Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
RPL22	6146	ucsc.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000983.3	-1	reviewed	p.K15fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
RNF207	388591	genome.wustl.edu	37	1	6269243	6269243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_207396.2	+1	validated	p.R180C	1.000	8	0.000	23	0.261	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_B-box zinc-binding domain
SLC25A33	84275	genome.wustl.edu	37	1	9640106	9640106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_032315.2	+1	validated	p.S193P	1.000	297	0%	355	27.6%	15	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
ANGPTL7	10218	genome.wustl.edu	37	1	11249707	11249707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_021146.2	+1	provisional	p.A24V	0.476	57	0%	90	34.4%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
PTCHD2	57540	genome.wustl.edu	37	1	11579857	11579857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_020780.1	+1	validated	p.G707D	0.999	37	0%	45	24.4%	3	0%	benign(0.091)	deleterious(0.02)	neutral(0.390)	HMMPfam_Patched
PTCHD2	57540	genome.wustl.edu	37	1	11595586	11595586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_020780.1	+1	validated	p.G1234V	1.000	20	0%	40	30%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
ARHGEF10L	55160	genome.wustl.edu	37	1	17982383	17982383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018125.3	+1	validated	p.G831R	0.946	41	0%	70	11.4%	13	0%	benign(0.002)	tolerated(0.21)	neutral(0.044)	NULL
MUL1	79594	genome.wustl.edu	37	1	20827664	20827664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024544.2	-1	validated	p.A193V	1.000	63	0%	61	39.3%	36	41.6%	benign(0.224)	tolerated(0.06)	neutral(0.345)	NULL
ASAP3	55616	genome.wustl.edu	37	1	23769086	23769086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_017707.3	-1	reviewed	p.R165C	0.999	116	0%	159	30.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1522	57648	genome.wustl.edu	37	1	33235619	33235619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_020888.2	+1	validated	p.A280V	0.462	11	0%	12	50%	63	41.2%	possibly_damaging(0.888)	-	-	NULL
MAP7D1	55700	genome.wustl.edu	37	1	36636621	36636621	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018067.3	+1	provisional	p.D32	1.000	31	0%	76	22.4%	25	20%	-	-	-	NULL
SNIP1	79753	genome.wustl.edu	37	1	38005964	38005964	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024700.2	-1	provisional	p.R240	1.000	152	0%	169	34.9%	12	50%	-	-	-	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42048157	42048157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024503.3	-1	validated	p.T771M	0.000	54	0%	60	43.3%	2	0%	benign(0.003)	tolerated(0.15)	neutral(0.241)	NULL
MED8	112950	genome.wustl.edu	37	1	43853172	43853172	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_052877.3	-1	reviewed	e3+2	1.000	364	0%	355	40.6%	0	-	-	-	-	-
IPO13	9670	genome.wustl.edu	37	1	44433133	44433133	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014652.3	+1	reviewed	p.P920	0.515	48	0%	61	36.1%	94	45.7%	-	-	-	NULL
ZYG11A	440590	genome.wustl.edu	37	1	53308609	53308609	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000371528	+1	known	p.D18	0.153	21	0%	56	17.9%	0	-	-	-	-	NULL
JAK1	3716	genome.wustl.edu	37	1	65305333	65305333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002227.2	-1	reviewed	p.L932R	1.000	646	0%	561	32.4%	24	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
ZRANB2	9406	genome.wustl.edu	37	1	71542541	71542541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_203350.1	-1	validated	p.A80T	1.000	412	0%	353	38%	33	39.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_Znf265 first zinc-finger domain
F3	2152	genome.wustl.edu	37	1	94996100	94996100	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000370207	-1	known	p.S215*	0.022	317	0%	315	11.4%	83	24%	-	-	-	NULL
CELSR2	1952	genome.wustl.edu	37	1	109793252	109793252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001408.2	+1	reviewed	p.P184L	1.000	98	0%	170	35.9%	14	42.8%	probably_damaging(0.979)	tolerated(0.23)	neutral(0.463)	superfamily_Cadherin
MAGI3	260425	genome.wustl.edu	37	1	114201819	114201819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001142782.1	+1	validated	p.H916R	1.000	233	0%	255	32.5%	5	60%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
CSDE1	7812	genome.wustl.edu	37	1	115260812	115260812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001130523.1	-1	validated	p.R807H	1.000	282	0%	287	28.6%	422	40.5%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	NULL
PIAS3	10401	genome.wustl.edu	37	1	145584028	145584028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_006099.3	+1	reviewed	p.P420L	0.987	232	0%	246	32.5%	44	34%	benign(0.025)	deleterious(0.02)	neutral(0.384)	NULL
GJA5	2702	genome.wustl.edu	37	1	147230417	147230417	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_005266.5	-1	reviewed	p.E310D	0.003	436	0%	387	35.9%	9	0%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
VPS72	6944	genome.wustl.edu	37	1	151149369	151149369	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_005997.1	-1	provisional	p.R282	0.006	68	0%	88	18.2%	96	22.9%	-	-	-	NULL
RAB13	5872	genome.wustl.edu	37	1	153958628	153958628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002870.2	-1	provisional	p.A29T	1.000	185	0%	260	30%	80	43.7%	benign(0.001)	tolerated(0.07)	neutral(0.319)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
IGSF9	57549	genome.wustl.edu	37	1	159901336	159901336	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001135050.1	-1	validated	p.R474*	1.000	39	0%	50	40%	3	33.3%	-	-	-	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
ARHGAP30	257106	genome.wustl.edu	37	1	161019369	161019371	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001025598.1	-1	validated	p.F510in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CDC73	79577	genome.wustl.edu	37	1	193111145	193111146	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024529.4	+1	reviewed	p.V229fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CFH	3075	genome.wustl.edu	37	1	196706714	196706714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000186.3	+1	reviewed	p.E902D	0.012	328	0%	223	34.1%	3	0%	benign(0.019)	tolerated(0.95)	neutral(0.001)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ASPM	259266	genome.wustl.edu	37	1	197057452	197057452	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018136.4	-1	reviewed	p.G3365	0.856	249	0%	157	33.8%	8	62.5%	-	-	-	NULL
LHX9	56956	genome.wustl.edu	37	1	197889148	197889148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_020204.2	+1	reviewed	p.C74Y	1.000	35	0%	60	15%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ATP2B4	493	genome.wustl.edu	37	1	203670029	203670029	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001684.3	+1	reviewed	p.D293	0.006	304	0%	315	36.5%	18	55.5%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
PTPN14	5784	genome.wustl.edu	37	1	214560201	214560201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_005401.4	-1	reviewed	p.T351M	0.996	219	0%	219	10%	3	33.3%	probably_damaging(0.997)	tolerated(0.23)	deleterious(0.508)	superfamily_SSF50729
DUSP10	11221	genome.wustl.edu	37	1	221879739	221879739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_007207.3	-1	reviewed	p.R294Q	1.000	64	0%	86	32.6%	16	56.2%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
PRSS38	339501	genome.wustl.edu	37	1	228003870	228003870	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_183062.2	+1	validated	p.S76	0.259	23	0%	33	54.5%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
KIAA1804	84451	genome.wustl.edu	37	1	233515137	233515137	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_032435.2	+1	validated	p.L795	0.000	120	0%	105	31.4%	7	42.8%	-	-	-	NULL
HEATR1	55127	genome.wustl.edu	37	1	236746393	236746393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018072.4	-1	validated	p.A782V	0.003	246	0%	199	37.2%	4	75%	benign(0)	tolerated(0.87)	neutral(0.001)	NULL
FMN2	56776	genome.wustl.edu	37	1	240256817	240256817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_020066.4	+1	validated	p.R470W	0.742	22	0%	28	25%	0	-	unknown(0)	deleterious(0)	-	NULL
TP53I3	9540	genome.wustl.edu	37	2	24303662	24303662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000413037	-1	known	p.R211G	0.978	106	0%	88	14.8%	4	25%	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
ADD2	119	genome.wustl.edu	37	2	70918057	70918057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001617.3	-1	reviewed	p.S237L	1.000	93	1.1%	83	31.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase
MPHOSPH10	10199	genome.wustl.edu	37	2	71360483	71360483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_005791.1	+1	reviewed	p.Q182R	0.971	354	0%	277	36.1%	24	70.8%	benign(0.001)	tolerated(0.46)	neutral(0.012)	HMMPfam_Mpp10
DNAH6	1768	genome.wustl.edu	37	2	85012776	85012776	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001370.1	+1	validated	p.R3666*	0.997	335	0%	289	33.2%	4	0%	-	-	-	HMMPfam_Dynein_heavy
RGPD3	653489	genome.wustl.edu	37	2	107040695	107040695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001144013.1	-1	validated	p.T1243N	0.889	202	0%	162	9.9%	7	0%	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	NULL
STEAP3	55240	genome.wustl.edu	37	2	120003399	120003399	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_182915.2	+1	validated	p.K119	1.000	137	0%	174	35.6%	23	65.2%	-	-	-	HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains
SAP130	79595	genome.wustl.edu	37	2	128712714	128712714	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024545.3	-1	validated	p.A747	0.023	465	0%	552	38.4%	46	50%	-	-	-	NULL
ORC4	5000	genome.wustl.edu	37	2	148696725	148696725	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002552.2	-1	reviewed	p.K314	1.000	488	0%	402	34.6%	47	46.8%	-	-	-	NULL
STAM2	10254	genome.wustl.edu	37	2	153003756	153003756	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_005843.4	-1	reviewed	p.D123H	1.000	297	0%	258	35.7%	10	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288
NFE2L2	4780	genome.wustl.edu	37	2	178098806	178098806	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_006164.3	-1	validated	p.T80R	1.000	560	0%	507	36.9%	57	26.3%	possibly_damaging(0.67)	deleterious(0)	deleterious(0.682)	NULL
TTN	7273	genome.wustl.edu	37	2	179431261	179431261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000356127	-1	known	p.E23963G	1.000	248	0%	204	31.9%	0	-	possibly_damaging(0.806)	-	-	HMMPfam_fn3,HMMSmart_SM00060
MFSD6	54842	genome.wustl.edu	37	2	191301029	191301029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_017694.3	+1	validated	p.Y92H	1.000	157	0%	124	18.5%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ALS2	57679	genome.wustl.edu	37	2	202593272	202593273	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_020919.3	-1	reviewed	p.W935fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_PH domain-like
NYAP2	57624	genome.wustl.edu	37	2	226378217	226378217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_020864.1	+1	validated	p.S118P	1.000	96	0%	119	36.1%	3	33.3%	probably_damaging(0.98)	tolerated(0.08)	deleterious(0.724)	NULL
ALPPL2	251	genome.wustl.edu	37	2	233272616	233272616	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_031313.2	+1	reviewed	p.Y179	0.993	22	0%	44	38.6%	336	38.6%	-	-	-	HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core
THUMPD3	25917	genome.wustl.edu	37	3	9425985	9425987	+	In_Frame_Del	DEL	TAC	TAC	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	TAC	TAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001114092.1	+1	validated	p.L444in_frame_del	0.835:0.005:0.935	-	-	-	-	-	-	-	-	-	HMMPfam_UPF0020,superfamily_SSF53335
GOLGA4	2803	genome.wustl.edu	37	3	37323450	37323450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002078.4	+1	reviewed	p.S55L	1.000	106	0%	93	22.6%	9	33.3%	possibly_damaging(0.662)	deleterious(0.02)	deleterious(0.617)	NULL
DLEC1	9940	genome.wustl.edu	37	3	38151053	38151053	+	Missense_Mutation	SNP	G	G	T	rs141902795	by1000genomes	TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_007337.2	+1	reviewed	p.S1087I	1.000	146	0%	197	29.4%	1	100%	probably_damaging(0.962)	tolerated(0.19)	neutral(0.455)	NULL
LARS2	23395	genome.wustl.edu	37	3	45557631	45557631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015340.3	+1	reviewed	p.T636M	0.998	429	0%	419	32.7%	14	42.8%	benign(0.094)	tolerated(0.28)	neutral(0.038)	superfamily_SSF52374
COL7A1	1294	genome.wustl.edu	37	3	48623615	48623615	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000094.3	-1	reviewed	p.P1205	0.003	27	0%	48	45.8%	6	16.6%	-	-	-	HMMPfam_VWA,superfamily_vWA-like
DCBLD2	131566	genome.wustl.edu	37	3	98530395	98530395	+	Missense_Mutation	SNP	C	C	T	rs186169797	by1000genomes	TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_080927.3	-1	validated	p.R456H	1.000	604	0.2%	420	39.3%	32	65.6%	benign(0.292)	deleterious(0.01)	deleterious(0.496)	NULL
TBC1D23	55773	genome.wustl.edu	37	3	100021057	100021057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018309.2	+1	validated	p.N413K	1.000	256	0.4%	240	36.7%	15	20%	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	superfamily_Rhodanese/Cell cycle control phosphatase
BBX	56987	genome.wustl.edu	37	3	107520039	107520039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000416476	+1	known	p.R547H	0.000	187	0%	155	31%	13	46.1%	unknown(0)	-	-	NULL
C3orf17	25871	genome.wustl.edu	37	3	112738420	112738420	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015412.3	-1	validated	p.V26fs	0.000	-	-	-	-	-	-	-	-	-	NULL
EEFSEC	60678	genome.wustl.edu	37	3	128060156	128060156	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_021937.3	+1	validated	p.C289	0.900	60	0%	99	12.1%	23	8.6%	-	-	-	HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins
RAB7A	7879	genome.wustl.edu	37	3	128525227	128525227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_004637.5	+1	reviewed	p.A65T	1.000	241	0%	247	10.5%	269	5.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
TBL1XR1	79718	genome.wustl.edu	37	3	176768330	176768330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024665.4	-1	reviewed	p.R166W	1.000	324	0%	313	32.3%	24	33.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
CCDC39	339829	genome.wustl.edu	37	3	180379669	180379669	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_181426.1	-1	validated	p.E113*	0.994	314	0%	285	33.7%	1	0%	-	-	-	NULL
ABCC5	10057	genome.wustl.edu	37	3	183663705	183663705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_005688.2	-1	reviewed	p.T1146M	1.000	297	0%	272	11.4%	6	16.6%	probably_damaging(0.986)	tolerated(0.06)	deleterious(0.757)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ECE2	9718	genome.wustl.edu	37	3	183975406	183975406	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014693.3	+1	validated	p.V114	0.061	70	0%	78	29.5%	33	57.5%	-	-	-	HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SORCS2	57537	genome.wustl.edu	37	4	7705052	7705052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_020777.2	+1	reviewed	p.V572M	0.998	159	0%	215	33.5%	5	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
LOC650293	650293	genome.wustl.edu	37	4	8951792	8951792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001040071.1	+1	provisional	p.H106Y	0.001	571	0%	554	35.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TMPRSS11F	389208	genome.wustl.edu	37	4	68938082	68938082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_207407.2	-1	validated	p.Q158R	0.027	334	0%	228	34.6%	0	-	benign(0.026)	tolerated(0.57)	neutral(0.007)	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671
RUFY3	22902	genome.wustl.edu	37	4	71628262	71628262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001037442.2	+1	validated	p.R69C	1.000	331	0.6%	290	42.4%	3	33.3%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
FAM13A	10144	genome.wustl.edu	37	4	89941610	89941610	+	Splice_Site	DEL	C	C	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014883.2	-1	validated	e3+1	1.000	-	-	-	-	-	-	-	-	-	-
DAPP1	27071	genome.wustl.edu	37	4	100756888	100756889	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014395.2	+1	validated	p.S73fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
INTS12	57117	genome.wustl.edu	37	4	106604429	106604429	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001142471.1	-1	validated	p.S284T	1.000	80	0%	56	46.4%	15	40%	probably_damaging(0.979)	tolerated(0.2)	deleterious(0.471)	NULL
NDST4	64579	genome.wustl.edu	37	4	115767075	115767075	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_022569.1	-1	provisional	p.S673	0.852	316	0.3%	276	35.1%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
TRPC3	7222	genome.wustl.edu	37	4	122853582	122853582	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001130698.1	-1	validated	p.R277	0.998	50	0%	64	29.7%	0	-	-	-	-	HMMPfam_TRP_2
FAT4	79633	genome.wustl.edu	37	4	126400925	126400925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024582.4	+1	validated	p.R4168H	0.002	216	0%	197	32.5%	0	-	benign(0.22)	tolerated(0.19)	neutral(0.071)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases
PABPC4L	132430	genome.wustl.edu	37	4	135121448	135121448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001114734.1	-1	validated	p.A243T	1.000	174	0%	136	32.4%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
KIAA0922	23240	genome.wustl.edu	37	4	154523475	154523475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015196.3	+1	validated	p.R812H	0.995	419	0.2%	389	30.3%	6	33.3%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
KLHL2	11275	genome.wustl.edu	37	4	166220777	166220777	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_007246.3	+1	validated	p.R298fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_Gal_oxid_central
WWC2	80014	genome.wustl.edu	37	4	184129246	184129246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024949.5	+1	validated	p.A128T	1.000	185	0%	164	31.7%	1	100%	benign(0.264)	deleterious(0)	deleterious(0.472)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186559306	186559306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003603.5	-1	reviewed	p.I278T	1.000	417	0%	341	29.6%	1	100%	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
PDCD6	10016	genome.wustl.edu	37	5	306868	306868	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000502359	+1	known	p.Q51R	1.000	40	0%	53	18.9%	316	12%	-	-	-	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
FASTKD3	79072	genome.wustl.edu	37	5	7867081	7867081	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024091.2	-1	validated	p.C372	0.901	205	0%	180	30%	8	50%	-	-	-	NULL
ENSG00000249556	0	genome.wustl.edu	37	5	14652550	14652550	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000515374	+1	novel	NULL	1.000	103	0%	97	27.8%	0	-	-	-	-	-
CDH18	1016	genome.wustl.edu	37	5	19571762	19571762	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_004934.3	-1	reviewed	p.Y393	0.955	320	0%	304	33.9%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
TARS	6897	genome.wustl.edu	37	5	33453456	33453456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_152295.3	+1	reviewed	p.R131H	1.000	253	0%	246	30.9%	65	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGS,superfamily_TGS-like
NIPBL	25836	genome.wustl.edu	37	5	37052503	37052503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_133433.3	+1	reviewed	p.Q2366H	0.996	181	0%	150	43.3%	25	16%	probably_damaging(0.964)	tolerated(0.08)	deleterious(0.706)	superfamily_ARM repeat
CENPK	64105	genome.wustl.edu	37	5	64814373	64814373	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_022145.3	-1	validated	p.L247	0.997	473	0%	376	35.6%	12	33.3%	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589304	67589307	+	Frame_Shift_Del	DEL	ACCA	ACCA	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	ACCA	ACCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_181523.1	+1	reviewed	p.Q432fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591135	67591135	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_181523.1	+1	reviewed	p.R577fs	0.016	-	-	-	-	-	-	-	-	-	NULL
SV2C	22987	genome.wustl.edu	37	5	75594749	75594749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014979.1	+1	provisional	p.T545A	1.000	413	0%	377	33.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
AP3B1	8546	genome.wustl.edu	37	5	77409577	77409577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003664.3	-1	reviewed	p.S750G	0.225	359	0%	318	32.4%	9	11.1%	benign(0.053)	tolerated(0.09)	neutral(0.300)	NULL
ZFYVE16	9765	genome.wustl.edu	37	5	79751541	79751541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001105251.1	+1	validated	p.G1213D	1.000	561	0%	481	37.2%	13	15.3%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
ARRDC3	57561	genome.wustl.edu	37	5	90670759	90670759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_020801.2	-1	validated	p.R284C	1.000	209	0%	150	40%	39	38.4%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Arrestin_C,superfamily_Ig_E-set
TTC37	9652	genome.wustl.edu	37	5	94842693	94842693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014639.2	-1	provisional	p.A1013T	0.063	450	0%	386	36.5%	13	46.1%	benign(0)	tolerated(0.58)	neutral(0.005)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_Prenyl_trans
MEGF10	84466	genome.wustl.edu	37	5	126792988	126792989	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_032446.2	+1	validated	p.1138in_frame_insS	0.157:0.185	-	-	-	-	-	-	-	-	-	NULL
PCDHA4	56144	genome.wustl.edu	37	5	140188623	140188623	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018907.2	+1	reviewed	p.G617	0.000	42	0%	78	38.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB3	56132	genome.wustl.edu	37	5	140481136	140481136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018937.2	+1	reviewed	p.M301I	0.029	83	0%	52	11.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB6	56130	genome.wustl.edu	37	5	140531969	140531969	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018939.2	+1	reviewed	p.L711	0.939	47	0%	71	29.6%	4	0%	-	-	-	NULL
ENSG00000251462	0	genome.wustl.edu	37	5	140621697	140621697	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000503443	-1	known	NULL	0.015	22	0%	30	30%	0	-	-	-	-	-
PCDHGA1	56114	genome.wustl.edu	37	5	140710396	140710396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018912.2	+1	reviewed	p.A49T	0.288	169	0%	181	42.5%	0	-	benign(0.015)	deleterious(0.02)	neutral(0.384)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
ENSG00000241956	0	genome.wustl.edu	37	5	164028109	164028109	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000486913	+1	known	NULL	1.000	56	1.8%	64	39.1%	0	-	-	-	-	-
RMND5B	64777	genome.wustl.edu	37	5	177565142	177565143	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_022762.3	+1	provisional	p.E10fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ADAMTS2	9509	genome.wustl.edu	37	5	178554963	178554963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014244.2	-1	reviewed	p.G872R	1.000	106	0%	114	19.3%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
TRIM41	90933	genome.wustl.edu	37	5	180660759	180660759	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000514219	+1	known	p.E51K	0.980	130	0%	173	38.2%	36	30.5%	-	-	-	NULL
KIAA0319	9856	genome.wustl.edu	37	6	24563703	24563703	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014809.3	-1	reviewed	p.G825	0.000	107	0%	99	40.4%	3	100%	-	-	-	NULL
HLA-DOB	3112	genome.wustl.edu	37	6	32782828	32782828	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000447394	-1	known	p.E105*	0.976	66	0%	94	36.2%	2	0%	-	-	-	superfamily_MHC antigen-recognition domain
FGD2	221472	genome.wustl.edu	37	6	36982459	36982459	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_173558.3	+1	validated	p.S287	0.991	107	0%	133	37.6%	5	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
TCTE1	202500	genome.wustl.edu	37	6	44253985	44253985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_182539.3	-1	validated	p.V188M	1.000	20	0%	27	22.2%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52047
COL12A1	1303	genome.wustl.edu	37	6	75844500	75844500	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000419671	-1	known	p.R557S	0.758	363	0%	302	14.9%	43	20.9%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TPBG	7162	genome.wustl.edu	37	6	83075636	83075636	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_006670.4	+1	reviewed	p.R320	0.057	159	0%	128	21.1%	72	26.3%	-	-	-	HMMPfam_LRRCT,HMMSmart_SM00082,superfamily_L domain-like
SLC16A10	117247	genome.wustl.edu	37	6	111498811	111498811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000419619	+1	known	p.C181Y	1.000	93	1.1%	35	57.1%	0	-	probably_damaging(0.954)	deleterious(0.02)	deleterious(0.780)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
FAM26E	254228	genome.wustl.edu	37	6	116836819	116836819	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_153711.2	+1	validated	p.C199	0.978	415	0%	341	32%	2	0%	-	-	-	NULL
RSPH4A	345895	genome.wustl.edu	37	6	116938331	116938331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001010892.2	+1	reviewed	p.Q182R	0.008	214	0%	234	37.2%	24	62.5%	possibly_damaging(0.918)	deleterious(0.04)	deleterious(0.718)	NULL
C6orf170	221322	genome.wustl.edu	37	6	121642830	121642830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_152730.4	-1	validated	p.G89D	1.000	617	0%	448	34.2%	4	75%	possibly_damaging(0.945)	tolerated(0.12)	deleterious(0.650)	NULL
VNN2	8875	genome.wustl.edu	37	6	133078922	133078922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_004665.2	-1	reviewed	p.A34V	0.711	332	0%	277	28.5%	0	-	probably_damaging(0.968)	tolerated(0.16)	deleterious(0.469)	superfamily_Ntlse/CNhydtse
TAB2	23118	genome.wustl.edu	37	6	149718860	149718860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015093.4	+1	reviewed	p.R575M	1.000	268	0%	255	34.5%	11	36.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152464786	152464786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_182961.2	-1	reviewed	p.P8364L	1.000	283	0%	252	16.3%	3	0%	possibly_damaging(0.671)	deleterious(0.01)	deleterious(0.643)	superfamily_Spectrin repeat
TIAM2	26230	genome.wustl.edu	37	6	155577787	155577787	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_012454.3	+1	reviewed	p.P1546	0.042	73	1.4%	72	47.2%	4	0%	-	-	-	NULL
WDR27	253769	genome.wustl.edu	37	6	169982939	169982939	+	Missense_Mutation	SNP	G	G	A	rs147471495	by1000genomes	TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_182552.3	-1	validated	p.A839V	0.000	66	0%	89	28.1%	4	75%	benign(0.156)	tolerated(0.3)	neutral(0.043)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CARD11	84433	genome.wustl.edu	37	7	2946424	2946424	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_032415.3	-1	validated	p.L1105	0.999	28	0%	52	15.4%	4	0%	-	-	-	superfamily_SSF52540
DNAH11	8701	genome.wustl.edu	37	7	21892155	21892155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003777.3	+1	reviewed	p.R3663H	1.000	275	0%	288	33.7%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GGCT	79017	genome.wustl.edu	37	7	30540210	30540210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024051.2	-1	provisional	p.D77N	1.000	531	0.2%	436	36.7%	69	23.1%	benign(0.396)	tolerated(0.11)	neutral(0.399)	HMMPfam_AIG2,superfamily_BtrG-like (Pfam 03674)
EPDR1	54749	genome.wustl.edu	37	7	37988590	37988590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_017549.3	+1	reviewed	p.G260W	1.000	228	0%	166	28.9%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ependymin
NPC1L1	29881	genome.wustl.edu	37	7	44578992	44578992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_013389.2	-1	reviewed	p.T335I	0.000	138	0%	132	33.3%	0	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	NULL
MYO1G	64005	genome.wustl.edu	37	7	45005293	45005293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_033054.2	-1	validated	p.P775L	0.994	57	0%	106	37.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C7orf57	136288	genome.wustl.edu	37	7	48080988	48080988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001100159.1	+1	validated	p.A38V	0.001	87	0%	118	39%	9	33.3%	possibly_damaging(0.811)	tolerated(0.69)	neutral(0.307)	NULL
ZNF273	10793	genome.wustl.edu	37	7	64389506	64389582	+	RNA	DEL	GAGTTTTCCTTATTGCACAGGAAAGCATTTATACTTGAGAAAAATTGTATAAAGAATGGAAAAGTCATTAATATCTG	GAGTTTTCCTTATTGCACAGGAAAGCATTTATACTTGAGAAAAATTGTATAAAGAATGGAAAAGTCATTAATATCTG	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	GAGTTTTCCTTATTGCACAGGAAAGCATTTATACTTGAGAAAAATTGTATAAAGAATGGAAAAGTCATTAATATCTG	GAGTTTTCCTTATTGCACAGGAAAGCATTTATACTTGAGAAAAATTGTATAAAGAATGGAAAAGTCATTAATATCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NR_003099.1	+1	reviewed	NULL	0.142:0.144:0.147:0.149:0.151:0.152:0.160:0.118:0.128:0.128:0.140:0.173:0.189:0.178:0.074:0.039:0.042:0.047:0.045:0.013:0.008:0.007:0.008:0.009:0.007:0.007:0.020:0.049:0.051:0.033:0.032:0.027:0.028:0.020:0.007:0.003:0.002:0.002:0.006:0.007:0.003:0.004:0.003:0.002:0.001:0.000:0.000:0.002:0.003:0.006:0.007:0.009:0.009:0.007:0.007:0.009:0.009:0.008:0.008:0.017:0.034:0.044:0.050:0.053:0.051:0.070:0.079:0.101:0.113:0.130:0.143:0.163:0.166:0.271:0.289:0.298:0.294	-	-	-	-	-	-	-	-	-	-
ZNF498	221785	genome.wustl.edu	37	7	99227118	99227118	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_145115.2	+1	validated	p.H370	0.777	67	0%	60	36.7%	5	80%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GIGYF1	64599	genome.wustl.edu	37	7	100284334	100284335	+	In_Frame_Ins	INS	-	-	CCT	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_022574.4	-1	validated	p.211in_frame_insE	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
DENND2A	27147	genome.wustl.edu	37	7	140221708	140221708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015689.3	-1	validated	p.Q953R	1.000	63	0%	60	36.7%	11	18.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_dDENN,HMMSmart_SM00801
CASP2	835	genome.wustl.edu	37	7	143000990	143000990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_032982.2	+1	reviewed	p.R361C	0.915	184	0%	190	33.7%	21	38%	benign(0.085)	deleterious(0)	neutral(0.451)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
OR2A5	393046	genome.wustl.edu	37	7	143748064	143748064	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_012365.1	+1	provisional	p.A190	0.026	267	0%	226	30.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SSPO	23145	genome.wustl.edu	37	7	149520473	149520473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000378016	+1	known	p.A4431T	0.936	54	0%	73	38.4%	0	-	-	-	-	superfamily_Serine proterase inhibitors
KCNH2	3757	genome.wustl.edu	37	7	150649877	150649877	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000238.2	-1	reviewed	p.W398*	1.000	79	0%	115	40%	5	0%	-	-	-	NULL
ASB10	136371	genome.wustl.edu	37	7	150878314	150878314	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001142459.1	-1	reviewed	p.R317	1.000	20	0%	42	21.4%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
MYOM2	9172	genome.wustl.edu	37	8	2005570	2005570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003970.2	+1	validated	p.R123H	0.001	31	0%	62	33.9%	0	-	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	NULL
LZTS1	11178	genome.wustl.edu	37	8	20112432	20112432	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_021020.2	-1	reviewed	p.S87	0.993	104	0%	138	30.4%	0	-	-	-	-	NULL
XPO7	23039	genome.wustl.edu	37	8	21843131	21843131	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001100161.1	+1	validated	p.A511	0.854	249	0%	238	31.5%	26	34.6%	-	-	-	superfamily_ARM repeat
NEFL	4747	genome.wustl.edu	37	8	24810424	24810426	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000221169	-1	known	p.E510in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
INTS9	55756	genome.wustl.edu	37	8	28638445	28638445	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018250.3	-1	reviewed	p.Q389*	1.000	162	0%	186	31.7%	18	0%	-	-	-	NULL
RNF122	79845	genome.wustl.edu	37	8	33406944	33406944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024787.2	-1	reviewed	p.H113Y	1.000	111	0%	136	40.4%	45	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
SNAI2	6591	genome.wustl.edu	37	8	49831459	49831459	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003068.3	-1	reviewed	p.V238	1.000	359	0%	342	34.5%	7	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
OPRK1	4986	genome.wustl.edu	37	8	54147414	54147414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000912.3	-1	validated	p.P172H	1.000	221	0%	213	34.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
CHD7	55636	genome.wustl.edu	37	8	61765995	61765995	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_017780.2	+1	reviewed	p.S2237	0.437	145	0%	163	37.4%	3	33.3%	-	-	-	NULL
LACTB2	51110	genome.wustl.edu	37	8	71553220	71553220	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_016027.2	-1	validated	p.R220*	0.987	152	0%	96	35.4%	9	0%	-	-	-	superfamily_SSF56281
STAU2	27067	genome.wustl.edu	37	8	74585345	74585348	+	Frame_Shift_Del	DEL	TGAT	TGAT	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	TGAT	TGAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014393.2	-1	reviewed	p.N103fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
FABP9	646480	genome.wustl.edu	37	8	82371490	82371490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001080526.1	-1	provisional	p.I52M	0.997	498	0%	426	30.5%	0	-	probably_damaging(0.994)	tolerated(0.15)	deleterious(0.693)	HMMPfam_Lipocalin,superfamily_Calycin
TRPS1	7227	genome.wustl.edu	37	8	116631584	116631584	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014112.2	-1	reviewed	p.N247	0.886	215	0%	205	31.7%	8	50%	-	-	-	HMMSmart_ZnF_C2H2
KLHL38	340359	genome.wustl.edu	37	8	124657995	124657995	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001081675.2	-1	validated	p.T577fs	0.000	-	-	-	-	-	-	-	-	-	NULL
CYP11B2	1585	genome.wustl.edu	37	8	143994060	143994060	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000498.3	-1	reviewed	p.W428*	1.000	90	0%	116	34.5%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
JAK2	3717	genome.wustl.edu	37	9	5080679	5080679	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_004972.3	+1	reviewed	p.T810	0.991	222	0%	124	16.9%	1	0%	-	-	-	superfamily_Kinase_like
JAK2	3717	genome.wustl.edu	37	9	5089784	5089784	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_004972.3	+1	reviewed	p.D894E	1.000	318	0%	290	34.1%	2	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
GLDC	2731	genome.wustl.edu	37	9	6533049	6533049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000170.2	-1	reviewed	p.P1011S	1.000	395	0%	381	37.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FREM1	158326	genome.wustl.edu	37	9	14746951	14746951	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_144966.5	-1	reviewed	p.I2036	0.000	242	0%	197	27.4%	1	0%	-	-	-	NULL
KIAA1797	54914	genome.wustl.edu	37	9	20978378	20978378	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_017794.3	+1	validated	p.T1434	0.843	169	0%	165	12.7%	20	35%	-	-	-	superfamily_ARM-type_fold
RPP25L	138716	genome.wustl.edu	37	9	34610959	34610959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_148178.1	-1	validated	p.R112H	1.000	28	0%	32	37.5%	49	40.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF82704
TLN1	7094	genome.wustl.edu	37	9	35703883	35703883	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_006289.3	-1	reviewed	p.N2082	0.998	365	0%	455	34.7%	152	29.6%	-	-	-	NULL
ALDH1B1	219	genome.wustl.edu	37	9	38397249	38397249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000692.3	+1	reviewed	p.Y502H	0.998	66	0%	76	34.2%	45	33.3%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Aldedh,superfamily_ALDH-like
GCNT1	2650	genome.wustl.edu	37	9	79117925	79117925	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001097633.1	+1	reviewed	p.W210G	1.000	109	0%	85	41.2%	23	43.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Branch
FAM75D1	389763	genome.wustl.edu	37	9	84605990	84605990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001001670.2	+1	validated	p.P202L	0.004	794	0%	812	33.7%	0	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
AUH	549	genome.wustl.edu	37	9	93983250	93983250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001698.2	-1	reviewed	p.A227V	0.984	79	0%	68	14.7%	39	7.6%	benign(0.007)	tolerated(0.09)	neutral(0.296)	HMMPfam_ECH,superfamily_ClpP/crotonase
PTCH1	5727	genome.wustl.edu	37	9	98218673	98218673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000264.3	-1	reviewed	p.T1064M	1.000	84	0%	80	37.5%	9	33.3%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_Patched,superfamily_SSF82866
ZNF367	195828	genome.wustl.edu	37	9	99160475	99160475	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_153695.3	-1	validated	p.S181*	1.000	314	0%	311	37.9%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF462	58499	genome.wustl.edu	37	9	109688057	109688057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_021224.4	+1	validated	p.K622E	1.000	341	0%	329	34.3%	0	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_beta-sandwich domain of Sec23/24
PAPPA	5069	genome.wustl.edu	37	9	118950132	118950132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002581.3	+1	reviewed	p.R372H	0.975	38	0%	47	27.7%	1	0%	possibly_damaging(0.598)	tolerated(0.12)	neutral(0.468)	superfamily_SSF55486
DAB2IP	153090	genome.wustl.edu	37	9	124532972	124532972	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_032552.2	+1	validated	p.Q655*	1.000	45	0%	52	50%	13	0%	-	-	-	NULL
ANGPTL2	23452	genome.wustl.edu	37	9	129856160	129856160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_012098.2	-1	reviewed	p.T288I	1.000	67	0%	84	20.2%	17	0%	benign(0.007)	tolerated(0.13)	neutral(0.253)	HMMPfam_Fibrinogen_C,HMMSmart_FBG,superfamily_Fibrinogen_a/b/g_C
STXBP1	6812	genome.wustl.edu	37	9	130425628	130425628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003165.3	+1	reviewed	p.R192W	1.000	78	0%	73	34.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
TOR1B	27348	genome.wustl.edu	37	9	132569491	132569491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014506.1	+1	provisional	p.G164S	1.000	292	0.3%	334	36.2%	13	69.2%	benign(0.333)	deleterious(0.02)	deleterious(0.487)	HMMSmart_AAA,HMMPfam_Torsin,superfamily_SSF52540
LAMC3	10319	genome.wustl.edu	37	9	133952658	133952658	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_006059.3	+1	reviewed	p.T1238	0.016	55	0%	55	34.5%	4	0%	-	-	-	NULL
ACBD5	91452	genome.wustl.edu	37	10	27504518	27504518	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_145698.3	-1	validated	p.S294	1.000	503	0%	450	31.6%	19	52.6%	-	-	-	NULL
MARCH8	220972	genome.wustl.edu	37	10	45959711	45959711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001002265.1	-1	validated	p.T73M	1.000	163	0%	180	36.1%	5	40%	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	superfamily_SSF57850
OIT3	170392	genome.wustl.edu	37	10	74660192	74660192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_152635.1	+1	provisional	p.C165Y	1.000	119	0%	143	33.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00181,superfamily_EGF/Laminin
USP54	159195	genome.wustl.edu	37	10	75264669	75264669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_152586.3	-1	provisional	p.R1417H	1.000	233	0%	261	15.7%	25	20%	benign(0.015)	deleterious(0)	neutral(0.445)	NULL
DLG5	9231	genome.wustl.edu	37	10	79588731	79588731	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_004747.3	-1	reviewed	p.S733T	1.000	33	0%	32	37.5%	15	0%	possibly_damaging(0.484)	tolerated(0.57)	neutral(0.167)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PTEN	5728	genome.wustl.edu	37	10	89712017	89712017	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000371953	+1	known	e6+1	1.000	200	0%	98	59.2%	2	100%	-	-	-	-
SLC25A28	81894	genome.wustl.edu	37	10	101372304	101372304	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_031212.3	-1	validated	p.A191	0.000	143	0%	197	30.5%	30	33.3%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
ADRA2A	150	genome.wustl.edu	37	10	112838979	112838979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000681.3	+1	reviewed	p.Y409H	1.000	147	0%	236	33.9%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TACC2	10579	genome.wustl.edu	37	10	123843762	123843762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_206862.2	+1	reviewed	p.P583T	0.001	95	0%	116	31%	3	33.3%	benign(0.002)	tolerated(1)	-	NULL
PAOX	196743	genome.wustl.edu	37	10	135193547	135193547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_152911.2	+1	validated	p.R76W	0.650	17	0%	61	29.5%	1	100%	possibly_damaging(0.687)	deleterious(0.02)	deleterious(0.629)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
KCNQ1	3784	genome.wustl.edu	37	11	2610068	2610068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000218.2	+1	reviewed	p.D459E	0.023	64	0%	80	37.5%	4	0%	benign(0.01)	tolerated(0.43)	neutral(0.014)	HMMPfam_KCNQ_channel
OR51S1	119692	genome.wustl.edu	37	11	4870410	4870410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001004758.1	-1	provisional	p.P10L	0.001	396	0.3%	320	17.2%	0	-	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
RRAS2	22800	genome.wustl.edu	37	11	14303235	14303235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_012250.5	-1	reviewed	p.R147Q	1.000	734	0.1%	640	32.5%	56	46.4%	possibly_damaging(0.761)	deleterious(0.04)	deleterious(0.631)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PDE3B	5140	genome.wustl.edu	37	11	14666368	14666368	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000922.3	+1	validated	p.S249	1.000	23	0%	29	62.1%	0	-	-	-	-	NULL
NAT10	55226	genome.wustl.edu	37	11	34129797	34129797	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024662.2	+1	validated	p.R9*	1.000	238	0%	261	36.4%	10	30%	-	-	-	NULL
MYBPC3	4607	genome.wustl.edu	37	11	47372096	47372096	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000256.3	-1	reviewed	p.P121	0.000	26	0%	48	31.2%	0	-	-	-	-	NULL
NUP160	23279	genome.wustl.edu	37	11	47861981	47861982	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015231.1	-1	validated	p.N158fs	0.992:0.993	-	-	-	-	-	-	-	-	-	NULL
VWCE	220001	genome.wustl.edu	37	11	61053804	61053804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_152718.2	-1	validated	p.D175N	0.956	27	0%	25	40%	0	-	possibly_damaging(0.722)	tolerated(0.1)	deleterious(0.548)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin
UBXN1	51035	genome.wustl.edu	37	11	62445826	62445826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015853.3	-1	provisional	p.Q92R	0.975	322	0%	305	36.1%	239	45.6%	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
PPP2R5B	5526	genome.wustl.edu	37	11	64695604	64695604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_006244.3	+1	reviewed	p.Y189H	1.000	446	0%	517	37.5%	17	23.5%	benign(0.014)	deleterious(0.05)	neutral(0.346)	HMMPfam_B56
ACTN3	89	genome.wustl.edu	37	11	66319007	66319007	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001104.1	+1	reviewed	p.L91	1.000	156	0%	174	36.8%	0	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
PITPNM1	9600	genome.wustl.edu	37	11	67267697	67267697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_004910.2	-1	validated	p.R279Q	0.163	17	0%	26	42.3%	50	50%	probably_damaging(0.957)	tolerated(0.61)	neutral(0.405)	NULL
INPPL1	3636	genome.wustl.edu	37	11	71945645	71945645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001567.3	+1	reviewed	p.R801C	0.535	83	0%	106	27.4%	120	36.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MYO7A	4647	genome.wustl.edu	37	11	76893630	76893630	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000260.3	+1	reviewed	p.L1090	1.000	49	0%	59	30.5%	0	-	-	-	-	HMMSmart_SM00139
KIAA1731	85459	genome.wustl.edu	37	11	93430823	93430823	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_033395.1	+1	validated	p.P915	0.110	251	0%	215	32.1%	1	0%	-	-	-	NULL
TRPC6	7225	genome.wustl.edu	37	11	101347072	101347072	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_004621.5	-1	reviewed	p.T568	0.932	317	0%	264	26.9%	1	0%	-	-	-	HMMPfam_Ion_trans
CASP5	838	genome.wustl.edu	37	11	104877843	104877843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001136112.1	-1	reviewed	p.L147F	0.000	533	0%	436	38.8%	0	-	probably_damaging(0.997)	tolerated(0.35)	deleterious(0.487)	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain
SORL1	6653	genome.wustl.edu	37	11	121489588	121489588	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003105.4	+1	reviewed	p.Q1904*	1.000	440	0%	407	34.6%	21	9.5%	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
IGSF9B	22997	genome.wustl.edu	37	11	133790179	133790179	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014987.1	-1	validated	p.L1147	1.000	18	0%	33	24.2%	0	-	-	-	-	NULL
WNK1	65125	genome.wustl.edu	37	12	992632	992632	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018979.3	+1	reviewed	p.K1187	0.990	472	0%	418	33.3%	14	21.4%	-	-	-	NULL
KCNA1	3736	genome.wustl.edu	37	12	5021678	5021678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000217.2	+1	reviewed	p.M378I	1.000	95	1.1%	111	36%	0	-	probably_damaging(0.97)	deleterious(0.03)	deleterious(0.777)	HMMPfam_Ion_trans,superfamily_SSF81324
AICDA	57379	genome.wustl.edu	37	12	8757858	8757858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_020661.2	-1	reviewed	p.R127Q	0.984	22	0%	42	50%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_APOBEC_C,superfamily_Cytidine deaminase-like
WBP11	51729	genome.wustl.edu	37	12	14949872	14949872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_016312.2	-1	reviewed	p.R86C	1.000	560	0%	441	35.4%	23	39.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Wbp11
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	byCluster	TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_033360.2	-1	reviewed	p.G12V	1.000	451	0%	514	56.2%	16	62.5%	benign(0.048)	deleterious(0)	neutral(0.448)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX11	1663	genome.wustl.edu	37	12	31242866	31242866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000404673	+1	known	p.R280K	0.488	385	0%	429	14.7%	7	28.5%	unknown(0)	-	-	HMMSmart_DEXDc2
ARID2	196528	genome.wustl.edu	37	12	46230604	46230604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_152641.2	+1	validated	p.R285W	1.000	598	0.2%	482	32.4%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
COL2A1	1280	genome.wustl.edu	37	12	48372131	48372131	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001844.4	-1	reviewed	p.I982	0.998	56	0%	75	34.7%	1	0%	-	-	-	HMMPfam_Collagen
MYO1A	4640	genome.wustl.edu	37	12	57441828	57441828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_005379.2	-1	reviewed	p.P59S	0.981	273	0%	263	14.1%	0	-	benign(0.002)	tolerated(0.29)	neutral(0.029)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
LRP1	4035	genome.wustl.edu	37	12	57554871	57554871	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002332.2	+1	reviewed	p.T725	1.000	56	0%	79	32.9%	11	9%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
DPY19L2	283417	genome.wustl.edu	37	12	64057598	64057598	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_173812.4	-1	validated	p.N130	1.000	266	0%	201	34.3%	0	-	-	-	-	HMMPfam_DUF2211
C12orf26	84190	genome.wustl.edu	37	12	82752426	82752426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_032230.2	+1	validated	p.R28G	0.004	73	0%	86	10.5%	5	0%	possibly_damaging(0.83)	tolerated(0.12)	deleterious(0.576)	NULL
NUP37	79023	genome.wustl.edu	37	12	102468146	102468146	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024057.2	-1	provisional	p.V323fs	1.000	-	-	-	-	-	-	-	-	-	NULL
C12orf51	283450	genome.wustl.edu	37	12	112631398	112631398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001109662.2	-1	validated	p.D2522Y	1.000	191	0%	232	15.9%	6	0%	possibly_damaging(0.926)	-	-	NULL
VSIG10	54621	genome.wustl.edu	37	12	118520006	118520006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_019086.5	-1	validated	p.G197V	1.000	270	0%	328	38.1%	17	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PSMD9	5715	genome.wustl.edu	37	12	122340977	122340977	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002813.4	+1	reviewed	p.L173	1.000	293	0%	424	33.5%	102	41.1%	-	-	-	HMMSmart_SM00228,superfamily_PDZ domain-like
DNAH10	196385	genome.wustl.edu	37	12	124337795	124337795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_207437.3	+1	validated	p.E1994K	1.000	187	0%	216	42.1%	1	100%	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PIWIL1	9271	genome.wustl.edu	37	12	130842054	130842054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_004764.3	+1	reviewed	p.Y541H	0.988	499	0%	375	34.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ZDHHC20	253832	genome.wustl.edu	37	13	21965918	21965918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_153251.2	-1	provisional	p.V224I	1.000	266	0%	204	33.8%	23	43.4%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
EFHA1	221154	genome.wustl.edu	37	13	22140935	22140935	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_152726.2	-1	validated	e2+1	1.000	172	0%	137	30.7%	0	-	-	-	-	-
FAM123A	219287	genome.wustl.edu	37	13	25744274	25744274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_152704.2	-1	validated	p.R495Q	0.874	34	0%	31	16.1%	0	-	benign(0.152)	tolerated(0.39)	neutral(0.029)	HMMPfam_WTX
MTUS2	23281	genome.wustl.edu	37	13	29933576	29933576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001033602.2	+1	validated	p.A1038V	0.081	14	0%	21	28.6%	0	-	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
N4BP2L2	10443	genome.wustl.edu	37	13	33016939	33016939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_033111.3	-1	validated	p.L579M	0.002	81	0%	34	35.3%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DGKH	160851	genome.wustl.edu	37	13	42733430	42733430	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_178009.2	+1	reviewed	p.C217	1.000	90	0%	78	12.8%	0	-	-	-	-	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
AKAP11	11215	genome.wustl.edu	37	13	42877795	42877795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_016248.2	+1	reviewed	p.P1638H	1.000	135	0%	119	30.3%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDADC1	81602	genome.wustl.edu	37	13	49848455	49848455	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_030911.2	+1	validated	p.V343	1.000	489	0%	381	36%	5	20%	-	-	-	HMMPfam_dCMP_cyt_deam_1,superfamily_Cytidine deaminase-like
GPC6	10082	genome.wustl.edu	37	13	95034748	95034748	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_005708.3	+1	reviewed	p.S411	0.990	236	0%	245	31.4%	4	0%	-	-	-	HMMPfam_Glypican
RAB20	55647	genome.wustl.edu	37	13	111176157	111176157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_017817.1	-1	provisional	p.G187D	1.000	195	0%	275	34.2%	117	47.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD8	57680	genome.wustl.edu	37	14	21878149	21878149	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_020920.3	-1	reviewed	e10-2	1.000	279	0%	279	33.7%	1	100%	-	-	-	-
SLC7A8	23428	genome.wustl.edu	37	14	23608685	23608685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_012244.2	-1	validated	p.Y287C	1.000	217	0%	297	35%	29	55.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
HOMEZ	57594	genome.wustl.edu	37	14	23745113	23745113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_020834.2	-1	validated	p.T442A	0.999	446	0.2%	592	31.8%	41	39%	benign(0.021)	tolerated(0.45)	neutral(0.013)	NULL
MYH6	4624	genome.wustl.edu	37	14	23865524	23865524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002471.3	-1	validated	p.R800C	1.000	131	0%	178	12.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRC16B	90668	genome.wustl.edu	37	14	24523619	24523619	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_138360.3	+1	validated	p.T87	0.363	48	0%	68	38.2%	0	-	-	-	-	NULL
RIPK3	11035	genome.wustl.edu	37	14	24807178	24807178	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_006871.3	-1	reviewed	p.L245	0.089	50	0%	66	34.8%	26	46.1%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HECTD1	25831	genome.wustl.edu	37	14	31592198	31592198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015382.2	-1	validated	p.E1679D	0.992	425	0%	461	10.8%	48	16.6%	benign(0.388)	tolerated(0.05)	deleterious(0.469)	NULL
GPHB5	122876	genome.wustl.edu	37	14	63784385	63784385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_145171.2	-1	validated	p.A60V	1.000	81	0%	68	11.8%	0	-	-	-	-	NULL
FUT8	2530	genome.wustl.edu	37	14	66208947	66208947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_178154.1	+1	reviewed	p.R516Q	1.000	369	0%	308	34.7%	4	0%	benign(0.016)	tolerated(0.2)	neutral(0.050)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
VSX2	338917	genome.wustl.edu	37	14	74727394	74727394	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_182894.2	+1	reviewed	p.D286	1.000	17	0%	28	32.1%	0	-	-	-	-	NULL
MLH3	27030	genome.wustl.edu	37	14	75516229	75516229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001040108.1	-1	reviewed	p.R44G	1.000	137	0%	137	38%	2	50%	unknown(0)	deleterious(0.04)	-	HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CCDC88C	440193	genome.wustl.edu	37	14	91779767	91779767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001080414.2	-1	validated	p.A798V	0.007	15	0%	32	50%	9	33.3%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
ASB2	51676	genome.wustl.edu	37	14	94405723	94405723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_016150.3	-1	reviewed	p.R402C	1.000	11	0%	25	36%	16	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
DLK1	8788	genome.wustl.edu	37	14	101201179	101201179	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003836.5	+1	reviewed	p.P366	0.016	71	0%	76	21.1%	0	-	-	-	-	NULL
IGHD	3495	genome.wustl.edu	37	14	106307545	106307545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000390556	-1	known	p.P165S	0.179	50	0%	60	35%	167	0%	possibly_damaging(0.945)	tolerated(0.11)	deleterious(0.661)	superfamily_Immunoglobulin
RYR3	6263	genome.wustl.edu	37	15	33952410	33952410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001036.3	+1	validated	p.L1470M	0.995	155	0%	172	33.7%	0	-	probably_damaging(0.991)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34018618	34018618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001036.3	+1	validated	p.R2315H	1.000	153	0%	150	13.3%	0	-	probably_damaging(1)	-	-	NULL
MAPKBP1	23005	genome.wustl.edu	37	15	42104788	42104788	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001128608.1	+1	validated	p.Y191*	1.000	108	0%	149	28.2%	2	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SQRDL	58472	genome.wustl.edu	37	15	45968397	45968397	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_021199.2	+1	provisional	p.Q251	0.061	156	0%	135	37.8%	75	48%	-	-	-	HMMPfam_Pyr_redox_2,superfamily_SSF51905
HDC	3067	genome.wustl.edu	37	15	50534834	50534834	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002112.2	-1	validated	p.N538Y	0.039	199	0%	245	32.7%	2	100%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
MYO5A	4644	genome.wustl.edu	37	15	52632509	52632509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000259.3	-1	reviewed	p.K1375E	1.000	103	0%	136	13.2%	2	50%	possibly_damaging(0.892)	deleterious(0.04)	deleterious(0.700)	NULL
EDC3	80153	genome.wustl.edu	37	15	74925119	74925119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001142443.1	-1	validated	p.D454G	1.000	69	0%	71	14.1%	24	12.5%	benign(0.08)	tolerated(0.37)	neutral(0.025)	superfamily_YjeF N-terminal domain-like
C15orf39	56905	genome.wustl.edu	37	15	75499513	75499513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015492.4	+1	validated	p.T375I	0.025	58	0%	102	33.3%	38	31.5%	unknown(0)	deleterious(0)	-	NULL
PSTPIP1	9051	genome.wustl.edu	37	15	77322884	77322884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003978.3	+1	reviewed	p.R202W	0.338	41	0%	66	51.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EFTUD1	79631	genome.wustl.edu	37	15	82450100	82450100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024580.5	-1	validated	p.A662T	1.000	384	0%	369	12.7%	22	13.6%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	superfamily_EF-G C-terminal domain-like
SH3GL3	6457	genome.wustl.edu	37	15	84287234	84287235	+	RNA	INS	-	-	TTG	rs10700817		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NR_026799.1	+1	validated	NULL	0.000:0.679	-	-	-	-	-	-	-	-	-	-
MRPL46	26589	genome.wustl.edu	37	15	89008864	89008864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_022163.3	-1	reviewed	p.M123I	0.232	352	0%	297	28.3%	17	35.2%	benign(0.002)	tolerated(0.46)	neutral(0.012)	NULL
VPS33B	26276	genome.wustl.edu	37	15	91543727	91543727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018668.3	-1	reviewed	p.I525T	0.997	153	0%	173	36.4%	21	14.2%	benign(0.043)	deleterious(0.01)	neutral(0.408)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
WDR90	197335	genome.wustl.edu	37	16	703523	703523	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_145294.4	+1	provisional	e12-2	0.999	83	0%	106	33%	3	66.6%	-	-	-	-
RHBDL1	9028	genome.wustl.edu	37	16	727946	727946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003961.1	+1	provisional	p.G404D	1.000	17	0%	37	21.6%	3	0%	benign(0.389)	tolerated(0.22)	neutral(0.167)	NULL
CCDC154	645811	genome.wustl.edu	37	16	1493960	1493960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001143980.1	-1	provisional	p.V21I	0.000	31	0%	46	21.7%	0	-	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
IFT140	9742	genome.wustl.edu	37	16	1652418	1652418	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000458658	-1	known	e2+1	0.101	149	0%	229	35.8%	31	64.5%	possibly_damaging(0.939)	tolerated(0.07)	deleterious(0.704)	-
HS3ST6	64711	genome.wustl.edu	37	16	1961835	1961835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001009606.2	-1	validated	p.R231H	0.998	52	0%	60	30%	0	-	possibly_damaging(0.594)	deleterious(0)	deleterious(0.649)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRAP1	10131	genome.wustl.edu	37	16	3729730	3729730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_016292.2	-1	validated	p.S178L	1.000	71	0%	79	29.1%	145	35.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
SMG1	23049	genome.wustl.edu	37	16	18844443	18844443	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015092.4	-1	reviewed	p.R2871*	0.994	197	0%	201	16.9%	5	40%	-	-	-	NULL
RNF40	9810	genome.wustl.edu	37	16	30780216	30780218	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014771.2	+1	reviewed	p.K720in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
FAM192A	80011	genome.wustl.edu	37	16	57201101	57201101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024946.2	-1	validated	p.K129R	1.000	469	0%	378	34.7%	33	45.4%	possibly_damaging(0.541)	tolerated(0.18)	neutral(0.239)	NULL
DOK4	55715	genome.wustl.edu	37	16	57507340	57507341	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018110.3	-1	validated	p.P311fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PLEKHG4	25894	genome.wustl.edu	37	16	67316109	67316109	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001129727.1	+1	reviewed	p.V370	0.000	32	0%	47	36.2%	8	37.5%	-	-	-	NULL
CTCF	10664	genome.wustl.edu	37	16	67663409	67663409	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_006565.2	+1	reviewed	p.S604fs	0.996	-	-	-	-	-	-	-	-	-	NULL
RLTPR	146206	genome.wustl.edu	37	16	67688390	67688390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001013838.1	+1	provisional	p.R1126Q	0.378	26	0%	68	38.2%	0	-	possibly_damaging(0.939)	tolerated(0.08)	deleterious(0.684)	NULL
SLC7A6	9057	genome.wustl.edu	37	16	68308966	68308966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001076785.1	+1	validated	p.A113T	1.000	245	0%	243	33.7%	2	50%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_AA_permease
TMCO7	79613	genome.wustl.edu	37	16	68943227	68943227	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024562.1	+1	validated	p.E638	0.976	183	0%	172	11%	9	22.2%	-	-	-	superfamily_ARM repeat,HMMPfam_DUF2435
PKD1L3	342372	genome.wustl.edu	37	16	72020277	72020277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000335106	-1	known	p.S226N	0.077	298	0%	341	12%	0	-	-	-	-	NULL
VAT1L	57687	genome.wustl.edu	37	16	77859281	77859281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_020927.1	+1	provisional	p.A168S	1.000	242	0%	207	36.7%	0	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	superfamily_GroES_like,superfamily_NAD(P)-bd
PRPF8	10594	genome.wustl.edu	37	17	1562031	1562031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_006445.3	-1	reviewed	p.S1722N	1.000	188	0%	219	30.6%	176	42.6%	benign(0.022)	deleterious(0)	neutral(0.446)	NULL
TRPV1	7442	genome.wustl.edu	37	17	3493227	3493227	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018727.5	-1	reviewed	p.V306	1.000	45	0%	93	14%	1	0%	-	-	-	superfamily_Ankyrin repeat
ZZEF1	23140	genome.wustl.edu	37	17	3992096	3992096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015113.3	-1	validated	p.A706V	0.000	160	0%	245	34.3%	7	42.8%	benign(0.028)	tolerated(0.12)	neutral(0.262)	NULL
FLCN	201163	genome.wustl.edu	37	17	17131282	17131282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_144997.5	-1	reviewed	p.R57Q	0.998	68	0%	87	40.2%	23	52.1%	probably_damaging(0.995)	tolerated(0.54)	neutral(0.465)	NULL
LGALS9B	284194	genome.wustl.edu	37	17	20361677	20361677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001042685.1	-1	validated	p.T51M	0.011	403	0.2%	416	29.6%	0	-	possibly_damaging(0.792)	deleterious(0.01)	deleterious(0.703)	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
ATAD5	79915	genome.wustl.edu	37	17	29167746	29167746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_024857.3	+1	provisional	p.R730C	1.000	175	0%	152	43.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYO1D	4642	genome.wustl.edu	37	17	31107762	31107762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015194.1	-1	provisional	p.V46I	0.922	186	0%	180	36.1%	14	57.1%	possibly_damaging(0.918)	tolerated(0.11)	deleterious(0.640)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
AP2B1	163	genome.wustl.edu	37	17	33977576	33977576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001030006.1	+1	reviewed	p.R522W	1.000	375	0.3%	332	34%	85	44.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM repeat
KRT23	25984	genome.wustl.edu	37	17	39080731	39080731	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015515.3	-1	reviewed	p.S389	0.000	417	0%	324	25.6%	197	49.2%	-	-	-	NULL
KRT38	8687	genome.wustl.edu	37	17	39593770	39593770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_006771.3	-1	reviewed	p.T422M	0.703	90	0%	151	35.8%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
MKS1	54903	genome.wustl.edu	37	17	56296056	56296056	+	Missense_Mutation	SNP	G	G	T	rs11653070	byCluster;by2Hit2Allele;byHapMap	TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_017777.3	-1	reviewed	p.L39I	1.000	233	0%	236	25%	16	25%	possibly_damaging(0.744)	tolerated(0.3)	neutral(0.302)	NULL
TSEN54	283989	genome.wustl.edu	37	17	73520522	73520522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000434205	+1	known	p.A154T	0.387	98	0%	132	28.8%	52	46.1%	unknown(0)	deleterious(0)	-	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14764024	14764024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001145029.1	+1	validated	p.E387G	0.000	97	0%	86	41.9%	0	-	possibly_damaging(0.806)	tolerated(0.42)	neutral(0.318)	NULL
TPGS2	25941	genome.wustl.edu	37	18	34408667	34408667	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015476.2	-1	provisional	p.L22	0.928	88	0%	128	34.4%	119	40.3%	-	-	-	NULL
MYO5B	4645	genome.wustl.edu	37	18	47480807	47480807	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001080467.2	-1	reviewed	e13-2	1.000	196	0%	212	33.5%	1	100%	-	-	-	-
DCC	1630	genome.wustl.edu	37	18	50848461	50848461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_005215.3	+1	reviewed	p.T700A	1.000	329	0.3%	281	37.4%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
WDR7	23335	genome.wustl.edu	37	18	54339866	54339866	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015285.2	+1	reviewed	p.D40	1.000	214	0%	168	30.4%	1	100%	-	-	-	HMMSmart_SM00320,superfamily_Prolyl oligopeptidase N-terminal domain,PatternScan_WD_REPEATS_1,HMMPfam_WD40
ZNF236	7776	genome.wustl.edu	37	18	74622022	74622022	+	Splice_Site	SNP	A	A	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_007345.3	+1	validated	e15-2	1.000	229	0.4%	177	39.5%	2	100%	-	-	-	-
PALM	5064	genome.wustl.edu	37	19	727077	727077	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002579.2	+1	reviewed	p.Q43*	1.000	13	0%	48	43.8%	1	0%	-	-	-	NULL
ABCA7	10347	genome.wustl.edu	37	19	1046330	1046330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_019112.3	+1	reviewed	p.R516H	0.084	19	0%	63	36.5%	16	50%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
DOT1L	84444	genome.wustl.edu	37	19	2216525	2216525	+	Silent	SNP	C	C	T	rs149636706	by1000genomes	TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000440640	+1	known	p.A510V	0.000	11	0%	28	46.4%	14	57.1%	-	-	-	NULL
LMNB2	84823	genome.wustl.edu	37	19	2431802	2431802	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_032737.2	-1	reviewed	p.V543	0.704	40	0%	76	36.8%	47	23.4%	-	-	-	HMMPfam_IF_tail,superfamily_SSF74853
HMG20B	10362	genome.wustl.edu	37	19	3575641	3575643	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_006339.2	+1	validated	p.K154in_frame_del	1.000:0.999:1.000	-	-	-	-	-	-	-	-	-	NULL
ANKRD24	170961	genome.wustl.edu	37	19	4208789	4208789	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_133475.1	+1	provisional	p.A287	0.727	84	0%	113	39.8%	1	0%	-	-	-	NULL
DPP9	91039	genome.wustl.edu	37	19	4685736	4685736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_139159.4	-1	reviewed	p.R645C	0.361	77	0%	128	31.2%	22	45.4%	probably_damaging(0.974)	deleterious(0.05)	deleterious(0.761)	superfamily_SSF53474
PTPRS	5802	genome.wustl.edu	37	19	5210528	5210528	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002850.3	-1	reviewed	p.Y1813	1.000	206	0%	259	11.6%	38	2.6%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
SH2D3A	10045	genome.wustl.edu	37	19	6754224	6754224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000437152	-1	known	p.R315Q	0.000	23	0%	32	34.4%	1	0%	unknown(0)	-	-	NULL
OR2Z1	284383	genome.wustl.edu	37	19	8842333	8842333	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001004699.1	+1	provisional	p.*315R	0.003	88	0%	100	38%	0	-	-	-	-	NULL
ZNF846	162993	genome.wustl.edu	37	19	9868543	9868543	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001077624.1	-1	validated	p.N404H	0.001	337	0%	304	32.9%	1	0%	possibly_damaging(0.865)	deleterious(0.03)	deleterious(0.700)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TYK2	7297	genome.wustl.edu	37	19	10464907	10464907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003331.4	-1	reviewed	p.H907N	1.000	39	0%	94	31.9%	61	36%	probably_damaging(0.997)	tolerated(0.93)	neutral(0.466)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP
SMARCA4	6597	genome.wustl.edu	37	19	11123672	11123672	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001128849.1	+1	reviewed	p.N774	0.882	113	0%	175	37.1%	142	38%	-	-	-	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
PALM3	342979	genome.wustl.edu	37	19	14165732	14165732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001145028.1	-1	validated	p.T236M	0.956	67	0%	126	15.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DDX39A	10212	genome.wustl.edu	37	19	14521052	14521052	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_005804.2	-1	reviewed	p.P236	0.196	89	0%	117	46.2%	236	42.3%	-	-	-	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
CALR3	125972	genome.wustl.edu	37	19	16593374	16593374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_145046.3	-1	validated	p.G269C	0.893	232	0%	267	32.2%	0	-	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	HMMPfam_Calreticulin,superfamily_ConA_like_lec_gl,superfamily_Calret_calnex_P
CHERP	10523	genome.wustl.edu	37	19	16641586	16641586	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_006387.5	-1	validated	p.I260	0.358	39	0%	71	29.6%	35	34.2%	-	-	-	HMMPfam_DUF618,superfamily_ENTH/VHS domain
URI1	8725	genome.wustl.edu	37	19	30500141	30500146	+	In_Frame_Del	DEL	GATGAC	GATGAC	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	GATGAC	GATGAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003796.2	+1	reviewed	p.DD309in_frame_del	0.086:0.089:0.000:0.023:0.013:0.000	-	-	-	-	-	-	-	-	-	NULL
ZNF540	163255	genome.wustl.edu	37	19	38103610	38103610	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_152606.3	+1	validated	p.R477*	0.000	291	0%	233	17.2%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
EIF3K	27335	genome.wustl.edu	37	19	39116732	39116732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_013234.2	+1	validated	p.Q115R	1.000	183	0%	237	31.6%	358	38.8%	benign(0.006)	tolerated(0.44)	neutral(0.013)	HMMPfam_SAC3_GANP,superfamily_ARM repeat
MAP3K10	4294	genome.wustl.edu	37	19	40711893	40711893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002446.3	+1	reviewed	p.R422W	1.000	29	0%	38	34.2%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NUMBL	9253	genome.wustl.edu	37	19	41173889	41173889	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_004756.3	-1	validated	p.Q438	1.000	4	0.000	35	0.771	12	58.3%	-	-	-	NULL
DHX34	9704	genome.wustl.edu	37	19	47883072	47883072	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014681.5	+1	reviewed	p.R938*	0.046	17	0%	38	31.6%	13	23%	-	-	-	NULL
LIG1	3978	genome.wustl.edu	37	19	48624460	48624460	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000234.1	-1	reviewed	p.D784	0.985	43	0%	70	40%	30	36.6%	-	-	-	HMMPfam_DNA_ligase_A_C
PRR12	57479	genome.wustl.edu	37	19	50119029	50119029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_020719.1	+1	validated	p.V1684I	0.000	46	0%	92	26.1%	37	27%	benign(0.359)	tolerated(0.14)	neutral(0.363)	NULL
MED25	81857	genome.wustl.edu	37	19	50332235	50332235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_030973.3	+1	reviewed	p.T138M	1.000	70	0%	126	39.7%	134	44.7%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
SIGLEC14	100049587	genome.wustl.edu	37	19	52147278	52147278	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001098612.1	-1	validated	p.L256	0.005	49	0%	51	33.3%	8	0%	-	-	-	superfamily_SSF48726
ZNF350	59348	genome.wustl.edu	37	19	52468942	52468942	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_021632.3	-1	validated	p.T255S	0.011	415	0%	372	40.6%	4	75%	benign(0.01)	tolerated(0.12)	neutral(0.261)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KIR3DL1	3811	genome.wustl.edu	37	19	55329941	55329941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_013289.2	+1	reviewed	p.N81T	0.000	226	0.4%	251	11.6%	0	-	benign(0.002)	tolerated(0.61)	neutral(0.004)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
RDH13	112724	genome.wustl.edu	37	19	55556639	55556639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_138412.3	-1	reviewed	p.A196T	1.000	13	0%	18	33.3%	19	31.5%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	superfamily_NAD(P)-binding Rossmann-fold domains
NLRP4	147945	genome.wustl.edu	37	19	56369555	56369555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_134444.4	+1	validated	p.R266G	0.467	103	0%	130	31.5%	0	-	benign(0.053)	deleterious(0.01)	neutral(0.409)	HMMPfam_NACHT
ZNF135	7694	genome.wustl.edu	37	19	58579278	58579278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003436.3	+1	validated	p.R476W	0.940	196	0.5%	210	34.8%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
IDH3B	3420	genome.wustl.edu	37	20	2644817	2644817	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_006899.2	-1	reviewed	p.G6	0.117	20	0%	37	37.8%	30	56.6%	-	-	-	NULL
MYBL2	4605	genome.wustl.edu	37	20	42331292	42331292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002466.2	+1	reviewed	p.R372C	1.000	50	0%	80	11.3%	55	20%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
RIMS4	140730	genome.wustl.edu	37	20	43386349	43386349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_182970.2	-1	validated	p.R138Q	0.998	85	0%	130	32.3%	6	66.6%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
HMGB1P1	10357	genome.wustl.edu	37	20	56063511	56063511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000452924	-1	known	p.E191D	0.997	410	0%	354	11.3%	3	0%	-	-	-	NULL
C20orf20	55257	genome.wustl.edu	37	20	61430980	61430980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_018270.4	+1	validated	p.K200N	1.000	62	0%	66	12.1%	42	11.9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ARFGAP1	55738	genome.wustl.edu	37	20	61907460	61907460	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_175609.1	+1	reviewed	p.G26	0.307	278	0%	327	31.8%	31	35.4%	-	-	-	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
USP16	10600	genome.wustl.edu	37	21	30409702	30409702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001032410.1	+1	reviewed	p.P185H	0.000	361	0%	320	35.9%	7	14.2%	benign(0.33)	tolerated(0.57)	neutral(0.110)	NULL
KCNJ6	3763	genome.wustl.edu	37	21	39086713	39086713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002240.2	-1	reviewed	p.E249D	0.999	221	0%	187	15%	1	0%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_IRK,superfamily_Ig_E-set
ADARB1	104	genome.wustl.edu	37	21	46603320	46603320	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015833.3	+1	validated	p.R431*	0.999	246	0%	208	31.2%	4	0%	-	-	-	HMMPfam_A_deamin,HMMSmart_SM00552,superfamily_Cytokine
ENSG00000093100	0	genome.wustl.edu	37	22	18382183	18382183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000432220	-1	known	p.L327I	0.000	375	0%	300	39%	0	-	-	-	-	NULL
USP18	11274	genome.wustl.edu	37	22	18652700	18652700	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_017414.3	+1	validated	p.G239	0.042	212	0%	237	34.2%	19	42.1%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
AIFM3	150209	genome.wustl.edu	37	22	21327646	21327646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_144704.2	+1	validated	p.E28K	0.998	40	0%	60	35%	2	0%	benign(0.045)	deleterious(0.03)	neutral(0.367)	NULL
LOC100287891	100287891	genome.wustl.edu	37	22	23241810	23241810	+	Missense_Mutation	SNP	C	C	T	rs192890899	by1000genomes	TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	XM_002343769.1	-1	model	p.A101T	0.023	614	0.7%	722	36.8%	117	0.8%	-	-	-	NULL
PATZ1	23598	genome.wustl.edu	37	22	31741246	31741246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014323.2	-1	reviewed	p.G115W	0.996	56	1.8%	72	30.6%	43	44.1%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
DEPDC5	9681	genome.wustl.edu	37	22	32302245	32302245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014662.2	+1	validated	p.R1494Q	1.000	44	0%	39	41%	16	43.7%	probably_damaging(0.997)	tolerated(0.27)	deleterious(0.500)	NULL
SYN3	8224	genome.wustl.edu	37	22	32937624	32937624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003490.3	-1	reviewed	p.E284K	1.000	394	0%	527	35.5%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
MCM5	4174	genome.wustl.edu	37	22	35796455	35796455	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_006739.3	+1	reviewed	p.G8	0.960	13	0%	36	36.1%	29	34.4%	-	-	-	NULL
KCNJ4	3761	genome.wustl.edu	37	22	38823649	38823649	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_004981.1	-1	reviewed	p.I163	1.000	19	0%	34	29.4%	0	-	-	-	-	HMMPfam_IRK,superfamily_Ig_E-set,superfamily_SSF81324
PRR5-ARHGAP8	553158	genome.wustl.edu	37	22	45243866	45243866	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_181334.4	+1	reviewed	p.G265fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
KIAA0930	23313	genome.wustl.edu	37	22	45601566	45601566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_015264.1	-1	validated	p.A125V	1.000	102	0%	128	35.2%	109	42.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2045
FAM118A	55007	genome.wustl.edu	37	22	45719234	45719234	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001104595.1	+1	validated	p.E76*	0.979	40	2.5%	78	38.5%	13	15.3%	-	-	-	NULL
ZBED4	9889	genome.wustl.edu	37	22	50277523	50277523	+	Silent	SNP	G	G	A	rs55748279	byCluster;byFrequency;by1000genomes	TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014838.2	+1	validated	p.P71	0.000	77	0%	121	41.3%	10	10%	-	-	-	NULL
SBF1	6305	genome.wustl.edu	37	22	50900532	50900532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002972.2	-1	validated	p.A805T	1.000	47	0%	64	34.4%	23	21.7%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ENSG00000210100	0	genome.wustl.edu	37	MT	4284	4284	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000387365	+1	novel	NULL	NULL	9	0.000	6	1.000	161	98.7%	-	-	-	-
PIGA	5277	genome.wustl.edu	37	X	15349444	15349444	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002641.2	-1	reviewed	p.V203	0.988	475	0%	397	37.8%	4	100%	-	-	-	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
ZRSR2	8233	genome.wustl.edu	37	X	15841226	15841226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_005089.3	+1	reviewed	p.R437Q	0.026	17	0%	29	27.6%	7	0%	unknown(0)	tolerated(0.35)	-	NULL
BEND2	139105	genome.wustl.edu	37	X	18198721	18198721	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_153346.4	-1	validated	p.N446	0.000	816	0%	739	36%	0	-	-	-	-	NULL
ENSG00000237836	0	genome.wustl.edu	37	X	18911458	18911458	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	ENST00000439295	+1	known	NULL	0.000	14	0%	13	30.8%	24	83.3%	-	-	-	-
PHKA2	5256	genome.wustl.edu	37	X	18926138	18926138	+	Silent	SNP	G	G	A	rs181179616	by1000genomes	TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_000292.2	-1	reviewed	p.H799	0.985	122	0%	141	28.4%	5	0%	-	-	-	HMMPfam_PHK_AB
FTHL17	53940	genome.wustl.edu	37	X	31089528	31089528	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_031894.2	-1	reviewed	p.K181N	0.000	33	0%	77	42.9%	0	-	probably_damaging(0.999)	tolerated(0.44)	deleterious(0.503)	NULL
APEX2	27301	genome.wustl.edu	37	X	55027009	55027009	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_014481.2	+1	reviewed	p.T52S	1.000	155	0%	161	36.6%	32	0%	benign(0.231)	tolerated(0.1)	neutral(0.309)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
DLG3	1741	genome.wustl.edu	37	X	69668801	69668801	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_021120.3	+1	reviewed	p.I132	0.991	289	0%	314	42.4%	0	-	-	-	-	HMMPfam_PDZ,superfamily_PDZ domain-like
GPR174	84636	genome.wustl.edu	37	X	78427451	78427451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_032553.1	+1	validated	p.A316E	0.076	228	0%	193	32.6%	0	-	benign(0.003)	tolerated(0.41)	neutral(0.015)	NULL
COL4A6	1288	genome.wustl.edu	37	X	107422034	107422034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_001847.2	-1	reviewed	p.R800W	0.618	176	0%	185	30.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Collagen
KLHL13	90293	genome.wustl.edu	37	X	117043367	117043367	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_033495.3	-1	reviewed	p.W421C	1.000	272	0%	243	37.4%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
CUL4B	8450	genome.wustl.edu	37	X	119675503	119675503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_003588.3	-1	reviewed	p.R484Q	1.000	382	0%	293	42.3%	19	0%	benign(0.032)	tolerated(0.14)	neutral(0.251)	HMMPfam_Cullin,superfamily_Cullin repeat
ACTRT1	139741	genome.wustl.edu	37	X	127185447	127185447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_138289.3	-1	reviewed	p.H247Y	0.936	133	0%	163	34.4%	0	-	benign(0.08)	deleterious(0)	neutral(0.450)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
PLXNA3	55558	genome.wustl.edu	37	X	153694105	153694105	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_017514.3	+1	reviewed	p.L816R	1.000	18	0%	34	23.5%	8	0%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_PSI,HMMSmart_PSI
MPP1	4354	genome.wustl.edu	37	X	154012303	154012303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17U-01A-21D-A12J-09	TCGA-D1-A17U-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	61e808b0-4895-45fe-8ccd-738babf435ac	68f53ab0-4fea-449e-a071-267f25101388	NM_002436.3	-1	reviewed	p.G289R	1.000	239	0%	289	34.9%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
