Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
RNF139	11236	broad.mit.edu	37	8	125487509	125487509	+	Silent	SNP	C	C	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr8:125487509C>T	uc003yrc.3	+	0	502	c.159C>T	c.(157-159)ctC>ctT	p.L53L	CR933665_uc003yrb.3_5'Flank	NM_007218	NP_009149	Q8WU17	RN139_HUMAN	Homo sapiens ring finger protein 139 (RNF139), mRNA.	53					negative regulation of cell proliferation|regulation of protein ubiquitination	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity|ubiquitin-protein ligase activity|zinc ion binding			breast(1)|endometrium(3)|kidney(3)|large_intestine(6)|liver(1)|lung(4)|prostate(1)|skin(1)	20	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			GCATCGTGCTCCAGATCTTCC	0.647000													20	27					0	0	1	0	0
CLTA	1211	broad.mit.edu	37	9	36209297	36209297	+	Silent	SNP	C	C	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr9:36209297C>T	uc003zzc.3	+	4	720	c.519C>T	c.(517-519)ttC>ttT	p.F173F	CLTA_uc022bgo.1_Intron|CLTA_uc022bgp.1_Intron|CLTA_uc011lpk.2_Intron|CLTA_uc003zzd.3_Silent_p.F173F|CLTA_uc003zze.3_Intron	NM_007096	NP_009027	P09496	CLCA_HUMAN	Homo sapiens clathrin, light chain A (CLTA), transcript variant 2, mRNA.	173					axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol	structural molecule activity			central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|lung(1)	6			STAD - Stomach adenocarcinoma(86;0.228)			AACAACCCTTCGCTGACGTGA	0.403000													30	43					0	0	1	0	0
HOXB4	3214	broad.mit.edu	37	17	46654346	46654346	+	Missense_Mutation	SNP	G	G	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr17:46654346G>T	uc002inp.3	-	1	556	c.494C>A	c.(493-495)tCt>tAt	p.S165Y	HOXB3_uc010wlm.2_Intron|HOXB3_uc010dbf.3_Intron|HOXB3_uc010dbg.3_Intron|HOXB3_uc002ino.3_5'Flank|HOXB3_uc010wlk.2_5'Flank|HOXB3_uc010wll.2_Intron	NM_024015	NP_076920	P17483	HXB4_HUMAN	Homo sapiens homeobox B4 (HOXB4), mRNA.	165						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|kidney(2)|large_intestine(1)|lung(2)|ovary(1)|urinary_tract(2)	9						GGCGGTCCGAGAGCGCTTGGG	0.592000													46	35					2.14674e-31	2.6733e-31	1	1	0
AHNAK	79026	broad.mit.edu	37	11	62301415	62301415	+	Silent	SNP	C	C	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr11:62301415C>T	uc001ntl.3	-	4	774	c.474G>A	c.(472-474)acG>acA	p.T158T	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	Homo sapiens AHNAK nucleoprotein (AHNAK), transcript variant 1, mRNA.	158					nervous system development	nucleus	protein binding			NS(3)|autonomic_ganglia(1)|breast(10)|central_nervous_system(5)|endometrium(17)|haematopoietic_and_lymphoid_tissue(2)|kidney(33)|large_intestine(40)|liver(1)|lung(108)|ovary(13)|pancreas(4)|prostate(5)|skin(16)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(6)	268		Melanoma(852;0.155)				CAGTGTAGGCCGTGACCCTTC	0.532000													17	12					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7584156	7584156	+	Missense_Mutation	SNP	G	G	C			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr6:7584156G>C	uc003mxp.1	+	23	6940	c.6661G>C	c.(6661-6663)Gag>Cag	p.E2221Q	DSP_uc003mxq.1_Missense_Mutation_p.E1622Q|DSP_uc021yle.1_Missense_Mutation_p.E1778Q	NM_004415	NP_004406	P15924	DESP_HUMAN	Homo sapiens desmoplakin (DSP), transcript variant 1, mRNA.	2221	Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			biliary_tract(1)|breast(6)|central_nervous_system(7)|cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(16)|liver(2)|lung(27)|ovary(4)|prostate(1)|skin(8)|stomach(3)|upper_aerodigestive_tract(7)|urinary_tract(5)	101	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GACCGTCACTGAGCTAGTAGA	0.458000													19	31					0	0	1	0	0
RBM33	155435	broad.mit.edu	37	7	155532557	155532557	+	Missense_Mutation	SNP	A	A	C			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr7:155532557A>C	uc010lqk.1	+	11	2254	c.1886A>C	c.(1885-1887)cAc>cCc	p.H629P	RBM33_uc011kvv.1_Missense_Mutation_p.H438P	NM_053043	NP_444271	Q96EV2	RBM33_HUMAN	Homo sapiens RNA binding motif protein 33 (RBM33), mRNA.	629	His-rich.|Pro-rich.						RNA binding|nucleotide binding			breast(3)|cervix(1)|endometrium(8)|kidney(3)|large_intestine(4)|lung(6)|ovary(1)|upper_aerodigestive_tract(1)	27	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)		ccaccacagcacccgccgcag	0.706000													4	30					0	0	1	0	0
MAML1	9794	broad.mit.edu	37	5	179201053	179201053	+	Silent	SNP	G	G	A			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr5:179201053G>A	uc003mkm.3	+	4	2489	c.2226G>A	c.(2224-2226)gtG>gtA	p.V742V	MAML1_uc003mkn.1_Intron	NM_014757	NP_055572	Q92585	MAML1_HUMAN	Homo sapiens mastermind-like 1 (Drosophila) (MAML1), mRNA.	742					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	peptide antigen binding|protein kinase binding|transcription coactivator activity			central_nervous_system(1)|cervix(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(4)|lung(16)|ovary(2)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)	36	all_cancers(89;0.000197)|all_epithelial(37;6.7e-05)|Renal(175;0.000159)|Lung NSC(126;0.00121)|all_lung(126;0.00218)	all_cancers(40;0.0308)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ACCGGGGTGTGGCTCAGTTCC	0.592000													16	26					0	0	1	0	0
TNRC6A	27327	broad.mit.edu	37	16	24788620	24788620	+	Missense_Mutation	SNP	C	C	G			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr16:24788620C>G	uc002dmm.3	+	4	644	c.530C>G	c.(529-531)gCt>gGt	p.A177G	TNRC6A_uc010bxs.3_5'UTR	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	Homo sapiens trinucleotide repeat containing 6A (TNRC6A), mRNA.	177					negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	RNA binding|nucleotide binding			breast(1)|cervix(1)|endometrium(13)|kidney(5)|large_intestine(13)|liver(1)|lung(20)|ovary(3)|skin(2)|soft_tissue(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	64				GBM - Glioblastoma multiforme(48;0.0394)		GAAAGCAGTGCTTTAACAAAT	0.433000													21	28					0	0	1	0	0
KCTD10	83892	broad.mit.edu	37	12	109889450	109889450	+	Silent	SNP	G	G	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr12:109889450G>T	uc001toj.1	-	6	2632	c.919C>A	c.(919-921)Cgg>Agg	p.R307R	KCTD10_uc001toh.1_Non-coding_Transcript|KCTD10_uc009zvi.1_Silent_p.R272R|KCTD10_uc001toi.1_Silent_p.R298R|KCTD10_uc001tok.1_Silent_p.R117R	NM_031954	NP_114160	Q9H3F6	BACD3_HUMAN	Homo sapiens potassium channel tetramerisation domain containing 10 (KCTD10), mRNA.	298					proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination	Cul3-RING ubiquitin ligase complex|cytoplasm|nucleus|voltage-gated potassium channel complex	voltage-gated potassium channel activity			endometrium(2)|kidney(1)|large_intestine(2)|lung(4)|prostate(1)	10						TGGATCCTCCGCACGCGCTCG	0.721000													3	40					2.56e-06	2.86373e-06	1	1	0
FLJ43315	644316	broad.mit.edu	37	GL000211.1	107462	107462	+	RNA	SNP	A	A	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chrGL000211.1:107462A>T	uc003boa.3	+	4		c.1002A>T								Homo sapiens asparagine synthetase pseudogene (FLJ43315), non-coding RNA.																		GTAAGGGTCAATTTTTTATAT	0.294000													4	94					0	0	1	0	0
WAPAL	23063	broad.mit.edu	37	10	88227091	88227091	+	Missense_Mutation	SNP	A	A	G			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr10:88227091A>G	uc001kdn.3	-	9	2435	c.2426T>C	c.(2425-2427)aTc>aCc	p.I809T	WAPAL_uc009xsv.3_Missense_Mutation_p.I86T|WAPAL_uc001kdo.3_Missense_Mutation_p.I772T|WAPAL_uc009xsw.3_Missense_Mutation_p.I766T	NM_015045	NP_055860	Q7Z5K2	WAPL_HUMAN	Homo sapiens wings apart-like homolog (Drosophila) (WAPAL), mRNA.	772	WAPL.				cell division|interspecies interaction between organisms|mitosis|negative regulation of DNA replication|negative regulation of chromatin binding|negative regulation of sister chromatid cohesion|protein localization to chromatin|regulation of cohesin localization to chromatin	chromatin|cohesin complex|cytoplasm	protein binding	p.I772T(1)		breast(2)|endometrium(2)|kidney(5)|large_intestine(6)|lung(13)|ovary(2)|stomach(1)	31						GAGCCTTCGGATTTTTTCTTT	0.368000													50	47					0	0	1	0	0
RHOC	389	broad.mit.edu	37	1	113244309	113244309	+	Silent	SNP	C	C	G			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr1:113244309C>G	uc001ecp.1	-	5	735	c.435G>C	c.(433-435)cgG>cgC	p.R145R	RHOC_uc001ecq.1_Silent_p.R145R|RHOC_uc001ecr.1_Silent_p.R145R|RHOC_uc009wgk.1_Silent_p.R145R	NM_001042679	NP_786886	P08134	RHOC_HUMAN	Homo sapiens ras homolog gene family, member C (RHOC), transcript variant 3, mRNA.	145					axon guidance|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity|signal transducer activity			endometrium(1)|large_intestine(3)|lung(3)|ovary(1)|upper_aerodigestive_tract(1)	9	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCGCCATGTCCCGGCCTTCCT	0.572000													49	74					0	0	1	0	0
TM9SF4	9777	broad.mit.edu	37	20	30729306	30729306	+	Missense_Mutation	SNP	T	T	G			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr20:30729306T>G	uc002wxj.2	+	3	471	c.236T>G	c.(235-237)gTg>gGg	p.V79G	TM9SF4_uc010ztr.1_Intron|TM9SF4_uc010zts.1_Intron|TM9SF4_uc002wxk.2_Missense_Mutation_p.V62G	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	Homo sapiens transmembrane 9 superfamily protein member 4 (TM9SF4), mRNA.	79						integral to membrane				central_nervous_system(2)|kidney(1)|large_intestine(4)|lung(8)|pancreas(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	20			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GCAGGAGAGGTGCTGAGAGGG	0.547000													5	38					0	0	1	0	0
CAPN5	726	broad.mit.edu	37	11	76796027	76796027	+	Missense_Mutation	SNP	T	T	C			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr11:76796027T>C	uc009yup.3	+	1	280	c.95T>C	c.(94-96)tTc>tCc	p.F32S	CAPN5_uc001oxx.3_Missense_Mutation_p.F32S|CAPN5_uc009yuq.3_Missense_Mutation_p.F68S|CAPN5_uc001oxy.3_Missense_Mutation_p.F72S	NM_004055	NP_004046	O15484	CAN5_HUMAN	Homo sapiens calpain 5 (CAPN5), mRNA.	32	Calpain catalytic.				proteolysis|signal transduction	intracellular	calcium-dependent cysteine-type endopeptidase activity			NS(1)|breast(2)|endometrium(2)|large_intestine(7)|lung(17)|urinary_tract(1)	30						GACCCCCTCTTCCCCGCCACT	0.637000													4	32					0	0	1	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47587774	47587774	+	Silent	SNP	C	C	G			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr20:47587774C>G	uc002xtx.4	+	9	1460	c.1308C>G	c.(1306-1308)ctC>ctG	p.L436L		NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	Homo sapiens ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) (ARFGEF2), mRNA.	436					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	Golgi membrane|cytosol	ARF guanyl-nucleotide exchange factor activity			breast(7)|cervix(2)|endometrium(8)|kidney(4)|large_intestine(11)|lung(19)|ovary(1)|prostate(3)|skin(5)|stomach(1)|upper_aerodigestive_tract(2)	63			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			AGCAATATCTCTGTGTGGCCT	0.458000													40	54					0	0	1	0	0
RBM3	5935	broad.mit.edu	37	X	48434952	48434952	+	Missense_Mutation	SNP	T	T	G			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chrX:48434952T>G	uc004dkf.2	+	4	607	c.373T>G	c.(373-375)Tat>Gat	p.Y125D		NM_006743	NP_006734	P98179	RBM3_HUMAN	Homo sapiens RNA binding motif (RNP1, RRM) protein 3 (RBM3), mRNA.	125	Gly-rich.				positive regulation of translation	dendrite|nucleus	RNA binding|nucleotide binding			endometrium(1)|large_intestine(1)|lung(1)|ovary(1)	4						ACCTGGAGGGTATGGATATGG	0.498000													3	24					0	0	1	0	0
NOG	9241	broad.mit.edu	37	17	54672182	54672182	+	Missense_Mutation	SNP	C	C	G			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr17:54672182C>G	uc002iup.2	+	0	1123	c.598C>G	c.(598-600)Ctc>Gtc	p.L200V		NM_005450	NP_005441	Q13253	NOGG_HUMAN	Homo sapiens noggin (NOG), mRNA.	200					BMP signaling pathway|cartilage development|cell differentiation in hindbrain|dorsal/ventral pattern formation|embryonic digit morphogenesis|embryonic skeletal joint morphogenesis|epithelial to mesenchymal transition|fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation|middle ear morphogenesis|negative regulation of BMP signaling pathway|negative regulation of astrocyte differentiation|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of cytokine activity|negative regulation of osteoblast differentiation|osteoblast differentiation|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of glomerulus development|somatic stem cell maintenance|wound healing	extracellular space	cytokine binding|protein homodimerization activity			ovary(1)	1	Breast(9;5.24e-08)					GTCCGTGCACCTCACGGTGCT	0.657000													93	72					0	0	1	0	0
NCAM2	4685	broad.mit.edu	37	21	22710734	22710734	+	Missense_Mutation	SNP	A	A	C			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr21:22710734A>C	uc002yld.2	+	7	1173	c.924A>C	c.(922-924)aaA>aaC	p.K308N	NCAM2_uc011acb.2_Missense_Mutation_p.K166N|NCAM2_uc011acc.2_Missense_Mutation_p.K333N	NM_004540	NP_004531	O15394	NCAM2_HUMAN	Homo sapiens neural cell adhesion molecule 2 (NCAM2), mRNA.	308	Ig-like C2-type 4.				neuron cell-cell adhesion	integral to membrane|plasma membrane				breast(4)|cervix(2)|endometrium(8)|kidney(6)|large_intestine(22)|liver(4)|lung(49)|ovary(4)|prostate(4)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	108		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		TACAGCTTAAAAATGAAACTA	0.388000													54	73					0	0	1	0	0
ELAVL2	1993	broad.mit.edu	37	9	23762097	23762097	+	Missense_Mutation	SNP	G	G	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr9:23762097G>T	uc003zpu.3	-	1	411	c.136C>A	c.(136-138)Ctt>Att	p.L46I	ELAVL2_uc003zps.3_Missense_Mutation_p.L46I|ELAVL2_uc003zpt.3_Missense_Mutation_p.L46I|ELAVL2_uc003zpv.3_Missense_Mutation_p.L46I|ELAVL2_uc003zpw.3_Missense_Mutation_p.L46I	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	Homo sapiens ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) (ELAVL2), transcript variant 1, mRNA.	46	RRM 1.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			breast(1)|central_nervous_system(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(8)|lung(20)|ovary(2)|skin(1)|stomach(1)|urinary_tract(1)	39				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		TTCTGAGGAAGGTAGTTGACT	0.428000													4	115					0.00024832	0.000260145	1	1	0
CREBBP	1387	broad.mit.edu	37	16	3860637	3860637	+	Silent	SNP	G	G	A			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr16:3860637G>A	uc002cvv.3	-	2	1146	c.942C>T	c.(940-942)atC>atT	p.I314I	CREBBP_uc002cvw.3_Silent_p.I314I	NM_004380	NP_004371	Q92793	CBP_HUMAN	Homo sapiens CREB binding protein (CREBBP), transcript variant 1, mRNA.	314	Interaction with SRCAP.				N-terminal peptidyl-lysine acetylation|cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	MyoD binding|histone acetyltransferase activity|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			NS(1)|breast(5)|central_nervous_system(4)|cervix(3)|endometrium(12)|haematopoietic_and_lymphoid_tissue(125)|kidney(5)|large_intestine(32)|lung(43)|ovary(18)|pancreas(2)|prostate(6)|skin(9)|soft_tissue(1)|stomach(3)|upper_aerodigestive_tract(5)|urinary_tract(21)	295		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		AAGTATTCTTGATATCTGTAG	0.517000			"""T, N, F, Mis, O"""	"""MLL, MORF, RUNXBP2"""	"""ALL, AML, DLBCL, B-NHL """		Rubinstein-Taybi syndrome						26	58					0	0	1	0	0
ELL3	80237	broad.mit.edu	37	15	44067740	44067740	+	Missense_Mutation	SNP	C	C	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr15:44067740C>T	uc001zsw.1	-	4	955	c.552G>A	c.(550-552)atG>atA	p.M184I	ELL3_uc001zsv.1_Missense_Mutation_p.M138I|ELL3_uc001zsx.1_Missense_Mutation_p.M69I|SERF2_uc001zsy.3_5'Flank|SERF2_uc001zsz.4_5'Flank	NM_025165	NP_079441	Q9HB65	ELL3_HUMAN	Homo sapiens elongation factor RNA polymerase II-like 3 (ELL3), mRNA.	184					positive regulation of transcription elongation, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|spermatogenesis|transcription elongation from RNA polymerase II promoter	transcription elongation factor complex				cervix(1)|kidney(1)|large_intestine(5)|lung(4)|ovary(1)|skin(1)	13		all_cancers(109;7.57e-15)|all_epithelial(112;3.51e-12)|Lung NSC(122;4.72e-08)|all_lung(180;4.9e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;7.81e-07)		CCCACTGTGCCATGTGCTCCC	0.498000											OREG0023092	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	48					0	0	1	0	0
IFITM3	10410	broad.mit.edu	37	11	320649	320649	+	Silent	SNP	G	G	A	rs11553885	by1000genomes	TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr11:320649G>A	uc001lpa.2	-	0	266	c.165C>T	c.(163-165)ccC>ccT	p.P55P	BC040735_uc001loz.3_Intron	NM_021034	NP_066362	Q01628	IFM3_HUMAN	Homo sapiens interferon induced transmembrane protein 3 (IFITM3), mRNA.	55					response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane		p.P55P(10)		central_nervous_system(7)|endometrium(7)|kidney(2)|large_intestine(1)|lung(1)	18		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		CGACATGGTCGGGCACGGAGG	0.637000													4	41					0	0	1	0	0
RGNEF	64283	broad.mit.edu	37	5	73207182	73207182	+	Missense_Mutation	SNP	A	A	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr5:73207182A>T	uc010izf.3	+	34	4906	c.4730A>T	c.(4729-4731)aAc>aTc	p.N1577I	RGNEF_uc011csq.2_Missense_Mutation_p.N1577I|RGNEF_uc021yam.1_Missense_Mutation_p.N1577I|RGNEF_uc011csr.2_Missense_Mutation_p.N1264I|RGNEF_uc003kcz.4_Missense_Mutation_p.N541I|RGNEF_uc003kda.4_Missense_Mutation_p.N497I	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Homo sapiens 190 kDa guanine nucleotide exchange factor (RGNEF), transcript variant 1, mRNA.	1577	Interaction with microtubules (By similarity).|Mediates cytoplasmic retention and interaction with MAPK8IP1 (By similarity).				cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	RNA binding|Rho guanyl-nucleotide exchange factor activity|metal ion binding						Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		ATGTCATTTAACACTTTCAAC	0.363000													40	77					0	0	1	0	0
MGC70870	403340	broad.mit.edu	37	GL000205.1	117245	117245	+	RNA	SNP	C	C	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chrGL000205.1:117245C>T	uc002kgk.4	+	0		c.623C>T								Homo sapiens C-terminal binding protein 2 pseudogene (MGC70870), non-coding RNA.																		GAGGAATTCGCCCCCAGATCA	0.527000													3	27					0	0	1	0	0
FAM60A	58516	broad.mit.edu	37	12	31448170	31448170	+	Missense_Mutation	SNP	G	G	A			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr12:31448170G>A	uc001rkc.3	-	1	543	c.301C>T	c.(301-303)Cat>Tat	p.H101Y	FAM60A_uc010sjz.2_Missense_Mutation_p.H76Y|FAM60A_uc001rkd.3_Missense_Mutation_p.H76Y|FAM60A_uc010ska.2_Missense_Mutation_p.H76Y|FAM60A_uc001rke.3_Missense_Mutation_p.H76Y|FAM60A_uc010skb.2_Intron	NM_021238	NP_067061	Q9NP50	FA60A_HUMAN	Homo sapiens family with sequence similarity 60, member A (FAM60A), transcript variant 2, mRNA.	76										large_intestine(1)|lung(2)	3	all_cancers(9;5.22e-13)|all_epithelial(9;4e-13)|all_lung(12;1.2e-11)|Lung NSC(12;2.17e-09)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0207)|Lung SC(12;0.0592)|Esophageal squamous(101;0.162)					GGACTAACATGATTCCAGTTT	0.373000													199	157					0	0	1	0	0
PEAK1	79834	broad.mit.edu	37	15	77450971	77450971	+	Missense_Mutation	SNP	C	C	A			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr15:77450971C>A	uc021sqy.1	-	5	3781	c.3205G>T	c.(3205-3207)Gat>Tat	p.D1069Y	PEAK1_uc002bcn.2_Missense_Mutation_p.D1069Y	NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	Homo sapiens NKF3 kinase family member (PEAK1), mRNA.	1069					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding										CCCCTGCCATCTTGCTTCCCA	0.473000													22	26					1.10923e-09	1.26223e-09	1	1	0
ZAN	7455	broad.mit.edu	37	7	100350474	100350474	+	Missense_Mutation	SNP	T	T	C			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr7:100350474T>C	uc003uwj.3	+	13	2911	c.2746T>C	c.(2746-2748)Tcc>Ccc	p.S916P	ZAN_uc003uwk.3_Missense_Mutation_p.S916P|ZAN_uc003uwl.3_Non-coding_Transcript|ZAN_uc010lhh.3_Non-coding_Transcript|ZAN_uc010lhi.3_Non-coding_Transcript	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	Homo sapiens zonadhesin (ZAN), transcript variant 3, mRNA.	916	66 X heptapeptide repeats (approximate) (mucin-like domain).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane		p.S916P(3)		NS(2)|breast(3)|central_nervous_system(3)|endometrium(21)|kidney(6)|large_intestine(18)|lung(60)|ovary(4)|pancreas(3)|prostate(5)|skin(8)|stomach(3)|upper_aerodigestive_tract(3)	139	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACCCACCATCTCCACGGAAAA	0.502000													11	435					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39801030	39801030	+	Missense_Mutation	SNP	A	A	G	rs139514822		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr1:39801030A>G	uc021olw.1	+	0	4090	c.4090A>G	c.(4090-4092)Aag>Gag	p.K1364E	MACF1_uc021ols.1_Intron|MACF1_uc001cdc.2_Intron|MACF1_uc021olt.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdb.1_Intron	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	Homo sapiens microtubule-actin crosslinking factor 1 (MACF1), transcript variant 1, mRNA.	2929					Golgi to plasma membrane protein transport|Wnt receptor signaling pathway|cell cycle arrest|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|wound healing	Golgi apparatus|microtubule|ruffle membrane	ATPase activity|actin filament binding|calcium ion binding|microtubule binding			breast(11)|central_nervous_system(5)|endometrium(18)|haematopoietic_and_lymphoid_tissue(1)|kidney(11)|large_intestine(36)|lung(78)|ovary(12)|prostate(2)|skin(9)|stomach(2)|upper_aerodigestive_tract(8)|urinary_tract(10)	203	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TTCTCATATGAAGCAGTCTAC	0.323000													4	213					0	0	1	0	0
PIWIL4	143689	broad.mit.edu	37	11	94341805	94341805	+	Silent	SNP	C	C	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr11:94341805C>T	uc001pfa.3	+	14	2107	c.1896C>T	c.(1894-1896)gaC>gaT	p.D632D	PIWIL4_uc010rue.1_Intron|PIWIL4_uc009ywk.2_Non-coding_Transcript	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	Homo sapiens piwi-like 4 (Drosophila) (PIWIL4), mRNA.	632	Piwi.				DNA methylation involved in gamete generation|cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			breast(1)|central_nervous_system(2)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(9)|lung(10)|prostate(1)|skin(1)|urinary_tract(2)	30		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				TCAGCAAGGACGTGATGGTTG	0.393000													55	83					0	0	1	0	0
EXOSC9	5393	broad.mit.edu	37	4	122722615	122722615	+	Silent	SNP	C	C	T	rs150604288		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr4:122722615C>T	uc003iea.3	+	0	144	c.36C>T	c.(34-36)cgC>cgT	p.R12R	EXOSC9_uc003idz.3_Silent_p.R12R|EXOSC9_uc003ieb.3_5'Flank	NM_005033	NP_005024	Q06265	EXOS9_HUMAN	Homo sapiens exosome component 9 (EXOSC9), transcript variant 2, mRNA.	12	ARE binding.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|immune response|nuclear mRNA surveillance|nuclear polyadenylation-dependent rRNA catabolic process|positive regulation of cell growth|rRNA processing	cytosol|nuclear exosome (RNase complex)|nucleolus|nucleus	3'-5'-exoribonuclease activity|AU-rich element binding|protein binding			cervix(1)|endometrium(2)|kidney(2)|large_intestine(6)|lung(4)|urinary_tract(1)	16						GCGAACGCCGCTTCCTACTCC	0.582000													41	48					0	0	1	0	0
FOXJ3	22887	broad.mit.edu	37	1	42744042	42744042	+	Nonsense_Mutation	SNP	T	T	A			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr1:42744042T>A	uc001che.3	-	4	658	c.346A>T	c.(346-348)Aga>Tga	p.R116*	FOXJ3_uc001chf.3_Nonsense_Mutation_p.R116*|FOXJ3_uc001chh.2_Nonsense_Mutation_p.R116*|FOXJ3_uc001chg.3_Nonsense_Mutation_p.R116*	NM_001198851	NP_001185780	Q9UPW0	FOXJ3_HUMAN	Homo sapiens forkhead box J3 (FOXJ3), transcript variant 3, mRNA.	116					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			NS(1)|endometrium(3)|kidney(2)|large_intestine(4)|lung(3)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	18	Ovarian(52;0.01)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CCAGCCTCTCTATAATATGGG	0.313000													33	53					0	0	1	0	0
NAT1	9	broad.mit.edu	37	8	18080420	18080420	+	Silent	SNP	T	T	C			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr8:18080420T>C	uc010ltd.3	+	4	1231	c.864T>C	c.(862-864)ttT>ttC	p.F288F	NAT1_uc003wyt.3_Silent_p.F350F|NAT1_uc003wyu.3_Silent_p.F288F|NAT1_uc003wyv.3_Silent_p.F288F|NAT1_uc010ltc.3_Silent_p.F288F|NAT1_uc003wys.3_Silent_p.F350F|NAT1_uc003wyr.3_Silent_p.F288F|NAT1_uc003wyq.3_Silent_p.F288F|NAT1_uc011kyl.2_Silent_p.F288F	NM_001160179	NP_001153651	P18440	ARY1_HUMAN	Homo sapiens N-acetyltransferase 1 (arylamine N-acetyltransferase) (NAT1), transcript variant 9, mRNA.	288					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity			NS(1)|breast(1)|endometrium(3)|kidney(1)|lung(2)|urinary_tract(1)	9				Colorectal(111;0.0519)|COAD - Colon adenocarcinoma(73;0.208)		ATAGATTTTTTACTATTTAGA	0.343000													71	107					0	0	1	0	0
DCBLD2	131566	broad.mit.edu	37	3	98600601	98600601	+	Silent	SNP	A	A	G			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr3:98600601A>G	uc003dte.3	-	1	579	c.216T>C	c.(214-216)tgT>tgC	p.C72C	DCBLD2_uc003dtd.3_Silent_p.C72C|DCBLD2_uc003dtf.1_Non-coding_Transcript	NM_080927	NP_563615	Q96PD2	DCBD2_HUMAN	Homo sapiens discoidin, CUB and LCCL domain containing 2 (DCBLD2), mRNA.	72	CUB.				cell adhesion|intracellular receptor mediated signaling pathway|negative regulation of cell growth|wound healing	cell surface|integral to plasma membrane				breast(1)|central_nervous_system(1)|endometrium(7)|kidney(1)|large_intestine(3)|lung(7)|ovary(2)|prostate(1)|stomach(2)	25						CAGTGTGTCCACATCCATCAC	0.363000													47	82					0	0	1	0	0
SLC3A1	6519	broad.mit.edu	37	2	44539791	44539791	+	Missense_Mutation	SNP	A	A	G			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr2:44539791A>G	uc002ruc.4	+	7	1477	c.1399A>G	c.(1399-1401)Atg>Gtg	p.M467V	SLC3A1_uc002rtz.2_Missense_Mutation_p.M467V|SLC3A1_uc002rua.3_Missense_Mutation_p.M467V|SLC3A1_uc002rub.2_Missense_Mutation_p.M467V|SLC3A1_uc002rud.4_Missense_Mutation_p.M189V|SLC3A1_uc002rue.4_Missense_Mutation_p.M87V	NM_000341	NP_000332	Q07837	SLC31_HUMAN	Homo sapiens solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1 (SLC3A1), mRNA.	467			M -> K (in CSNU1).|M -> T (in CSNU1; loss of 80% of amino acid transport activity).		carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	L-cystine transmembrane transporter activity|basic amino acid transmembrane transporter activity|catalytic activity|cation binding			breast(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(5)|lung(11)|prostate(1)|skin(3)	26		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	CGTGATGAACATGCTTCTTTT	0.408000													38	67					0	0	1	0	0
ACER1	125981	broad.mit.edu	37	19	6307219	6307219	+	Missense_Mutation	SNP	G	G	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr19:6307219G>T	uc002mel.2	-	4	649	c.571C>A	c.(571-573)Cgt>Agt	p.R191S		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	Homo sapiens alkaline ceramidase 1 (ACER1), mRNA.	191						endoplasmic reticulum membrane|integral to membrane	ceramidase activity			NS(2)|cervix(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(5)|lung(4)|pancreas(1)	15						CAAAGCAGACGGTCACTGATC	0.542000													8	22					5.68852e-11	6.58671e-11	1	1	0
ACER1	125981	broad.mit.edu	37	19	6307218	6307218	+	Missense_Mutation	SNP	C	C	T	rs151165925		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr19:6307218C>T	uc002mel.2	-	4	650	c.572G>A	c.(571-573)cGt>cAt	p.R191H		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	Homo sapiens alkaline ceramidase 1 (ACER1), mRNA.	191						endoplasmic reticulum membrane|integral to membrane	ceramidase activity			NS(2)|cervix(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(5)|lung(4)|pancreas(1)	15						GCAAAGCAGACGGTCACTGAT	0.542000													7	22					0	0	1	0	0
CENPF	1063	broad.mit.edu	37	1	214815619	214815619	+	Missense_Mutation	SNP	A	A	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr1:214815619A>T	uc001hkm.3	+	11	4112	c.3938A>T	c.(3937-3939)gAa>gTa	p.E1313V		NM_016343	NP_057427	P49454	CENPF_HUMAN	Homo sapiens centromere protein F, 350/400kDa (mitosin) (CENPF), mRNA.	1417					DNA replication|G2 phase of mitotic cell cycle|cell differentiation|cell division|cell proliferation|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			NS(2)|breast(2)|central_nervous_system(4)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(37)|lung(47)|ovary(7)|prostate(3)|skin(6)|stomach(1)|urinary_tract(1)	126				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		CTGCAGGCTGAAAAGTATGAA	0.393000													78	81					0	0	1	0	0
KIAA0195	9772	broad.mit.edu	37	17	73487468	73487468	+	Nonsense_Mutation	SNP	G	G	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr17:73487468G>T	uc010wsa.2	+	11	1540	c.1348G>T	c.(1348-1350)Gag>Tag	p.E450*	KIAA0195_uc002jnz.4_Nonsense_Mutation_p.E440*|KIAA0195_uc010wsb.2_Nonsense_Mutation_p.E92*	NM_014738	NP_055553	Q12767	K0195_HUMAN	Homo sapiens KIAA0195 (KIAA0195), mRNA.	440					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			breast(2)|endometrium(5)|kidney(2)|large_intestine(7)|lung(17)|ovary(5)|skin(2)|stomach(1)|urinary_tract(1)	42	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CGGGAAGGTGGAGCCCCCTCA	0.602000													18	39					7.45023e-12	8.94027e-12	1	1	0
ABCC1	4363	broad.mit.edu	37	16	16180696	16180696	+	Missense_Mutation	SNP	G	G	A			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr16:16180696G>A	uc010bvi.3	+	17	2483	c.2308G>A	c.(2308-2310)Ggg>Agg	p.G770R	ABCC1_uc010bvj.3_Missense_Mutation_p.G711R|ABCC1_uc010bvk.3_Intron|ABCC1_uc010bvl.3_Missense_Mutation_p.G770R|ABCC1_uc010bvm.3_Intron|ABCC1_uc002del.4_Missense_Mutation_p.G654R	NM_004996	NP_004987	P33527	MRP1_HUMAN	Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 1 (ABCC1), transcript variant 1, mRNA.	770	ABC transporter 1.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(3)|endometrium(9)|kidney(3)|large_intestine(12)|lung(20)|ovary(5)|prostate(1)|skin(3)	56					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	GAACCTGTCTGGGGGCCAGAA	0.587000													4	25					0	0	1	0	0
IVL	3713	broad.mit.edu	37	1	152882868	152882868	+	Missense_Mutation	SNP	C	C	G			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr1:152882868C>G	uc021ozl.1	+	0	595	c.595C>G	c.(595-597)Cag>Gag	p.Q199E	IVL_uc001fau.3_Missense_Mutation_p.Q199E	NM_005547	NP_005538	P07476	INVO_HUMAN	Homo sapiens involucrin (IVL), mRNA.	199	39 X 10 AA approximate tandem repeats of [LP]-[EKG]-[LHVYQEK]-[PLSQE]-[EQDV]- [QHEKRGA]-Q-[EMVQLP]-[GKLE]-[QHVNLD].				isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			breast(1)|endometrium(6)|kidney(1)|large_intestine(5)|lung(11)|ovary(3)|skin(1)|upper_aerodigestive_tract(1)	29	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			cccagagcagcaggaggggca	0.692000													5	58					0	0	1	0	0
COG4	25839	broad.mit.edu	37	16	70548271	70548271	+	Missense_Mutation	SNP	A	A	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr16:70548271A>T	uc002ezc.3	-	3	522	c.511T>A	c.(511-513)Tcg>Acg	p.S171T	COG4_uc002ezd.3_Missense_Mutation_p.S171T|COG4_uc010cfu.3_Non-coding_Transcript|COG4_uc002eze.3_5'UTR	NM_015386	NP_056201	Q9H9E3	COG4_HUMAN	Homo sapiens component of oligomeric golgi complex 4 (COG4), transcript variant 1, mRNA.	167					Golgi organization|Golgi vesicle prefusion complex stabilization|protein transport|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding			breast(3)|endometrium(2)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(8)|lung(12)|pancreas(1)|prostate(2)	33		Ovarian(137;0.0694)				tcaatgaccgACTTGTCCAGG	0.468000													12	24					0	0	1	0	0
METAP2	10988	broad.mit.edu	37	12	95867964	95867964	+	Silent	SNP	T	T	G			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr12:95867964T>G	uc001tec.3	+	0	143	c.9T>G	c.(7-9)ggT>ggG	p.G3G	METAP2_uc010suv.2_Silent_p.G3G|METAP2_uc001tef.3_Silent_p.G3G|METAP2_uc001tee.3_Non-coding_Transcript	NM_006838	NP_006829	P50579	AMPM2_HUMAN	Homo sapiens methionyl aminopeptidase 2 (METAP2), mRNA.	3					N-terminal protein amino acid modification|peptidyl-methionine modification|protein processing|proteolysis	cytoplasm	aminopeptidase activity|metal ion binding|metalloexopeptidase activity			endometrium(3)|large_intestine(2)|lung(7)|prostate(1)	13					L-Methionine(DB00134)	ACATGGCGGGTGTGGAGGAGG	0.652000													8	98					0	0	1	0	0
FAM186A	121006	broad.mit.edu	37	12	50746116	50746116	+	Missense_Mutation	SNP	G	G	A			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr12:50746116G>A	uc001rwl.2	-	3	4637	c.4499C>T	c.(4498-4500)gCc>gTc	p.A1500V	FAM186A_uc010smt.1_Missense_Mutation_p.A1278V	NM_001145475	NP_001138947	A6NE01	F186A_HUMAN	Homo sapiens family with sequence similarity 186, member A (FAM186A), mRNA.	1500								p.A1500V(3)									CAGGGCCTGGGCCTGCTGAGG	0.662000													6	131					0	0	1	0	0
CIC	23152	broad.mit.edu	37	19	42795850	42795850	+	Missense_Mutation	SNP	C	C	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr19:42795850C>T	uc002otf.1	+	10	2879	c.2839C>T	c.(2839-2841)Ccg>Tcg	p.P947S		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	Homo sapiens capicua homolog (Drosophila) (CIC), mRNA.	947	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			autonomic_ganglia(1)|breast(5)|central_nervous_system(32)|endometrium(10)|kidney(2)|large_intestine(7)|lung(9)|ovary(7)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	82		Prostate(69;0.00682)				ACTGGTGAGCCCGCCCTTCTC	0.662000			"""Mis, F, S"""		oligodendroglioma								21	41					0	0	1	0	0
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr12:53298675A>C	uc009zmk.1	-	1	195	c.175T>G	c.(175-177)Tcc>Gcc	p.S59A	KRT8_uc001sbd.2_Missense_Mutation_p.S31A|KRT8_uc009zml.1_Missense_Mutation_p.S31A|KRT8_uc009zmm.1_Missense_Mutation_p.S31A	NM_002273	NP_002264	P05787	K2C8_HUMAN	Homo sapiens keratin 8 (KRT8), transcript variant 2, mRNA.	31	Head.				cytoskeleton organization|interspecies interaction between organisms	cytoplasm|keratin filament|nuclear matrix|nucleoplasm	protein binding|structural molecule activity	p.S31A(4)		endometrium(5)|large_intestine(1)|liver(1)|lung(3)|ovary(1)|prostate(1)|skin(1)	13				BRCA - Breast invasive adenocarcinoma(357;0.108)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTGATGCGGGAACCGGGCCCA	0.662000													3	71					0	0	1	0	0
KIAA0100	9703	broad.mit.edu	37	17	26943696	26943696	+	Missense_Mutation	SNP	G	G	C			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr17:26943696G>C	uc002hbu.3	-	34	6200	c.6097C>G	c.(6097-6099)Cga>Gga	p.R2033G	SPAG5_uc010waq.1_5'Flank|SPAG5-AS1_uc021tts.1_Non-coding_Transcript|SPAG5_uc010war.1_5'Flank|SPAG5_uc010crq.2_5'Flank|SPAG5_uc021ttt.1_5'Flank	NM_014680	NP_055495	Q14667	K0100_HUMAN	Homo sapiens KIAA0100 (KIAA0100), mRNA.	2033						extracellular region				breast(3)|cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(13)|lung(23)|ovary(2)|prostate(2)|skin(6)|stomach(2)|urinary_tract(3)	68	Lung NSC(42;0.00431)					TCCACACTTCGGCCAGGAAAG	0.448000													73	43					0	0	1	0	0
TMEM145	284339	broad.mit.edu	37	19	42819592	42819592	+	Splice_Site	SNP	G	G	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr19:42819592G>T	uc002otk.1	+	8	698	c.646_splice	c.e8+1	p.V216_splice		NM_173633	NP_775904	Q8NBT3	TM145_HUMAN	Homo sapiens transmembrane protein 145 (TMEM145), mRNA.	216						integral to membrane				breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(2)|lung(11)|prostate(4)|skin(1)|urinary_tract(1)	27		Prostate(69;0.00682)				Aggagtagagggtgaggttcc	0.537000													3	48					0.115264	0.117037	1	1	0
CAPN12	147968	broad.mit.edu	37	19	39226808	39226808	+	Missense_Mutation	SNP	C	C	T			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr19:39226808C>T	uc002ojd.1	-	11	1834	c.1525G>A	c.(1525-1527)Gcc>Acc	p.A509T	CAPN12_uc010egd.1_5'Flank|CAPN12_uc002ojc.1_5'Flank	NM_144691	NP_653292	Q6ZSI9	CAN12_HUMAN	Homo sapiens calpain 12 (CAPN12), mRNA.	509	Domain III.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(2)|lung(6)|ovary(1)|pancreas(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	20	all_cancers(60;2.87e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			TCGTCGCCGGCGTGGGCGGTG	0.731000													5	6					0	0	1	0	0
PAQR7	164091	broad.mit.edu	37	1	26189753	26189755	+	In_Frame_Del	DEL	TTG	TTG	-			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr1:26189753_26189755delTTG	uc021ojm.1	-	0	576_578	c.576_578delCAA	c.(574-579)aacaag>aag	p.N192del	PAQR7_uc001bkx.3_In_Frame_Del_p.N192del	NM_178422	NP_848509	Q86WK9	MPRA_HUMAN	Homo sapiens progestin and adipoQ receptor family member VII (PAQR7), mRNA.	192					cell differentiation|multicellular organismal development|oogenesis	integral to membrane|plasma membrane	receptor activity|steroid binding			breast(3)|endometrium(1)|large_intestine(2)|lung(2)|upper_aerodigestive_tract(1)	9		Colorectal(325;3.46e-05)|Lung NSC(340;0.00038)|all_lung(284;0.00051)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.16e-25)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000724)|BRCA - Breast invasive adenocarcinoma(304;0.000965)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0136)|READ - Rectum adenocarcinoma(331;0.0649)		CTGGATGTACTTGTTATAGCAGG	0.581													44	62	---	---	---	---					
AHDC1	27245	broad.mit.edu	37	1	27876672	27876673	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr1:27876672_27876673delGT	uc021ojw.1	-	0	1954_1955	c.1954_1955delAC	c.(1954-1956)accfs	p.T652fs	AHDC1_uc009vsy.3_Frame_Shift_Del_p.T652fs|AHDC1_uc009vsz.1_Frame_Shift_Del_p.T652fs	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	Homo sapiens AT hook, DNA binding motif, containing 1 (AHDC1), mRNA.	652							DNA binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(2)|kidney(3)|large_intestine(8)|lung(20)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)	42		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		GATGCTCTGGGTGTCGGGGGCC	0.703													16	25	---	---	---	---					
AP1S1	1174	broad.mit.edu	37	7	100802404	100802405	+	Frame_Shift_Ins	INS	-	-	G			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr7:100802404_100802405insG	uc003uxv.4	+	3	466_467	c.356_357insG	c.(355-357)atgfs	p.M119fs	MIR4653_uc022aiy.1_5'Flank	NM_001283	NP_001274	P61966	AP1S1_HUMAN	Homo sapiens adaptor-related protein complex 1, sigma 1 subunit (AP1S1), mRNA.	119					intracellular protein transport|post-Golgi vesicle-mediated transport|receptor-mediated endocytosis|regulation of defense response to virus by virus|response to virus|viral reproduction	AP-1 adaptor complex|coated pit|cytosol|lysosomal membrane	protein binding|protein transporter activity			breast(1)|endometrium(3)|kidney(1)|large_intestine(1)|lung(2)	8	Lung NSC(181;0.168)|all_lung(186;0.215)					GAGTTTTTGATGGGGGGGGATG	0.564													7	102	---	---	---	---					
MLL3	58508	broad.mit.edu	37	7	151874152	151874158	+	Frame_Shift_Del	DEL	TTTTTGG	TTTTTGG	-	rs79763944		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr7:151874152_151874158delTTTTTGG	uc003wla.3	-	37	8599_8605	c.8380_8386delCCAAAAA	c.(8380-8388)ccaaaaaaafs	p.P2794fs	MLL3_uc003wkz.3_Frame_Shift_Del_p.P1855fs|MLL3_uc003wky.3_Frame_Shift_Del_p.P303fs	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	Homo sapiens myeloid/lymphoid or mixed-lineage leukemia 3 (MLL3), mRNA.	2794					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			NS(6)|biliary_tract(9)|breast(24)|central_nervous_system(18)|cervix(6)|endometrium(31)|haematopoietic_and_lymphoid_tissue(1)|kidney(26)|large_intestine(52)|liver(1)|lung(102)|ovary(10)|pancreas(17)|prostate(15)|skin(20)|soft_tissue(1)|stomach(3)|upper_aerodigestive_tract(8)|urinary_tract(15)	365	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TGTTCCTTTTTTTTTGGTTCAACAGAT	0.357			N		medulloblastoma								30	65	---	---	---	---					
KRTAP5-10	387273	broad.mit.edu	37	11	71276657	71276658	+	In_Frame_Ins	INS	-	-	GGCTGTGGCTCCGGCTGTGGG	rs71049990		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr11:71276657_71276658insGGCTGTGGCTCCGGCTGTGGG	uc001oqt.1	+	0	49_50	c.24_25insGGCTGTGGCTCCGGCTGTGGG	c.(22-27)insGGCTGTGGCTCCGGCTGTGGG	p.29_30insGCGSGCG		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	Homo sapiens keratin associated protein 5-10 (KRTAP5-10), mRNA.	29						keratin filament				endometrium(2)|large_intestine(1)|lung(4)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	12						GCTGCTCCGGAGGCTGTGGCTC	0.668													39	113	---	---	---	---					
PRB1	5542	broad.mit.edu	37	12	11506632	11506633	+	In_Frame_Ins	INS	-	-	GGA			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr12:11506632_11506633insGGA	uc001qzw.1	-	2	441_442	c.404_405insTCC	c.(403-405)cca>ccTCCa	p.135_135P>PP	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	Homo sapiens proline-rich protein BstNI subfamily 1 (PRB1), transcript variant 1, mRNA.	135	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in allele M).|Missing (in allele S).|Missing (in clone CP-4).|Missing (in clone CP-5).			extracellular region				NS(1)|central_nervous_system(1)|kidney(4)|large_intestine(1)|lung(9)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	20			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GTGGCTTTCCTGGAGGTGGGGG	0.604													7	63	---	---	---	---					
PRB1	5542	broad.mit.edu	37	12	11506653	11506653	+	Frame_Shift_Del	DEL	T	T	-			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr12:11506653delT	uc001qzw.1	-	2	421	c.384delA	c.(382-384)agafs	p.R128fs	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	Homo sapiens proline-rich protein BstNI subfamily 1 (PRB1), transcript variant 1, mRNA.	128	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in allele M).|Missing (in clone CP-4).|Missing (in clone CP-5).	K -> R (in Ref. 5; CAA30395).		extracellular region				NS(1)|central_nervous_system(1)|kidney(4)|large_intestine(1)|lung(9)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	20			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GACCTTGAGGTCTGTTGCCTC	0.602													7	79	---	---	---	---					
PRB1	5542	broad.mit.edu	37	12	11506655	11506656	+	Frame_Shift_Ins	INS	-	-	G			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr12:11506655_11506656insG	uc001qzw.1	-	2	418_419	c.381_382insC	c.(379-384)aacagafs	p.N127fs	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	Homo sapiens proline-rich protein BstNI subfamily 1 (PRB1), transcript variant 1, mRNA.	127	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in allele M).|Missing (in clone CP-4).|Missing (in clone CP-5).			extracellular region				NS(1)|central_nervous_system(1)|kidney(4)|large_intestine(1)|lung(9)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	20			OV - Ovarian serous cystadenocarcinoma(49;0.185)			CCTTGAGGTCTGTTGCCTCCTT	0.604													7	79	---	---	---	---					
ZNF529	57711	broad.mit.edu	37	19	37038841	37038841	+	Frame_Shift_Del	DEL	T	T	-			TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	g.chr19:37038841delT	uc002oeh.4	-	4	821	c.619delA	c.(619-621)accfs	p.T207fs	ZNF529_uc010xth.2_Frame_Shift_Del_p.T207fs|ZNF529_uc010xti.2_Frame_Shift_Del_p.T189fs|ZNF529_uc002oeg.4_Frame_Shift_Del_p.T102fs	NM_020951	NP_001139122	Q6P280	ZN529_HUMAN	Homo sapiens zinc finger protein 529 (ZNF529), transcript variant 2, mRNA.	174					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1	Esophageal squamous(110;0.198)					ATCCCAAAGGTTTTCCAACAT	0.313													15	32	---	---	---	---					
