Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
EXOC6	54536	broad.mit.edu	37	10	94700482	94700482	+	Splice_Site	SNP	A	A	T			TCGA-HT-8019-01A-21D-2395-08	TCGA-HT-8019-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02719fb3-2c30-4afa-b0e1-b51654332bdb	df62fbc1-7e1c-4a99-a231-47ec5ddfc1be	g.chr10:94700482A>T	uc010qnr.2	+	14	1404	c.1261_splice	c.e14-2	p.G421_splice	EXOC6_uc001kie.3_Splice_Site_p.G400_splice|EXOC6_uc001kig.3_Splice_Site_p.G405_splice|EXOC6_uc009xub.3_Splice_Site_p.G405_splice|EXOC6_uc009xuc.3_Splice_Site_p.G302_splice|EXOC6_uc001kih.3_Splice_Site	NM_001013848	NP_001013870	Q8TAG9	EXOC6_HUMAN	Homo sapiens exocyst complex component 6 (EXOC6), transcript variant 2, mRNA.	405					protein transport|vesicle docking involved in exocytosis	exocyst				cervix(1)|endometrium(3)|kidney(2)|large_intestine(13)|lung(4)|ovary(1)|skin(1)|urinary_tract(1)	26		Colorectal(252;0.123)				TTTGTATTTTAGGGTTATGGT	0.313000													4	26					0	0	1	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72339497	72339497	+	RNA	SNP	T	T	C	rs390732	by1000genomes	TCGA-HT-8019-01A-21D-2395-08	TCGA-HT-8019-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02719fb3-2c30-4afa-b0e1-b51654332bdb	df62fbc1-7e1c-4a99-a231-47ec5ddfc1be	g.chr7:72339497T>C	uc010lal.1	-	0		c.159A>G								Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.																		TCCTCAGATTTGTCCCACCAC	0.582000													4	31					0	0	1	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85056021	85056021	+	RNA	SNP	T	T	C	rs1062001		TCGA-HT-8019-01A-21D-2395-08	TCGA-HT-8019-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02719fb3-2c30-4afa-b0e1-b51654332bdb	df62fbc1-7e1c-4a99-a231-47ec5ddfc1be	g.chr15:85056021T>C	uc002bkm.2	-	5		c.539A>G								Homo sapiens golgin A6 family-like 5 (pseudogene) (GOLGA6L5), non-coding RNA.																		GTAGCTGCTCTACCTTAGATG	0.502000													3	14					0	0	1	0	0
FAM86C1	55199	broad.mit.edu	37	8	8088411	8088411	+	RNA	SNP	A	A	G			TCGA-HT-8019-01A-21D-2395-08	TCGA-HT-8019-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02719fb3-2c30-4afa-b0e1-b51654332bdb	df62fbc1-7e1c-4a99-a231-47ec5ddfc1be	g.chr8:8088411A>G	uc011kwt.2	+	1		c.275A>G			FAM86C1_uc010lrq.2_Non-coding_Transcript|FAM86C1_uc003wsf.4_Non-coding_Transcript			Q9NVL1	FA86C_HUMAN	Homo sapiens family with sequence similarity 86, member A pseudogene (FLJ10661), transcript variant 1, non-coding RNA.									p.Q48R(3)		lung(1)	1						GAGCTGCTGCAGGATATTTTG	0.488000													5	46					0	0	1	0	0
LRRC37A11P	342666	broad.mit.edu	37	17	37188613	37188613	+	RNA	SNP	C	C	T	rs35008241	by1000genomes	TCGA-HT-8019-01A-21D-2395-08	TCGA-HT-8019-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02719fb3-2c30-4afa-b0e1-b51654332bdb	df62fbc1-7e1c-4a99-a231-47ec5ddfc1be	g.chr17:37188613C>T	uc002hrd.1	+	0		c.2455C>T								Homo sapiens FLJ43826 protein (FLJ43826), non-coding RNA.																		TGTCGTGTATCGATCTCAGCC	0.512000													6	133					0	0	1	0	0
FEM1A	55527	broad.mit.edu	37	19	4793724	4793724	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-8019-01A-21D-2395-08	TCGA-HT-8019-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02719fb3-2c30-4afa-b0e1-b51654332bdb	df62fbc1-7e1c-4a99-a231-47ec5ddfc1be	g.chr19:4793724C>A	uc002mbf.3	+	0	1997	c.1858C>A	c.(1858-1860)Ctg>Atg	p.L620M	AK126532_uc002mbg.1_Non-coding_Transcript	NM_018708	NP_061178	Q9BSK4	FEM1A_HUMAN	Homo sapiens fem-1 homolog a (C. elegans) (FEM1A), mRNA.	620					regulation of ubiquitin-protein ligase activity	cytoplasm	binding|ubiquitin-protein ligase activity	p.L620M(2)		breast(1)|central_nervous_system(2)|endometrium(2)|kidney(1)|large_intestine(2)|lung(5)|ovary(1)|prostate(1)|skin(1)|urinary_tract(1)	17		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		GGCCTACGAGCTGCTGGACGA	0.607000													5	28					1	1	1	1	0
MICA	100507436	broad.mit.edu	37	6	31378387	31378387	+	Silent	SNP	T	T	C	rs78945208	by1000genomes	TCGA-HT-8019-01A-21D-2395-08	TCGA-HT-8019-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02719fb3-2c30-4afa-b0e1-b51654332bdb	df62fbc1-7e1c-4a99-a231-47ec5ddfc1be	g.chr6:31378387T>C	uc003ntk.1	+	1	177	c.138T>C	c.(136-138)ctT>ctC	p.L46L	MICA_uc003rxz.1_5'UTR|MICA_uc021yun.1_5'UTR|MICA_uc021yuo.1_5'UTR	NM_001177519	NP_001170990	Q29983	MICA_HUMAN	Homo sapiens MHC class I polypeptide-related sequence A (MICA), transcript variant 1 (allele MICA*00801), mRNA.	46					antigen processing and presentation|cytolysis|defense response to bacterium|defense response to virus|gamma-delta T cell activation|immune response to tumor cell|response to DNA damage stimulus|response to heat|stimulatory C-type lectin receptor signaling pathway	MHC class I protein complex|cell surface|cytoplasm|extracellular space|integral to plasma membrane	natural killer cell lectin-like receptor binding			breast(1)|endometrium(3)|kidney(1)	5		Ovarian(999;0.0253)				CAGGGTTTCTTGCTGAGGTAC	0.532000													5	39					0	0	1	0	0
MST1P2	11209	broad.mit.edu	37	1	16974141	16974141	+	RNA	DEL	G	G	-			TCGA-HT-8019-01A-21D-2395-08	TCGA-HT-8019-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02719fb3-2c30-4afa-b0e1-b51654332bdb	df62fbc1-7e1c-4a99-a231-47ec5ddfc1be	g.chr1:16974141delG	uc009vow.2	+	4		c.951delG			CROCCP2_uc001azg.1_5'Flank|CROCCP2_uc001azi.1_5'Flank|MST1P2_uc010ocg.1_Non-coding_Transcript|MST1P2_uc010och.2_Intron|MST1P2_uc010oci.1_Non-coding_Transcript|MST1P2_uc001azk.2_Intron|MST1P2_uc009vox.3_Intron|MST1P2_uc001azm.4_Intron					Homo sapiens macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2 (MST1P2), non-coding RNA.																		TGGCTTGGCCGGGGAGGTCAG	0.667													3	3	---	---	---	---					
