA3	375056	genome.wustl.edu	37	1	222825568	222825568	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_198551.2	+1	validated	e13-2	1.000	173	0%	314	19.4%	0	-	-	-	-	-
SUSD4	55061	genome.wustl.edu	37	1	223438060	223438060	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017982.3	-1	validated	p.P212	0.120	103	0%	111	25.2%	8	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
NVL	4931	genome.wustl.edu	37	1	224463138	224463138	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000469968	-1	known	p.C544*	1.000	183	0%	527	20.3%	54	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
LBR	3930	genome.wustl.edu	37	1	225598067	225598067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002296.2	-1	reviewed	p.A414T	0.000	179	0%	307	19.9%	45	0%	benign(0.009)	tolerated(0.54)	neutral(0.008)	HMMPfam_ERG4_ERG24
ADCK3	56997	genome.wustl.edu	37	1	227174247	227174247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020247.4	+1	reviewed	p.E585K	0.997	52	0%	84	13.1%	71	0%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
CDC42BPA	8476	genome.wustl.edu	37	1	227216756	227216756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003607.3	-1	reviewed	p.R1310L	1.000	112	0%	195	22.1%	14	0%	possibly_damaging(0.505)	tolerated(0.38)	neutral(0.186)	HMMPfam_CNH,HMMSmart_CNH
OBSCN	84033	genome.wustl.edu	37	1	228509259	228509259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001098623.1	+1	reviewed	p.D4906G	0.996	27	0%	37	21.6%	2	0%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
RHOU	58480	genome.wustl.edu	37	1	228879202	228879202	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_021205.4	+1	reviewed	p.D164	0.914	210	0%	391	21.7%	24	0%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
HEATR1	55127	genome.wustl.edu	37	1	236732307	236732307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018072.4	-1	validated	p.A1356T	1.000	32	0%	63	23.8%	22	0%	benign(0.107)	tolerated(0.69)	neutral(0.011)	superfamily_ARM-type_fold
RYR2	6262	genome.wustl.edu	37	1	237758840	237758840	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001035.2	+1	reviewed	p.S1493	1.000	79	0%	180	24.4%	0	-	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
ZP4	57829	genome.wustl.edu	37	1	238051656	238051656	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_021186.2	-1	reviewed	e4+2	0.979	130	0%	262	14.5%	0	-	-	-	-	-
CHRM3	1131	genome.wustl.edu	37	1	240072078	240072078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000740.2	+1	reviewed	p.V443I	0.001	63	0%	75	25.3%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF496	84838	genome.wustl.edu	37	1	247464091	247464091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032752.1	-1	provisional	p.E498D	0.001	35	0%	42	21.4%	16	0%	benign(0.354)	tolerated(0.41)	neutral(0.127)	NULL
OR2G3	81469	genome.wustl.edu	37	1	247769146	247769146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001001914.1	+1	provisional	p.R87G	0.002	497	0%	1112	12%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T33	391195	genome.wustl.edu	37	1	248436682	248436682	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001004695.1	-1	provisional	p.S145	0.001	212	0%	456	13.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TPO	7173	genome.wustl.edu	37	2	1507851	1507851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000547.5	+1	reviewed	p.D840Y	0.995	31	0%	44	38.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_EGF/Laminin
RSAD2	91543	genome.wustl.edu	37	2	7018173	7018173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_080657.4	+1	validated	p.R81H	1.000	59	0%	79	40.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_Elp3,HMMPfam_Radical_SAM,superfamily_SSF102114
WDR35	57539	genome.wustl.edu	37	2	20146303	20146303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001006657.1	-1	reviewed	p.Y529C	1.000	171	0%	206	37.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
HADHA	3030	genome.wustl.edu	37	2	26461844	26461844	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000182.4	-1	reviewed	p.K46N	1.000	115	0%	145	35.2%	27	0%	benign(0.01)	tolerated(0.48)	neutral(0.011)	superfamily_ClpP/crotonase
KCNK3	3777	genome.wustl.edu	37	2	26950546	26950546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002246.2	+1	reviewed	p.A99T	1.000	110	0%	113	34.5%	0	-	possibly_damaging(0.521)	tolerated(0.1)	neutral(0.462)	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
CAD	790	genome.wustl.edu	37	2	27446589	27446589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004341.3	+1	reviewed	p.I323T	1.000	271	0%	328	36.6%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_GATase,superfamily_SSF52317
GCKR	2646	genome.wustl.edu	37	2	27722316	27722316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001486.3	+1	reviewed	p.S183Y	0.998	158	0%	185	36.2%	0	-	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	superfamily_SIS domain
CLIP4	79745	genome.wustl.edu	37	2	29356615	29356615	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024692.4	+1	validated	p.L154	1.000	79	0%	106	37.7%	4	0%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
YPEL5	51646	genome.wustl.edu	37	2	30381650	30381650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001127399.1	+1	validated	p.R103C	1.000	101	0%	108	33.3%	82	0%	benign(0.233)	deleterious(0)	neutral(0.468)	HMMPfam_Yippee
SOS1	6654	genome.wustl.edu	37	2	39249914	39249914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005633.3	-1	reviewed	p.R552M	1.000	114	0%	122	34.4%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43924457	43924457	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_172069.3	+1	validated	p.S217*	0.875	114	0%	150	36.7%	0	-	-	-	-	NULL
TSPYL6	388951	genome.wustl.edu	37	2	54482094	54482094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001003937.2	-1	validated	p.V399M	0.199	86	0%	114	41.2%	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	NULL
EHBP1	23301	genome.wustl.edu	37	2	63206352	63206353	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015252.3	+1	reviewed	p.R868fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ACTR2	10097	genome.wustl.edu	37	2	65495807	65495807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001005386.2	+1	reviewed	p.R380Q	1.000	117	0%	108	34.3%	164	0%	possibly_damaging(0.524)	tolerated(0.05)	deleterious(0.522)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
NAGK	55577	genome.wustl.edu	37	2	71297902	71297902	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017567.4	+1	validated	p.I49N	1.000	47	0%	25	60%	54	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BcrAD_BadFG,superfamily_SSF53067
LOXL3	84695	genome.wustl.edu	37	2	74763921	74763921	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032603.2	-1	reviewed	p.P276fs	0.994	-	-	-	-	-	-	-	-	-	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor
ZNF2	7549	genome.wustl.edu	37	2	95847667	95847667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000453539	+1	known	p.T378I	0.984	85	0%	95	38.9%	7	0%	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	superfamily_C2H2 and C2HC zinc fingers
STARD7	56910	genome.wustl.edu	37	2	96861103	96861103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020151.3	-1	validated	p.G159C	0.971	19	0%	28	35.7%	45	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
SNRNP200	23020	genome.wustl.edu	37	2	96952140	96952140	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014014.3	-1	reviewed	p.L1304	1.000	142	0%	80	38.8%	34	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ST6GAL2	84620	genome.wustl.edu	37	2	107460245	107460245	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001142351.1	-1	validated	p.G63	0.006	35	0%	26	38.5%	0	-	-	-	-	NULL
RGPD4	285190	genome.wustl.edu	37	2	108475703	108475703	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_182588.2	+1	validated	p.S470	0.999	190	0%	275	12.7%	0	-	-	-	-	NULL
CBWD2	150472	genome.wustl.edu	37	2	114251404	114251404	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_172003.3	+1	validated	e12+2	0.995	348	0%	503	29%	0	-	-	-	-	-
RALB	5899	genome.wustl.edu	37	2	121047253	121047253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002881.2	+1	reviewed	p.E141K	1.000	107	0%	77	44.2%	22	0%	benign(0.025)	tolerated(0.16)	neutral(0.060)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF5C	3800	genome.wustl.edu	37	2	149837904	149837904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000435030	+1	known	p.I466M	0.997	43	0%	48	41.7%	5	0%	benign(0.002)	tolerated(0.19)	neutral(0.050)	NULL
CD302	9936	genome.wustl.edu	37	2	160639964	160639964	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014880.4	-1	validated	p.T28	0.948	86	0%	111	39.6%	1	0%	-	-	-	HMMSmart_SM00034,superfamily_C-type lectin-like
PLA2R1	22925	genome.wustl.edu	37	2	160901422	160901422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_007366.3	-1	validated	p.R119M	0.420	187	0%	228	39%	1	0%	possibly_damaging(0.843)	deleterious(0.04)	deleterious(0.672)	HMMSmart_SM00458,superfamily_Ricin B-like lectins
SLC4A10	57282	genome.wustl.edu	37	2	162696351	162696351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_022058.3	+1	reviewed	p.E110D	1.000	91	0%	125	38.4%	0	-	possibly_damaging(0.913)	tolerated(0.56)	neutral(0.371)	NULL
SCN3A	6328	genome.wustl.edu	37	2	165947538	165947538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006922.3	-1	reviewed	p.A1709T	1.000	331	0%	349	39%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN3A	6328	genome.wustl.edu	37	2	165986560	165986560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006922.3	-1	reviewed	p.R938C	1.000	273	0%	424	35.1%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN1A	6323	genome.wustl.edu	37	2	166897760	166897760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006920.4	-1	reviewed	p.V788A	1.000	100	0%	101	34.7%	0	-	benign(0.019)	tolerated(0.35)	neutral(0.022)	superfamily_SSF81324
XIRP2	129446	genome.wustl.edu	37	2	168102906	168102906	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152381.4	+1	validated	p.S1668	0.344	258	0.4%	308	31.2%	0	-	-	-	-	NULL
XIRP2	129446	genome.wustl.edu	37	2	168107010	168107010	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152381.4	+1	validated	p.S3036	0.686	374	0.3%	393	36.9%	0	-	-	-	-	NULL
AGPS	8540	genome.wustl.edu	37	2	178301748	178301748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003659.3	+1	reviewed	p.M201I	1.000	124	0%	148	43.2%	22	0%	benign(0.007)	tolerated(0.06)	neutral(0.323)	superfamily_FAD-binding domain
TTC30B	150737	genome.wustl.edu	37	2	178416599	178416599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152517.2	-1	validated	p.M298T	1.000	195	0%	155	35.5%	3	0%	benign(0.084)	deleterious(0.03)	neutral(0.370)	superfamily_TPR-like
TTN	7273	genome.wustl.edu	37	2	179427416	179427416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000356127	-1	known	p.T25245A	0.999	89	0%	81	43.2%	0	-	benign(0.074)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179456801	179456801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000356127	-1	known	p.G17374S	1.000	32	0%	28	39.3%	0	-	benign(0.29)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179457772	179457772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000356127	-1	known	p.T17122A	1.000	123	0%	131	37.4%	0	-	benign(0.014)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179495573	179495573	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000356127	-1	known	p.H12136	1.000	98	0%	96	25%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179597807	179597807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000356127	-1	known	p.V4122M	0.918	67	0%	107	20.6%	0	-	unknown(0)	-	-	HMMSmart_SM00409,HMMPfam_I-set
MFSD6	54842	genome.wustl.edu	37	2	191301376	191301376	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017694.3	+1	validated	p.N207	0.000	199	0%	136	46.3%	2	0%	-	-	-	superfamily_MFS_gen_substrate_transporter
DNAH7	56171	genome.wustl.edu	37	2	196759889	196759889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018897.2	-1	validated	p.L1569F	0.995	56	0%	104	32.7%	0	-	benign(0.036)	tolerated(0.47)	neutral(0.013)	superfamily_P-loop containing nucleoside triphosphate hydrolases
AOX1	316	genome.wustl.edu	37	2	201533417	201533417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001159.3	+1	reviewed	p.T1230I	1.000	149	0%	143	22.4%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ald_Xan_dh_C2,superfamily_Molybdenum cofactor-binding domain
ALS2	57679	genome.wustl.edu	37	2	202625743	202625743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020919.3	-1	reviewed	p.M325T	0.000	146	0%	146	41.8%	9	0%	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
INO80D	54891	genome.wustl.edu	37	2	206920963	206920963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017759.4	-1	validated	p.T308I	1.000	85	0%	60	43.3%	0	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
PTH2R	5746	genome.wustl.edu	37	2	209358019	209358019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005048.2	+1	reviewed	p.R430W	0.002	78	0%	72	23.6%	8	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_SSF81321
FN1	2335	genome.wustl.edu	37	2	216226339	216226339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_212482.1	-1	reviewed	p.C2458Y	1.000	112	0%	134	32.1%	234	0%	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
TNS1	7145	genome.wustl.edu	37	2	218678534	218678534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_022648.4	-1	reviewed	p.A1475T	0.018	60	0%	50	48%	5	0%	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
AAMP	14	genome.wustl.edu	37	2	219134288	219134288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000420660	-1	known	p.A12T	0.027	47	0%	27	25.9%	0	-	unknown(0)	tolerated(1)	-	NULL
PLCD4	84812	genome.wustl.edu	37	2	219495468	219495468	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000458239	+1	known	p.A34T	0.092	24	0%	45	28.9%	0	-	-	-	-	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
CHPF	79586	genome.wustl.edu	37	2	220404971	220404971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024536.5	-1	validated	p.L488F	1.000	27	0%	25	40%	150	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_CHGN
IRS1	3667	genome.wustl.edu	37	2	227660448	227660448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005544.2	-1	reviewed	p.D1003N	0.998	52	0%	39	38.5%	5	0%	probably_damaging(0.954)	deleterious(0.02)	deleterious(0.780)	NULL
COL6A3	1293	genome.wustl.edu	37	2	238253449	238253449	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004369.3	-1	reviewed	p.A2404	1.000	150	0%	121	38.8%	17	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ANO7	50636	genome.wustl.edu	37	2	242149746	242149746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001001891.3	+1	validated	p.L520M	0.997	26	0%	15	46.7%	0	-	benign(0.37)	tolerated(0.19)	neutral(0.167)	NULL
CNTN6	27255	genome.wustl.edu	37	3	1369183	1369183	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014461.2	+1	reviewed	p.L376	0.987	60	0%	57	50.9%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CNTN6	27255	genome.wustl.edu	37	3	1371480	1371480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014461.2	+1	reviewed	p.D409Y	0.990	95	0%	108	30.6%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_I-set,superfamily_SSF48726
LHFPL4	375323	genome.wustl.edu	37	3	9547651	9547651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_198560.2	-1	reviewed	p.D215Y	1.000	91	0%	96	45.8%	0	-	benign(0.359)	deleterious(0.02)	deleterious(0.497)	NULL
C3orf20	84077	genome.wustl.edu	37	3	14724684	14724684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032137.4	+1	validated	p.A155D	0.995	34	0%	27	48.1%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
GALNTL2	117248	genome.wustl.edu	37	3	16250090	16250090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_054110.4	+1	validated	p.G331V	1.000	157	0%	152	40.8%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Glycos_transf_2,superfamily_SSF53448
C3orf35	339883	genome.wustl.edu	37	3	37458873	37458873	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_178339.2	+1	validated	p.D39A	1.000	150	0%	194	27.8%	1	0%	possibly_damaging(0.745)	-	-	NULL
TTC21A	199223	genome.wustl.edu	37	3	39178787	39178787	+	Missense_Mutation	SNP	G	G	T	rs188468178	by1000genomes	TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001105513.2	+1	validated	p.R1128L	0.999	37	0%	32	31.2%	7	0%	possibly_damaging(0.653)	deleterious(0.01)	deleterious(0.635)	superfamily_TPR-like
SNRK	54861	genome.wustl.edu	37	3	43381889	43381889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001100594.1	+1	validated	p.N281S	1.000	141	0%	187	35.3%	4	0%	benign(0.002)	tolerated(0.83)	neutral(0.001)	superfamily_Protein kinase-like (PK-like)
LTF	4057	genome.wustl.edu	37	3	46482911	46482911	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002343.2	-1	reviewed	p.T573	0.000	88	0%	107	19.6%	128	0%	-	-	-	HMMPfam_Transferrin,HMMSmart_TR_FER,superfamily_SSF53850
KIF9	64147	genome.wustl.edu	37	3	47284634	47284634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001134878.1	-1	validated	p.G539V	0.001	75	0%	62	38.7%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
QARS	5859	genome.wustl.edu	37	3	49135655	49135655	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005051.1	-1	reviewed	p.V707	0.995	125	0%	144	28.5%	526	0.3%	-	-	-	superfamily_Ribosomal_L25rel,HMMPfam_tRNA-synt_1c_C
DAG1	1605	genome.wustl.edu	37	3	49568961	49568961	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004393.4	+1	reviewed	p.V339	0.994	126	0%	140	38.6%	33	0%	-	-	-	HMMPfam_DAG1
DOCK3	1795	genome.wustl.edu	37	3	51267006	51267006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004947.3	+1	validated	p.R628Q	1.000	38	0%	52	34.6%	0	-	probably_damaging(0.986)	tolerated(0.36)	neutral(0.455)	NULL
DOCK3	1795	genome.wustl.edu	37	3	51392410	51392410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004947.3	+1	validated	p.H1402R	1.000	49	0%	59	40.7%	0	-	probably_damaging(0.999)	tolerated(0.69)	deleterious(0.492)	NULL
RRP9	9136	genome.wustl.edu	37	3	51967609	51967609	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004704.3	-1	provisional	p.G447	0.990	107	0%	140	38.6%	41	0%	-	-	-	superfamily_WD40 repeat-like
CRYBG3	131544	genome.wustl.edu	37	3	97607189	97607189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_153605.2	+1	validated	p.L484F	1.000	79	0%	41	26.8%	1	0%	benign(0.359)	deleterious(0)	deleterious(0.558)	HMMSmart_SM00247,superfamily_gamma-Crystallin-like
MORC1	27136	genome.wustl.edu	37	3	108818274	108818274	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014429.3	-1	reviewed	p.T118	1.000	133	0.8%	124	33.9%	0	-	-	-	-	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
DPPA2	151871	genome.wustl.edu	37	3	109028085	109028085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_138815.3	-1	validated	p.I92V	0.000	190	0%	245	39.2%	0	-	benign(0.003)	tolerated(0.91)	-	HMMSmart_SAP
TMPRSS7	344805	genome.wustl.edu	37	3	111766814	111766814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001042575.2	+1	validated	p.R194I	1.000	88	0%	99	32.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
KIAA2018	205717	genome.wustl.edu	37	3	113374508	113374508	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001009899.2	-1	validated	p.F2007	1.000	77	0%	67	31.3%	3	0%	-	-	-	NULL
GAP43	2596	genome.wustl.edu	37	3	115395037	115395037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001130064.1	+1	reviewed	p.D106N	1.000	125	0%	135	49.6%	0	-	possibly_damaging(0.887)	deleterious(0.01)	deleterious(0.752)	HMMPfam_Neuromodulin
KALRN	8997	genome.wustl.edu	37	3	123946904	123946904	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000354186	+1	known	p.S23L	1.000	223	0%	243	33.7%	0	-	-	-	-	HMMSmart_SM00516,superfamily_CRAL/TRIO domain
SLC12A8	84561	genome.wustl.edu	37	3	124896594	124896594	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024628.5	-1	validated	p.L205	1.000	73	0%	80	42.5%	16	0%	-	-	-	HMMPfam_AA_permease
RHO	6010	genome.wustl.edu	37	3	129247606	129247606	+	Silent	SNP	C	C	T	rs138142023	by1000genomes	TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000539.3	+1	reviewed	p.Y10	0.982	74	0%	82	54.9%	0	-	-	-	-	HMMPfam_Rhodopsin_N,superfamily_SSF81321
TMCC1	23023	genome.wustl.edu	37	3	129547008	129547008	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001017395.3	-1	validated	p.Q72*	1.000	123	0%	94	50%	0	-	-	-	-	NULL
PIK3R4	30849	genome.wustl.edu	37	3	130403135	130403135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014602.2	-1	validated	p.R1189H	1.000	203	0%	195	35.9%	36	2.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_WD40,superfamily_WD40_like
AMOTL2	51421	genome.wustl.edu	37	3	134077521	134077521	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_016201.2	-1	reviewed	p.P715	0.328	38	0%	38	42.1%	7	0%	-	-	-	NULL
DZIP1L	199221	genome.wustl.edu	37	3	137811252	137811252	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_173543.2	-1	validated	p.V281	0.901	130	0%	165	27.3%	0	-	-	-	-	NULL
COPB2	9276	genome.wustl.edu	37	3	139080051	139080051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004766.2	-1	validated	p.Q694H	1.000	319	0.3%	282	40.4%	200	0%	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_Coatomer_WDAD
ATR	545	genome.wustl.edu	37	3	142176554	142176554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001184.3	-1	reviewed	p.T2516I	1.000	83	0%	126	37.3%	42	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
U2SURP	23350	genome.wustl.edu	37	3	142740359	142740359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001080415.1	+1	provisional	p.S272R	1.000	89	1.1%	105	36.2%	24	0%	benign(0.081)	deleterious(0.02)	neutral(0.389)	superfamily_RNA-binding domain RBD
MME	4311	genome.wustl.edu	37	3	154857980	154857980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000902.3	+1	reviewed	p.A286T	1.000	86	0%	101	32.7%	1	0%	possibly_damaging(0.772)	tolerated(0.12)	deleterious(0.547)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
IQCJ	654502	genome.wustl.edu	37	3	158980437	158980437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001042705.1	+1	provisional	p.V86I	0.979	61	0%	58	34.5%	0	-	benign(0.278)	deleterious(0)	deleterious(0.475)	NULL
GOLIM4	27333	genome.wustl.edu	37	3	167747641	167747642	+	In_Frame_Ins	INS	-	-	CTG	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014498.3	-1	reviewed	p.453in_frame_insQ	0.997:1.000	-	-	-	-	-	-	-	-	-	NULL
MECOM	2122	genome.wustl.edu	37	3	168834483	168834483	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000494292	-1	known	p.R393G	1.000	137	0%	152	37.5%	8	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
YEATS2	55689	genome.wustl.edu	37	3	183521940	183521940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018023.4	+1	validated	p.I1250V	1.000	73	0%	111	34.2%	14	0%	possibly_damaging(0.54)	tolerated(0.15)	neutral(0.424)	NULL
AP2M1	1173	genome.wustl.edu	37	3	183898017	183898017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004068.3	+1	reviewed	p.T134M	1.000	32	0%	28	35.7%	168	0.5%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_SNARE-like
IGF2BP2	10644	genome.wustl.edu	37	3	185367217	185367217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006548.4	-1	reviewed	p.R523W	1.000	54	1.9%	72	41.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
TP63	8626	genome.wustl.edu	37	3	189586386	189586386	+	Missense_Mutation	SNP	G	G	T	rs113993967	byCluster	TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003722.4	+1	reviewed	p.R337L	1.000	154	0%	128	42.2%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_p53-like transcription factors,HMMPfam_P53
WHSC1	7468	genome.wustl.edu	37	4	1932444	1932444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001042424.2	+1	reviewed	p.R501H	1.000	24	0%	54	35.2%	25	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
KIAA0232	9778	genome.wustl.edu	37	4	6865499	6865499	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001100590.1	+1	validated	p.K1130N	1.000	173	0%	183	44.8%	3	0%	benign(0.411)	deleterious(0.01)	deleterious(0.538)	NULL
DRD5	1816	genome.wustl.edu	37	4	9784399	9784399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000798.4	+1	reviewed	p.Y249C	1.000	58	0%	70	57.1%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KLB	152831	genome.wustl.edu	37	4	39439476	39439476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_175737.3	+1	validated	p.E489G	1.000	199	0%	273	36.6%	0	-	probably_damaging(0.963)	deleterious(0.04)	deleterious(0.754)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
ATP10D	57205	genome.wustl.edu	37	4	47548742	47548742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020453.3	+1	validated	p.S500G	0.398	308	0%	357	26.1%	2	0%	benign(0.002)	tolerated(0.32)	neutral(0.024)	superfamily_HAD-like
KIT	3815	genome.wustl.edu	37	4	55598144	55598144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000222.2	+1	reviewed	p.A781T	1.000	106	0%	101	38.6%	0	-	possibly_damaging(0.724)	tolerated(0.14)	deleterious(0.512)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
BMP2K	55589	genome.wustl.edu	37	4	79792164	79792166	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	CAC	CAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_198892.1	+1	reviewed	p.H490in_frame_del	0.893:0.884:0.883	-	-	-	-	-	-	-	-	-	NULL
FGF5	2250	genome.wustl.edu	37	4	81188029	81188029	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004464.3	+1	reviewed	p.S17	1.000	56	0%	48	31.2%	0	-	-	-	-	NULL
MAPK10	5602	genome.wustl.edu	37	4	87080462	87080462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_138982.2	-1	reviewed	p.Q75H	1.000	162	0%	143	40.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TRPC3	7222	genome.wustl.edu	37	4	122853513	122853513	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001130698.1	-1	validated	p.L300	1.000	53	0%	63	49.2%	0	-	-	-	-	HMMPfam_TRP_2
INTU	27152	genome.wustl.edu	37	4	128621177	128621177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015693.3	+1	validated	p.M488V	0.998	147	0%	160	39.4%	2	0%	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
PCDH18	54510	genome.wustl.edu	37	4	138451839	138451839	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_019035.3	-1	reviewed	p.S468	1.000	264	0%	246	43.1%	0	-	-	-	-	superfamily_Cadherin-like
NDUFC1	4717	genome.wustl.edu	37	4	140213765	140213765	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002494.3	-1	reviewed	e3-2	0.994	21	0%	25	44%	0	-	-	-	-	-
SETD7	80854	genome.wustl.edu	37	4	140432984	140432984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_030648.2	-1	validated	p.R312C	1.000	84	0%	59	33.9%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
LRBA	987	genome.wustl.edu	37	4	151186914	151186914	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006726.2	-1	validated	p.D2851G	1.000	39	0%	94	38.3%	48	2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_WD40 repeat-like
PDGFC	56034	genome.wustl.edu	37	4	157684306	157684306	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_016205.1	-1	reviewed	p.T325S	0.999	119	0%	112	33.9%	27	0%	benign(0.032)	tolerated(0.35)	neutral(0.022)	HMMPfam_PDGF,HMMSmart_SM00141,superfamily_Cystine-knot cytokines
CEP44	80817	genome.wustl.edu	37	4	175220280	175220280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001145314.1	+1	validated	p.T3I	0.999	62	0%	92	37%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ODZ3	55714	genome.wustl.edu	37	4	183714193	183714193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001080477.1	+1	provisional	p.A2123V	1.000	148	0%	117	29.9%	0	-	probably_damaging(0.989)	tolerated(0.13)	deleterious(0.692)	NULL
ING2	3622	genome.wustl.edu	37	4	184431867	184431867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001564.2	+1	validated	p.P202L	1.000	111	0%	130	38.5%	56	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ZFP42	132625	genome.wustl.edu	37	4	188924186	188924186	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_174900.3	+1	validated	p.C75	0.446	139	0%	131	45.8%	0	-	-	-	-	NULL
TRIML1	339976	genome.wustl.edu	37	4	189060949	189060949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_178556.3	+1	provisional	p.R79S	0.817	27	0%	79	41.8%	0	-	possibly_damaging(0.542)	deleterious(0.01)	deleterious(0.589)	superfamily_SSF57850
KIAA0947	23379	genome.wustl.edu	37	5	5464894	5464894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015325.1	+1	validated	p.D1816G	0.074	45	0%	54	38.9%	9	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
SPEF2	79925	genome.wustl.edu	37	5	35641736	35641736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024867.3	+1	validated	p.R122H	0.894	170	0%	164	38.4%	3	0%	possibly_damaging(0.683)	tolerated(0.08)	deleterious(0.543)	HMMPfam_DUF1042
DHX29	54505	genome.wustl.edu	37	5	54579080	54579080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_019030.2	-1	validated	p.A639V	1.000	175	0%	147	23.1%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
MAST4	375449	genome.wustl.edu	37	5	66459210	66459210	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000443808	+1	known	p.T458A	0.772	67	0%	59	47.5%	4	0%	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591125	67591125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_181523.1	+1	reviewed	p.L573P	1.000	150	0%	192	35.4%	89	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POLK	51426	genome.wustl.edu	37	5	74892527	74892527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_016218.2	+1	validated	p.N670S	0.000	166	0%	190	40%	15	0%	unknown(0)	deleterious(0.01)	-	NULL
ARSB	411	genome.wustl.edu	37	5	78264838	78264838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000046.3	-1	reviewed	p.T164A	0.998	170	0%	147	40.8%	3	0%	benign(0.042)	deleterious(0.02)	neutral(0.386)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
SSBP2	23635	genome.wustl.edu	37	5	80736414	80736414	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_012446.2	-1	validated	p.L297	1.000	71	0%	58	41.4%	15	0%	-	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82808110	82808110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004385.4	+1	reviewed	p.A313T	0.985	34	0%	26	34.6%	0	-	probably_damaging(0.99)	tolerated(0.31)	deleterious(0.469)	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,superfamily_C-type lectin-like
RASA1	5921	genome.wustl.edu	37	5	86672237	86672237	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002890.1	+1	reviewed	p.L680*	1.000	95	0%	83	41%	12	0%	-	-	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CCNH	902	genome.wustl.edu	37	5	86695218	86695218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001239.2	-1	reviewed	p.V289I	0.010	245	0%	303	42.6%	65	0%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
GPR98	84059	genome.wustl.edu	37	5	90007115	90007115	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000509621	+1	known	p.G572D	0.813	116	0%	104	27.9%	1	0%	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
DMXL1	1657	genome.wustl.edu	37	5	118506466	118506466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005509.4	+1	validated	p.D1994N	0.049	191	0%	167	34.1%	1	0%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
SEC24A	10802	genome.wustl.edu	37	5	134050742	134050742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_021982.1	+1	validated	p.R919H	1.000	48	0%	76	46.1%	12	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24
KDM3B	51780	genome.wustl.edu	37	5	137727019	137727019	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_016604.3	+1	validated	p.S566	0.998	84	0%	85	20%	4	0%	-	-	-	NULL
IK	3550	genome.wustl.edu	37	5	140032593	140032594	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006083.3	+1	reviewed	p.R93fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RED_N
PCDHA1	56147	genome.wustl.edu	37	5	140166269	140166269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018900.2	+1	reviewed	p.V132I	0.000	90	0%	98	25.5%	0	-	benign(0.002)	tolerated(0.48)	neutral(0.011)	superfamily_Cadherin-like
PCDHA4	56144	genome.wustl.edu	37	5	140188703	140188703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018907.2	+1	reviewed	p.R644H	0.013	41	0%	61	57.4%	3	0%	possibly_damaging(0.485)	deleterious(0.03)	deleterious(0.525)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140209211	140209211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018909.2	+1	reviewed	p.A512V	1.000	34	0%	39	25.6%	0	-	benign(0.022)	deleterious(0)	neutral(0.446)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140215247	140215247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018910.2	+1	reviewed	p.A427T	0.992	57	0%	88	21.6%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB6	56130	genome.wustl.edu	37	5	140531450	140531450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018939.2	+1	reviewed	p.A538T	0.437	137	0%	145	42.8%	0	-	possibly_damaging(0.738)	tolerated(0.14)	deleterious(0.520)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB18	54660	genome.wustl.edu	37	5	140615768	140615768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000274705	+1	known	p.R495C	0.932	49	0%	80	40%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB15	56121	genome.wustl.edu	37	5	140625975	140625975	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018935.2	+1	reviewed	p.I277L	0.011	66	0%	107	36.4%	0	-	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGA3	56112	genome.wustl.edu	37	5	140724196	140724196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018916.3	+1	reviewed	p.A199V	0.008	136	0%	155	39.4%	0	-	benign(0.02)	tolerated(0.09)	neutral(0.297)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140744033	140744033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018918.2	+1	reviewed	p.G46C	1.000	30	0%	46	21.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
ARAP3	64411	genome.wustl.edu	37	5	141039479	141039479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_022481.5	-1	reviewed	p.A1045V	1.000	22	0%	24	29.2%	7	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
DCTN4	51164	genome.wustl.edu	37	5	150099305	150099305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001135643.1	-1	validated	p.M319I	1.000	61	0%	82	22%	14	0%	benign(0.001)	tolerated(0.23)	neutral(0.042)	HMMPfam_Dynactin_p62
ZNF300	91975	genome.wustl.edu	37	5	150276199	150276199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_052860.2	-1	reviewed	p.P201L	0.000	210	0%	253	40.7%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
G3BP1	10146	genome.wustl.edu	37	5	151175128	151175128	+	Silent	SNP	A	A	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005754.2	+1	reviewed	p.A177	0.947	187	0%	171	36.8%	48	0%	-	-	-	NULL
GALNT10	55568	genome.wustl.edu	37	5	153792522	153792522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_198321.3	+1	reviewed	p.G487D	0.977	33	0%	28	35.7%	20	0%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
LARP1	23367	genome.wustl.edu	37	5	154174839	154174839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015315.3	+1	validated	p.R369L	1.000	88	0%	111	36.9%	22	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_La,HMMSmart_LA,superfamily_SSF46785
ATP10B	23120	genome.wustl.edu	37	5	160071242	160071242	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_025153.2	-1	validated	p.P257	0.974	65	0%	73	35.6%	0	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A
CCNG1	900	genome.wustl.edu	37	5	162868936	162868936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004060.3	+1	reviewed	p.A188V	1.000	104	0%	108	27.8%	62	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
UBTD2	92181	genome.wustl.edu	37	5	171661180	171661180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152277.2	-1	validated	p.D85Y	1.000	152	0%	216	41.2%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1191	57179	genome.wustl.edu	37	5	175775296	175775296	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001079685.1	-1	validated	p.T175S	1.000	56	1.8%	95	36.8%	94	0%	unknown(0)	-	-	NULL
NOP16	51491	genome.wustl.edu	37	5	175811341	175811341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_016391.4	-1	provisional	p.D143G	1.000	53	0%	54	38.9%	88	0%	possibly_damaging(0.861)	tolerated(0.06)	deleterious(0.655)	HMMPfam_Nop16
GPRIN1	114787	genome.wustl.edu	37	5	176025140	176025140	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_052899.2	-1	validated	p.Q566*	0.000	123	0%	24	16.7%	1	0%	-	-	-	NULL
FGFR4	2264	genome.wustl.edu	37	5	176520134	176520134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000377207	+1	known	p.R579S	0.027	97	0%	66	37.9%	1	0%	benign(0.018)	deleterious(0.01)	neutral(0.406)	NULL
NSD1	64324	genome.wustl.edu	37	5	176684064	176684064	+	Silent	SNP	T	T	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_022455.4	+1	reviewed	p.T1626	0.847	97	0%	134	37.3%	13	0%	-	-	-	HMMSmart_SM00249
NSD1	64324	genome.wustl.edu	37	5	176721760	176721760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_022455.4	+1	reviewed	p.R2464H	1.000	108	0%	126	37.3%	18	0%	benign(0.002)	tolerated(0.26)	neutral(0.034)	NULL
SLC34A1	6569	genome.wustl.edu	37	5	176815170	176815170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003052.4	+1	reviewed	p.F274L	1.000	47	0%	51	51%	0	-	benign(0.021)	tolerated(0.64)	neutral(0.004)	NULL
ZNF354C	30832	genome.wustl.edu	37	5	178506265	178506265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014594.1	+1	provisional	p.E278K	1.000	208	0%	282	29.4%	1	0%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DSP	1832	genome.wustl.edu	37	6	7584543	7584543	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004415.2	+1	reviewed	p.L2350V	0.966	122	0%	171	33.9%	21	4.7%	possibly_damaging(0.943)	tolerated(0.09)	deleterious(0.684)	HMMSmart_SM00250,superfamily_Plakin repeat
GMPR	2766	genome.wustl.edu	37	6	16290830	16290830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006877.3	+1	reviewed	p.A279T	0.990	142	0%	105	24.8%	338	0%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_IMPDH,superfamily_SSF51412
HIST1H1A	3024	genome.wustl.edu	37	6	26017723	26017723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005325.3	-1	reviewed	p.N80D	1.000	58	0%	60	35%	0	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_Linker_histone,HMMSmart_H15,superfamily_SSF46785
OR2B2	81697	genome.wustl.edu	37	6	27879862	27879862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_033057.2	-1	validated	p.P79Q	1.000	178	0%	251	43.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NKAPL	222698	genome.wustl.edu	37	6	28227385	28227385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001007531.1	+1	provisional	p.R79H	0.002	55	0%	54	38.9%	0	-	unknown(0)	tolerated(0.06)	-	NULL
DHX16	8449	genome.wustl.edu	37	6	30621111	30621111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003587.4	-1	reviewed	p.A1012T	1.000	53	0%	75	37.3%	59	0%	benign(0.249)	deleterious(0)	deleterious(0.470)	HMMPfam_DUF1605
DDR1	780	genome.wustl.edu	37	6	30864799	30864799	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000514434	+1	known	p.V118M	1.000	122	0%	124	33.9%	69	0%	-	-	-	HMMPfam_Pkinase_Tyr
RXRB	6257	genome.wustl.edu	37	6	33162787	33162787	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_021976.3	-1	reviewed	p.L463	0.996	20	0%	23	43.5%	35	0%	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
DNAH8	1769	genome.wustl.edu	37	6	38893829	38893829	+	Splice_Site	SNP	A	A	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001371.2	+1	validated	e70-2	0.969	287	0%	338	37.3%	0	-	-	-	-	-
PRICKLE4	29964	genome.wustl.edu	37	6	41751310	41751310	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_013397.5	+1	validated	p.L33	0.001	79	0%	81	38.3%	3	0%	-	-	-	NULL
TTBK1	84630	genome.wustl.edu	37	6	43251506	43251506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032538.1	+1	validated	p.A1010T	0.567	75	0%	55	43.6%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
ABCC10	89845	genome.wustl.edu	37	6	43410795	43410795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_033450.2	+1	reviewed	p.M744V	0.022	40	0%	30	50%	9	0%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
SLC29A1	2030	genome.wustl.edu	37	6	44197372	44197372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001078174.1	+1	reviewed	p.T53I	0.001	65	0%	57	40.4%	21	0%	benign(0.029)	tolerated(0.05)	neutral(0.347)	NULL
DST	667	genome.wustl.edu	37	6	56471184	56471184	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000370769	-1	known	p.G2537*	0.000	76	0%	83	44.6%	0	-	-	-	-	NULL
FAM46A	55603	genome.wustl.edu	37	6	82459640	82459640	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017633.2	-1	validated	p.V367	1.000	107	0%	128	39.8%	0	-	-	-	-	HMMPfam_DUF1693
ZNF292	23036	genome.wustl.edu	37	6	87943239	87943239	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015021.1	+1	validated	p.I245	0.779	137	0%	148	32.4%	5	0%	-	-	-	NULL
ZNF292	23036	genome.wustl.edu	37	6	87970334	87970334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015021.1	+1	validated	p.K2329N	0.387	175	0%	177	37.3%	16	0%	benign(0.2)	tolerated(0.1)	neutral(0.305)	NULL
ASCC3	10973	genome.wustl.edu	37	6	101315843	101315843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006828.2	-1	validated	p.R11C	1.000	52	0%	57	35.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRAF3IP2	10758	genome.wustl.edu	37	6	111912592	111912592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_147686.2	-1	reviewed	p.S233F	1.000	73	0%	92	13%	52	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CTAGE9	643854	genome.wustl.edu	37	6	132031655	132031655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001145659.1	-1	provisional	p.A168V	0.000	494	0%	672	11.2%	5	0%	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
VTA1	51534	genome.wustl.edu	37	6	142468536	142468536	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_016485.3	+1	provisional	p.C38G	1.000	33	0%	48	37.5%	16	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_DUF605
UTRN	7402	genome.wustl.edu	37	6	144803358	144803358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_007124.2	+1	reviewed	p.D1174V	1.000	93	0%	130	36.2%	3	0%	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
RSPH3	83861	genome.wustl.edu	37	6	159398823	159398823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_031924.4	-1	validated	p.T477I	0.000	233	0%	285	26%	6	0%	benign(0.403)	tolerated(0.37)	neutral(0.148)	NULL
QKI	9444	genome.wustl.edu	37	6	163984613	163984613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006775.2	+1	validated	p.G266R	1.000	168	0%	152	33.6%	11	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM120B	84498	genome.wustl.edu	37	6	170626883	170626883	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032448.1	+1	provisional	p.S135	0.005	79	0%	114	35.1%	10	0%	-	-	-	superfamily_PIN domain-like
DNAH11	8701	genome.wustl.edu	37	7	21678684	21678684	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003777.3	+1	reviewed	e28+1	1.000	138	0%	196	32.1%	0	-	-	-	-	-
RAPGEF5	9771	genome.wustl.edu	37	7	22184789	22184789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_012294.3	-1	validated	p.A534T	0.982	56	0%	67	37.3%	1	0%	benign(0.005)	deleterious(0.01)	neutral(0.406)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
LOC402644	402644	genome.wustl.edu	37	7	28319213	28319213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001126493.1	-1	predicted	p.V36I	1.000	156	0%	287	26.8%	0	-	-	-	-	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
DPY19L1	23333	genome.wustl.edu	37	7	35050097	35050097	+	Silent	SNP	T	T	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015283.1	-1	validated	p.I176	0.995	68	0%	82	50%	2	0%	-	-	-	HMMPfam_DUF2211
NPC1L1	29881	genome.wustl.edu	37	7	44578791	44578791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_013389.2	-1	reviewed	p.G402A	1.000	61	0%	64	26.6%	0	-	probably_damaging(0.997)	tolerated(0.21)	deleterious(0.510)	NULL
ZMIZ2	83637	genome.wustl.edu	37	7	44802913	44802913	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_031449.3	+1	validated	p.D587	0.946	65	0%	72	16.7%	50	2%	-	-	-	superfamily_RING/U-box
MYO1G	64005	genome.wustl.edu	37	7	45005292	45005292	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_033054.2	-1	validated	p.P775	0.000	7	0.000	21	0.381	4	0%	-	-	-	NULL
RAMP3	10268	genome.wustl.edu	37	7	45222934	45222934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005856.2	+1	reviewed	p.V124I	0.000	54	0%	69	27.5%	26	0%	benign(0.004)	tolerated(0.25)	neutral(0.037)	HMMPfam_RAMP
ADCY1	107	genome.wustl.edu	37	7	45717468	45717468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_021116.2	+1	reviewed	p.R536W	1.000	99	1%	149	24.2%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
TNS3	64759	genome.wustl.edu	37	7	47408402	47408402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_022748.10	-1	validated	p.R614H	0.000	32	0%	32	28.1%	6	0%	benign(0.002)	tolerated(0.11)	neutral(0.272)	NULL
FIGNL1	63979	genome.wustl.edu	37	7	50514325	50514325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001042762.1	-1	validated	p.F221L	0.997	152	0%	226	57.5%	3	0%	possibly_damaging(0.442)	tolerated(0.44)	neutral(0.157)	NULL
GRB10	2887	genome.wustl.edu	37	7	50694568	50694568	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005311.4	-1	reviewed	p.V204	1.000	161	0%	240	19.6%	9	0%	-	-	-	HMMPfam_RA,HMMSmart_SM00314
GNAT3	346562	genome.wustl.edu	37	7	80117901	80117901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001102386.1	-1	provisional	p.V85M	1.000	23	0%	45	66.7%	0	-	benign(0.024)	deleterious(0)	neutral(0.446)	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
PCLO	27445	genome.wustl.edu	37	7	82584586	82584586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_033026.5	-1	validated	p.P1895S	0.997	239	0%	415	28%	0	-	probably_damaging(0.998)	-	-	NULL
DMTF1	9988	genome.wustl.edu	37	7	86815274	86815274	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001142327.1	+1	reviewed	p.N393	1.000	161	0%	236	30.5%	9	0%	-	-	-	NULL
PPP1R9A	55607	genome.wustl.edu	37	7	94917899	94917899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017650.2	+1	validated	p.V985I	0.999	104	0%	144	25%	2	0%	benign(0.282)	tolerated(0.26)	neutral(0.120)	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
ZKSCAN1	7586	genome.wustl.edu	37	7	99621800	99621800	+	Silent	SNP	T	T	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003439.1	+1	validated	p.P150	1.000	83	0%	175	33.1%	6	0%	-	-	-	HMMSmart_SM00431
CDHR3	222256	genome.wustl.edu	37	7	105658315	105658315	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152750.4	+1	validated	p.R484*	0.165	31	0%	39	20.5%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
LAMB4	22798	genome.wustl.edu	37	7	107720180	107720180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_007356.2	-1	validated	p.P585S	0.603	75	0%	124	34.7%	0	-	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
RNF148	378925	genome.wustl.edu	37	7	122342425	122342425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_198085.1	-1	validated	p.V127A	1.000	328	0%	406	28.3%	0	-	possibly_damaging(0.61)	tolerated(0.19)	neutral(0.261)	HMMPfam_PA,superfamily_SSF52025
SLC13A1	6561	genome.wustl.edu	37	7	122808448	122808448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_022444.3	-1	validated	p.S214G	0.894	78	0%	126	16.7%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_Na_sulph_symp
GCC1	79571	genome.wustl.edu	37	7	127223231	127223231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024523.5	-1	reviewed	p.L389M	1.000	85	0%	142	26.1%	8	0%	benign(0.006)	tolerated(0.18)	neutral(0.056)	NULL
PLXNA4	91584	genome.wustl.edu	37	7	131849951	131849951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020911.1	-1	validated	p.S1432L	1.000	48	0%	62	33.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
UBN2	254048	genome.wustl.edu	37	7	138921782	138921782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_173569.3	+1	validated	p.N84S	1.000	151	0%	382	55.5%	0	-	benign(0.018)	tolerated(0.35)	neutral(0.021)	NULL
TRBV4-1	28617	genome.wustl.edu	37	7	142013409	142013409	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000390357	+1	known	p.P88	0.000	198	0%	328	58.5%	1	0%	-	-	-	HMMPfam_V-set,superfamily_Immunoglobulin
EPHB6	2051	genome.wustl.edu	37	7	142565466	142565466	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004445.3	+1	reviewed	p.V617	0.247	13	0.000	8	0.625	1	0%	-	-	-	NULL
CASP2	835	genome.wustl.edu	37	7	143001010	143001010	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032982.2	+1	reviewed	p.G367	1.000	31	0%	56	58.9%	19	0%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
ZNF746	155061	genome.wustl.edu	37	7	149174844	149174844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152557.4	-1	validated	p.S175P	0.958	18	0%	19	57.9%	8	0%	possibly_damaging(0.727)	tolerated(0.12)	deleterious(0.525)	NULL
GIMAP6	474344	genome.wustl.edu	37	7	150325176	150325176	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024711.4	-1	reviewed	p.G170	0.000	159	0%	250	28%	2	0%	-	-	-	HMMPfam_AIG1,superfamily_P-loop containing nucleoside triphosphate hydrolases
TMUB1	83590	genome.wustl.edu	37	7	150779405	150779405	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_031434.3	-1	validated	p.Q82	0.997	48	0%	22	27.3%	189	0%	-	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151876996	151876996	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_170606.2	-1	reviewed	p.Y2455*	0.010	208	0%	289	25.6%	1	0%	-	-	-	NULL
PAXIP1	22976	genome.wustl.edu	37	7	154755423	154755423	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_007349.3	-1	reviewed	p.T649	0.252	51	0%	53	24.5%	9	0%	-	-	-	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
NCAPG2	54892	genome.wustl.edu	37	7	158451051	158451051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017760.5	-1	validated	p.A680D	0.958	36	0%	46	34.8%	13	0%	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	superfamily_ARM repeat
CLN8	2055	genome.wustl.edu	37	8	1728601	1728601	+	Silent	SNP	A	A	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018941.3	+1	reviewed	p.L243	0.000	120	0%	95	38.9%	6	0%	-	-	-	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC
DEFB104A	140596	genome.wustl.edu	37	8	7698697	7698697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_080389.2	+1	reviewed	p.L67P	0.001	211	0%	301	15.3%	0	-	probably_damaging(0.956)	tolerated(0.07)	deleterious(0.719)	NULL
RP1L1	94137	genome.wustl.edu	37	8	10469811	10469811	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_178857.5	-1	validated	p.E599	0.014	45	0%	28	42.9%	0	-	-	-	-	NULL
PIWIL2	55124	genome.wustl.edu	37	8	22173836	22173836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001135721.1	+1	validated	p.S763R	1.000	102	0%	111	34.2%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_Piwi,superfamily_Ribonuclease H-like
EPHX2	2053	genome.wustl.edu	37	8	27369368	27369368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001979.4	+1	reviewed	p.A226T	0.000	90	0%	89	39.3%	10	0%	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
CA8	767	genome.wustl.edu	37	8	61135315	61135315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004056.4	-1	reviewed	p.L211M	1.000	86	0%	76	39.5%	16	0%	benign(0.404)	tolerated(0.07)	neutral(0.449)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
ZFHX4	79776	genome.wustl.edu	37	8	77618103	77618103	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024721.4	+1	validated	p.T594S	0.994	74	0%	75	33.3%	0	-	benign(0.076)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77766549	77766549	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024721.4	+1	validated	p.S2419	0.626	81	1.2%	111	30.6%	0	-	-	-	-	NULL
PDP1	54704	genome.wustl.edu	37	8	94934860	94934860	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018444.3	+1	reviewed	p.Q191	1.000	104	0%	92	29.3%	10	0%	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
GDF6	392255	genome.wustl.edu	37	8	97172579	97172579	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001001557.2	-1	reviewed	p.N114	0.998	166	0%	56	10.7%	0	-	-	-	-	HMMPfam_TGFb_propeptide
LRP12	29967	genome.wustl.edu	37	8	105503226	105503226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_013437.4	-1	reviewed	p.Q752R	1.000	156	0%	192	42.7%	7	0%	benign(0.019)	tolerated(0.24)	neutral(0.038)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110497366	110497366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_177531.4	+1	validated	p.L3224I	1.000	90	0%	103	39.8%	0	-	benign(0.03)	tolerated(0.3)	neutral(0.030)	superfamily_Pectin lyase-like
CSMD3	114788	genome.wustl.edu	37	8	113649138	113649138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_198123.1	-1	validated	p.C1208Y	1.000	97	1%	103	42.7%	0	-	possibly_damaging(0.928)	deleterious(0)	deleterious(0.820)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
DSCC1	79075	genome.wustl.edu	37	8	120855866	120855866	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024094.2	-1	validated	p.L233	1.000	268	0%	269	33.8%	12	0%	-	-	-	HMMPfam_DUF2036
ZHX2	22882	genome.wustl.edu	37	8	123963864	123963864	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014943.3	+1	reviewed	p.P38	0.323	65	0%	102	35.3%	3	0%	-	-	-	NULL
FBXO32	114907	genome.wustl.edu	37	8	124526529	124526529	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_058229.2	-1	reviewed	p.G139	1.000	50	0%	47	25.5%	7	0%	-	-	-	NULL
RNF139	11236	genome.wustl.edu	37	8	125499280	125499280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_007218.3	+1	reviewed	p.V464F	1.000	234	0.4%	364	37.1%	45	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SLC45A4	57210	genome.wustl.edu	37	8	142238287	142238287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001080431.1	-1	provisional	p.L27F	0.002	118	0%	96	30.2%	0	-	possibly_damaging(0.779)	deleterious(0.01)	deleterious(0.697)	HMMPfam_MFS_1
SMARCA2	6595	genome.wustl.edu	37	9	2060957	2060958	+	In_Frame_Ins	INS	-	-	AGA	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003070.3	+1	reviewed	p.559in_frame_insK	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
INSL6	11172	genome.wustl.edu	37	9	5185468	5185468	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_007179.2	-1	reviewed	p.C45	0.961	122	0%	124	39.5%	0	-	-	-	-	HMMPfam_Insulin,HMMSmart_IlGF,superfamily_Insulin-like
PSIP1	11168	genome.wustl.edu	37	9	15474202	15474202	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001128217.1	-1	validated	p.G221	1.000	411	0%	477	33.1%	32	0%	-	-	-	NULL
KIAA1797	54914	genome.wustl.edu	37	9	20953055	20953055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017794.3	+1	validated	p.G1375R	1.000	83	0%	78	43.6%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
IL11RA	3590	genome.wustl.edu	37	9	34657108	34657108	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001142784.1	+1	reviewed	p.Q136	1.000	145	0%	118	39%	5	0%	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
GNE	10020	genome.wustl.edu	37	9	36246114	36246114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001128227.1	-1	reviewed	p.R208H	1.000	100	0%	123	33.3%	6	0%	possibly_damaging(0.515)	tolerated(0.12)	neutral(0.434)	HMMPfam_Epimerase_2,superfamily_SSF53756
ZCCHC7	84186	genome.wustl.edu	37	9	37357264	37357264	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032226.2	+1	validated	p.*544	0.003	72	0%	81	44.4%	48	0%	-	-	-	NULL
ZNF658	26149	genome.wustl.edu	37	9	40773862	40773862	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_033160.5	-1	validated	p.N471	0.000	322	0%	298	24.5%	0	-	-	-	-	NULL
ANKRD20A4	728747	genome.wustl.edu	37	9	69423453	69423453	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001098805.1	+1	provisional	p.A583	0.940	328	0%	352	9.7%	0	-	-	-	-	NULL
TDRD7	23424	genome.wustl.edu	37	9	100258092	100258092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014290.2	+1	validated	p.S1075L	0.983	156	0%	150	36%	30	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
TBC1D2	55357	genome.wustl.edu	37	9	100971400	100971400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018421.3	-1	validated	p.T567M	0.986	327	0%	478	40.4%	17	0%	possibly_damaging(0.911)	tolerated(0.22)	neutral(0.405)	NULL
SMC2	10592	genome.wustl.edu	37	9	106878527	106878527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001042550.1	+1	validated	p.Y573C	1.000	55	0%	68	17.6%	12	0%	benign(0.012)	deleterious(0.03)	neutral(0.365)	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
MUSK	4593	genome.wustl.edu	37	9	113562662	113562662	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005592.3	+1	reviewed	p.R668	0.988	203	0%	209	36.4%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PTBP3	9991	genome.wustl.edu	37	9	114994471	114994471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005156.5	-1	validated	p.T338A	0.987	95	0%	123	22%	10	0%	benign(0.001)	tolerated(1)	-	NULL
RGS3	5998	genome.wustl.edu	37	9	116303634	116303634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017790.3	+1	reviewed	p.M579T	1.000	247	0%	207	35.7%	1	0%	possibly_damaging(0.812)	deleterious(0)	deleterious(0.750)	NULL
PBX3	5090	genome.wustl.edu	37	9	128723085	128723085	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006195.5	+1	validated	p.A322	0.872	31	0%	36	13.9%	0	-	-	-	-	NULL
ODF2	4957	genome.wustl.edu	37	9	131221915	131221915	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_153437.1	+1	reviewed	p.G34	0.983	35	0%	28	32.1%	30	0%	-	-	-	NULL
QSOX2	169714	genome.wustl.edu	37	9	139100733	139100733	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_181701.3	-1	validated	p.G646	0.000	36	0%	22	36.4%	9	0%	-	-	-	NULL
PFKP	5214	genome.wustl.edu	37	10	3143745	3143745	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002627.3	+1	validated	p.N151	0.000	5	0.000	9	0.556	97	0%	-	-	-	HMMPfam_PFK,superfamily_Phosphofructokinase
SFMBT2	57713	genome.wustl.edu	37	10	7214543	7214543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001029880.1	-1	provisional	p.A689T	0.709	34	0%	23	39.1%	0	-	benign(0.001)	tolerated(0.95)	-	NULL
SFMBT2	57713	genome.wustl.edu	37	10	7290596	7290596	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001029880.1	-1	provisional	p.R296*	0.996	59	0%	86	36%	0	-	-	-	-	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
MYO3A	53904	genome.wustl.edu	37	10	26409674	26409674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017433.4	+1	reviewed	p.A616T	1.000	103	0%	114	22.8%	0	-	benign(0.027)	tolerated(0.45)	neutral(0.013)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
ZNF438	220929	genome.wustl.edu	37	10	31139023	31139023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001143766.1	-1	validated	p.Q104R	1.000	189	0%	145	37.2%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EPC1	80314	genome.wustl.edu	37	10	32573762	32573762	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_025209.2	-1	provisional	p.L536	1.000	131	0%	147	33.3%	13	0%	-	-	-	NULL
NRP1	8829	genome.wustl.edu	37	10	33495156	33495156	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000374816	-1	known	p.S629A	0.001	93	0%	69	34.8%	0	-	unknown(0)	-	-	NULL
CUL2	8453	genome.wustl.edu	37	10	35324169	35324169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003591.2	-1	provisional	p.M311I	1.000	69	0%	64	28.1%	23	0%	benign(0.311)	deleterious(0.03)	neutral(0.462)	HMMPfam_Cullin,superfamily_Cullin repeat
ZNF33A	7581	genome.wustl.edu	37	10	38353016	38353016	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000277672	+1	known	p.A130P	0.230	146	0%	150	40%	11	0%	benign(0.011)	tolerated(0.11)	neutral(0.272)	NULL
MAPK8	5599	genome.wustl.edu	37	10	49628295	49628295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_139047.1	+1	reviewed	p.T183M	1.000	114	0%	126	40.5%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PARG	8505	genome.wustl.edu	37	10	51130651	51130651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003631.2	-1	reviewed	p.D507G	1.000	74	0%	65	38.5%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TET1	80312	genome.wustl.edu	37	10	70404893	70404893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_030625.2	+1	validated	p.A803T	0.997	257	0%	229	38.9%	0	-	benign(0.107)	deleterious(0)	neutral(0.453)	NULL
NPFFR1	64106	genome.wustl.edu	37	10	72025953	72025953	+	Missense_Mutation	SNP	C	C	T	rs188869837	by1000genomes	TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000277942	-1	known	p.V68M	0.998	130	0%	155	36.8%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DDIT4	54541	genome.wustl.edu	37	10	74034674	74034674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_019058.2	+1	validated	p.R143W	1.000	23	0%	17	35.3%	518	0.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RTP801_C
NDST2	8509	genome.wustl.edu	37	10	75567302	75567302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003635.3	-1	reviewed	p.H282R	1.000	61	0%	58	22.4%	4	0%	benign(0.025)	tolerated(0.45)	neutral(0.013)	NULL
MAT1A	4143	genome.wustl.edu	37	10	82043759	82043760	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000429.2	-1	reviewed	p.C68fs	1.000:0.995	-	-	-	-	-	-	-	-	-	HMMPfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synt
PTEN	5728	genome.wustl.edu	37	10	89720823	89720823	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000371953	+1	known	p.L325R	1.000	210	0%	277	40.8%	187	0%	benign(0.011)	deleterious(0.03)	neutral(0.365)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
IDE	3416	genome.wustl.edu	37	10	94216151	94216151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004969.3	-1	reviewed	p.V954A	0.994	116	0%	130	29.2%	43	0%	possibly_damaging(0.63)	deleterious(0.01)	deleterious(0.626)	superfamily_Metalloenz_metal-bd
PLCE1	51196	genome.wustl.edu	37	10	96025410	96025410	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_016341.3	+1	reviewed	p.E1354*	1.000	214	0%	198	31.8%	5	0%	-	-	-	HMMPfam_efhand_like,superfamily_EF-hand
ZNF518A	9849	genome.wustl.edu	37	10	97919538	97919538	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000371192	+1	known	p.N1153	1.000	155	0%	174	32.8%	18	0%	-	-	-	NULL
TLL2	7093	genome.wustl.edu	37	10	98192576	98192576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_012465.3	-1	validated	p.G170W	1.000	73	0%	138	38.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Astacin,HMMSmart_ZnMc,superfamily_SSF55486
PSD	5662	genome.wustl.edu	37	10	104164484	104164484	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002779.3	-1	provisional	p.P852	1.000	116	0%	45	37.8%	11	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
C10orf81	79949	genome.wustl.edu	37	10	115540501	115540501	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000369312	+1	known	p.P354	0.047	72	0%	52	40.4%	7	0%	-	-	-	NULL
ATRNL1	26033	genome.wustl.edu	37	10	116889252	116889252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_207303.2	+1	validated	p.D262Y	1.000	117	0%	133	34.6%	0	-	possibly_damaging(0.78)	deleterious(0.02)	deleterious(0.674)	HMMPfam_EGF_2,superfamily_EGF/Laminin
GRK5	2869	genome.wustl.edu	37	10	121182725	121182727	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005308.2	+1	reviewed	p.E131in_frame_del	0.859:0.998:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
MCMBP	79892	genome.wustl.edu	37	10	121595125	121595125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024834.2	-1	validated	p.V547A	0.987	120	0.8%	205	36.1%	76	0%	benign(0.021)	tolerated(0.51)	neutral(0.010)	HMMPfam_DUF2044
FGFR2	2263	genome.wustl.edu	37	10	123247516	123247516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_022970.3	-1	reviewed	p.K660E	1.000	215	0%	266	38.3%	47	0%	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
KNDC1	85442	genome.wustl.edu	37	10	134997385	134997385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152643.6	+1	validated	p.A173T	0.063	14	0%	29	55.2%	0	-	possibly_damaging(0.93)	tolerated(0.28)	neutral(0.408)	HMMSmart_SM00750
PAOX	196743	genome.wustl.edu	37	10	135204850	135204850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152911.2	+1	validated	p.R476H	0.920	31	0%	29	31%	26	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
CDHR5	53841	genome.wustl.edu	37	11	618996	618996	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_021924.4	-1	reviewed	p.P521	0.006	10	0.000	8	0.625	0	-	-	-	-	NULL
CCKBR	887	genome.wustl.edu	37	11	6292315	6292315	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_176875.2	+1	reviewed	p.Q296*	1.000	46	0%	58	48.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DCHS1	8642	genome.wustl.edu	37	11	6655487	6655487	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003737.2	-1	reviewed	p.S616	0.996	135	0.7%	151	40.4%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DENND5A	23258	genome.wustl.edu	37	11	9215039	9215040	+	Splice_Site	DEL	CA	CA	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015213.2	-1	validated	e5+2	1.000	-	-	-	-	-	-	-	-	-	-
MICALCL	84953	genome.wustl.edu	37	11	12315536	12315536	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032867.2	+1	validated	p.E186	0.998	151	0%	143	22.4%	0	-	-	-	-	NULL
NAV2	89797	genome.wustl.edu	37	11	20122629	20122629	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_182964.5	+1	validated	p.R2113	1.000	157	0%	155	43.2%	15	0%	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC35C1	55343	genome.wustl.edu	37	11	45827532	45827532	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018389.4	+1	reviewed	p.K60N	0.997	54	0%	30	46.7%	23	0%	possibly_damaging(0.68)	tolerated(0.08)	deleterious(0.542)	NULL
AMBRA1	55626	genome.wustl.edu	37	11	46564217	46564218	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017749.2	-1	validated	p.V360fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NUP160	23279	genome.wustl.edu	37	11	47834490	47834490	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015231.1	-1	validated	p.L632	0.755	86	0%	83	32.5%	4	0%	-	-	-	NULL
OR5M3	219482	genome.wustl.edu	37	11	56237751	56237751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001004742.1	-1	provisional	p.V75I	0.004	244	0%	245	32.2%	0	-	benign(0.09)	tolerated(0.77)	neutral(0.007)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SERPING1	710	genome.wustl.edu	37	11	57367623	57367623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000062.2	+1	reviewed	p.Q108R	0.003	162	0%	174	33.3%	71	0%	benign(0.004)	tolerated(0.26)	neutral(0.034)	superfamily_Prot_inh_serpin
OR5B21	219968	genome.wustl.edu	37	11	58274977	58274977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001005218.1	-1	provisional	p.G201D	0.001	204	0%	213	39%	0	-	possibly_damaging(0.507)	deleterious(0)	deleterious(0.614)	HMMPfam_7tm_1,superfamily_SSF81321
DDB1	1642	genome.wustl.edu	37	11	61079299	61079299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001923.3	-1	validated	p.T745M	0.913	77	0%	109	26.6%	114	0%	benign(0.094)	tolerated(0.06)	neutral(0.330)	NULL
MTA2	9219	genome.wustl.edu	37	11	62366046	62366046	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004739.2	-1	reviewed	p.R86	1.000	217	0%	246	36.6%	60	0%	-	-	-	HMMPfam_BAH,HMMSmart_BAH
ZBTB3	79842	genome.wustl.edu	37	11	62521013	62521013	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024784.3	-1	validated	p.L92	1.000	68	0%	94	29.8%	2	0%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
CABP2	51475	genome.wustl.edu	37	11	67288511	67288511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_016366.2	-1	reviewed	p.I122V	1.000	36	0%	58	37.9%	0	-	benign(0.091)	tolerated(0.09)	neutral(0.303)	superfamily_EF-hand
C11orf51	25906	genome.wustl.edu	37	11	71820956	71820956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014042.2	-1	validated	p.E113K	1.000	82	0%	84	40.5%	319	0%	benign(0.019)	tolerated(0.1)	neutral(0.287)	NULL
LRRC32	2615	genome.wustl.edu	37	11	76371946	76371946	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001128922.1	-1	reviewed	p.E231Q	0.985	67	0%	71	52.1%	1	0%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	superfamily_SSF52058
SYTL2	54843	genome.wustl.edu	37	11	85435402	85435402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_206927.2	-1	reviewed	p.L700I	0.001	177	1.1%	185	40%	0	-	benign(0.076)	deleterious(0.01)	neutral(0.411)	NULL
FAT3	120114	genome.wustl.edu	37	11	92495338	92495338	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001008781.2	+1	validated	e4+2	1.000	292	0%	313	37.4%	0	-	-	-	-	-
FAT3	120114	genome.wustl.edu	37	11	92600034	92600034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001008781.2	+1	validated	p.T3929M	0.999	15	0%	21	76.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
KBTBD3	143879	genome.wustl.edu	37	11	105924879	105924879	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152433.3	-1	validated	p.H179	0.961	45	0%	68	36.8%	0	-	-	-	-	HMMPfam_BACK
ATM	472	genome.wustl.edu	37	11	108198485	108198485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000051.3	+1	reviewed	p.K2363N	1.000	69	0%	94	53.2%	1	0%	benign(0.161)	deleterious(0.01)	neutral(0.420)	HMMPfam_FAT,superfamily_ARM repeat
DLAT	1737	genome.wustl.edu	37	11	111931874	111931874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001931.4	+1	reviewed	p.L597P	1.000	38	0%	51	35.3%	30	0%	probably_damaging(0.985)	tolerated(0.06)	deleterious(0.754)	HMMPfam_2-oxoacid_dh,superfamily_CoA-dependent acyltransferases
APOA4	337	genome.wustl.edu	37	11	116691982	116691982	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000482.3	-1	reviewed	p.R264	0.854	69	0%	54	29.6%	0	-	-	-	-	HMMPfam_Apolipoprotein,superfamily_Apolipoprotein
SIDT2	51092	genome.wustl.edu	37	11	117063566	117063566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001040455.1	+1	validated	p.V697I	1.000	41	0%	21	42.9%	9	0%	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
HYOU1	10525	genome.wustl.edu	37	11	118917500	118917500	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001130991.1	-1	reviewed	p.A870	0.952	71	0%	106	34%	121	0.8%	-	-	-	superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
ZNF202	7753	genome.wustl.edu	37	11	123597565	123597565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003455.2	-1	validated	p.G363C	0.011	300	0%	304	39.1%	6	0%	possibly_damaging(0.792)	tolerated(0.07)	deleterious(0.616)	NULL
DCPS	28960	genome.wustl.edu	37	11	126215349	126215349	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014026.3	+1	validated	p.F285	1.000	59	1.7%	40	45%	121	0%	-	-	-	HMMPfam_DcpS,superfamily_His_triad-like_motif
IGSF9B	22997	genome.wustl.edu	37	11	133791240	133791240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014987.1	-1	validated	p.S794P	0.407	22	0%	25	32%	1	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
CD4	920	genome.wustl.edu	37	12	6927593	6927593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000616.3	+1	validated	p.P388H	0.002	58	0%	82	17.1%	16	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_C2-set,superfamily_Immunoglobulin
CLSTN3	9746	genome.wustl.edu	37	12	7295488	7295488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014718.3	+1	validated	p.Y522H	1.000	117	0%	149	36.2%	48	0%	probably_damaging(0.975)	tolerated(0.48)	neutral(0.427)	superfamily_ConA_like_lec_gl
CD163L1	283316	genome.wustl.edu	37	12	7521563	7521564	+	Splice_Site	INS	-	-	GA	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_174941.4	-1	reviewed	e16-2	0.067:0.055	-	-	-	-	-	-	-	-	-	-
DDX47	51202	genome.wustl.edu	37	12	12975666	12975666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_016355.3	+1	reviewed	p.K211N	1.000	207	0%	229	31%	49	0%	possibly_damaging(0.824)	tolerated(0.08)	deleterious(0.612)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
PLBD1	79887	genome.wustl.edu	37	12	14706300	14706300	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024829.5	-1	validated	p.V54	0.000	82	0%	113	37.2%	1	0%	-	-	-	HMMPfam_Phospholip_B
EPS8	2059	genome.wustl.edu	37	12	15803867	15803867	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004447.5	-1	reviewed	p.L442V	1.000	198	0%	272	33.8%	14	0%	benign(0.167)	tolerated(0.35)	neutral(0.036)	NULL
RERGL	79785	genome.wustl.edu	37	12	18242163	18242163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024730.2	-1	provisional	p.A19T	0.000	36	0%	49	36.7%	0	-	benign(0.226)	deleterious(0)	neutral(0.467)	superfamily_SSF52540
C12orf71	728858	genome.wustl.edu	37	12	27235212	27235212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001080406.1	-1	inferred	p.R69C	0.013	131	0%	135	39.3%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
PDZRN4	29951	genome.wustl.edu	37	12	41967685	41967685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_013377.3	+1	validated	p.T777I	1.000	106	0%	110	41.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRICKLE1	144165	genome.wustl.edu	37	12	42853801	42853803	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001144881.1	-1	reviewed	p.S770in_frame_del	1.000:1.000:0.997	-	-	-	-	-	-	-	-	-	NULL
PRICKLE1	144165	genome.wustl.edu	37	12	42863294	42863294	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001144881.1	-1	reviewed	p.I114	0.137	77	0%	84	28.6%	3	0%	-	-	-	HMMPfam_PET
DIP2B	57609	genome.wustl.edu	37	12	51117073	51117073	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_173602.2	+1	validated	p.T1085	0.000	55	0%	83	41%	5	0%	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
SLC11A2	4891	genome.wustl.edu	37	12	51390719	51390719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000617.2	-1	reviewed	p.K238E	1.000	90	0%	77	29.9%	11	0%	benign(0.001)	tolerated(0.51)	neutral(0.009)	HMMPfam_Nramp
EIF4B	1975	genome.wustl.edu	37	12	53421677	53421677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001417.4	+1	validated	p.D260G	1.000	124	0%	136	38.2%	155	0%	unknown(0)	tolerated(0.08)	-	superfamily_SSF54928
SPRYD3	84926	genome.wustl.edu	37	12	53460214	53460214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032840.2	-1	validated	p.R360W	0.843	48	0%	60	40%	32	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00449
NACA	4666	genome.wustl.edu	37	12	57113329	57113329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001113203.1	-1	validated	p.T662N	0.605	36	0%	39	35.9%	4	0%	unknown(0)	tolerated(0.09)	-	NULL
SDR9C7	121214	genome.wustl.edu	37	12	57324171	57324171	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_148897.2	-1	reviewed	p.N133	1.000	108	0%	95	40%	0	-	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-bd
KIF5A	3798	genome.wustl.edu	37	12	57971529	57971529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004984.2	+1	reviewed	p.Q778H	1.000	119	0%	155	38.7%	0	-	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	superfamily_Prefoldin
MON2	23041	genome.wustl.edu	37	12	62940761	62940761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015026.2	+1	validated	p.V888M	1.000	46	0%	44	34.1%	6	0%	possibly_damaging(0.871)	tolerated(0.07)	deleterious(0.657)	HMMPfam_DUF1981,superfamily_ARM-type_fold
SLC35E3	55508	genome.wustl.edu	37	12	69140386	69140388	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018656.2	+1	validated	p.L80in_frame_del	0.934:0.979:0.941	-	-	-	-	-	-	-	-	-	NULL
FRS2	10818	genome.wustl.edu	37	12	69965990	69965990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001042555.1	+1	validated	p.S169P	1.000	76	0%	131	42.7%	10	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
ZFC3H1	196441	genome.wustl.edu	37	12	72021565	72021565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_144982.4	-1	validated	p.K1366E	1.000	71	0%	76	28.9%	0	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	superfamily_Protein prenylyltransferase
CDK17	5128	genome.wustl.edu	37	12	96704853	96704853	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002595.3	-1	reviewed	p.R174*	1.000	166	0%	194	42.3%	3	0%	-	-	-	NULL
APAF1	317	genome.wustl.edu	37	12	99117070	99117070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_181861.1	+1	reviewed	p.S1062P	1.000	125	0%	132	31.8%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
UHRF1BP1L	23074	genome.wustl.edu	37	12	100451403	100451403	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015054.1	-1	validated	p.E1124*	1.000	87	0%	98	26.5%	6	0%	-	-	-	NULL
C12orf23	90488	genome.wustl.edu	37	12	107365082	107365082	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152261.2	+1	validated	p.S88	1.000	171	0%	162	40.1%	40	0%	-	-	-	NULL
C12orf51	283450	genome.wustl.edu	37	12	112703077	112703077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001109662.2	-1	validated	p.Y409H	1.000	81	0%	96	33.3%	0	-	probably_damaging(0.983)	-	-	NULL
TESC	54997	genome.wustl.edu	37	12	117494618	117494618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017899.3	-1	validated	p.D121N	1.000	29	0%	27	37%	54	0%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	superfamily_EF-hand
NOS1	4842	genome.wustl.edu	37	12	117662909	117662909	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000620.2	-1	reviewed	p.Q1246	1.000	73	0%	66	36.4%	0	-	-	-	-	superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
HPD	3242	genome.wustl.edu	37	12	122281717	122281718	+	Frame_Shift_Del	DEL	CT	CT	-	rs142252243	by1000genomes	TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002150.2	-1	reviewed	p.G285fs	1.000:0.977	-	-	-	-	-	-	-	-	-	HMMPfam_Glyoxalase,superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
WDR66	144406	genome.wustl.edu	37	12	122405989	122405989	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_144668.4	+1	validated	p.A895	0.017	19	0%	35	28.6%	20	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
SACS	26278	genome.wustl.edu	37	13	23905768	23905768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014363.4	-1	reviewed	p.V4083I	0.999	127	0%	122	40.2%	5	0%	possibly_damaging(0.9)	tolerated(0.75)	neutral(0.358)	NULL
SACS	26278	genome.wustl.edu	37	13	23908764	23908764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014363.4	-1	reviewed	p.I3084T	0.980	86	1.2%	100	27%	1	0%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
TNFRSF19	55504	genome.wustl.edu	37	13	24190168	24190168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018647.2	+1	reviewed	p.G115R	1.000	93	0%	58	37.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TNF receptor-like
INTS6	26512	genome.wustl.edu	37	13	51941946	51941946	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_012141.2	-1	reviewed	p.A855	0.988	57	0%	61	32.8%	35	0%	-	-	-	NULL
DIAPH3	81624	genome.wustl.edu	37	13	60582729	60582729	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001042517.1	-1	validated	p.D321	1.000	186	0.5%	215	36.7%	5	0%	-	-	-	HMMPfam_Drf_FH3
DIS3	22894	genome.wustl.edu	37	13	73346014	73346014	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014953.3	-1	validated	p.D508	1.000	134	0%	165	40.6%	6	0%	-	-	-	HMMPfam_RNB
TUBGCP3	10426	genome.wustl.edu	37	13	113200145	113200145	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006322.4	-1	provisional	p.H401	0.878	160	0%	140	34.3%	10	0%	-	-	-	HMMPfam_Spc97_Spc98
RPGRIP1	57096	genome.wustl.edu	37	14	21793122	21793122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020366.3	+1	reviewed	p.I703T	0.758	149	0%	280	24.6%	0	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
SUPT16H	11198	genome.wustl.edu	37	14	21830374	21830374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_007192.3	-1	reviewed	p.A592V	1.000	44	0%	79	17.7%	43	0%	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	HMMPfam_SPT16
HOMEZ	57594	genome.wustl.edu	37	14	23745163	23745163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020834.2	-1	validated	p.P425H	1.000	48	0%	61	55.7%	56	0%	possibly_damaging(0.952)	tolerated(0.22)	neutral(0.438)	superfamily_Homeodomain-like
AP1G2	8906	genome.wustl.edu	37	14	24033799	24033799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003917.2	-1	reviewed	p.M298T	1.000	112	0%	97	24.7%	28	0%	benign(0.191)	deleterious(0)	neutral(0.463)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
SSTR1	6751	genome.wustl.edu	37	14	38679663	38679663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001049.2	+1	reviewed	p.A357T	0.999	49	2%	87	52.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
FAM179B	23116	genome.wustl.edu	37	14	45431996	45431996	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015091.2	+1	validated	p.G124	1.000	52	0%	76	25%	1	0%	-	-	-	NULL
TXNDC16	57544	genome.wustl.edu	37	14	52899168	52899168	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020784.2	-1	validated	p.K778*	0.001	103	0%	180	18.9%	4	0%	-	-	-	NULL
SLC35F4	341880	genome.wustl.edu	37	14	58030886	58030886	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001080455.1	-1	provisional	p.R511	0.997	96	0%	159	11.3%	0	-	-	-	-	NULL
ARID4A	5926	genome.wustl.edu	37	14	58832863	58832863	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002892.3	+1	reviewed	p.P1146	0.998	298	0.7%	545	26.2%	7	0%	-	-	-	NULL
DACT1	51339	genome.wustl.edu	37	14	59113012	59113012	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_016651.5	+1	validated	p.A557	0.889	70	0%	95	53.7%	3	0%	-	-	-	NULL
SIX4	51804	genome.wustl.edu	37	14	61186821	61186821	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017420.4	-1	reviewed	p.S402	1.000	86	0%	151	21.9%	5	0%	-	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64634341	64634341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_182914.2	+1	reviewed	p.Q5630R	1.000	91	0%	111	21.6%	3	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMSmart_SPEC,superfamily_Spectrin
ABCD4	5826	genome.wustl.edu	37	14	74759863	74759863	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005050.3	-1	reviewed	p.L270	1.000	62	0%	99	21.2%	16	0%	unknown(0)	-	-	HMMPfam_ABC_membrane_2,superfamily_ABC_TM_1
SNW1	22938	genome.wustl.edu	37	14	78205307	78205307	+	Splice_Site	SNP	A	A	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_012245.2	-1	reviewed	e4+2	1.000	339	0%	687	26.6%	0	-	-	-	-	-
CEP128	145508	genome.wustl.edu	37	14	81259318	81259318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152446.3	-1	validated	p.R449H	0.688	169	0%	304	29.6%	2	0%	probably_damaging(0.994)	tolerated(0.2)	deleterious(0.501)	NULL
EML5	161436	genome.wustl.edu	37	14	89154750	89154750	+	Silent	SNP	T	T	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_183387.2	-1	validated	p.A869	0.944	398	0%	687	28.7%	0	-	-	-	-	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
RIN3	79890	genome.wustl.edu	37	14	93119291	93119291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024832.3	+1	validated	p.R633C	0.570	32	0%	28	57.1%	6	0%	benign(0.079)	tolerated(0.17)	neutral(0.065)	superfamily_VPS9 domain (Pfam 02204)
UNC79	57578	genome.wustl.edu	37	14	94088426	94088426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020818.3	+1	validated	p.S1439L	0.998	323	0%	459	25.3%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
SERPINA6	866	genome.wustl.edu	37	14	94772437	94772437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001756.3	-1	reviewed	p.T335A	0.004	88	0%	138	44.2%	18	0%	possibly_damaging(0.662)	deleterious(0.01)	deleterious(0.640)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINA11	256394	genome.wustl.edu	37	14	94909115	94909115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001080451.1	-1	provisional	p.E366G	1.000	44	0%	79	54.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINA3	12	genome.wustl.edu	37	14	95085640	95085640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001085.4	+1	reviewed	p.I251T	0.000	52	0%	71	56.3%	49	0%	benign(0)	tolerated(1)	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
AK7	122481	genome.wustl.edu	37	14	96871121	96871121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152327.2	+1	validated	p.R108C	0.016	63	0%	68	25%	1	0%	benign(0.006)	tolerated(0.07)	neutral(0.319)	superfamily_NAD(P)-binding Rossmann-fold domains
CDCA4	55038	genome.wustl.edu	37	14	105478029	105478029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017955.3	-1	reviewed	p.R80C	0.999	44	0%	46	34.8%	29	0%	benign(0.007)	deleterious(0.01)	neutral(0.406)	NULL
IGHM	3507	genome.wustl.edu	37	14	106321885	106321885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000496208	-1	known	p.V116I	0.035	59	0%	66	22.7%	75	0%	benign(0.004)	tolerated(0.9)	-	superfamily_Immunoglobulin
LOC729722	729722	genome.wustl.edu	37	15	20093065	20093065	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	XM_001716538.2	+1	model	p.P268	0.045	22	0%	38	26.3%	0	-	-	-	-	NULL
MAGEL2	54551	genome.wustl.edu	37	15	23890124	23890124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_019066.4	-1	reviewed	p.W319C	0.998	40	0%	26	34.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GPR176	11245	genome.wustl.edu	37	15	40093543	40093543	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_007223.1	-1	provisional	p.P446	0.646	144	0%	118	34.7%	1	0%	-	-	-	NULL
BUB1B	701	genome.wustl.edu	37	15	40502387	40502388	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001211.5	+1	reviewed	p.S788fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
GCHFR	2644	genome.wustl.edu	37	15	41059514	41059514	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005258.2	+1	reviewed	p.G74	1.000	19	0%	24	50%	130	0%	-	-	-	HMMPfam_GFRP,superfamily_GTP cyclohydrolase I feedback regulatory protein GFRP
MGA	23269	genome.wustl.edu	37	15	42005421	42005421	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001080541.2	+1	validated	p.R1053*	1.000	99	0%	162	38.9%	0	-	-	-	-	NULL
MGA	23269	genome.wustl.edu	37	15	42052628	42052628	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001080541.2	+1	validated	p.R2482	0.958	134	0%	193	23.3%	1	0%	-	-	-	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
SKOR1	390598	genome.wustl.edu	37	15	68122631	68122631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001031807.1	+1	provisional	p.D793G	1.000	37	0%	25	28%	1	0%	possibly_damaging(0.9)	deleterious(0.05)	deleterious(0.702)	NULL
CHRNB4	1143	genome.wustl.edu	37	15	78921375	78921375	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000750.3	-1	validated	p.V424	0.981	92	0%	74	40.5%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
CPEB1	64506	genome.wustl.edu	37	15	83222257	83222257	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_030594.3	-1	reviewed	p.W341*	1.000	96	0%	95	35.8%	0	-	-	-	-	NULL
AKAP13	11214	genome.wustl.edu	37	15	86270397	86270397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006738.4	+1	reviewed	p.P2312L	1.000	133	0.8%	182	26.4%	9	0%	possibly_damaging(0.871)	deleterious(0)	deleterious(0.783)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
TTLL13	440307	genome.wustl.edu	37	15	90799117	90799117	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001029964.2	+1	validated	p.D183V	1.000	204	0%	261	28.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TTL,superfamily_SSF56059
VPS33B	26276	genome.wustl.edu	37	15	91543024	91543024	+	Splice_Site	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018668.3	-1	reviewed	e22-1	1.000	236	0%	353	41.4%	0	-	-	-	-	-
SLCO3A1	28232	genome.wustl.edu	37	15	92694208	92694208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_013272.3	+1	validated	p.A573T	1.000	74	0%	72	34.7%	2	0%	possibly_damaging(0.907)	deleterious(0)	deleterious(0.805)	HMMPfam_OATP,superfamily_MFS general substrate transporter
ST8SIA2	8128	genome.wustl.edu	37	15	92988005	92988005	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006011.3	+1	reviewed	p.L230	1.000	29	0%	30	30%	0	-	-	-	-	HMMPfam_Glyco_transf_29
AXIN1	8312	genome.wustl.edu	37	16	347072	347072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003502.2	-1	reviewed	p.R647C	0.829	14	0%	24	45.8%	81	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ADCY9	115	genome.wustl.edu	37	16	4057425	4057425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001116.2	-1	reviewed	p.S610P	0.591	100	0%	100	18%	0	-	probably_damaging(0.983)	tolerated(0.28)	neutral(0.461)	NULL
PPL	5493	genome.wustl.edu	37	16	4936042	4936042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002705.4	-1	reviewed	p.E872K	0.985	72	0%	47	29.8%	0	-	possibly_damaging(0.434)	tolerated(0.14)	neutral(0.391)	NULL
ENSG00000078328	0	genome.wustl.edu	37	16	7759079	7759079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000355637	+1	known	p.P378L	1.000	127	0%	120	33.3%	0	-	unknown(0)	deleterious(0)	-	NULL
ABAT	18	genome.wustl.edu	37	16	8862792	8862792	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000663.4	+1	reviewed	p.K260Q	1.000	116	0%	120	38.3%	0	-	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
C16orf72	29035	genome.wustl.edu	37	16	9186802	9186802	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014117.2	+1	validated	p.L84H	1.000	9	0.000	18	0.333	31	0%	probably_damaging(0.973)	tolerated(0.21)	neutral(0.459)	NULL
XYLT1	64131	genome.wustl.edu	37	16	17202736	17202736	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_022166.3	-1	reviewed	p.G899fs	0.998	-	-	-	-	-	-	-	-	-	NULL
SYT17	51760	genome.wustl.edu	37	16	19194992	19194992	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_016524.2	+1	validated	p.E158	1.000	120	0%	216	30.6%	6	0%	-	-	-	NULL
ACSM1	116285	genome.wustl.edu	37	16	20634895	20634895	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_052956.2	-1	validated	e13-1	1.000	187	0%	242	44.2%	0	-	-	-	-	-
DNAH3	55567	genome.wustl.edu	37	16	20952748	20952748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_017539.1	-1	provisional	p.R3877G	0.821	428	0%	430	33.5%	0	-	probably_damaging(0.988)	tolerated(0.33)	neutral(0.462)	HMMPfam_Dynein_heavy
TNRC6A	27327	genome.wustl.edu	37	16	24801151	24801151	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014494.2	+1	reviewed	p.S396	0.999	99	0%	80	32.5%	1	0%	-	-	-	NULL
ZNF668	79759	genome.wustl.edu	37	16	31072937	31072937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024706.4	-1	validated	p.V438M	0.000	57	0%	53	32.1%	24	0%	probably_damaging(0.989)	tolerated(0.27)	deleterious(0.473)	NULL
ADCY7	113	genome.wustl.edu	37	16	50339459	50339459	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001114.3	+1	reviewed	p.D547	0.023	55	0%	21	47.6%	8	0%	-	-	-	HMMPfam_DUF1053
RPGRIP1L	23322	genome.wustl.edu	37	16	53686654	53686654	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015272.2	-1	reviewed	p.R649*	0.533	109	0%	116	40.5%	0	-	-	-	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
NFATC3	4775	genome.wustl.edu	37	16	68200744	68200744	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_173165.1	+1	reviewed	e5-2	1.000	66	0%	80	43.8%	0	-	-	-	-	-
HAS3	3038	genome.wustl.edu	37	16	69143619	69143619	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005329.2	+1	reviewed	p.S107	0.404	25	0%	17	35.3%	3	0%	-	-	-	HMMPfam_Glycos_transf_2,superfamily_SSF53448
FUK	197258	genome.wustl.edu	37	16	70503184	70503184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_145059.2	+1	reviewed	p.A305T	1.000	21	0%	16	25%	6	0%	benign(0.001)	tolerated(0.41)	neutral(0.015)	HMMPfam_Fucokinase
FTSJD1	55783	genome.wustl.edu	37	16	71319778	71319778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001099642.1	-1	validated	p.A16T	0.099	119	0%	147	32.7%	3	0%	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
PHLPP2	23035	genome.wustl.edu	37	16	71683535	71683535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015020.2	-1	validated	p.A1077D	1.000	115	0%	98	35.7%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
DHX38	9785	genome.wustl.edu	37	16	72139507	72139507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014003.3	+1	reviewed	p.G824V	1.000	86	0%	98	36.7%	40	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
ZFHX3	463	genome.wustl.edu	37	16	72923723	72923723	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006885.3	-1	reviewed	p.R1119*	1.000	84	0%	95	42.1%	1	0%	-	-	-	HMMSmart_SM00451
CNTNAP4	85445	genome.wustl.edu	37	16	76528881	76528881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_138994.3	+1	validated	p.L646I	0.960	225	0.9%	276	38.8%	0	-	benign(0)	tolerated(0.85)	neutral(0.001)	superfamily_Concanavalin A-like lectins/glucanases
PLCG2	5336	genome.wustl.edu	37	16	81927315	81927315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002661.2	+1	validated	p.Y330H	1.000	24	0%	39	30.8%	2	0%	possibly_damaging(0.81)	deleterious(0)	deleterious(0.750)	HMMPfam_PI-PLC-X,HMMSmart_PLCXc,superfamily_PLC-like_Pdiesterase_TIM-brl
PLCG2	5336	genome.wustl.edu	37	16	81969809	81969809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002661.2	+1	validated	p.E960K	1.000	54	0%	56	46.4%	9	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl
ZCCHC14	23174	genome.wustl.edu	37	16	87445164	87445164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015144.2	-1	validated	p.A918T	1.000	88	0%	44	50%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-CCHC,HMMSmart_SM00343
VPS53	55275	genome.wustl.edu	37	17	602618	602618	+	Silent	SNP	A	A	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001128159.1	-1	reviewed	p.S57	1.000	107	0%	115	37.4%	5	0%	-	-	-	HMMPfam_Vps53_N
RAP1GAP2	23108	genome.wustl.edu	37	17	2901636	2901636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015085.4	+1	reviewed	p.V389A	0.193	35	0%	61	29.5%	3	0%	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
ATP2A3	489	genome.wustl.edu	37	17	3845940	3845940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_174953.1	-1	reviewed	p.R502H	0.558	38	0%	41	31.7%	11	0%	benign(0.339)	deleterious(0.01)	deleterious(0.513)	HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
LOC100288795	100288795	genome.wustl.edu	37	17	4544965	4544965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	XM_002343502.1	+1	model	p.A293T	0.000	23	0%	27	40.7%	0	-	-	-	-	NULL
SLC52A1	55065	genome.wustl.edu	37	17	4937268	4937268	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001104577.1	-1	validated	p.C172	0.999	54	0%	64	46.9%	1	0%	-	-	-	NULL
ARHGEF15	22899	genome.wustl.edu	37	17	8218494	8218494	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_173728.2	+1	reviewed	p.R387*	0.001	21	0%	30	50%	1	0%	-	-	-	NULL
DNAH9	1770	genome.wustl.edu	37	17	11783507	11783507	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001372.3	+1	reviewed	p.K3531*	1.000	107	0%	95	41.1%	1	0%	-	-	-	NULL
MYO15A	51168	genome.wustl.edu	37	17	18060279	18060279	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_016239.3	+1	reviewed	p.Y2871	0.866	16	0%	17	58.8%	1	0%	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
FLII	2314	genome.wustl.edu	37	17	18154692	18154692	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002018.2	-1	reviewed	p.V495fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF55753
KIAA0100	9703	genome.wustl.edu	37	17	26958625	26958625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014680.2	-1	validated	p.V1391I	1.000	58	1.7%	94	35.1%	37	0%	possibly_damaging(0.94)	tolerated(1)	neutral(0.385)	NULL
GGNBP2	79893	genome.wustl.edu	37	17	34945832	34945832	+	Silent	SNP	A	A	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_024835.2	+1	validated	p.G695	1.000	138	0%	124	47.6%	44	0%	-	-	-	NULL
ATP6V0A1	535	genome.wustl.edu	37	17	40630510	40630510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001130020.1	+1	reviewed	p.R186H	1.000	27	0%	58	50%	2	0%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_V_ATPase_I
NAGLU	4669	genome.wustl.edu	37	17	40696161	40696161	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000263.3	+1	reviewed	p.Q713*	0.000	29	0%	28	28.6%	46	0%	-	-	-	HMMPfam_NAGLU
WNK4	65266	genome.wustl.edu	37	17	40936447	40936447	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032387.4	+1	reviewed	p.P340	0.946	31	0%	30	46.7%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
WNK4	65266	genome.wustl.edu	37	17	40940372	40940372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032387.4	+1	reviewed	p.P663S	0.008	89	0%	79	36.7%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
ITGA2B	3674	genome.wustl.edu	37	17	42455762	42455762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000419.3	-1	reviewed	p.A688T	0.937	13	0.000	9	0.556	0	-	benign(0.11)	tolerated(0.1)	neutral(0.295)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
TBX21	30009	genome.wustl.edu	37	17	45820027	45820027	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_013351.1	+1	reviewed	p.S181	1.000	7	0.000	23	0.435	0	-	-	-	-	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
CACNA1G	8913	genome.wustl.edu	37	17	48674220	48674220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018896.3	+1	validated	p.A1065V	0.003	10	0.000	6	0.833	0	-	benign(0.03)	tolerated(0.29)	neutral(0.031)	NULL
CACNA1G	8913	genome.wustl.edu	37	17	48696015	48696015	+	Splice_Site	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018896.3	+1	validated	e33-1	1.000	18	0%	39	38.5%	0	-	-	-	-	-
DGKE	8526	genome.wustl.edu	37	17	54939506	54939506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003647.2	+1	reviewed	p.D473G	1.000	73	0%	95	26.3%	5	0%	benign(0.02)	tolerated(0.21)	neutral(0.045)	HMMPfam_DAGK_acc,HMMSmart_SM00045
PPM1E	22843	genome.wustl.edu	37	17	57033104	57033104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014906.3	+1	reviewed	p.T187A	0.049	72	0%	94	27.7%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
TANC2	26115	genome.wustl.edu	37	17	61498807	61498807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_025185.3	+1	validated	p.E1822K	1.000	138	0%	137	35%	2	0%	possibly_damaging(0.477)	deleterious(0.01)	deleterious(0.563)	NULL
KCNH6	81033	genome.wustl.edu	37	17	61611299	61611299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_030779.2	+1	reviewed	p.R243H	1.000	49	0%	61	44.3%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
ABCA9	10350	genome.wustl.edu	37	17	66982324	66982324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_080283.3	-1	reviewed	p.A1397T	0.007	238	0%	282	38.3%	1	0%	possibly_damaging(0.943)	tolerated(0.16)	neutral(0.447)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
LLGL2	3993	genome.wustl.edu	37	17	73569164	73569164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001031803.1	+1	reviewed	p.R844W	1.000	11	0%	12	41.7%	90	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000173213	0	genome.wustl.edu	37	18	47812	47812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000308911	-1	known	p.P305S	1.000	101	0%	74	35.1%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
PTPN2	5771	genome.wustl.edu	37	18	12817302	12817302	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002828.2	-1	reviewed	p.P186	0.998	234	0%	266	22.9%	31	0%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
C18orf34	374864	genome.wustl.edu	37	18	30928919	30928919	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001105528.1	-1	validated	p.K131T	0.000	74	0%	73	32.9%	0	-	possibly_damaging(0.65)	tolerated(0.34)	neutral(0.251)	NULL
ZNF24	7572	genome.wustl.edu	37	18	32920247	32920247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006965.2	-1	validated	p.A123V	0.997	219	0%	361	42.1%	10	0%	unknown(0)	tolerated(0.53)	-	HMMPfam_SCAN,HMMSmart_SCAN
SETBP1	26040	genome.wustl.edu	37	18	42532629	42532629	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015559.2	+1	validated	p.K1108	0.962	126	0%	135	31.9%	2	0%	-	-	-	NULL
PIAS2	9063	genome.wustl.edu	37	18	44470616	44470616	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004671.2	-1	validated	p.V142	1.000	120	0%	128	36.7%	9	0%	-	-	-	NULL
DCC	1630	genome.wustl.edu	37	18	50734147	50734147	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005215.3	+1	reviewed	p.G607	1.000	131	0%	124	33.1%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
KDSR	2531	genome.wustl.edu	37	18	61002551	61002551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002035.2	-1	reviewed	p.M273T	1.000	83	0%	93	35.5%	24	0%	possibly_damaging(0.437)	deleterious(0.01)	deleterious(0.548)	superfamily_NAD(P)-binding Rossmann-fold domains
DSEL	92126	genome.wustl.edu	37	18	65179085	65179085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032160.2	-1	validated	p.G931S	1.000	177	0%	206	35.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC102B	79839	genome.wustl.edu	37	18	66513554	66513554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001093729.1	+1	validated	p.R278C	0.994	58	0%	44	36.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZADH2	284273	genome.wustl.edu	37	18	72913712	72913712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_175907.4	-1	validated	p.R265C	1.000	82	0%	74	43.2%	22	0%	probably_damaging(0.957)	deleterious(0.03)	deleterious(0.765)	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains
ZNF516	9658	genome.wustl.edu	37	18	74092150	74092150	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000443185	-1	known	p.G640	0.003	124	0%	102	45.1%	6	0%	-	-	-	NULL
TMPRSS9	360200	genome.wustl.edu	37	19	2413784	2413784	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_182973.1	+1	provisional	p.A413	0.005	11	0%	13	30.8%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
PIAS4	51588	genome.wustl.edu	37	19	4013181	4013181	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015897.2	+1	provisional	p.V96	0.124	31	0%	25	32%	14	0%	-	-	-	NULL
MAP2K2	5605	genome.wustl.edu	37	19	4097331	4097331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_030662.3	-1	reviewed	p.M310I	0.941	16	0%	16	62.5%	320	0%	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CATSPERD	257062	genome.wustl.edu	37	19	5776246	5776246	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152784.3	+1	validated	p.G672	0.046	36	0%	43	30.2%	1	0%	-	-	-	NULL
FBN3	84467	genome.wustl.edu	37	19	8206611	8206611	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032447.3	-1	reviewed	p.A285	0.038	34	0%	41	43.9%	0	-	-	-	-	HMMSmart_SM00179,superfamily_TB module/8-cys domain,HMMSmart_SM00181,HMMPfam_EGF_CA
HNRNPM	4670	genome.wustl.edu	37	19	8553590	8553590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005968.3	+1	validated	p.A682V	1.000	77	0%	60	20%	426	0.2%	possibly_damaging(0.928)	tolerated(0.08)	deleterious(0.675)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ZNF560	147741	genome.wustl.edu	37	19	9577576	9577576	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152476.2	-1	validated	p.T683P	0.949	210	0%	269	34.9%	0	-	benign(0.005)	tolerated(1)	-	superfamily_SSF57667
COL5A3	50509	genome.wustl.edu	37	19	10116303	10116303	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015719.3	-1	reviewed	p.G175	0.000	43	0%	56	44.6%	1	0%	-	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
ZNF490	57474	genome.wustl.edu	37	19	12691818	12691818	+	Silent	SNP	G	G	A	rs140333364	by1000genomes	TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020714.2	-1	validated	p.T357	0.926	174	0%	277	32.1%	2	0%	-	-	-	superfamily_SSF57667
WDR83	84292	genome.wustl.edu	37	19	12786478	12786493	+	Frame_Shift_Del	DEL	GCAGGCTGAAGCCAGG	GCAGGCTGAAGCCAGG	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	GCAGGCTGAAGCCAGG	GCAGGCTGAAGCCAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001099737.2	+1	reviewed	p.A314fs	0.000:0.071:0.068:0.916:0.967:0.986:0.965:0.962:0.670	-	-	-	-	-	-	-	-	-	NULL
TNPO2	30000	genome.wustl.edu	37	19	12826518	12826518	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001136196.1	-1	validated	p.L121	1.000	15	0%	16	37.5%	13	0%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
CACNA1A	773	genome.wustl.edu	37	19	13418639	13418639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001127222.1	-1	reviewed	p.T648I	1.000	80	0%	83	39.8%	0	-	possibly_damaging(0.757)	deleterious(0)	deleterious(0.724)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TPM4	7171	genome.wustl.edu	37	19	16212072	16212072	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001145160.1	+1	reviewed	e9-2	1.000	39	0%	53	37.7%	2	0%	-	-	-	-
NWD1	284434	genome.wustl.edu	37	19	16918719	16918719	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001007525.2	+1	validated	p.S1218	0.005	114	0%	167	28.7%	2	0%	-	-	-	superfamily_WD40 repeat-like
NDUFA13	51079	genome.wustl.edu	37	19	19638931	19638931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015965.6	+1	reviewed	p.T227M	0.000	11	0%	13	53.8%	1257	0%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
ZNF253	56242	genome.wustl.edu	37	19	20003485	20003485	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_021047.2	+1	provisional	p.R477*	0.000	147	0%	238	23.5%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
GPATCH1	55094	genome.wustl.edu	37	19	33581756	33581756	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018025.2	+1	provisional	p.D93E	0.969	41	0%	51	31.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1604
U2AF1L4	199746	genome.wustl.edu	37	19	36233612	36233612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_144987.2	-1	validated	p.A166T	0.000	17	0%	26	50%	21	0%	possibly_damaging(0.507)	deleterious(0)	deleterious(0.614)	NULL
RYR1	6261	genome.wustl.edu	37	19	38997112	38997112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000540.2	+1	reviewed	p.A2873D	1.000	66	0%	84	16.7%	0	-	probably_damaging(0.987)	-	-	HMMPfam_RyR
PLEKHG2	64857	genome.wustl.edu	37	19	39915767	39915767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_022835.2	+1	validated	p.R1332W	0.997	19	0%	18	61.1%	6	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EGLN2	112398	genome.wustl.edu	37	19	41312523	41312523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_053046.2	+1	reviewed	p.G303S	1.000	121	0%	126	42.1%	87	0%	benign(0.124)	tolerated(0.1)	neutral(0.296)	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702
ATP5SL	55101	genome.wustl.edu	37	19	41939292	41939292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018035.2	-1	validated	p.V161M	0.410	51	2%	57	43.9%	35	0%	benign(0.223)	deleterious(0.02)	neutral(0.405)	superfamily_RNI-like
ATP1A3	478	genome.wustl.edu	37	19	42471835	42471835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152296.3	-1	reviewed	p.A967V	1.000	13	0%	25	36%	0	-	possibly_damaging(0.703)	tolerated(0.4)	neutral(0.269)	HMMPfam_Cation_ATPase_C,superfamily_SSF81665
ATP1A3	478	genome.wustl.edu	37	19	42486128	42486128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152296.3	-1	reviewed	p.R375H	1.000	172	0%	123	35.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
MEGF8	1954	genome.wustl.edu	37	19	42853851	42853851	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001410.2	+1	validated	p.S766	0.916	35	0%	50	40%	1	0%	-	-	-	NULL
KCNA7	3743	genome.wustl.edu	37	19	49573636	49573636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_031886.2	-1	reviewed	p.A352V	1.000	36	0%	18	50%	0	-	possibly_damaging(0.809)	tolerated(0.09)	deleterious(0.601)	HMMPfam_Ion_trans,superfamily_SSF81324
TEAD2	8463	genome.wustl.edu	37	19	49844674	49844674	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003598.1	-1	provisional	p.T417	0.983	47	0%	52	36.5%	132	0%	-	-	-	HMMPfam_TEA
MYBPC2	4606	genome.wustl.edu	37	19	50940775	50940775	+	Missense_Mutation	SNP	G	G	A	rs138764172	by1000genomes	TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004533.3	+1	validated	p.R170H	0.967	33	0%	37	40.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SIGLEC8	27181	genome.wustl.edu	37	19	51960897	51960897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014442.2	-1	validated	p.G184E	0.010	90	0%	90	32.2%	0	-	possibly_damaging(0.855)	tolerated(0.16)	neutral(0.390)	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
PRKCG	5582	genome.wustl.edu	37	19	54403513	54403513	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002739.3	+1	reviewed	p.Y436	0.977	97	0%	84	32.1%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TSEN34	79042	genome.wustl.edu	37	19	54695637	54695637	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001077446.2	+1	reviewed	p.E103	1.000	76	0%	111	43.2%	65	0%	-	-	-	NULL
ZNF628	89887	genome.wustl.edu	37	19	55992996	55992996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_033113.2	+1	validated	p.R142C	1.000	54	0%	20	30%	4	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_C2H2 and C2HC zinc fingers
DEFB129	140881	genome.wustl.edu	37	20	210074	210074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_080831.2	+1	validated	p.P72S	0.000	134	0%	215	37.7%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
ProSAPiP1	9762	genome.wustl.edu	37	20	3146538	3146538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014731.2	-1	validated	p.A310T	0.998	8	0.000	10	0.600	7	0%	benign(0.264)	tolerated(0.67)	neutral(0.030)	NULL
TTLL9	164395	genome.wustl.edu	37	20	30530758	30530758	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000375922	+1	known	p.R319*	0.855	192	0%	204	37.7%	1	0%	-	-	-	NULL
AHCY	191	genome.wustl.edu	37	20	32883218	32883218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000687.2	-1	reviewed	p.V68I	0.195	18	0%	25	36%	91	0%	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_AdoHcyase,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
MMP24	10893	genome.wustl.edu	37	20	33842487	33842487	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006690.3	+1	reviewed	p.G249	0.999	239	0%	261	34.9%	0	-	-	-	-	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
RBM39	9584	genome.wustl.edu	37	20	34302145	34302145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_184234.1	-1	reviewed	p.T353I	1.000	113	0%	181	42%	238	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SLC32A1	140679	genome.wustl.edu	37	20	37356575	37356575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_080552.2	+1	reviewed	p.D291N	1.000	43	0%	19	36.8%	0	-	benign(0.019)	tolerated(0.1)	neutral(0.287)	HMMPfam_Aa_trans
ENSG00000245952	0	genome.wustl.edu	37	20	47275800	47275801	+	RNA	INS	-	-	AGGAAGGAAGGAAGGAAGGG	rs73142202	by1000genomes	TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000456747	+1	known	NULL	0.000:0.000	-	-	-	-	-	-	-	-	-	-
PARD6B	84612	genome.wustl.edu	37	20	49354524	49354524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032521.2	+1	reviewed	p.H66R	1.000	73	0%	118	34.7%	2	0%	probably_damaging(0.999)	tolerated(0.29)	deleterious(0.519)	HMMPfam_PB1,HMMSmart_PB1
ZFP64	55734	genome.wustl.edu	37	20	50769149	50769149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018197.2	-1	validated	p.A528T	0.166	23	0%	37	48.6%	17	0%	possibly_damaging(0.797)	deleterious(0.02)	deleterious(0.682)	NULL
TAF4	6874	genome.wustl.edu	37	20	60584156	60584156	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_003185.3	-1	reviewed	p.Q612	1.000	82	0%	80	32.5%	6	0%	-	-	-	HMMPfam_TAFH,HMMSmart_TAFH
C20orf166	128826	genome.wustl.edu	37	20	61167675	61167675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_178463.3	+1	validated	p.H49Y	0.000	19	0%	21	23.8%	0	-	unknown(0)	-	-	NULL
PCMTD2	55251	genome.wustl.edu	37	20	62904848	62904848	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_018257.2	+1	validated	p.P327	0.000	162	0%	250	44%	26	0%	-	-	-	NULL
KRTAP6-2	337967	genome.wustl.edu	37	21	31971025	31971025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_181604.1	-1	validated	p.G57S	0.473	84	0%	109	45%	0	-	unknown(0)	-	-	NULL
LCA5L	150082	genome.wustl.edu	37	21	40800415	40800415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152505.3	-1	validated	p.S2Y	1.000	97	0%	140	39.3%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
DSCAM	1826	genome.wustl.edu	37	21	41550907	41550907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001389.3	-1	validated	p.R965Q	1.000	35	0%	44	36.4%	0	-	benign(0.004)	tolerated(0.42)	neutral(0.014)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
KRTAP10-9	386676	genome.wustl.edu	37	21	46047252	46047252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_198690.2	+1	validated	p.S55N	0.899	81	0%	92	37%	0	-	unknown(0)	deleterious(0.01)	-	HMMPfam_Keratin_B2
LSS	4047	genome.wustl.edu	37	21	47611102	47611102	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001001438.2	-1	reviewed	p.T705	0.000	38	0%	25	28%	18	0%	-	-	-	superfamily_Terp_cyc_toroid
CCT8L2	150160	genome.wustl.edu	37	22	17072284	17072284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014406.4	-1	validated	p.R386Q	0.086	88	0%	59	30.5%	0	-	benign(0.203)	deleterious(0.01)	neutral(0.425)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
CECR5	27440	genome.wustl.edu	37	22	17619488	17619488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_033070.2	-1	validated	p.A296V	0.989	253	0%	190	31.1%	62	0%	benign(0.199)	tolerated(0.11)	neutral(0.291)	superfamily_HAD-like
CLTCL1	8218	genome.wustl.edu	37	22	19178912	19178912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_007098.3	-1	reviewed	p.Q1409H	0.998	50	0%	38	23.7%	1	0%	benign(0.108)	tolerated(0.25)	neutral(0.045)	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
MED15	51586	genome.wustl.edu	37	22	20905620	20905620	+	Missense_Mutation	SNP	A	A	C	rs116430800	byFrequency;by1000genomes	TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000420849	+1	known	p.M1L	0.000	28	0%	41	56.1%	0	-	unknown(0)	-	-	NULL
LZTR1	8216	genome.wustl.edu	37	22	21350071	21350071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006767.3	+1	reviewed	p.E660G	1.000	37	0%	18	44.4%	16	0%	possibly_damaging(0.561)	deleterious(0.04)	deleterious(0.540)	superfamily_POZ domain,HMMPfam_BTB
SLC2A11	66035	genome.wustl.edu	37	22	24226963	24226963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_030807.3	+1	validated	p.R480I	1.000	102	0%	105	28.6%	2	0%	benign(0.208)	deleterious(0)	neutral(0.465)	NULL
XBP1	7494	genome.wustl.edu	37	22	29191690	29191690	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001079539.1	-1	reviewed	p.L202V	1.000	159	0%	154	34.4%	841	0%	possibly_damaging(0.653)	deleterious(0.02)	deleterious(0.613)	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32234732	32234732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014662.2	+1	validated	p.R797C	1.000	143	0%	157	38.9%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZBED4	9889	genome.wustl.edu	37	22	50279861	50279861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_014838.2	+1	validated	p.S851C	0.997	24	0%	25	36%	17	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ENSG00000211459	0	genome.wustl.edu	37	MT	1552	1552	+	RNA	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000389680	+1	known	NULL	NULL	33	0%	23	21.7%	572	0.3%	-	-	-	-
AKAP17A	8227	genome.wustl.edu	37	X	1712692	1712692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005088.2	+1	validated	p.R113C	0.979	36	0%	70	35.7%	31	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KAL1	3730	genome.wustl.edu	37	X	8667763	8667763	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000216.2	-1	reviewed	p.C77	1.000	57	0%	56	32.1%	0	-	-	-	-	NULL
WWC3	55841	genome.wustl.edu	37	X	10058845	10058845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015691.3	+1	validated	p.Y138H	1.000	75	0%	96	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WWC3	55841	genome.wustl.edu	37	X	10104689	10104689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015691.3	+1	validated	p.S927N	1.000	150	0%	154	35.7%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GRPR	2925	genome.wustl.edu	37	X	16168542	16168542	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005314.2	+1	reviewed	p.A176	0.865	189	0%	273	22.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PHKA2	5256	genome.wustl.edu	37	X	18912471	18912471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000292.2	-1	reviewed	p.R1130C	1.000	27	0%	26	38.5%	15	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PHK_AB
RPS6KA3	6197	genome.wustl.edu	37	X	20222141	20222141	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004586.2	-1	reviewed	p.V109fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MBTPS2	51360	genome.wustl.edu	37	X	21871536	21871536	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015884.3	+1	reviewed	p.I195	1.000	104	0%	200	40.5%	2	0%	-	-	-	HMMPfam_Peptidase_M50
DCAF8L2	347442	genome.wustl.edu	37	X	27766221	27766221	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001136533.1	+1	provisional	p.E403	0.091	105	0%	188	35.6%	0	-	-	-	-	superfamily_WD40 repeat-like
DCAF8L1	139425	genome.wustl.edu	37	X	27997795	27997795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001017930.1	-1	reviewed	p.R553C	0.224	224	0%	285	29.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MAGEB3	4114	genome.wustl.edu	37	X	30255006	30255006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_002365.4	+1	reviewed	p.A322D	0.000	70	0%	83	42.2%	0	-	benign(0.013)	deleterious(0.02)	neutral(0.384)	NULL
DMD	1756	genome.wustl.edu	37	X	31496309	31496309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004006.2	-1	reviewed	p.R2951C	0.916	75	0%	79	38%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SRPX	8406	genome.wustl.edu	37	X	38037572	38037572	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006307.4	-1	validated	p.D41	0.931	56	0%	74	44.6%	0	-	-	-	-	NULL
CXorf38	159013	genome.wustl.edu	37	X	40506317	40506317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_144970.2	-1	validated	p.V98A	0.418	20	0%	22	72.7%	3	0%	possibly_damaging(0.631)	tolerated(0.08)	deleterious(0.520)	NULL
USP9X	8239	genome.wustl.edu	37	X	41043909	41043910	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001039590.2	+1	reviewed	p.V1181fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PHF16	9767	genome.wustl.edu	37	X	46918111	46918111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001077445.1	+1	reviewed	p.G702S	0.989	101	0%	74	13.5%	2	0%	benign(0.001)	tolerated(0.82)	neutral(0.001)	NULL
MIR188	406964	genome.wustl.edu	37	X	49768186	49768186	+	RNA	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	ENST00000385034	+1	known	NULL	1.000	25	0%	28	21.4%	0	-	-	-	-	-
CLCN5	1184	genome.wustl.edu	37	X	49855336	49855336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001127898.1	+1	reviewed	p.R718Q	1.000	112	0%	90	30%	5	0%	possibly_damaging(0.925)	tolerated(0.08)	deleterious(0.673)	HMMPfam_CBS
TRO	7216	genome.wustl.edu	37	X	54949838	54949838	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001039705.1	+1	reviewed	p.S291	0.112	58	0%	58	37.9%	0	-	-	-	-	NULL
RRAGB	10325	genome.wustl.edu	37	X	55755741	55755741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_016656.3	+1	validated	p.S109P	1.000	169	0%	225	40%	4	0%	benign(0.115)	deleterious(0)	neutral(0.454)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ARHGEF9	23229	genome.wustl.edu	37	X	62898285	62898285	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_015185.2	-1	reviewed	p.V243	0.796	29	0%	47	38.3%	9	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
FAM123B	139285	genome.wustl.edu	37	X	63412041	63412041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_152424.3	-1	reviewed	p.D376N	1.000	313	0%	306	35.3%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_WTX
SLC7A3	84889	genome.wustl.edu	37	X	70148477	70148477	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001048164.2	-1	reviewed	p.L179*	1.000	40	0%	57	35.1%	2	0%	-	-	-	NULL
TAF1	6872	genome.wustl.edu	37	X	70617241	70617241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_004606.3	+1	reviewed	p.R1202H	1.000	172	0%	181	32%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACRC	93953	genome.wustl.edu	37	X	70830621	70830621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_052957.4	+1	validated	p.R568W	0.000	95	0%	97	27.8%	0	-	possibly_damaging(0.902)	deleterious(0.01)	deleterious(0.762)	HMMSmart_SM00731,HMMPfam_SprT-like
NHSL2	340527	genome.wustl.edu	37	X	71358888	71358888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001013627.2	+1	provisional	p.R131Q	1.000	32	0%	28	50%	1	0%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
BRWD3	254065	genome.wustl.edu	37	X	79979255	79979255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_153252.4	-1	reviewed	p.Y548H	1.000	65	0%	60	35%	1	0%	probably_damaging(0.978)	tolerated(0.07)	deleterious(0.740)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
PCDH11X	27328	genome.wustl.edu	37	X	91873846	91873846	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_032968.3	+1	reviewed	p.S1317	0.988	287	0%	326	37.7%	0	-	-	-	-	NULL
DIAPH2	1730	genome.wustl.edu	37	X	96185755	96185755	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006729.4	+1	reviewed	p.N334	1.000	106	0%	118	26.3%	0	-	-	-	-	HMMPfam_Drf_FH3
PCDH19	57526	genome.wustl.edu	37	X	99551653	99551653	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001105243.1	-1	reviewed	p.S976	0.103	126	0%	146	32.9%	0	-	-	-	-	NULL
CENPI	2491	genome.wustl.edu	37	X	100382163	100382163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_006733.2	+1	reviewed	p.A272T	0.454	76	0%	120	42.5%	3	0%	benign(0.066)	tolerated(0.4)	neutral(0.021)	HMMPfam_Mis6
DOCK11	139818	genome.wustl.edu	37	X	117783058	117783058	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_144658.3	+1	validated	p.K1517Q	1.000	245	0%	249	33.3%	2	0%	benign(0.02)	deleterious(0.02)	neutral(0.384)	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118222955	118222955	+	Missense_Mutation	SNP	C	C	A	rs192473734	by1000genomes	TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_020721.1	-1	validated	p.L746F	0.000	160	0%	117	39.3%	0	-	possibly_damaging(0.435)	tolerated(0.16)	neutral(0.201)	NULL
XIAP	331	genome.wustl.edu	37	X	123020210	123020210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_001167.2	+1	reviewed	p.R233Q	1.000	125	0%	114	41.2%	2	0%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	superfamily_SSF57924
DCAF12L1	139170	genome.wustl.edu	37	X	125686089	125686089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_178470.4	-1	reviewed	p.G168D	0.998	30	0%	27	25.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
MAGEC3	139081	genome.wustl.edu	37	X	140967125	140967125	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_138702.1	+1	reviewed	p.S141	0.004	12	0%	20	35%	0	-	-	-	-	NULL
MAGEA3	4102	genome.wustl.edu	37	X	151935711	151935711	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_005362.3	-1	reviewed	p.S152	0.000	182	0%	199	31.7%	0	-	-	-	-	HMMPfam_MAGE
TREX2	11219	genome.wustl.edu	37	X	152710723	152710723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_080701.3	-1	reviewed	p.V56I	0.989	11	0%	10	70%	2	0%	benign(0.384)	tolerated(0.27)	neutral(0.156)	HMMSmart_EXOIII,superfamily_RNaseH_fold,HMMPfam_Exonuc_X-T
L1CAM	3897	genome.wustl.edu	37	X	153129848	153129848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JR-01A-13W-A062-09	TCGA-B5-A0JR-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a29c8bdb-d830-4e70-b8c1-eeac0d039c50	4cb71b4a-e29c-4ed2-98bf-dee2d53f6cc2	NM_000425.3	-1	reviewed	p.T1084I	0.380	44	0%	56	26.8%	0	-	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	superfamily_Fibronectin type III
