Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ARID1A	8289	genome.wustl.edu	37	1	27106533	27106533	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_006015.4	+1	reviewed	p.W2048*	1.000	162	0%	254	42.5%	-	-	-	-	-	NULL
KDM5B	10765	genome.wustl.edu	37	1	202709850	202709850	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_006618.3	-1	validated	p.D1012	1.000	54	0%	157	52.2%	-	-	-	-	-	HMMPfam_PLU-1
MYT1L	23040	genome.wustl.edu	37	2	1893246	1893246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_015025.2	-1	validated	p.P761T	1.000	26	0%	56	30.4%	-	-	probably_damaging(0.991)	tolerated(0.27)	deleterious(0.478)	HMMPfam_MYT1
TTC31	64427	genome.wustl.edu	37	2	74719492	74719492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_022492.4	+1	validated	p.D361N	0.997	70	0%	96	35.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00028,superfamily_TPR-like
CTNNB1	1499	genome.wustl.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	G	rs121913403	byCluster	TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_001098209.1	+1	reviewed	p.S37C	1.000	78	0%	133	32.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NAALADL2	254827	genome.wustl.edu	37	3	174814723	174814723	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_207015.2	+1	validated	p.Q63*	1.000	112	0%	133	35.3%	-	-	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	rs121913284		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_006218.2	+1	reviewed	p.N345K	1.000	132	0%	146	32.2%	-	-	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
FAT4	79633	genome.wustl.edu	37	4	126370947	126370947	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_024582.4	+1	validated	p.E2926*	1.000	142	0%	152	27.6%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB4	56131	genome.wustl.edu	37	5	140503755	140503755	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_018938.2	+1	reviewed	p.S725	0.000	121	0%	134	38.1%	-	-	-	-	-	NULL
ZFAND3	60685	genome.wustl.edu	37	6	38084517	38084517	+	Splice_Site	SNP	T	T	G	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_021943.2	+1	validated	e5+2	1.000	149	0%	169	42%	-	-	-	-	-	-
POM121L12	285877	genome.wustl.edu	37	7	53103801	53103801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_182595.3	+1	validated	p.R146H	0.000	31	0%	49	46.9%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ENSG00000215179	0	genome.wustl.edu	37	8	47885721	47885721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	ENST00000399732	-1	known	p.R171Q	1.000	118	0%	121	38.8%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RAB2A	5862	genome.wustl.edu	37	8	61504446	61504448	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_002865.1	+1	provisional	p.E133in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
HRCT1	646962	genome.wustl.edu	37	9	35906583	35906584	+	In_Frame_Ins	INS	-	-	CCA	rs112821450		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_001039792.1	+1	validated	p.104in_frame_insH	0.120:0.016	-	-	-	-	-	-	-	-	-	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79324729	79324729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_015225.2	-1	validated	p.T821A	0.000	55	0%	53	37.7%	-	-	benign(0.067)	tolerated(0.06)	neutral(0.327)	NULL
C14orf126	112487	genome.wustl.edu	37	14	31917516	31917516	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_080664.2	-1	validated	p.N109I	1.000	251	0.4%	339	32.4%	-	-	probably_damaging(0.969)	deleterious(0.03)	deleterious(0.776)	HMMPfam_Tyr_Deacylase,superfamily_DTyrtRNA_deacyls
C15orf55	256646	genome.wustl.edu	37	15	34647708	34647708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_175741.1	+1	validated	p.M472T	0.824	85	0%	117	28.2%	-	-	benign(0.003)	deleterious(0.03)	neutral(0.364)	NULL
SGK269	79834	genome.wustl.edu	37	15	77471930	77471930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_024776.2	-1	validated	p.P780L	1.000	137	0%	200	34.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NAGPA	51172	genome.wustl.edu	37	16	5075659	5075659	+	Silent	SNP	C	C	T	rs185563042	by1000genomes	TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_016256.2	-1	reviewed	p.A456	0.959	20	0%	23	39.1%	-	-	-	-	-	NULL
SPOP	8405	genome.wustl.edu	37	17	47699360	47699360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_001007226.1	-1	reviewed	p.E50K	1.000	225	0%	244	27%	-	-	benign(0.22)	deleterious(0.05)	neutral(0.367)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
CARM1	10498	genome.wustl.edu	37	19	11032431	11032431	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_199141.1	+1	validated	p.*609Q	1.000	28	0%	42	38.1%	-	-	-	-	-	NULL
TMEM145	284339	genome.wustl.edu	37	19	42822020	42822020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_173633.2	+1	validated	p.A354T	1.000	77	0%	155	36.1%	-	-	benign(0.076)	tolerated(0.15)	neutral(0.246)	HMMPfam_GpcrRhopsn4
YBEY	54059	genome.wustl.edu	37	21	47707039	47707040	+	Splice_Site	INS	-	-	AAAAAA	rs71318058	byCluster;by1000genomes	TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_058181.1	+1	validated	e1+2	1.000:0.124	-	-	-	-	-	-	-	-	-	-
TBC1D10A	83874	genome.wustl.edu	37	22	30695512	30695512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	NM_031937.1	-1	provisional	p.P113L	1.000	37	0%	31	51.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
ENSG00000198888	0	genome.wustl.edu	37	MT	3421	3421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K0-01A-11W-A062-09	TCGA-B5-A0K0-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f01c66a3-b510-46c9-839d-5f544a28ee37	02e65074-ffda-4795-b8f5-1bfd20bd1019	ENST00000361390	+1	known	p.V39I	NULL	30	0%	58	15.5%	-	-	benign(0.001)	tolerated(1)	-	HMMPfam_NADHdh
