Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MTMR3	8897	broad.mit.edu	37	22	30416249	30416249	+	Silent	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr22:30416249C>T	uc003agv.4	+	16	2929	c.2601C>T	c.(2599-2601)tgC>tgT	p.C867C	MTMR3_uc003agu.4_Silent_p.C867C|MTMR3_uc003agw.4_Silent_p.C867C	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	Homo sapiens myotubularin related protein 3 (MTMR3), transcript variant 3, mRNA.	867					phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|large_intestine(3)|ovary(2)|skin(8)|upper_aerodigestive_tract(1)	17			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			ATAGATCTTGCCTTGTAAATA	0.512000													50	71					0	0	1	0	0
PRRC2A	7916	broad.mit.edu	37	6	31593324	31593324	+	Missense_Mutation	SNP	G	G	A	rs116604773	by1000genomes	TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr6:31593324G>A	uc003nvb.4	+	6	944	c.695G>A	c.(694-696)cGg>cAg	p.R232Q	PRRC2A_uc011dnv.1_Non-coding_Transcript|PRRC2A_uc003nvc.4_Missense_Mutation_p.R232Q|PRRC2A_uc003nve.3_3'UTR	NM_080686	NP_542417	P48634	PRC2A_HUMAN	Homo sapiens proline-rich coiled-coil 2A (PRRC2A), transcript variant 1, mRNA.	232	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding			breast(6)|central_nervous_system(1)|endometrium(7)|kidney(5)|large_intestine(14)|lung(19)|ovary(3)|pancreas(2)|prostate(4)|skin(5)|soft_tissue(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	70						CATGATCCCCGGGGTGGGCTA	0.567000													3	83					0	0	1	0	0
TRIM8	81603	broad.mit.edu	37	10	104416093	104416093	+	Missense_Mutation	SNP	C	C	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr10:104416093C>A	uc001kvz.2	+	4	1122	c.999C>A	c.(997-999)ttC>ttA	p.F333L		NM_030912	NP_112174	Q9BZR9	TRIM8_HUMAN	Homo sapiens tripartite motif containing 8 (TRIM8), mRNA.	333						PML body|cytoplasm	ligase activity|protein homodimerization activity|zinc ion binding			endometrium(4)|kidney(1)|large_intestine(2)|lung(5)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)	15		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		CCAAGCTCTTCCTGAACGAAG	0.607000													64	81					8.6982e-55	9.5468e-55	1	1	0
ZNF57	126295	broad.mit.edu	37	19	2915555	2915555	+	Silent	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr19:2915555C>T	uc002lwr.3	+	1	187	c.39C>T	c.(37-39)ttC>ttT	p.F13F	ZNF57_uc010xha.2_5'UTR	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	Homo sapiens zinc finger protein 57 (ZNF57), mRNA.	13	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(1)|kidney(2)|large_intestine(5)|lung(2)|ovary(1)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	18				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGTGGACTTCACCCTGGAGG	0.542000													56	70					0	0	1	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106109170	106109170	+	Missense_Mutation	SNP	G	G	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chrX:106109170G>A	uc004emo.3	+	15	2734	c.2569G>A	c.(2569-2571)Gca>Aca	p.A857T	MORC4_uc004emp.4_Intron	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	Homo sapiens TBC1 domain family, member 8B (with GRAM domain) (TBC1D8B), transcript variant 1, mRNA.	857						intracellular	Rab GTPase activator activity|calcium ion binding			NS(2)|breast(4)|central_nervous_system(1)|endometrium(3)|kidney(5)|large_intestine(6)|liver(4)|lung(15)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	47						GGCTCATTCTGCAAATAAAGA	0.408000													3	39					0	0	1	0	0
HIP1	3092	broad.mit.edu	37	7	75183809	75183809	+	Silent	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr7:75183809C>T	uc003uds.2	-	19	2025	c.1980G>A	c.(1978-1980)acG>acA	p.T660T	HIP1_uc011kfz.2_Silent_p.T660T	NM_005338	NP_005329	O00291	HIP1_HUMAN	Homo sapiens huntingtin interacting protein 1 (HIP1), transcript variant 1, mRNA.	660					activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|clathrin coated vesicle membrane|cytoskeleton|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			breast(3)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(10)|lung(25)|ovary(2)|pancreas(2)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	51						TGGATGTGACCGTGGAGAGGA	0.527000			T	PDGFRB	CMML								51	33					0	0	1	0	0
CREBBP	1387	broad.mit.edu	37	16	3901001	3901001	+	Missense_Mutation	SNP	G	G	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr16:3901001G>A	uc002cvv.3	-	1	299	c.95C>T	c.(94-96)tCa>tTa	p.S32L	CREBBP_uc002cvw.3_Missense_Mutation_p.S32L	NM_004380	NP_004371	Q92793	CBP_HUMAN	Homo sapiens CREB binding protein (CREBBP), transcript variant 1, mRNA.	32					N-terminal peptidyl-lysine acetylation|cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	MyoD binding|histone acetyltransferase activity|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			NS(1)|breast(5)|central_nervous_system(4)|cervix(3)|endometrium(12)|haematopoietic_and_lymphoid_tissue(125)|kidney(5)|large_intestine(32)|lung(43)|ovary(18)|pancreas(2)|prostate(6)|skin(9)|soft_tissue(1)|stomach(3)|upper_aerodigestive_tract(5)|urinary_tract(21)	295		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GTCAAACAATGATCCAAAATC	0.403000			"""T, N, F, Mis, O"""	"""MLL, MORF, RUNXBP2"""	"""ALL, AML, DLBCL, B-NHL """		Rubinstein-Taybi syndrome						18	46					0	0	1	0	0
LLGL2	3993	broad.mit.edu	37	17	73565071	73565071	+	Silent	SNP	C	C	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr17:73565071C>A	uc002joh.3	+	12	1489	c.1335C>A	c.(1333-1335)ggC>ggA	p.G445G	LLGL2_uc002joi.3_Silent_p.G445G|LLGL2_uc010dgg.2_Silent_p.G445G|LLGL2_uc002joj.3_Silent_p.G434G|LLGL2_uc010wsd.2_Silent_p.G72G	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	Homo sapiens lethal giant larvae homolog 2 (Drosophila) (LLGL2), transcript variant 3, mRNA.	445					cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			NS(1)|breast(3)|cervix(2)|endometrium(2)|kidney(1)|large_intestine(2)|lung(9)|ovary(2)|pancreas(1)|prostate(1)|skin(5)|upper_aerodigestive_tract(1)|urinary_tract(1)	31	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			ACGAGGACGGCACGGTGCGGT	0.667000													5	28					1	1	1	1	0
SCYL2	55681	broad.mit.edu	37	12	100707272	100707272	+	Missense_Mutation	SNP	A	A	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr12:100707272A>T	uc001thn.3	+	6	975	c.925A>T	c.(925-927)Aat>Tat	p.N309Y	SCYL2_uc009ztw.1_Missense_Mutation_p.N136Y|SCYL2_uc001thm.1_Missense_Mutation_p.N309Y	NM_017988	NP_060458	Q6P3W7	SCYL2_HUMAN	Homo sapiens SCY1-like 2 (S. cerevisiae) (SCYL2), mRNA.	309	Protein kinase.				endosome to lysosome transport|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of clathrin-mediated endocytosis|positive regulation of receptor internalization	Golgi apparatus|clathrin-coated vesicle|endosome membrane|perinuclear region of cytoplasm	ATP binding|protein kinase activity|receptor binding			central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(12)|large_intestine(4)|lung(15)|ovary(2)|skin(1)	41						GCTACTGTTAAATGTAACTCC	0.363000													17	50					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52359698	52359698	+	Missense_Mutation	SNP	T	T	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr8:52359698T>A	uc003xqu.4	-	11	1492	c.1391A>T	c.(1390-1392)cAg>cTg	p.Q464L		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	Homo sapiens peroxidasin homolog (Drosophila)-like (PXDNL), mRNA.	464	Ig-like C2-type 3.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			NS(1)|breast(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(6)|lung(25)|ovary(1)|pancreas(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(2)	48		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				AACTGTATGCTGGCCTTCCAC	0.512000													35	50					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151155196	151155196	+	Missense_Mutation	SNP	T	T	G			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr3:151155196T>G	uc011bod.2	-	5	7153	c.7153A>C	c.(7153-7155)Agt>Cgt	p.S2385R	IGSF10_uc011bob.2_Missense_Mutation_p.S412R|IGSF10_uc011boc.2_Missense_Mutation_p.S364R	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	Homo sapiens immunoglobulin superfamily, member 10 (IGSF10), transcript variant 1, mRNA.	2385	Ig-like C2-type 10.				cell differentiation|multicellular organismal development|ossification	extracellular region				NS(1)|breast(1)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(7)|large_intestine(24)|liver(4)|lung(43)|ovary(8)|prostate(4)|skin(9)|stomach(1)|urinary_tract(3)	116			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TACTGATAACTTTGTGGTCCA	0.408000													30	30					0	0	1	0	0
SLC26A2	1836	broad.mit.edu	37	5	149361289	149361289	+	Silent	SNP	T	T	C			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr5:149361289T>C	uc003lrh.3	+	2	2401	c.2133T>C	c.(2131-2133)agT>agC	p.S711S		NM_000112	NP_000103	P50443	S26A2_HUMAN	Homo sapiens solute carrier family 26 (sulfate transporter), member 2 (SLC26A2), mRNA.	711	STAS.					integral to plasma membrane|membrane fraction	secondary active sulfate transmembrane transporter activity			NS(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(9)|lung(1)|prostate(2)|stomach(1)	18			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TCTTCTATAGTGTGTATGAAG	0.413000													13	19					0	0	1	0	0
OLFM4	10562	broad.mit.edu	37	13	53624827	53624827	+	Missense_Mutation	SNP	C	C	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr13:53624827C>A	uc001vhl.3	+	4	1550	c.1454C>A	c.(1453-1455)cCt>cAt	p.P485H	OLFM4_uc001vhk.2_3'UTR	NM_006418	NP_006409	Q6UX06	OLFM4_HUMAN	Homo sapiens olfactomedin 4 (OLFM4), mRNA.	485	Olfactomedin-like.				cell adhesion	extracellular space				breast(2)|endometrium(4)|kidney(4)|large_intestine(5)|lung(20)|skin(3)|urinary_tract(1)	39		Breast(56;0.000776)|Lung NSC(96;0.000814)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.13e-08)		AACTATAACCCTTTTGACCAG	0.378000													30	27					4.0492e-12	4.18883e-12	1	1	0
PAXIP1	22976	broad.mit.edu	37	7	154767474	154767474	+	Missense_Mutation	SNP	G	G	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr7:154767474G>A	uc022aqg.1	-	5	1049	c.1006C>T	c.(1006-1008)Cgg>Tgg	p.R336W	PAXIP1_uc022aqf.1_Missense_Mutation_p.R336W|PAXIP1_uc022aqh.1_Missense_Mutation_p.R302W|PAXIP1_uc022aqi.1_Missense_Mutation_p.R300W|PAXIP1_uc003wlr.1_Missense_Mutation_p.R245W	NM_007349	NP_031375	Q6ZW49	PAXI1_HUMAN	Homo sapiens PAX interacting (with transcription-activation domain) protein 1 (PAXIP1), mRNA.	336					DNA damage response, signal transduction by p53 class mediator|DNA recombination|DNA repair|histone H3-K4 methylation|positive regulation of histone H3-K36 methylation|positive regulation of histone H3-K4 methylation|positive regulation of histone acetylation|positive regulation of isotype switching|positive regulation of protein ubiquitination|positive regulation of transcription initiation from RNA polymerase II promoter|response to ionizing radiation|transcription, DNA-dependent	histone methyltransferase complex|nuclear matrix				NS(1)|breast(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(7)|lung(9)|ovary(1)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|urinary_tract(1)	33	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0296)	UCEC - Uterine corpus endometrioid carcinoma (81;0.178)		CTCAGTGTCCGTACAGCTGGA	0.433000													62	86					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1093344	1093344	+	Silent	SNP	G	G	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr11:1093344G>T	uc001lsx.1	+	30	5190	c.5163G>T	c.(5161-5163)ccG>ccT	p.P1721P		NM_002457	NP_002448	Q02817	MUC2_HUMAN	Homo sapiens mucin 2, oligomeric mucus/gel-forming (MUC2), mRNA.	1780	Approximate repeats.					inner mucus layer|outer mucus layer	protein binding	p.P1688P(1)|p.P1721P(1)		NS(3)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(26)|haematopoietic_and_lymphoid_tissue(4)|kidney(11)|large_intestine(5)|lung(22)|ovary(2)|prostate(16)|skin(5)|stomach(1)|upper_aerodigestive_tract(2)	102		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	ccccaaccccgacacccatct	0.642000													6	83					1.58986e-06	1.60773e-06	1	1	0
NUSAP1	51203	broad.mit.edu	37	15	41669495	41669495	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr15:41669495C>T	uc001zns.4	+	9	1489	c.1225C>T	c.(1225-1227)Cag>Tag	p.Q409*	NUSAP1_uc001znr.4_Nonsense_Mutation_p.Q408*|NUSAP1_uc001znt.4_Nonsense_Mutation_p.Q394*|NUSAP1_uc001znv.4_Nonsense_Mutation_p.Q407*|NUSAP1_uc010ucw.2_Nonsense_Mutation_p.Q346*|NUSAP1_uc010bce.3_Nonsense_Mutation_p.Q370*|NUSAP1_uc001znu.4_Nonsense_Mutation_p.Q408*|NUSAP1_uc001znw.4_Nonsense_Mutation_p.Q213*	NM_016359	NP_057443	Q9BXS6	NUSAP_HUMAN	Homo sapiens nucleolar and spindle associated protein 1 (NUSAP1), transcript variant 1, mRNA.	409					cytokinesis after mitosis|establishment of mitotic spindle localization|mitotic chromosome condensation|positive regulation of mitosis	chromosome|cytoplasm|nucleolus	DNA binding			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|lung(3)|ovary(1)|prostate(2)|urinary_tract(2)	13		all_cancers(109;5.07e-19)|all_epithelial(112;2.43e-16)|Lung NSC(122;1.81e-11)|all_lung(180;4.81e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;9.63e-17)|GBM - Glioblastoma multiforme(113;1.59e-06)|BRCA - Breast invasive adenocarcinoma(123;0.168)		ACCCCATCTCCAGACAAAGTA	0.333000													17	29					0	0	1	0	0
TONSL	4796	broad.mit.edu	37	8	145668588	145668588	+	Missense_Mutation	SNP	C	C	G			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr8:145668588C>G	uc011llg.2	-	3	396	c.381G>C	c.(379-381)agG>agC	p.R127S		NM_013432	NP_038460	Q96HA7	TONSL_HUMAN	Homo sapiens tonsoku-like, DNA repair protein (TONSL), mRNA.	127					cytoplasmic sequestering of transcription factor|double-strand break repair via homologous recombination|replication fork processing	cytoplasm|nuclear replication fork	histone binding|transcription corepressor activity			biliary_tract(1)|central_nervous_system(1)|cervix(1)|endometrium(2)|kidney(2)|lung(14)|ovary(3)|prostate(1)|skin(1)	26						GCAAAGCATCCCTCGACTGGC	0.622000													42	93					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8235300	8235300	+	Missense_Mutation	SNP	A	A	G			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr8:8235300A>G	uc003wsh.4	-	1	619	c.619T>C	c.(619-621)Ttc>Ctc	p.F207L		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	Homo sapiens homolog of rat pragma of Rnd2 (SGK223), mRNA.	207							ATP binding|non-membrane spanning protein tyrosine kinase activity										TTCTGGCGGAAGCTCTCCTGG	0.602000													37	40					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195510156	195510156	+	Silent	SNP	G	G	A	rs142096300	by1000genomes	TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr3:195510156G>A	uc021xjp.1	-	1	8451	c.8295C>T	c.(8293-8295)caC>caT	p.H2765H	MUC4_uc003fvo.3_Intron|MUC4_uc003fvp.3_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	Homo sapiens mucin 4, cell surface associated (MUC4), transcript variant 1, mRNA.	502					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity	p.H2765H(1)		NS(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(3)|kidney(1)|large_intestine(5)|lung(23)|ovary(3)|prostate(8)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	51	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GAGGGGTGGCGTGACCTGTGG	0.572000													5	119					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111397929	111397929	+	Missense_Mutation	SNP	G	G	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr4:111397929G>A	uc003iab.4	+	0	701	c.359G>A	c.(358-360)aGc>aAc	p.S120N		NM_001977	NP_001968	Q07075	AMPE_HUMAN	Homo sapiens glutamyl aminopeptidase (aminopeptidase A) (ENPEP), mRNA.	120					cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			breast(1)|endometrium(3)|kidney(1)|large_intestine(12)|lung(22)|ovary(1)|prostate(3)|skin(8)|upper_aerodigestive_tract(2)|urinary_tract(1)	54		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	GGCACCGTGAGCATCTCCATC	0.627000													30	82					0	0	1	0	0
THUMPD3	25917	broad.mit.edu	37	3	9406849	9406849	+	Missense_Mutation	SNP	G	G	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr3:9406849G>A	uc003bro.4	+	1	245	c.97G>A	c.(97-99)Gaa>Aaa	p.E33K	LOC440944_uc003brm.3_Intron|THUMPD3_uc003brn.4_Missense_Mutation_p.E33K	NM_001114092	NP_056268	Q9BV44	THUM3_HUMAN	Homo sapiens THUMP domain containing 3 (THUMPD3), transcript variant 2, mRNA.	33							RNA binding|methyltransferase activity|protein binding			NS(1)|central_nervous_system(1)|large_intestine(4)|lung(9)|ovary(1)|prostate(2)|upper_aerodigestive_tract(1)	19	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.101)		CCTCGGAAGTGAATCTGAGCT	0.443000													40	60					0	0	1	0	0
PIWIL4	143689	broad.mit.edu	37	11	94340737	94340737	+	Missense_Mutation	SNP	A	A	G			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr11:94340737A>G	uc001pfa.3	+	13	1982	c.1771A>G	c.(1771-1773)Atc>Gtc	p.I591V	PIWIL4_uc010rue.1_Non-coding_Transcript|PIWIL4_uc009ywk.2_Non-coding_Transcript	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	Homo sapiens piwi-like 4 (Drosophila) (PIWIL4), mRNA.	591	Piwi.				DNA methylation involved in gamete generation|cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			breast(1)|central_nervous_system(2)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(9)|lung(10)|prostate(1)|skin(1)|urinary_tract(2)	30		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				GATGATGAGTATCGCCACCAA	0.453000													29	40					0	0	1	0	0
SHF	90525	broad.mit.edu	37	15	45491143	45491143	+	Missense_Mutation	SNP	G	G	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr15:45491143G>T	uc001zuy.3	-	1	625	c.130C>A	c.(130-132)Cat>Aat	p.H44N	TRNA_uc021skk.1_5'Flank|TRNA_uc021skl.1_5'Flank	NM_138356	NP_612365	B3KTY1	B3KTY1_HUMAN	Homo sapiens Src homology 2 domain containing F (SHF), mRNA.	44										endometrium(2)|kidney(1)|large_intestine(3)|lung(3)|ovary(1)|prostate(2)	12		all_cancers(109;8.13e-11)|all_epithelial(112;6.29e-09)|Lung NSC(122;3.57e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;4.1e-16)|GBM - Glioblastoma multiforme(94;5.98e-06)		ATCCAGGAATGGGGCTGGGCG	0.632000											OREG0023105	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	53	49					5.10508e-28	5.46973e-28	1	1	0
UTP23	84294	broad.mit.edu	37	8	117782585	117782585	+	Missense_Mutation	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr8:117782585C>T	uc003yoc.3	+	1	444	c.343C>T	c.(343-345)Cat>Tat	p.H115Y		NM_032334	NP_115710	Q9BRU9	UTP23_HUMAN	Homo sapiens UTP23, small subunit (SSU) processome component, homolog (yeast) (UTP23), mRNA.	115					rRNA processing	nucleolus		p.H114Y(1)		breast(2)|endometrium(2)|kidney(1)|large_intestine(2)|lung(4)|urinary_tract(1)	12						AAATCCTCATCATTATTTTGT	0.353000													24	43					0	0	1	0	0
C19orf71	100128569	broad.mit.edu	37	19	3543941	3543941	+	Missense_Mutation	SNP	T	T	C			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr19:3543941T>C	uc010xhm.2	+	3	584	c.563T>C	c.(562-564)gTc>gCc	p.V188A	MFSD12_uc002lxw.3_Intron|MFSD12_uc002lxx.3_Intron	NM_001135580	NP_001129052	A6NCJ1	CS071_HUMAN	Homo sapiens chromosome 19 open reading frame 71 (C19orf71), mRNA.	188										endometrium(2)	2						CGGGAGTGGGTCCTGGAACCA	0.667000													92	168					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10366950	10366950	+	Missense_Mutation	SNP	T	T	G			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr17:10366950T>G	uc002gmn.3	-	7	770	c.659A>C	c.(658-660)gAa>gCa	p.E220A	AK097500_uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	Homo sapiens myosin, heavy chain 4, skeletal muscle (MYH4), mRNA.	220	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	ATP binding|actin binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			NS(4)|breast(8)|central_nervous_system(2)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(13)|lung(72)|ovary(10)|prostate(7)|skin(9)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(3)	149						GATTTGATCTTCAAGGGTCCC	0.448000													44	14					0	0	1	0	0
MYPN	84665	broad.mit.edu	37	10	69959137	69959137	+	Missense_Mutation	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr10:69959137C>T	uc001jnm.4	+	17	3483	c.3298C>T	c.(3298-3300)Ccg>Tcg	p.P1100S	MYPN_uc001jnn.4_Missense_Mutation_p.P825S|MYPN_uc001jno.4_Missense_Mutation_p.P1100S|MYPN_uc009xpt.3_Missense_Mutation_p.P1100S|MYPN_uc010qit.2_Missense_Mutation_p.P806S|MYPN_uc010qiu.2_Non-coding_Transcript	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	Homo sapiens myopalladin (MYPN), transcript variant 1, mRNA.	1100	Ig-like 4.|Interaction with ACTN.					nucleus|sarcomere	actin binding	p.P1100P(1)		breast(2)|central_nervous_system(1)|endometrium(13)|kidney(6)|large_intestine(13)|liver(1)|lung(43)|ovary(3)|prostate(1)|skin(6)|upper_aerodigestive_tract(5)	94						GAGTGGTTTACCGCCCCCGGA	0.507000													41	68					0	0	1	0	0
ISPD	729920	broad.mit.edu	37	7	16255771	16255771	+	Missense_Mutation	SNP	G	G	C			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr7:16255771G>C	uc010ktx.2	-	8	1171	c.1171C>G	c.(1171-1173)Cta>Gta	p.L391V	ISPD_uc010kty.2_Missense_Mutation_p.L341V|LOC100506025_uc003stf.3_Intron|LOC100506025_uc022aae.1_Intron	NM_001101426	NP_001094896	A4D126	ISPD_HUMAN	Homo sapiens isoprenoid synthase domain containing (ISPD), transcript variant 1, mRNA.	391					isoprenoid biosynthetic process		nucleotidyltransferase activity			endometrium(1)|kidney(1)|large_intestine(3)|lung(3)|ovary(1)	9						ATCTGCATTAGGTTTTCCATT	0.303000										Multiple Myeloma(15;0.18)			21	16					0	0	1	0	0
NEDD4L	23327	broad.mit.edu	37	18	56033337	56033337	+	Missense_Mutation	SNP	G	G	C			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr18:56033337G>C	uc002lgy.3	+	20	2223	c.1940G>C	c.(1939-1941)aGa>aCa	p.R647T	NEDD4L_uc002lgz.3_Missense_Mutation_p.R583T|NEDD4L_uc002lgx.3_Missense_Mutation_p.R627T|NEDD4L_uc010xee.1_Missense_Mutation_p.R526T|NEDD4L_uc002lhc.2_Missense_Mutation_p.R639T|NEDD4L_uc002lhd.2_Missense_Mutation_p.R526T|NEDD4L_uc002lhb.2_Missense_Mutation_p.R506T|NEDD4L_uc002lhe.2_Missense_Mutation_p.R619T|NEDD4L_uc002lhf.3_Missense_Mutation_p.R506T|NEDD4L_uc002lhg.3_Missense_Mutation_p.R526T|NEDD4L_uc002lhh.2_Missense_Mutation_p.R422T	NM_001144967	NP_001138439	Q96PU5	NED4L_HUMAN	Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like (NEDD4L), transcript variant j, mRNA.	647	HECT.				cellular sodium ion homeostasis|excretion|interspecies interaction between organisms|positive regulation of endocytosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of protein catabolic process|response to metal ion|sodium ion transport|water homeostasis	cytoplasm	protein binding|sodium channel regulator activity|ubiquitin-protein ligase activity			breast(1)|endometrium(7)|kidney(3)|large_intestine(10)|lung(11)|ovary(1)|prostate(4)	37						CTAAAAGCTAGACTGTGGATT	0.408000													4	88					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21051260	21051260	+	Missense_Mutation	SNP	C	C	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr16:21051260C>A	uc010vbe.2	-	32	4644	c.4644G>T	c.(4642-4644)ttG>ttT	p.L1548F		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	Homo sapiens dynein, axonemal, heavy chain 3 (DNAH3), mRNA.	1548	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			NS(3)|autonomic_ganglia(1)|breast(12)|central_nervous_system(3)|cervix(2)|endometrium(15)|haematopoietic_and_lymphoid_tissue(4)|kidney(10)|large_intestine(42)|liver(2)|lung(57)|ovary(14)|pancreas(1)|prostate(7)|skin(11)|stomach(5)|upper_aerodigestive_tract(7)|urinary_tract(6)	202				GBM - Glioblastoma multiforme(48;0.207)		CTGTCCGGAACAAGGCCTGGA	0.488000													42	136					2.17126e-26	2.29898e-26	1	1	0
ARHGAP32	9743	broad.mit.edu	37	11	128936739	128936739	+	Missense_Mutation	SNP	T	T	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr11:128936739T>A	uc009zcp.3	-	5	514	c.514A>T	c.(514-516)Agt>Tgt	p.S172C	ARHGAP32_uc009zcq.2_Missense_Mutation_p.S132C|ARHGAP32_uc001qfb.3_5'UTR	NM_001142685	NP_055530	A7KAX9	RHG32_HUMAN	Homo sapiens Rho GTPase activating protein 32 (ARHGAP32), transcript variant 1, mRNA.	172	PX; atypical.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	Golgi membrane|cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			breast(2)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(12)|lung(28)|ovary(3)|prostate(6)|urinary_tract(3)	60						TCTTCATAACTTCTTTTAACA	0.348000													9	9					0	0	1	0	0
C19orf80	55908	broad.mit.edu	37	19	11350388	11350388	+	Silent	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr19:11350388C>T	uc021upg.1	+	0	94	c.75C>T	c.(73-75)ggC>ggT	p.G25G	DOCK6_uc010xlq.2_5'Flank|DOCK6_uc002mqs.4_Intron|C19orf80_uc010dxw.3_Intron	NM_018687	NP_061157	Q6UXH0	TD26_HUMAN	Homo sapiens chromosome 19 open reading frame 80 (C19orf80), mRNA.	25						extracellular region				NS(1)|breast(1)|endometrium(2)	4						CCCCCATGGGCGGCCCAGAAC	0.652000													41	48					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152127305	152127305	+	Missense_Mutation	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr1:152127305C>T	uc001ezs.1	-	2	2335	c.2270G>A	c.(2269-2271)cGa>cAa	p.R757Q		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	Homo sapiens repetin (RPTN), mRNA.	757	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding			breast(2)|central_nervous_system(1)|endometrium(14)|kidney(2)|large_intestine(1)|lung(32)|prostate(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	59						TTGCCTGTCTCGTCTCTGATG	0.512000													132	189					0	0	1	0	0
POLA1	5422	broad.mit.edu	37	X	24750526	24750526	+	Missense_Mutation	SNP	T	T	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chrX:24750526T>A	uc004dbl.3	+	15	1723	c.1708T>A	c.(1708-1710)Ttg>Atg	p.L570M		NM_016937	NP_058633	P09884	DPOLA_HUMAN	Homo sapiens polymerase (DNA directed), alpha 1, catalytic subunit (POLA1), mRNA.	570					DNA replication checkpoint|DNA replication, synthesis of RNA primer|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|cell proliferation|double-strand break repair via nonhomologous end joining|interspecies interaction between organisms|lagging strand elongation|leading strand elongation|regulation of transcription involved in G1/S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|cytoplasm|nuclear envelope|nuclear matrix|nucleolus|nucleoplasm	DNA-directed DNA polymerase activity|chromatin binding|metal ion binding|nucleoside binding			breast(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(5)|ovary(2)|skin(2)	11					Clofarabine(DB00631)|Fludarabine(DB01073)	CAGTTTTGCATTGGATAAAGC	0.398000													16	2					0	0	1	0	0
ALMS1	7840	broad.mit.edu	37	2	73836707	73836707	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr2:73836707C>T	uc002sje.1	+	22	12583	c.12472C>T	c.(12472-12474)Caa>Taa	p.Q4158*	ALMS1_uc002sjf.1_Nonsense_Mutation_p.Q4116*	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Homo sapiens Alstrom syndrome 1 (ALMS1), mRNA.	4158					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				breast(4)|endometrium(14)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(31)|lung(68)|ovary(4)|pancreas(4)|prostate(3)|skin(8)|upper_aerodigestive_tract(1)|urinary_tract(2)	147						AGTGACCAATCAACTTCTGGG	0.433000													10	30					0	0	1	0	0
TMEM125	128218	broad.mit.edu	37	1	43739036	43739036	+	Missense_Mutation	SNP	A	A	G			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr1:43739036A>G	uc021omm.1	+	0	643	c.643A>G	c.(643-645)Att>Gtt	p.I215V	EBNA1BP2_uc001cio.3_5'Flank|TMEM125_uc021oml.1_Missense_Mutation_p.I215V|TMEM125_uc001cir.3_Missense_Mutation_p.I215V	NM_144626	NP_653227	Q96AQ2	TM125_HUMAN	Homo sapiens transmembrane protein 125 (TMEM125), mRNA.	215						integral to membrane				breast(1)|large_intestine(1)|lung(1)	3	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CACATCCAGCATTGCCAGCCT	0.627000													64	61					0	0	1	0	0
IDI2	91734	broad.mit.edu	37	10	1066741	1066741	+	Missense_Mutation	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr10:1066741C>T	uc001ifv.1	-	3	397	c.332G>A	c.(331-333)cGt>cAt	p.R111H	IDI2-AS1_uc010qaf.1_5'Flank|IDI2-AS1_uc001ifx.3_5'Flank|IDI2-AS1_uc001ifw.3_5'Flank|IDI2-AS1_uc001ify.3_5'Flank	NM_033261	NP_150286	Q9BXS1	IDI2_HUMAN	Homo sapiens isopentenyl-diphosphate delta isomerase 2 (IDI2), mRNA.	111	Nudix hydrolase.				carotenoid biosynthetic process|cholesterol biosynthetic process	cytosol|peroxisome	hydrolase activity|isopentenyl-diphosphate delta-isomerase activity|metal ion binding			kidney(1)|large_intestine(3)|lung(3)|ovary(1)|upper_aerodigestive_tract(1)	9		Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.143)	Epithelial(11;0.067)|OV - Ovarian serous cystadenocarcinoma(14;0.169)|all cancers(11;0.192)		TGCTTGCAGACGCCTCTGGGC	0.572000													4	62					0	0	1	0	0
ZNF556	80032	broad.mit.edu	37	19	2877320	2877320	+	Missense_Mutation	SNP	C	C	T	rs143075091	byFrequency	TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr19:2877320C>T	uc002lwp.1	+	3	451	c.364C>T	c.(364-366)Cgt>Tgt	p.R122C	ZNF556_uc002lwq.3_Missense_Mutation_p.R121C	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	Homo sapiens zinc finger protein 556 (ZNF556), mRNA.	122					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(2)|kidney(1)|large_intestine(7)|lung(10)|pancreas(1)|prostate(3)|skin(7)	31				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGTAATAAACGTGGAAGAAC	0.373000													9	87					0	0	1	0	0
TMEM9	252839	broad.mit.edu	37	1	201123024	201123024	+	Missense_Mutation	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr1:201123024C>T	uc010ppo.2	-	1	124	c.28G>A	c.(28-30)Gtc>Atc	p.V10I	TMEM9_uc001gvx.3_Missense_Mutation_p.V10I|TMEM9_uc001gvy.3_Missense_Mutation_p.V10I|TMEM9_uc001gvz.3_Missense_Mutation_p.V10I|TMEM9_uc001gwa.3_Missense_Mutation_p.V10I|TMEM9_uc010ppp.1_Missense_Mutation_p.V10I	NM_016456	NP_057540	Q9P0T7	TMEM9_HUMAN	Homo sapiens transmembrane protein 9 (TMEM9), mRNA.	10					transport	integral to membrane|late endosome membrane|lysosomal membrane				liver(1)|lung(1)|stomach(1)	3		Breast(1374;0.000301)				AAACACCCGACCACAGCCACC	0.582000													73	132					0	0	1	0	0
CCT5	22948	broad.mit.edu	37	5	10263419	10263419	+	Silent	SNP	G	G	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr5:10263419G>A	uc003jeq.3	+	9	1662	c.1491G>A	c.(1489-1491)ggG>ggA	p.G497G	CCT5_uc011cmr.2_Silent_p.G442G|CCT5_uc011cms.2_Silent_p.G459G|CCT5_uc011cmt.2_Silent_p.G404G	NM_012073	NP_036205	P48643	TCPE_HUMAN	Homo sapiens chaperonin containing TCP1, subunit 5 (epsilon) (CCT5), mRNA.	497					'de novo' posttranslational protein folding|response to virus	microtubule organizing center|nucleolus	ATP binding|unfolded protein binding			NS(1)|breast(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(13)|ovary(2)|pancreas(1)|prostate(2)	26						TGCACAAGGGGACAAATGGTG	0.512000													31	38					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4859771	4859771	+	Missense_Mutation	SNP	G	G	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr3:4859771G>A	uc003bqc.3	+	58	8178	c.7828G>A	c.(7828-7830)Gaa>Aaa	p.E2610K	ITPR1_uc021wsi.1_Missense_Mutation_p.E2577K|ITPR1_uc021wsj.1_Missense_Mutation_p.E2562K|ITPR1_uc011asu.2_Missense_Mutation_p.E588K|ITPR1_uc010hcc.2_Missense_Mutation_p.E345K|ITPR1_uc011asv.2_Missense_Mutation_p.E301K	NM_001168272	NP_001161744	Q14643	ITPR1_HUMAN	Homo sapiens inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), transcript variant 3, mRNA.	2625					activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			NS(1)|autonomic_ganglia(1)|breast(10)|endometrium(15)|kidney(6)|large_intestine(27)|liver(1)|lung(27)|ovary(6)|pancreas(1)|prostate(4)|skin(5)|urinary_tract(2)	106				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		TTTAGGCTTGGAAAGAGACAA	0.448000													35	60					0	0	1	0	0
SLC12A2	6558	broad.mit.edu	37	5	127477532	127477532	+	Silent	SNP	T	T	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr5:127477532T>A	uc003kus.3	+	9	1796	c.1632T>A	c.(1630-1632)gtT>gtA	p.V544V	SLC12A2_uc010jdf.3_Non-coding_Transcript|SLC12A2_uc010jdg.3_Silent_p.V544V	NM_001046	NP_001037	P55011	S12A2_HUMAN	Homo sapiens solute carrier family 12 (sodium/potassium/chloride transporters), member 2 (SLC12A2), transcript variant 1, mRNA.	544					potassium ion transport|sodium ion transport|transepithelial ammonium transport|transepithelial chloride transport	integral to plasma membrane|membrane fraction	ammonia transmembrane transporter activity|sodium:potassium:chloride symporter activity			breast(3)|endometrium(5)|kidney(5)|large_intestine(12)|lung(16)|ovary(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	48		all_cancers(142;0.0972)|Prostate(80;0.151)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0433)|OV - Ovarian serous cystadenocarcinoma(64;0.0978)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	GTTCTTGTGTTGTTCGAGATG	0.308000													21	34					0	0	1	0	0
CD36	948	broad.mit.edu	37	7	80302113	80302113	+	Nonsense_Mutation	SNP	A	A	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr7:80302113A>T	uc003uhc.3	+	14	1837	c.1153A>T	c.(1153-1155)Aaa>Taa	p.K385*	CD36_uc011kgv.2_Nonsense_Mutation_p.K309*|CD36_uc003uhd.4_Nonsense_Mutation_p.K385*|CD36_uc003uhe.4_Nonsense_Mutation_p.K385*|CD36_uc003uhf.4_Nonsense_Mutation_p.K385*|CD36_uc003uhg.4_Nonsense_Mutation_p.K385*|CD36_uc003uhh.4_Nonsense_Mutation_p.K385*|CD36_uc022agu.1_Nonsense_Mutation_p.K346*|CD36_uc022agv.1_Nonsense_Mutation_p.K325*	NM_001127444	NP_001120916	P16671	CD36_HUMAN	Homo sapiens CD36 molecule (thrombospondin receptor) (CD36), transcript variant 5, mRNA.	385					cGMP-mediated signaling|cell adhesion|cholesterol transport|lipid metabolic process|lipid storage|lipoprotein transport|low-density lipoprotein particle clearance|nitric oxide mediated signal transduction|plasma membrane long-chain fatty acid transport|platelet activation|platelet degranulation|positive regulation of cell-matrix adhesion|positive regulation of macrophage derived foam cell differentiation	integral to plasma membrane|membrane fraction|platelet alpha granule membrane	lipid binding|low-density lipoprotein receptor activity|thrombospondin receptor activity|transforming growth factor beta binding			breast(1)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(10)|large_intestine(1)|lung(6)|ovary(1)	21						ACAATTTGCAAAACGGCTGCA	0.289000													77	39					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	GL000192.1	311414	311414	+	RNA	SNP	T	T	C			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chrGL000192.1:311414T>C	uc010yij.1	-	6		c.955A>G			HYDIN_uc021vdl.1_Non-coding_Transcript	NM_017558		Q4G0P3	HYDIN_HUMAN	Homo sapiens HYDIN, axonemal central pair apparatus protein (HYDIN), transcript variant 2, mRNA.											breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(17)|lung(12)|ovary(2)|skin(3)|stomach(2)|upper_aerodigestive_tract(1)	43		Ovarian(137;0.0654)				CGTATTTCTGTACAGTGTTGG	0.532000													3	39					0	0	1	0	0
GPR83	10888	broad.mit.edu	37	11	94113422	94113422	+	Missense_Mutation	SNP	T	T	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr11:94113422T>A	uc001pet.2	-	3	1337	c.1165A>T	c.(1165-1167)Aat>Tat	p.N389Y		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	Homo sapiens G protein-coupled receptor 83 (GPR83), mRNA.	389						integral to membrane|plasma membrane	neuropeptide Y receptor activity			NS(1)|breast(1)|central_nervous_system(2)|kidney(2)|large_intestine(2)|lung(9)|ovary(1)|prostate(1)	19		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				TGGCCATCATTCTTCTCTGTC	0.562000													67	88					0	0	1	0	0
C9orf174	100499483	broad.mit.edu	37	9	100128909	100128909	+	Silent	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr9:100128909C>T	uc011lut.2	+	44	5671	c.4665C>T	c.(4663-4665)tgC>tgT	p.C1555C	C9orf174_uc004axe.2_Silent_p.C1361C|C9orf174_uc011lus.2_Silent_p.C1142C|C9orf174_uc004axg.2_Silent_p.C1416C|C9orf174_uc004axh.2_Non-coding_Transcript	NM_020893	NP_065944	Q9P1Z9	CI174_HUMAN	Homo sapiens chromosome 9 open reading frame 174 (C9orf174), mRNA.	1361						integral to membrane		p.C1361C(1)		breast(1)|endometrium(4)|kidney(1)|lung(9)|urinary_tract(1)	16						TTGACCAGTGCGCCGAGAACA	0.532000													100	161					0	0	1	0	0
ACVR2A	92	broad.mit.edu	37	2	148676153	148676153	+	Missense_Mutation	SNP	A	A	G			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr2:148676153A>G	uc002twg.3	+	7	1223	c.954A>G	c.(952-954)atA>atG	p.I318M	ACVR2A_uc010zbn.2_Missense_Mutation_p.I210M|ACVR2A_uc002twh.3_Missense_Mutation_p.I318M	NM_001616	NP_001607	P27037	AVR2A_HUMAN	Homo sapiens activin A receptor, type IIA (ACVR2A), mRNA.	318	Protein kinase.				BMP signaling pathway|activin receptor signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of erythrocyte differentiation|positive regulation of osteoblast differentiation|positive regulation of protein phosphorylation	cytoplasm|inhibin-betaglycan-ActRII complex|integral to plasma membrane	ATP binding|coreceptor activity|inhibin beta-A binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(1)|kidney(5)|large_intestine(14)|liver(1)|lung(7)|ovary(1)|pancreas(1)|prostate(1)|skin(1)|stomach(8)	45				BRCA - Breast invasive adenocarcinoma(221;0.0969)		AACCTGCCATATCTCACAGGT	0.348000													15	21					0	0	1	0	0
MYO9B	4650	broad.mit.edu	37	19	17322846	17322846	+	Silent	SNP	G	G	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr19:17322846G>A	uc010eak.3	+	39	6353	c.6201G>A	c.(6199-6201)acG>acA	p.T2067T	MYO9B_uc002nfi.3_3'UTR|MYO9B_uc002nfm.1_3'UTR	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	Homo sapiens myosin IXB (MYO9B), transcript variant 1, mRNA.	2067	Tail.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	ADP binding|ATP binding|ATPase activity|Rho GTPase activator activity|actin binding|calmodulin binding|metal ion binding|microfilament motor activity	p.P2066H(1)		breast(3)|endometrium(9)|kidney(2)|large_intestine(1)|lung(19)|soft_tissue(1)|urinary_tract(4)	39						TCATGCCCACGGCCAACATCA	0.736000													19	13					0	0	1	0	0
IGF2R	3482	broad.mit.edu	37	6	160467594	160467594	+	Missense_Mutation	SNP	G	G	C			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr6:160467594G>C	uc003qta.3	+	14	2116	c.1968G>C	c.(1966-1968)aaG>aaC	p.K656N		NM_000876	NP_000867	P11717	MPRI_HUMAN	Homo sapiens insulin-like growth factor 2 receptor (IGF2R), mRNA.	656					receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			breast(2)|endometrium(15)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(27)|lung(31)|ovary(3)|pancreas(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	95		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		AGACAAAGAAGTATGACTTTT	0.413000													6	18					0	0	1	0	0
XPOT	11260	broad.mit.edu	37	12	64827226	64827226	+	Missense_Mutation	SNP	C	C	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr12:64827226C>A	uc001ssb.3	+	18	2801	c.2295C>A	c.(2293-2295)ttC>ttA	p.F765L		NM_007235	NP_009166	O43592	XPOT_HUMAN	Homo sapiens exportin, tRNA (nuclear export receptor for tRNAs) (XPOT), mRNA.	765	Necessary for tRNA-binding, cytoplasmic localization and nuclear export.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			NS(1)|breast(2)|central_nervous_system(3)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(7)|lung(12)|ovary(4)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	45				GBM - Glioblastoma multiforme(28;0.0404)		AACAGATGTTCATGCCCCTGC	0.383000													58	40					4.29146e-36	4.65339e-36	1	1	0
RB1CC1	9821	broad.mit.edu	37	8	53555097	53555097	+	Missense_Mutation	SNP	T	T	G			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr8:53555097T>G	uc003xre.4	-	17	4709	c.4151A>C	c.(4150-4152)aAg>aCg	p.K1384T	RB1CC1_uc003xrf.4_Missense_Mutation_p.K1384T	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Homo sapiens RB1-inducible coiled-coil 1 (RB1CC1), transcript variant 1, mRNA.	1384					autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ULK1-ATG13-FIP200 complex|cytosol|nucleus|pre-autophagosomal structure	protein binding			NS(2)|cervix(2)|endometrium(6)|kidney(4)|large_intestine(9)|lung(19)|ovary(8)|prostate(3)|skin(4)|stomach(1)|upper_aerodigestive_tract(2)	60		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				TTCTTCAAGCTTTTTCTTTTC	0.383000													32	40					0	0	1	0	0
ZFR2	23217	broad.mit.edu	37	19	3808936	3808936	+	Missense_Mutation	SNP	G	G	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr19:3808936G>A	uc002lyw.2	-	16	2491	c.2479C>T	c.(2479-2481)Ccc>Tcc	p.P827S		NM_015174	NP_055989	Q9UPR6	ZFR2_HUMAN	Homo sapiens zinc finger RNA binding protein 2 (ZFR2), transcript variant 1, mRNA.	827	DZF.					intracellular	nucleic acid binding|zinc ion binding			central_nervous_system(1)|kidney(3)|large_intestine(4)|lung(5)|pancreas(1)|prostate(1)|skin(1)	16				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00514)|STAD - Stomach adenocarcinoma(1328;0.19)		GGGCCCAGGGGCCCAGCCGCA	0.697000													11	8					0	0	1	0	0
SEPT5	5413	broad.mit.edu	37	22	19709430	19709430	+	Silent	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr22:19709430C>T	uc002zpv.2	+	9	1025	c.900C>T	c.(898-900)tgC>tgT	p.C300C	SEPT5_uc002zpw.1_Nonsense_Mutation_p.R306*|SEPT5_uc002zpx.1_Non-coding_Transcript|GP1BB_uc002zpz.2_5'UTR	NM_002688	NP_002679	Q99719	SEPT5_HUMAN	Homo sapiens septin 5 (SEPT5), transcript variant 1, mRNA.	300					cell cycle|cytokinesis|regulation of exocytosis|synaptic vesicle targeting	plasma membrane|septin complex|synaptic vesicle	GTP binding|GTPase activity|protein binding|structural molecule activity			lung(1)|upper_aerodigestive_tract(1)	2	Colorectal(54;0.0993)					ACGTGACGTGCGACGTGCACT	0.662000													30	58					0	0	1	0	0
ZNF366	167465	broad.mit.edu	37	5	71739709	71739709	+	Silent	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr5:71739709C>T	uc003kce.1	-	4	2295	c.2109G>A	c.(2107-2109)agG>agA	p.R703R		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	Homo sapiens zinc finger protein 366 (ZNF366), mRNA.	703					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|central_nervous_system(1)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(7)|lung(9)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)	35		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		TCTGAAAAGCCCTGAGACTGA	0.517000													12	22					0	0	1	0	0
NUP210L	91181	broad.mit.edu	37	1	154108401	154108401	+	Missense_Mutation	SNP	T	T	C			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr1:154108401T>C	uc001fdw.3	-	6	970	c.898A>G	c.(898-900)Aga>Gga	p.R300G	NUP210L_uc009woq.3_5'UTR|NUP210L_uc010peh.2_Missense_Mutation_p.R300G	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	Homo sapiens nucleoporin 210kDa-like (NUP210L), transcript variant 1, mRNA.	300						integral to membrane				NS(1)|breast(6)|central_nervous_system(1)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(12)|lung(34)|ovary(4)|pancreas(1)|prostate(2)|skin(6)|urinary_tract(2)	80	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			AGTGCAACTCTATGGTCTTGC	0.418000													20	48					0	0	1	0	0
ZCCHC14	23174	broad.mit.edu	37	16	87445209	87445209	+	Missense_Mutation	SNP	T	T	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr16:87445209T>A	uc002fjz.1	-	11	2734	c.2707A>T	c.(2707-2709)Agc>Tgc	p.S903C	ZCCHC14_uc002fka.1_Non-coding_Transcript|ZCCHC14_uc002fkb.3_Missense_Mutation_p.S679C	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	Homo sapiens zinc finger, CCHC domain containing 14 (ZCCHC14), mRNA.	903					cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			breast(2)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(5)|lung(10)|ovary(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(2)	36				BRCA - Breast invasive adenocarcinoma(80;0.0285)		AGGTTCCCGCTCTTTTTGTGA	0.597000													42	78					0	0	1	0	0
IL27RA	9466	broad.mit.edu	37	19	14150421	14150421	+	Missense_Mutation	SNP	G	G	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr19:14150421G>A	uc002mxx.3	+	2	743	c.320G>A	c.(319-321)gGc>gAc	p.G107D		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	Homo sapiens interleukin 27 receptor, alpha (IL27RA), mRNA.	107					cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity			breast(3)|endometrium(3)|kidney(2)|large_intestine(8)|lung(7)|ovary(1)|skin(1)|urinary_tract(1)	26						CTTGTCTGGGGCACTAAGGCA	0.612000													44	95					0	0	1	0	0
C19orf71	100128569	broad.mit.edu	37	19	3543943	3543943	+	Silent	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr19:3543943C>T	uc010xhm.2	+	3	586	c.565C>T	c.(565-567)Ctg>Ttg	p.L189L	MFSD12_uc002lxw.3_Intron|MFSD12_uc002lxx.3_Intron	NM_001135580	NP_001129052	A6NCJ1	CS071_HUMAN	Homo sapiens chromosome 19 open reading frame 71 (C19orf71), mRNA.	189										endometrium(2)	2						GGAGTGGGTCCTGGAACCATA	0.662000													96	172					0	0	1	0	0
TBC1D15	64786	broad.mit.edu	37	12	72233488	72233488	+	Splice_Site	SNP	T	T	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr12:72233488T>A	uc001swu.3	+	1	1	c.-74_splice	c.e1-1		TBC1D15_uc009zrv.2_Splice_Site|TBC1D15_uc001sww.3_Splice_Site|TBC1D15_uc010stt.2_Splice_Site|TBC1D15_uc001swv.3_Splice_Site	NM_022771	NP_073608	Q8TC07	TBC15_HUMAN	Homo sapiens TBC1 domain family, member 15 (TBC1D15), transcript variant 1, mRNA.								Rab GTPase activator activity|protein binding			NS(1)|endometrium(3)|kidney(1)|large_intestine(6)|lung(8)|prostate(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	24						TTATTCTAGTTTTGCCGGATG	0.607000													42	93					0	0	1	0	0
MBTPS1	8720	broad.mit.edu	37	16	84094306	84094306	+	Silent	SNP	G	G	C			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr16:84094306G>C	uc002fhi.3	-	19	3187	c.2685C>G	c.(2683-2685)gtC>gtG	p.V895V	MBTPS1_uc002fhh.3_Silent_p.V399V	NM_003791	NP_003782	Q14703	MBTP1_HUMAN	Homo sapiens membrane-bound transcription factor peptidase, site 1 (MBTPS1), mRNA.	895					cholesterol metabolic process|proteolysis	Golgi membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	serine-type endopeptidase activity			NS(1)|breast(2)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(12)|lung(10)|ovary(2)|prostate(2)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	41						TCTCTGGAGTGACTGAGCCTG	0.592000													43	56					0	0	1	0	0
C15orf39	56905	broad.mit.edu	37	15	75499667	75499667	+	Silent	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr15:75499667C>T	uc002azp.4	+	1	1598	c.1278C>T	c.(1276-1278)tgC>tgT	p.C426C	C15orf39_uc002azq.4_Silent_p.C426C|C15orf39_uc021sqm.1_Silent_p.C185C|C15orf39_uc002azr.4_5'Flank	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	Homo sapiens chromosome 15 open reading frame 39 (C15orf39), mRNA.	426										autonomic_ganglia(1)|breast(2)|endometrium(3)|large_intestine(4)|lung(4)|skin(1)|upper_aerodigestive_tract(1)	16						GCCAGCCCTGCTCAGAGCCTG	0.642000													45	71					0	0	1	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146322	70146322	+	Missense_Mutation	SNP	A	A	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr4:70146322A>T	uc003hej.3	+	0	106	c.104A>T	c.(103-105)cAt>cTt	p.H35L	UGT2B28_uc010ihr.3_Missense_Mutation_p.H35L	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	Homo sapiens UDP glucuronosyltransferase 2 family, polypeptide B28 (UGT2B28), transcript variant 1, mRNA.	35					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(16)|pancreas(1)|prostate(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	31					Flunitrazepam(DB01544)	GAATACAGCCATTGGATGAAT	0.458000													61	85					0	0	1	0	0
abParts	0	broad.mit.edu	37	2	89156866	89156866	+	RNA	SNP	T	T	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr2:89156866T>A	uc002sti.1	-	0		c.3409A>T			abParts_uc002stj.1_Non-coding_Transcript					Homo sapiens cDNA FLJ46682 fis, clone TRACH3011082, moderately similar to Ig kappa chain V-III region HAH precursor.																		GTGGGGGCACTTCTCCCTCTA	0.587000													32	46					0	0	1	0	0
SERPINA6	866	broad.mit.edu	37	14	94780584	94780584	+	Missense_Mutation	SNP	A	A	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr14:94780584A>T	uc001ycv.3	-	1	506	c.402T>A	c.(400-402)gaT>gaA	p.D134E	SERPINA6_uc010auv.3_Non-coding_Transcript	NM_001756	NP_001747	P08185	CBG_HUMAN	Homo sapiens serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 (SERPINA6), mRNA.	134					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(11)|ovary(1)|skin(4)|upper_aerodigestive_tract(1)	26		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	CCAGGCTGCCATCAAGAAACA	0.502000													28	41					0	0	1	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100453199	100453199	+	Missense_Mutation	SNP	C	C	G			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr12:100453199C>G	uc001tgq.3	-	13	2085	c.1856G>C	c.(1855-1857)cGa>cCa	p.R619P	UHRF1BP1L_uc001tgp.3_Missense_Mutation_p.R269P	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	Homo sapiens UHRF1 binding protein 1-like (UHRF1BP1L), transcript variant 1, mRNA.	619								p.R619Q(2)		breast(3)|central_nervous_system(2)|cervix(1)|endometrium(4)|kidney(5)|large_intestine(9)|lung(21)|ovary(3)|skin(1)|upper_aerodigestive_tract(1)	50						GTCAGAATGTCGACAGTTTGG	0.353000													17	62					0	0	1	0	0
GPN1	11321	broad.mit.edu	37	2	27858007	27858007	+	Splice_Site	SNP	G	G	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr2:27858007G>A	uc010ymc.2	+	7	493	c.472_splice	c.e7-1	p.A158_splice	ZNF512_uc010yly.1_Splice_Site|GPN1_uc010ezf.3_Splice_Site_p.A132_splice|GPN1_uc010yma.2_Splice_Site_p.A65_splice|GPN1_uc010ymb.2_Splice_Site_p.A49_splice|GPN1_uc010ymd.2_Splice_Site_p.A39_splice|GPN1_uc010ezg.1_Splice_Site_p.A39_splice	NM_007266	NP_001138520	Q9HCN4	GPN1_HUMAN	Homo sapiens GPN-loop GTPase 1 (GPN1), transcript variant 1, mRNA.	144						cytoplasm	GTP binding|nucleoside-triphosphatase activity|protein binding			endometrium(1)|large_intestine(1)|lung(12)	14						GTGGCTTTAGGCATCCTCATT	0.443000													60	94					0	0	1	0	0
UBN1	29855	broad.mit.edu	37	16	4908004	4908004	+	Missense_Mutation	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr16:4908004C>T	uc002cyb.3	+	2	602	c.263C>T	c.(262-264)tCa>tTa	p.S88L	UBN1_uc010uxw.2_Missense_Mutation_p.S88L|UBN1_uc002cyc.3_Missense_Mutation_p.S88L	NM_001079514	NP_058632	Q9NPG3	UBN1_HUMAN	Homo sapiens ubinuclein 1 (UBN1), transcript variant 2, mRNA.	88	Sufficient for interaction with HIRA.				chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			NS(1)|endometrium(6)|kidney(4)|large_intestine(10)|lung(12)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)	38						AAAGATCTGTCAGATCCTTTC	0.338000													6	16					0	0	1	0	0
PAPLN	89932	broad.mit.edu	37	14	73712877	73712877	+	Missense_Mutation	SNP	T	T	G			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr14:73712877T>G	uc010ttx.2	+	3	491	c.328T>G	c.(328-330)Tac>Gac	p.Y110D	PAPLN_uc001xnw.4_Missense_Mutation_p.Y110D|PAPLN_uc010arl.3_Non-coding_Transcript|PAPLN_uc010ttw.2_Non-coding_Transcript|PAPLN_uc010tty.2_Missense_Mutation_p.Y110D|BC044305_uc001xnx.3_5'Flank	NM_173462	NP_775733	O95428	PPN_HUMAN	Homo sapiens papilin, proteoglycan-like sulfated glycoprotein (PAPLN), mRNA.	110						proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			NS(2)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(4)|lung(11)|ovary(3)|pancreas(3)|prostate(5)|skin(3)|upper_aerodigestive_tract(3)	42				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		GCTGCCCTACTACAGCGGTGA	0.642000													12	21					0	0	1	0	0
FXR2	9513	broad.mit.edu	37	17	7497319	7497319	+	Missense_Mutation	SNP	T	T	G			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr17:7497319T>G	uc002gia.2	-	10	1389	c.1024A>C	c.(1024-1026)Atg>Ctg	p.M342L		NM_004860	NP_004851	P51116	FXR2_HUMAN	Homo sapiens fragile X mental retardation, autosomal homolog 2 (FXR2), mRNA.	342						cytosolic large ribosomal subunit	RNA binding|protein binding			NS(1)|breast(2)|endometrium(6)|kidney(1)|large_intestine(7)|lung(8)|prostate(1)	26				READ - Rectum adenocarcinoma(115;0.17)		AAGGGAACCATTCCCTAGAGA	0.532000													15	33					0	0	1	0	0
FAM155B	27112	broad.mit.edu	37	X	68748896	68748896	+	Missense_Mutation	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chrX:68748896C>T	uc004dxk.3	+	1	970	c.922C>T	c.(922-924)Cgc>Tgc	p.R308C		NM_015686	NP_056501	O75949	F155B_HUMAN	Homo sapiens family with sequence similarity 155, member B (FAM155B), mRNA.	308						integral to membrane				autonomic_ganglia(1)|breast(2)|endometrium(4)|large_intestine(2)|lung(4)|ovary(2)|pancreas(1)	16						GGAATGCCAGCGCTGGGTGCC	0.597000													66	10					0	0	1	0	0
STAC2	342667	broad.mit.edu	37	17	37373422	37373422	+	Silent	SNP	G	G	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr17:37373422G>A	uc002hrs.3	-	2	687	c.402C>T	c.(400-402)aaC>aaT	p.N134N	STAC2_uc010cvt.3_5'UTR	NM_198993	NP_945344	Q6ZMT1	STAC2_HUMAN	Homo sapiens SH3 and cysteine rich domain 2 (STAC2), mRNA.	134					intracellular signal transduction		metal ion binding			NS(2)|endometrium(1)|kidney(2)|large_intestine(1)|lung(7)|pancreas(1)|prostate(1)|skin(2)	17						CCTGTTTGGAGTTTCCTAGGA	0.562000													45	42					0	0	1	0	0
C1orf185	284546	broad.mit.edu	37	1	51578193	51578193	+	Missense_Mutation	SNP	G	G	C			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr1:51578193G>C	uc001csh.3	+	1	74	c.74G>C	c.(73-75)gGt>gCt	p.G25A		NM_001136508	NP_001129980	Q5T7R7	CA185_HUMAN	Homo sapiens chromosome 1 open reading frame 185 (C1orf185), mRNA.	25						integral to membrane		p.0?(3)		endometrium(1)	1						TTGGGAATTGGTTTCTTTGCT	0.303000													11	11					0	0	1	0	0
C14orf105	55195	broad.mit.edu	37	14	57960296	57960296	+	Silent	SNP	T	T	A			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr14:57960296T>A	uc010trl.1	-	0	281	c.138A>T	c.(136-138)tcA>tcT	p.S46S	C14orf105_uc001xcy.2_Silent_p.S46S|C14orf105_uc010trm.1_5'UTR|C14orf105_uc010trn.1_5'UTR|C14orf105_uc001xcz.2_Silent_p.S46S|C14orf105_uc010aox.1_Non-coding_Transcript|C14orf105_uc010aoy.2_5'UTR	NM_018168	NP_060638	Q9NVL8	CN105_HUMAN	Homo sapiens chromosome 14 open reading frame 105 (C14orf105), mRNA.	46										breast(1)|cervix(1)|endometrium(1)|large_intestine(3)|lung(3)|prostate(1)|skin(1)	11						GTCTTGCCAGTGAATATGAAG	0.438000													25	32					0	0	1	0	0
SH3BP4	23677	broad.mit.edu	37	2	235949726	235949726	+	Missense_Mutation	SNP	C	C	G			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr2:235949726C>G	uc002vvp.3	+	3	706	c.313C>G	c.(313-315)Ccc>Gcc	p.P105A	SH3BP4_uc010fym.3_Missense_Mutation_p.P105A|SH3BP4_uc002vvq.3_Missense_Mutation_p.P105A	NM_014521	NP_055336	Q9P0V3	SH3B4_HUMAN	Homo sapiens SH3-domain binding protein 4 (SH3BP4), mRNA.	105	SH3.				endocytosis	clathrin-coated vesicle|coated pit|nucleus	protein binding			central_nervous_system(1)|endometrium(4)|kidney(3)|large_intestine(6)|lung(13)|ovary(4)|prostate(2)|skin(6)|stomach(3)|urinary_tract(2)	44		Breast(86;0.000332)|Renal(207;0.00339)|all_lung(227;0.00458)|all_hematologic(139;0.0296)|Lung NSC(271;0.0419)		Epithelial(121;7.66e-20)|BRCA - Breast invasive adenocarcinoma(100;0.000402)|Lung(119;0.00299)|LUSC - Lung squamous cell carcinoma(224;0.00645)|GBM - Glioblastoma multiforme(43;0.237)		GGGCTACATCCCCTCCTCCTA	0.537000													100	155					0	0	1	0	0
ZNF221	7638	broad.mit.edu	37	19	44471195	44471195	+	Missense_Mutation	SNP	G	G	C			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr19:44471195G>C	uc002oxx.2	+	5	1869	c.1541G>C	c.(1540-1542)aGa>aCa	p.R514T	ZNF221_uc010ejb.1_Missense_Mutation_p.R514T|ZNF221_uc010xws.1_Missense_Mutation_p.R514T	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	Homo sapiens zinc finger protein 221 (ZNF221), mRNA.	514					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|endometrium(1)|kidney(3)|large_intestine(7)|lung(11)|skin(3)|upper_aerodigestive_tract(3)|urinary_tract(1)	30		Prostate(69;0.0352)				TGTGGAAAGAGATTTACTCAG	0.428000													12	32					0	0	1	0	0
IFT81	28981	broad.mit.edu	37	12	110565896	110565896	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr12:110565896C>T	uc001tqi.3	+	2	320	c.190C>T	c.(190-192)Cga>Tga	p.R64*	IFT81_uc001tqh.3_Nonsense_Mutation_p.R64*|IFT81_uc001tqj.3_Non-coding_Transcript|IFT81_uc001tqg.3_Nonsense_Mutation_p.R64*	NM_001143779	NP_054774	Q8WYA0	IFT81_HUMAN	Homo sapiens intraflagellar transport 81 homolog (Chlamydomonas) (IFT81), transcript variant 3, mRNA.	64					cell differentiation|multicellular organismal development|spermatogenesis	intraflagellar transport particle B|microtubule-based flagellum		p.R64Q(1)		endometrium(1)|large_intestine(2)|lung(5)|ovary(1)|stomach(1)	10						GACAGCCAAACGAATGTTGAG	0.343000													25	55					0	0	1	0	0
MST1P9	11223	broad.mit.edu	37	1	17085590	17085595	+	In_Frame_Del	DEL	GCGCTG	GCGCTG	-			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr1:17085590_17085595delGCGCTG	uc010ock.2	-	8	1126_1131	c.1126_1131delCAGCGC	c.(1126-1131)cagcgcdel	p.QR376del	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.4_5'UTR					Homo sapiens macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 9 (MST1P9), non-coding RNA.									p.K375N(1)|p.Q376_R377delQR(1)|p.Q366_R367delQR(1)		breast(1)|endometrium(11)|kidney(9)|large_intestine(1)|lung(5)|pancreas(1)|prostate(4)|stomach(1)|urinary_tract(1)	34						CAGCGGACCAGCGCTGGCACTGGACA	0.704													5	11	---	---	---	---					
ARID1A	8289	broad.mit.edu	37	1	27106015	27106015	+	Frame_Shift_Del	DEL	C	C	-			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr1:27106015delC	uc001bmv.1	+	19	5999	c.5626delC	c.(5626-5628)ccafs	p.P1876fs	ARID1A_uc001bmu.1_Frame_Shift_Del_p.P1659fs|ARID1A_uc001bmx.1_Frame_Shift_Del_p.P722fs|ARID1A_uc009vsm.1_Frame_Shift_Del_p.P204fs|ARID1A_uc009vsn.1_Frame_Shift_Del_p.P118fs	NM_006015	NP_006006	O14497	ARI1A_HUMAN	Homo sapiens AT rich interactive domain 1A (SWI-like) (ARID1A), transcript variant 1, mRNA.	1876					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	SWI/SNF complex|nBAF complex|npBAF complex	DNA binding|protein binding		ARID1A/MAST2_ENST00000361297(2)	NS(1)|autonomic_ganglia(1)|biliary_tract(1)|breast(13)|central_nervous_system(6)|cervix(2)|endometrium(56)|haematopoietic_and_lymphoid_tissue(8)|kidney(10)|large_intestine(41)|liver(31)|lung(34)|ovary(130)|pancreas(18)|prostate(8)|skin(9)|stomach(14)|upper_aerodigestive_tract(4)|urinary_tract(24)	411		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		ACCCTGCCCACCAGCCCCTCG	0.622			"""Mis, N, F, S, D"""		"""clear cell ovarian carcinoma, RCC"""								52	70	---	---	---	---					
FAM21C	253725	broad.mit.edu	37	10	46282636	46282644	+	In_Frame_Del	DEL	GAGGCCGGT	GAGGCCGGT	-			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr10:46282636_46282644delGAGGCCGGT	uc001jcu.3	+	26	3083_3091	c.2965_2973delGAGGCCGGT	c.(2965-2973)gaggccggtdel	p.EAG989del	FAM21C_uc010qfk.2_In_Frame_Del_p.EAG948del|FAM21C_uc010qfi.2_In_Frame_Del_p.EAG914del|FAM21C_uc010qfj.2_In_Frame_Del_p.EAG200del|FAM21C_uc001jcw.3_5'UTR	NM_015262	NP_056077	A8K5W5	A8K5W5_HUMAN	Homo sapiens family with sequence similarity 21, member C (FAM21C), transcript variant 1, mRNA.	989										central_nervous_system(1)|endometrium(5)|kidney(1)|large_intestine(6)|lung(8)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	28						CGGGAGTGGGGAGGCCGGTGTGAGTTTTG	0.488													27	24	---	---	---	---					
WNK1	65125	broad.mit.edu	37	12	970297	970297	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr12:970297delA	uc021qss.1	+	6	2382	c.1739delA	c.(1738-1740)gaafs	p.E580fs	WNK1_uc001qio.4_Frame_Shift_Del_p.E580fs|WNK1_uc021qst.1_Frame_Shift_Del_p.E580fs|WNK1_uc001qip.4_Frame_Shift_Del_p.E580fs|WNK1_uc001qir.4_Frame_Shift_Del_p.E27fs	NM_001184985	NP_001171914	Q9H4A3	WNK1_HUMAN	Homo sapiens WNK lysine deficient protein kinase 1 (WNK1), transcript variant 4, mRNA.	580					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity	p.E580E(1)|p.?(1)		breast(7)|central_nervous_system(1)|endometrium(3)|kidney(6)|large_intestine(15)|lung(43)|ovary(6)|prostate(3)|skin(7)|stomach(8)|upper_aerodigestive_tract(3)|urinary_tract(2)	104	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			GAGGAGCAAGAAAAAAAAAAG	0.468													9	87	---	---	---	---					
WDR16	146845	broad.mit.edu	37	17	9503401	9503402	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	g.chr17:9503401_9503402insT	uc010coc.3	+	6	913_914	c.684_685insT	c.(682-687)agctttfs	p.S228fs	WDR16_uc002gly.3_Frame_Shift_Ins_p.S218fs|WDR16_uc002glz.3_Frame_Shift_Ins_p.S150fs			Q8N1V2	WDR16_HUMAN	Homo sapiens WD repeat domain 16 (WDR16), transcript variant 2, mRNA.	218						cytoplasm|intracellular membrane-bounded organelle	protein binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(7)|lung(11)|ovary(1)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)	31						ATGATGATAGCTTTTTCTACCT	0.485													7	162	---	---	---	---					
