Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2ML1	144568	broad.mit.edu	37	12	9027480	9027480	+	Intron	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67171024	67171024	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215820017	215820017	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48411995	48411995	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48210987	48210987	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183706311	183706311	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF1	23	broad.mit.edu	37	6	30545863	30545863	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD12	26090	broad.mit.edu	37	20	25349309	25349309	+	Intron	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACIN1	22985	broad.mit.edu	37	14	23531439	23531439	+	Missense_Mutation	SNP	C	A	A	rs138390500	byFrequency	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSF2	80221	broad.mit.edu	37	17	48552029	48552029	+	3'UTR	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTC1	70	broad.mit.edu	37	15	35084559	35084559	+	Intron	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTG2	72	broad.mit.edu	37	2	74128468	74128468	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACY1	95	broad.mit.edu	37	3	52020173	52020173	+	Intron	SNP	T	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156890363	156890363	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM20	8748	broad.mit.edu	37	14	70990220	70990220	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106757532	106757533	+	Intron	DNP	CC	AA	AA			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106967177	106967177	+	RNA	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107169865	107169865	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33614470	33614470	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100537779	100537779	+	Silent	SNP	C	A	A	rs151305163	byFrequency	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	128862046	128862046	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178562885	178562885	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL4	54507	broad.mit.edu	37	1	150529664	150529664	+	Missense_Mutation	SNP	C	A	A	rs140528374		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7520760	7520760	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31123989	31123989	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH8A1	64577	broad.mit.edu	37	6	135239695	135239695	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPPL2	251	broad.mit.edu	37	2	233274218	233274218	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPP	250	broad.mit.edu	37	2	233244564	233244564	+	Nonsense_Mutation	SNP	C	A	A	rs147926516	byFrequency	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114117535	114117535	+	Missense_Mutation	SNP	C	A	A	rs146964054	byFrequency;by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114278920	114278920	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95514953	95514953	+	RNA	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS6	203286	broad.mit.edu	37	9	101552330	101552330	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF2	10564	broad.mit.edu	37	20	47626850	47626850	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24942256	24942256	+	Silent	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF15	22899	broad.mit.edu	37	17	8215575	8215576	+	Frame_Shift_Ins	INS	-	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF5	7984	broad.mit.edu	37	7	144075972	144075972	+	Intron	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL6IP1	23204	broad.mit.edu	37	16	18812850	18812850	+	5'UTR	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP3	55616	broad.mit.edu	37	1	23765385	23765385	+	Intron	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155449990	155449990	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF5	22809	broad.mit.edu	37	19	50434063	50434063	+	5'UTR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160124868	160124868	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160137041	160137041	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A1	10396	broad.mit.edu	37	4	42592739	42592739	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117185778	117185778	+	Silent	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GAT3	26229	broad.mit.edu	37	11	62384573	62384573	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33573434	33573434	+	Intron	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33573735	33573735	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156619804	156619804	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLID	414899	broad.mit.edu	37	11	121986432	121986432	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLK	640	broad.mit.edu	37	8	11414365	11414365	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC1	646	broad.mit.edu	37	15	83926424	83926424	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRIP1	83990	broad.mit.edu	37	17	59937249	59937249	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK2	9024	broad.mit.edu	37	11	1457240	1457240	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSG	682	broad.mit.edu	37	19	580858	580858	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD16	118663	broad.mit.edu	37	10	124058702	124058702	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf63	79864	broad.mit.edu	37	11	122775270	122775270	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf74	119710	broad.mit.edu	37	11	36669581	36669581	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf74	119710	broad.mit.edu	37	11	36669586	36669586	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf115	55237	broad.mit.edu	37	14	74824273	74824273	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf60	283677	broad.mit.edu	37	15	73766335	73766335	+	Intron	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf48	84080	broad.mit.edu	37	16	67698948	67698948	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf166	128826	broad.mit.edu	37	20	61151344	61151344	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf9	23313	broad.mit.edu	37	22	45601990	45601990	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf78	388960	broad.mit.edu	37	2	74043317	74043317	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf19	51244	broad.mit.edu	37	3	14712602	14712603	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf165	154313	broad.mit.edu	37	6	88138502	88138502	+	Silent	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf30	115416	broad.mit.edu	37	7	23340417	23340417	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf135	138255	broad.mit.edu	37	9	72472765	72472765	+	Intron	DEL	T	-	-			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf72	203228	broad.mit.edu	37	9	27560172	27560172	+	Intron	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf93	203238	broad.mit.edu	37	9	15777827	15777827	+	Intron	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2721098	2721098	+	Silent	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181620507	181620507	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86062539	86062539	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27458430	27458430	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALM1	801	broad.mit.edu	37	14	90870237	90870237	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALN1	83698	broad.mit.edu	37	7	71252897	71252897	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110496280	110496280	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP5	838	broad.mit.edu	37	11	104879698	104879698	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ1	844	broad.mit.edu	37	1	160165582	160165582	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179742647	179742647	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC46	201134	broad.mit.edu	37	17	63822403	63822403	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC54	84692	broad.mit.edu	37	3	107096271	107096271	+	5'UTR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC74B	91409	broad.mit.edu	37	2	130902638	130902638	+	5'Flank	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85626593	85626594	+	Intron	DNP	CA	AG	AG			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD226	10666	broad.mit.edu	37	18	67614136	67614136	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD22	933	broad.mit.edu	37	19	35835907	35835907	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD79B	974	broad.mit.edu	37	17	62008828	62008828	+	Intron	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24537633	24537633	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24593348	24593348	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH16	1014	broad.mit.edu	37	16	66942271	66942271	+	3'UTR	DEL	C	-	-			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73521842	73521842	+	Intron	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31323074	31323074	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85961609	85961609	+	Missense_Mutation	SNP	G	C	C	rs142631189		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL	9425	broad.mit.edu	37	6	4716036	4716036	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55893613	55893613	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST5	23563	broad.mit.edu	37	16	75563159	75563159	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CILP	8483	broad.mit.edu	37	15	65491382	65491382	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCC1	23155	broad.mit.edu	37	1	109477201	109477202	+	Intron	DNP	CA	AG	AG			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC14A	161198	broad.mit.edu	37	14	38724679	38724679	+	Silent	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS2	134829	broad.mit.edu	37	6	123318960	123318960	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	87917456	87917456	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74420314	74420314	+	Intron	SNP	C	A	A	rs141670671	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100064485	100064485	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86590968	86590968	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189863365	189863365	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107920682	107920682	+	Intron	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48610962	48610962	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61468270	61468270	+	Intron	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61468487	61468487	+	Silent	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197396716	197396716	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD1	83690	broad.mit.edu	37	8	75898471	75898471	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRLF2	64109	broad.mit.edu	37	X	1317371	1317371	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1424475	1424475	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37331635	37331635	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1A1L	122011	broad.mit.edu	37	13	37678663	37678663	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	10973545	10973545	+	3'UTR	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSL2	1515	broad.mit.edu	37	9	99799533	99799533	+	Splice_Site	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F22	126410	broad.mit.edu	37	19	15648322	15648322	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAGLB	221955	broad.mit.edu	37	7	6470059	6470059	+	Intron	DEL	T	-	-			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBF4	10926	broad.mit.edu	37	7	87526732	87526732	+	Intron	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155278316	155278316	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK2	166614	broad.mit.edu	37	4	151125168	151125168	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCP1B	196513	broad.mit.edu	37	12	2064594	2064594	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFA6	1671	broad.mit.edu	37	8	6782269	6782269	+	3'UTR	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140301269	140301269	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC5	9681	broad.mit.edu	37	22	32205478	32205478	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKZ	8525	broad.mit.edu	37	11	46388906	46388906	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX38	9785	broad.mit.edu	37	16	72141383	72141383	+	Silent	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX9	1660	broad.mit.edu	37	1	182843888	182843888	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124336238	124336238	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNER	92737	broad.mit.edu	37	2	230411704	230411704	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25551437	25551437	+	Intron	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116594355	116594355	+	Intron	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35144371	35144371	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28598198	28598198	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103091378	103091378	+	Silent	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71778333	71778333	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71797160	71797160	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1P9	441032	broad.mit.edu	37	4	106406989	106406989	+	3'UTR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEPD1	80820	broad.mit.edu	37	7	36194118	36194118	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGLN3	112399	broad.mit.edu	37	14	34398197	34398197	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELSPBP1	64100	broad.mit.edu	37	19	48517686	48517686	+	Intron	SNP	C	A	A	rs138357579	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML5	161436	broad.mit.edu	37	14	89178849	89178849	+	Intron	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR3	84658	broad.mit.edu	37	19	14736374	14736374	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENDOD1	23052	broad.mit.edu	37	11	94861876	94861876	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX1	55068	broad.mit.edu	37	13	43930154	43930154	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX2	10495	broad.mit.edu	37	X	129837188	129837188	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPPK1	83481	broad.mit.edu	37	8	144947001	144947001	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56277675	56277675	+	Silent	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC4	2072	broad.mit.edu	37	16	14038472	14038472	+	Intron	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EREG	2069	broad.mit.edu	37	4	75250344	75250344	+	Intron	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVX1	2128	broad.mit.edu	37	7	27282988	27282988	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169541371	169541371	+	Intron	SNP	G	T	T	rs113847605	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F7	2155	broad.mit.edu	37	13	113773023	113773023	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM119B	25895	broad.mit.edu	37	12	58174037	58174037	+	Splice_Site	DEL	G	-	-	rs143311691		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131521635	131521635	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169A	26049	broad.mit.edu	37	5	74077851	74077852	+	Intron	DNP	GG	AT	AT			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM180A	389558	broad.mit.edu	37	7	135418891	135418891	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62104242	62104242	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067405	190067405	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190203680	190203680	+	Intron	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65B	9750	broad.mit.edu	37	6	24843714	24843714	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN2	2199	broad.mit.edu	37	3	13678060	13678060	+	Silent	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125025722	125025723	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125074047	125074047	+	Intron	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125330618	125330618	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD2	221472	broad.mit.edu	37	6	36976674	36976674	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ36000	284124	broad.mit.edu	37	17	21904226	21904226	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128492561	128492561	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT3	2322	broad.mit.edu	37	13	28607904	28607904	+	Intron	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN1	342184	broad.mit.edu	37	15	33091096	33091096	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	172060985	172060985	+	Intron	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNTA	2339	broad.mit.edu	37	8	42940031	42940031	+	Intron	SNP	T	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLR3	2352	broad.mit.edu	37	11	71847143	71847143	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXF1	2294	broad.mit.edu	37	16	86545096	86545096	+	Silent	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXO1	2308	broad.mit.edu	37	13	41193967	41193967	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49216164	49216164	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL4	23105	broad.mit.edu	37	5	132560674	132560674	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL4	23105	broad.mit.edu	37	5	132902931	132902931	+	Intron	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17473038	17473038	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46307719	46307719	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALK2	2585	broad.mit.edu	37	15	49470930	49470930	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L1	10634	broad.mit.edu	37	22	29706371	29706371	+	Intron	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89658733	89658733	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCK	2645	broad.mit.edu	37	7	44187449	44187449	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA3	2676	broad.mit.edu	37	5	137589715	137589715	+	Intron	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHITM	27069	broad.mit.edu	37	10	85901135	85901135	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42468602	42468602	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJB7	375519	broad.mit.edu	37	6	88008864	88008864	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJD4	219770	broad.mit.edu	37	10	35896766	35896766	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6639473	6639473	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPS	8833	broad.mit.edu	37	3	155649570	155649570	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB2L1	10399	broad.mit.edu	37	5	180664968	180664968	+	Intron	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNGT2	2793	broad.mit.edu	37	17	47284772	47284772	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNRHR	2798	broad.mit.edu	37	4	68619639	68619639	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR139	124274	broad.mit.edu	37	16	20043721	20043721	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11738806	11738806	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37307561	37307561	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66765685	66765685	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS5	23354	broad.mit.edu	37	19	36109979	36109979	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS6	54801	broad.mit.edu	37	9	19102703	19102703	+	5'UTR	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45262155	45262155	+	Silent	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45267293	45267293	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDC	3067	broad.mit.edu	37	15	50557759	50557759	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28475374	28475374	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186026523	186026523	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPN	3249	broad.mit.edu	37	19	35551242	35551242	+	Intron	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152187539	152187540	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118441194	118441194	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPB3	8988	broad.mit.edu	37	5	53751521	53751522	+	5'UTR	DNP	GG	TT	TT			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR6	3362	broad.mit.edu	37	1	19992913	19992913	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65677097	65677098	+	Intron	DNP	CC	AA	AA			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23387344	23387344	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGJ	3512	broad.mit.edu	37	4	71522923	71522923	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGLON5	402665	broad.mit.edu	37	19	51830589	51830589	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111663784	111663784	+	Silent	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB1	3594	broad.mit.edu	37	19	18174812	18174812	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL22	50616	broad.mit.edu	37	12	68645275	68645275	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80C	125476	broad.mit.edu	37	18	33048628	33048628	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4A	3631	broad.mit.edu	37	2	99175841	99175841	+	Intron	SNP	G	C	C	rs142829023	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS4L1	285905	broad.mit.edu	37	7	64673026	64673026	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75923175	75923175	+	Intron	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182400098	182400098	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31284711	31284711	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31388320	31388320	+	Splice_Site	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP3	282973	broad.mit.edu	37	10	133967582	133967582	+	Intron	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH4	84502	broad.mit.edu	37	14	24045665	24045665	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAZ	23254	broad.mit.edu	37	1	14925597	14925597	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163693240	163693240	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK13	56659	broad.mit.edu	37	14	90528604	90528604	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215368240	215368240	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78771774	78771774	+	Silent	SNP	A	G	G	rs146803262		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0195	9772	broad.mit.edu	37	17	73486159	73486159	+	Intron	DEL	A	-	-	rs34908427		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0586	9786	broad.mit.edu	37	14	58988558	58988558	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24832238	24832238	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1715	80856	broad.mit.edu	37	2	176812337	176812337	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72346802	72346802	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154395153	154395153	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154396937	154396937	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70535680	70535680	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL7	55975	broad.mit.edu	37	7	23163444	23163444	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT17	3872	broad.mit.edu	37	17	39778674	39778674	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT24	192666	broad.mit.edu	37	17	38859882	38859882	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT85	3891	broad.mit.edu	37	12	52756686	52756686	+	Silent	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCORL	254251	broad.mit.edu	37	4	17913272	17913272	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169689827	169689827	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHPP	64077	broad.mit.edu	37	10	126186509	126186509	+	Intron	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75622431	75622431	+	Intron	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX9	56956	broad.mit.edu	37	1	197890336	197890336	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA4	23547	broad.mit.edu	37	19	54850356	54850356	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMK2	3985	broad.mit.edu	37	22	31673092	31673092	+	Intron	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN7C	55327	broad.mit.edu	37	11	27523568	27523568	+	Intron	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LLGL2	3993	broad.mit.edu	37	17	73566413	73566413	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC150776	150776	broad.mit.edu	37	2	132276947	132276947	+	Intron	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442421	442421	broad.mit.edu	37	9	66500773	66500773	+	RNA	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22712446	22712446	+	RNA	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62641358	62641358	+	Intron	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP12	29967	broad.mit.edu	37	8	105503016	105503016	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141441481	141441481	+	Intron	DEL	C	-	-	rs112362832	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC50	123872	broad.mit.edu	37	16	84199428	84199428	+	Silent	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70291569	70291569	+	Intron	SNP	T	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	116163754	116163754	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTB4R	1241	broad.mit.edu	37	14	24785218	24785218	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP4	8425	broad.mit.edu	37	19	41112287	41112287	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTR1	8216	broad.mit.edu	37	22	21344036	21344036	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML3	55534	broad.mit.edu	37	4	141074131	141074131	+	Silent	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K3	4215	broad.mit.edu	37	17	61767648	61767648	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK15	225689	broad.mit.edu	37	8	144804160	144804160	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP1	9479	broad.mit.edu	37	11	45925993	45925993	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK4	57787	broad.mit.edu	37	19	45762240	45762240	+	Intron	SNP	C	A	A	rs76754165	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM3	4172	broad.mit.edu	37	6	52143587	52143587	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA1	266727	broad.mit.edu	37	6	37605236	37605236	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	169098912	169098912	+	Intron	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42858893	42858893	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA2	117153	broad.mit.edu	37	14	39717248	39717248	+	Silent	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIOS	54468	broad.mit.edu	37	7	7622753	7622753	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIRLET7B	406884	broad.mit.edu	37	22	46508727	46508727	+	5'Flank	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP14	4323	broad.mit.edu	37	14	23313757	23313757	+	Intron	SNP	G	T	T	rs17881877	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNX1	3110	broad.mit.edu	37	7	156802314	156802314	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108836920	108836920	+	5'UTR	SNP	A	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108836924	108836924	+	5'UTR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4L2	9643	broad.mit.edu	37	X	102931227	102931227	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH9	10198	broad.mit.edu	37	12	123686676	123686676	+	Intron	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX4	117196	broad.mit.edu	37	11	18195827	18195827	+	3'UTR	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A15	219995	broad.mit.edu	37	11	60543033	60543033	+	Intron	SNP	A	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTL5	9633	broad.mit.edu	37	11	68514791	68514791	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR9	66036	broad.mit.edu	37	8	11177238	11177238	+	Silent	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC13	56667	broad.mit.edu	37	3	124632247	124632247	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3228508	3228508	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77631213	77631213	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10258398	10258398	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH14	79784	broad.mit.edu	37	19	50735303	50735303	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10412764	10412764	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10363568	10363568	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26482247	26482248	+	Intron	DNP	GG	TT	TT			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128347777	128347777	+	Silent	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1914137	1914137	+	Intron	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101735286	101735286	+	Intron	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78574707	78574707	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEAL2	23218	broad.mit.edu	37	3	47043987	47043987	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCS1	23413	broad.mit.edu	37	9	132982108	132982108	+	Intron	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA3	4696	broad.mit.edu	37	19	54606218	54606218	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA8	4702	broad.mit.edu	37	9	124914622	124914622	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS3	4846	broad.mit.edu	37	7	150695563	150695563	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP4	261734	broad.mit.edu	37	1	5925161	5925161	+	Splice_Site	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPM1	4869	broad.mit.edu	37	5	170815075	170815075	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPPB	4879	broad.mit.edu	37	1	11918591	11918591	+	Intron	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1H4	9971	broad.mit.edu	37	12	100957284	100957284	+	3'UTR	DEL	G	-	-			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84711186	84711186	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN5P2	260294	broad.mit.edu	37	7	72419892	72419892	+	Silent	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88474439	88474439	+	Intron	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUAK1	9891	broad.mit.edu	37	12	106477704	106477704	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131745599	131745599	+	Silent	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183713606	183713606	+	Silent	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J3	441911	broad.mit.edu	37	1	159283997	159283997	+	Silent	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10V1	390201	broad.mit.edu	37	11	59480952	59480952	+	Missense_Mutation	SNP	G	T	T	rs499037	byFrequency;by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10X1	128367	broad.mit.edu	37	1	158549146	158549146	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247694784	247694784	+	3'UTR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G3	81469	broad.mit.edu	37	1	247769300	247769300	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248436974	248436975	+	Missense_Mutation	DNP	TG	GA	GA	rs150221634	byFrequency	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51E2	81285	broad.mit.edu	37	11	4703755	4703755	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G2	81282	broad.mit.edu	37	11	4936863	4936863	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A3	390083	broad.mit.edu	37	11	5968810	5968810	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L2	26338	broad.mit.edu	37	11	55595361	55595361	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5W2	390148	broad.mit.edu	37	11	55681357	55681357	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXCT1	5019	broad.mit.edu	37	5	41850032	41850032	+	Intron	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX4	5025	broad.mit.edu	37	12	121670211	121670211	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176564316	176564316	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCCA	5095	broad.mit.edu	37	13	100913261	100913261	+	Intron	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCCA	5095	broad.mit.edu	37	13	100953993	100954003	+	Intron	DEL	AGAAAAAAATT	-	-			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	5205718	5205718	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55755478	55755478	+	Silent	SNP	C	A	A	rs139853291	byFrequency	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140215250	140215250	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB5	26167	broad.mit.edu	37	5	140516961	140516961	+	Missense_Mutation	SNP	C	T	T	rs17844424		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB6	56130	broad.mit.edu	37	5	140529963	140529963	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA11	56105	broad.mit.edu	37	5	140801564	140801564	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140710439	140710439	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140774118	140774118	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82387975	82387975	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE	5118	broad.mit.edu	37	7	100205337	100205337	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK2	5126	broad.mit.edu	37	20	17462466	17462466	+	Silent	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72307602	72307602	+	Intron	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145075718	145075718	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE5A	8654	broad.mit.edu	37	4	120528482	120528482	+	Intron	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD7	79955	broad.mit.edu	37	10	102781508	102781508	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57328066	57328066	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGAP1	80055	broad.mit.edu	37	2	197757993	197757993	+	Intron	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGR	5241	broad.mit.edu	37	11	100909790	100909790	+	3'UTR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHIP	55023	broad.mit.edu	37	6	79697925	79697925	+	Splice_Site	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4K2A	55361	broad.mit.edu	37	10	99358794	99358794	+	Intron	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PICK1	9463	broad.mit.edu	37	22	38468665	38468665	+	Intron	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGK	10026	broad.mit.edu	37	1	77660920	77660920	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C3	5289	broad.mit.edu	37	18	39593637	39593637	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1P1	206426	broad.mit.edu	37	6	7988311	7988311	+	3'UTR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47906168	47906168	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81228608	81228608	+	Silent	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81240980	81240980	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81253859	81253859	+	Silent	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110516570	110516570	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125255416	125255416	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G10	8399	broad.mit.edu	37	16	14766619	14766619	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28856009	28856009	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB2	5330	broad.mit.edu	37	15	40594168	40594168	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD2	5338	broad.mit.edu	37	17	4713204	4713204	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208234017	208234017	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118199271	118199271	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD1	5424	broad.mit.edu	37	19	50916947	50916947	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76781857	76781857	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1K	152926	broad.mit.edu	37	4	89199209	89199209	+	Intron	SNP	T	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPME1	51400	broad.mit.edu	37	11	73950231	73950231	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47273634	47273634	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57183296	57183296	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROS1	5627	broad.mit.edu	37	3	93619674	93619674	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROX1	5629	broad.mit.edu	37	1	214171394	214171394	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD	5662	broad.mit.edu	37	10	104170785	104170785	+	Intron	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG2	5670	broad.mit.edu	37	19	43579616	43579616	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD14	10213	broad.mit.edu	37	2	162224311	162224311	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME4	23198	broad.mit.edu	37	2	54115279	54115279	+	Intron	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGIS	5740	broad.mit.edu	37	20	48164608	48164608	+	Intron	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH	5741	broad.mit.edu	37	11	13514029	13514029	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8636710	8636710	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PWP2	5822	broad.mit.edu	37	21	45534721	45534721	+	Intron	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB19	401409	broad.mit.edu	37	7	140125496	140125496	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220373873	220373873	+	Intron	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABL2A	11159	broad.mit.edu	37	2	114392758	114392758	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17697597	17697597	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GDS1	5910	broad.mit.edu	37	4	99342456	99342456	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GDS1	5910	broad.mit.edu	37	4	99342458	99342458	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASEF	158158	broad.mit.edu	37	9	85608024	85608024	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	49039189	49039189	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79350205	79350205	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETSAT	54884	broad.mit.edu	37	2	85572976	85572976	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REXO1L1	254958	broad.mit.edu	37	8	86840922	86840922	+	5'Flank	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101016380	101016380	+	Intron	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104898392	104898392	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK1	83732	broad.mit.edu	37	6	7404058	7404058	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF185	91445	broad.mit.edu	37	22	31583195	31583195	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK1	6093	broad.mit.edu	37	18	18629083	18629083	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10470400	10470400	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78681705	78681705	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTF1	23168	broad.mit.edu	37	15	41772384	41772384	+	Intron	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60194494	60194494	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP2	122042	broad.mit.edu	37	13	32356668	32356668	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237801948	237801948	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A4	6275	broad.mit.edu	37	1	153517281	153517281	+	5'UTR	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51174869	51174869	+	Silent	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SART3	9733	broad.mit.edu	37	12	108923815	108923815	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCARA3	51435	broad.mit.edu	37	8	27514324	27514324	+	Silent	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML2	10389	broad.mit.edu	37	X	18278317	18278317	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC14L5	9717	broad.mit.edu	37	16	5046831	5046831	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT14	346288	broad.mit.edu	37	7	55914407	55914407	+	Intron	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95030231	95030231	+	Missense_Mutation	SNP	C	G	G	rs140563422	byFrequency	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42618435	42618435	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETDB2	83852	broad.mit.edu	37	13	50057120	50057120	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26688836	26688836	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGOL2	151246	broad.mit.edu	37	2	201438669	201438669	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC3	53358	broad.mit.edu	37	9	91653240	91653241	+	Intron	DNP	CC	AA	AA			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC8	27181	broad.mit.edu	37	19	51957880	51957880	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF1	6504	broad.mit.edu	37	1	160589701	160589701	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC23A2	9962	broad.mit.edu	37	20	4850569	4850569	+	Frame_Shift_Del	DEL	G	-	-	rs138961929		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A12	8604	broad.mit.edu	37	2	172666787	172666787	+	Splice_Site	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107334804	107334805	+	Intron	DNP	GG	TT	TT			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A14	144195	broad.mit.edu	37	12	7984358	7984358	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A3	285641	broad.mit.edu	37	5	150657178	150657178	+	Silent	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A1	50651	broad.mit.edu	37	1	8390406	8390406	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1	6521	broad.mit.edu	37	17	42336745	42336745	+	Intron	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70530443	70530443	+	Intron	DEL	G	-	-			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168187753	168187753	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD4	55627	broad.mit.edu	37	2	130910786	130910786	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127334986	127334986	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-8	767584	broad.mit.edu	37	14	101429547	101429547	+	5'Flank	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX15	29907	broad.mit.edu	37	11	64806226	64806226	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214794564	214794564	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG7	6687	broad.mit.edu	37	16	89592826	89592826	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55653690	55653690	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131347078	131347078	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRMS	6725	broad.mit.edu	37	20	62173737	62173737	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SS18	6760	broad.mit.edu	37	18	23598156	23598156	+	3'UTR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104030904	104030904	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STC2	8614	broad.mit.edu	37	5	172755182	172755182	+	Silent	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11	6794	broad.mit.edu	37	19	1220663	1220676	+	Frame_Shift_Del	DEL	CCTGGACACCTTCT	-	-			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1B1	27284	broad.mit.edu	37	4	70596333	70596333	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113141747	113141747	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT16	83851	broad.mit.edu	37	14	62547784	62547784	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL3	94120	broad.mit.edu	37	6	159184269	159184269	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF5L	27097	broad.mit.edu	37	1	229738265	229738265	+	Missense_Mutation	SNP	G	T	T	rs145984199		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	159992709	159992709	+	Silent	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK2	9344	broad.mit.edu	37	16	29998953	29998953	+	Silent	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBPL2	387332	broad.mit.edu	37	14	55907125	55907125	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX4	9496	broad.mit.edu	37	17	59560748	59560748	+	Silent	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114837473	114837473	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	53303197	53303197	+	5'Flank	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP11	6954	broad.mit.edu	37	6	35090040	35090040	+	Missense_Mutation	SNP	C	A	A	rs142915532	byFrequency	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD6	221400	broad.mit.edu	37	6	46658781	46658781	+	Silent	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137928486	137928486	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137999998	137999998	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TINAGL1	64129	broad.mit.edu	37	1	32043087	32043087	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK1	9874	broad.mit.edu	37	2	171867901	171867901	+	Silent	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR9	54106	broad.mit.edu	37	3	52255676	52255676	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM116	89894	broad.mit.edu	37	12	112374751	112374751	+	Intron	DEL	C	-	-			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132A	54972	broad.mit.edu	37	11	60694569	60694569	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15430203	15430203	+	Intron	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS12	283471	broad.mit.edu	37	12	51237861	51237861	+	Intron	DEL	A	-	-			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29908673	29908673	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIP1	10318	broad.mit.edu	37	5	150422356	150422356	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175092666	175092666	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP2A	7153	broad.mit.edu	37	17	38560655	38560655	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579312	7579312	+	Silent	SNP	C	A	A	rs55863639		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP73	7161	broad.mit.edu	37	1	3648145	3648145	+	Intron	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM39	56658	broad.mit.edu	37	6	30297471	30297471	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP13	9319	broad.mit.edu	37	5	908067	908067	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TROVE2	6738	broad.mit.edu	37	1	193051691	193051691	+	Splice_Site	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRYX3	136541	broad.mit.edu	37	7	141952343	141952343	+	Silent	SNP	C	T	T	rs150069777		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81448829	81448829	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179477551	179477551	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTR	7276	broad.mit.edu	37	18	29173105	29173105	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2I	7329	broad.mit.edu	37	16	1364203	1364203	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2O	63893	broad.mit.edu	37	17	74392671	74392671	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B15	7366	broad.mit.edu	37	4	69535508	69535508	+	Intron	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54305977	54305977	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215822219	215822219	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP16	10600	broad.mit.edu	37	21	30422410	30422410	+	Intron	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP25	29761	broad.mit.edu	37	21	17135200	17135200	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP32	84669	broad.mit.edu	37	17	58348624	58348624	+	Intron	SNP	T	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	126132472	126132472	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23500704	23500704	+	IGR	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	40105524	40105524	+	IGR	SNP	G	T	T	rs116695830	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4496750	4496750	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58059681	58059681	+	IGR	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90848053	90848053	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	93343249	93343249	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94782917	94782917	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127396742	127396742	+	IGR	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80660260	80660260	+	IGR	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56574193	56574193	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90013367	90013367	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90823302	90823302	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22788302	22788302	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	42864206	42864206	+	IGR	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78191554	78191554	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32823665	32823666	+	IGR	INS	-	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59788882	59788882	+	IGR	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59788884	59788884	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	17360418	17360418	+	IGR	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	19091409	19091409	+	IGR	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	72945557	72945557	+	IGR	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	18762444	18762444	+	IGR	SNP	A	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	47022838	47022838	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20656018	20656018	+	IGR	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104469840	104469840	+	IGR	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106435708	106435708	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	11939111	11939111	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13882087	13882087	+	IGR	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	160865357	160865357	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	246676268	246676268	+	IGR	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	51624026	51624026	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80558310	80558311	+	IGR	DNP	AC	TT	TT			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	18071215	18071215	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23900768	23900768	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29874623	29874623	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10862558	10862558	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11114883	11114883	+	IGR	SNP	C	A	A	rs78419950	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14793979	14793979	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32999612	32999612	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107092216	107092216	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132384275	132384275	+	IGR	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	180265385	180265385	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	184472749	184472749	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	238475865	238475865	+	IGR	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80266390	80266390	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87372874	87372874	+	IGR	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90291061	90291061	+	IGR	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	155445744	155445744	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190394080	190394080	+	IGR	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70274752	70274752	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56718704	56718704	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	56298089	56298090	+	IGR	INS	-	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112160759	112160759	+	IGR	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	27498330	27498330	+	IGR	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53070648	53070648	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55778991	55778991	+	IGR	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55779174	55779174	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56243440	56243440	+	IGR	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56978336	56978336	+	IGR	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57880345	57880345	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63029011	63029011	+	IGR	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63036043	63036043	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63602047	63602047	+	IGR	SNP	G	T	T	rs147351996	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63894227	63894227	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	74128166	74128166	+	IGR	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	12287450	12287450	+	IGR	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44090354	44090354	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44174596	44174596	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	65617544	65617544	+	IGR	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90431452	90431452	+	IGR	SNP	C	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106594941	106594941	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	112765901	112765901	+	IGR	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52574220	52574220	+	IGR	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9387394	9387394	+	IGR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108313431	108313431	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTA1	51534	broad.mit.edu	37	6	142468394	142468394	+	5'Flank	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6085306	6085306	+	Nonsense_Mutation	SNP	G	A	A	rs61751288		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6085325	6085325	+	Silent	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6085432	6085432	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6085501	6085501	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6085519	6085519	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP11	51729	broad.mit.edu	37	12	14942151	14942151	+	Intron	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85642649	85642649	+	Silent	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85717660	85717660	+	Intron	SNP	T	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR33	55339	broad.mit.edu	37	2	128477085	128477085	+	Silent	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPI2	26100	broad.mit.edu	37	7	5256250	5256250	+	Silent	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78142463	78142463	+	Intron	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP1	7511	broad.mit.edu	37	10	111667332	111667332	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO7	23039	broad.mit.edu	37	8	21851870	21851870	+	Intron	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17211799	17211799	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT2	64132	broad.mit.edu	37	17	48437660	48437660	+	3'UTR	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC7	84186	broad.mit.edu	37	9	37356780	37356780	+	Intron	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145156362	145156362	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC2	7546	broad.mit.edu	37	13	100635008	100635010	+	In_Frame_Del	DEL	CCA	-	-			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT4	79698	broad.mit.edu	37	8	40532360	40532360	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF235	9310	broad.mit.edu	37	19	44791609	44791609	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF347	84671	broad.mit.edu	37	19	53645328	53645328	+	Silent	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF443	10224	broad.mit.edu	37	19	12542605	12542605	+	Silent	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF467	168544	broad.mit.edu	37	7	149461930	149461930	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF569	148266	broad.mit.edu	37	19	37917438	37917438	+	Intron	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF608	57507	broad.mit.edu	37	5	123982754	123982762	+	In_Frame_Del	DEL	TACTTCTCA	-	-			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF620	253639	broad.mit.edu	37	3	40553988	40553988	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71654429	71654429	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF704	619279	broad.mit.edu	37	8	81571991	81571991	+	Intron	SNP	T	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF746	155061	broad.mit.edu	37	7	149174757	149174757	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF765	91661	broad.mit.edu	37	19	53905611	53905611	+	Intron	SNP	G	C	C			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF777	27153	broad.mit.edu	37	7	149152475	149152475	+	Silent	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88966128	88966128	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF90	7643	broad.mit.edu	37	19	20235970	20235970	+	RNA	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF90	7643	broad.mit.edu	37	19	20235972	20235972	+	RNA	SNP	G	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048146	238048146	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZRANB3	84083	broad.mit.edu	37	2	136107556	136107556	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN22	342945	broad.mit.edu	37	19	58849613	58849613	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142727226	142727227	+	Intron	DNP	GG	TT	TT			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142827147	142827147	+	Intron	SNP	G	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	144833233	144833233	+	5'Flank	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	74992176	74992176	+	Intron	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136849149	136849149	+	5'Flank	SNP	C	A	A			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100143207	100143207	+	RNA	SNP	A	T	T			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
