Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7176510	7176510	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48244245	48244245	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67129805	67129805	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66985229	66985229	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87174141	87174141	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87222363	87222363	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD2	225	broad.mit.edu	37	12	39967449	39967449	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148577839	148577839	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAA1	30	broad.mit.edu	37	3	38169247	38169247	+	Intron	DEL	T	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61560494	61560495	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT11	26027	broad.mit.edu	37	1	55059696	55059696	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSBG1	23205	broad.mit.edu	37	15	78474244	78474244	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR1C	130399	broad.mit.edu	37	2	158443660	158443660	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39442717	39442717	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156917548	156917548	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM30	11085	broad.mit.edu	37	1	120437439	120437439	+	Silent	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM32	203102	broad.mit.edu	37	8	39128339	39128339	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106610292	106610292	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106899121	106899122	+	Intron	INS	-	T	T	rs149003826	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107083304	107083305	+	RNA	INS	-	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107198880	107198880	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33546180	33546180	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28304421	28304421	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADIPOQ	9370	broad.mit.edu	37	3	186572035	186572036	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1A	148	broad.mit.edu	37	8	26716696	26716696	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L2	84632	broad.mit.edu	37	10	116068192	116068192	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP5	729092	broad.mit.edu	37	10	75434452	75434452	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGFG2	3268	broad.mit.edu	37	7	100160401	100160401	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGRP	181	broad.mit.edu	37	16	67517407	67517407	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247068793	247068793	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHDC1	27245	broad.mit.edu	37	1	27874050	27874050	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105410567	105410567	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105418993	105418993	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AICDA	57379	broad.mit.edu	37	12	8758007	8758007	+	Silent	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243809167	243809167	+	Intron	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH16A1	126133	broad.mit.edu	37	19	49972188	49972188	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX5	240	broad.mit.edu	37	10	45937038	45937038	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALX1	8092	broad.mit.edu	37	12	85677553	85677553	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC7	51434	broad.mit.edu	37	12	110824047	110824047	+	Intron	SNP	C	T	T	rs150081950	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD52	283373	broad.mit.edu	37	12	56637983	56637983	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA8L2	244	broad.mit.edu	37	10	47756106	47756106	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOC3	8639	broad.mit.edu	37	17	41008646	41008646	+	3'UTR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21239701	21239701	+	Intron	SNP	A	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115348045	115348045	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156921330	156921330	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC2	84071	broad.mit.edu	37	6	109175689	109175689	+	Splice_Site	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23287196	23287196	+	Missense_Mutation	SNP	G	C	C	rs140763346	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX1	51309	broad.mit.edu	37	X	100808037	100808037	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX3	51566	broad.mit.edu	37	X	100879977	100879977	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3002452	3002452	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSH	347527	broad.mit.edu	37	X	2930968	2930968	+	Intron	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31314310	31314310	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160097655	160097655	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5A1	498	broad.mit.edu	37	18	43668274	43668274	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77276686	77276687	+	Intron	DNP	GG	TT	TT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7B	540	broad.mit.edu	37	13	52511839	52511839	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26133194	26133194	+	Silent	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76764011	76764011	+	Silent	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT2	124872	broad.mit.edu	37	17	47233830	47233830	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACH2	60468	broad.mit.edu	37	6	90660046	90660046	+	Silent	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11077866	11077866	+	Intron	SNP	G	A	A	rs77003513		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI2	576	broad.mit.edu	37	1	32202983	32202983	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69349085	69349085	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAMBI	25805	broad.mit.edu	37	10	28970176	28970176	+	Intron	SNP	A	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS1	8537	broad.mit.edu	37	20	52601943	52601943	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165548032	165548032	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11B	64919	broad.mit.edu	37	14	99723595	99723595	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICD1	636	broad.mit.edu	37	12	32480351	32480351	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC8	112401	broad.mit.edu	37	19	53793596	53793596	+	Missense_Mutation	SNP	A	G	G	rs144639389	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP6	654	broad.mit.edu	37	6	7880411	7880411	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1A	657	broad.mit.edu	37	10	88614985	88614985	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIPL	149428	broad.mit.edu	37	1	151015950	151015950	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPTF	2186	broad.mit.edu	37	17	65955616	65955616	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140482873	140482873	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD9	65980	broad.mit.edu	37	5	887437	887437	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD1	54014	broad.mit.edu	37	21	40569063	40569063	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	107848217	107848217	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf53	282966	broad.mit.edu	37	10	50916689	50916689	+	3'UTR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf48	55010	broad.mit.edu	37	12	102558439	102558439	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf179	112752	broad.mit.edu	37	14	76549202	76549202	+	Intron	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf50	145376	broad.mit.edu	37	14	65056006	65056006	+	Silent	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf62	57020	broad.mit.edu	37	16	19592895	19592895	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf49	124944	broad.mit.edu	37	17	6919343	6919343	+	Intron	SNP	T	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf66	256957	broad.mit.edu	37	17	34192056	34192056	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf85	55421	broad.mit.edu	37	17	3716652	3716652	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf85	55421	broad.mit.edu	37	17	3716655	3716655	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf63	284361	broad.mit.edu	37	19	50985350	50985350	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf66	55337	broad.mit.edu	37	19	10200201	10200201	+	Intron	SNP	T	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51770969	51770969	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf110	339512	broad.mit.edu	37	1	162824962	162824962	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf158	93190	broad.mit.edu	37	1	12815354	12815354	+	Intron	DEL	A	-	-	rs34558133		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75037193	75037193	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf21	81563	broad.mit.edu	37	1	184404564	184404564	+	Intron	SNP	G	A	A	rs150625478	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf49	84066	broad.mit.edu	37	1	178491003	178491003	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20234253	20234253	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf27A	29798	broad.mit.edu	37	2	132480034	132480034	+	5'Flank	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf14	84273	broad.mit.edu	37	4	57832821	57832821	+	Silent	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf103	79747	broad.mit.edu	37	6	147047226	147047226	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165714071	165714071	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf64	84060	broad.mit.edu	37	7	92158154	92158154	+	Silent	SNP	G	A	A	rs117787377	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57417664	57417664	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39311136	39311137	+	Intron	DNP	GG	TT	TT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39342057	39342057	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2702528	2702528	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181728030	181728030	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49084604	49084604	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18690715	18690715	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG2	10369	broad.mit.edu	37	22	36976106	36976106	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG3	10368	broad.mit.edu	37	16	24358052	24358052	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93063376	93063376	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1G	57172	broad.mit.edu	37	1	209773565	209773565	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1G	57172	broad.mit.edu	37	1	209785514	209785514	+	Silent	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CANX	821	broad.mit.edu	37	5	179150789	179150789	+	Intron	DEL	T	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN12	147968	broad.mit.edu	37	19	39234908	39234908	+	5'UTR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN4	140689	broad.mit.edu	37	20	54573508	54573508	+	3'UTR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31617678	31617678	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31682401	31682401	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB2	9133	broad.mit.edu	37	15	59408904	59408904	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072667	17072667	+	Silent	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1A	909	broad.mit.edu	37	1	158224560	158224561	+	Intron	DEL	TC	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1C	911	broad.mit.edu	37	1	158261218	158261218	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD4	920	broad.mit.edu	37	12	6923266	6923266	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157805856	157805856	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24488165	24488165	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24498602	24498602	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83251135	83251135	+	Intron	SNP	G	A	A	rs138221080	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95207035	95207035	+	Intron	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63511157	63511157	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61761122	61761122	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDR2	1039	broad.mit.edu	37	16	22360698	22360698	+	Silent	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13059281	13059281	+	Silent	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55857682	55857682	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGNL1	84952	broad.mit.edu	37	15	57816936	57816936	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40066017	40066017	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120306959	120306959	+	Missense_Mutation	SNP	C	T	T	rs142607751	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC17A	388512	broad.mit.edu	37	19	14710639	14710639	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4E	26253	broad.mit.edu	37	12	8688635	8688635	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS2	134829	broad.mit.edu	37	6	123369744	123369744	+	Intron	DEL	T	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79033557	79033557	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88218364	88218364	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76532538	76532538	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A1	1277	broad.mit.edu	37	17	48262859	48262859	+	3'UTR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139869536	139869536	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL29A1	256076	broad.mit.edu	37	3	130159540	130159540	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107408699	107408699	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48603688	48603688	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA4	51200	broad.mit.edu	37	7	129962469	129962469	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA5	93979	broad.mit.edu	37	7	130002699	130002699	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB2	1361	broad.mit.edu	37	13	46638834	46638834	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR2	1380	broad.mit.edu	37	1	207639899	207639899	+	Silent	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197390775	197390775	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBG3	131544	broad.mit.edu	37	3	97617768	97617768	+	Silent	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGB	1419	broad.mit.edu	37	2	209010586	209010586	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2820853	2820853	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2824068	2824068	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3165914	3165914	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	33985175	33985175	+	Silent	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113516162	113516162	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK2A1	1457	broad.mit.edu	37	20	480642	480642	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11365028	11365028	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11365032	11365032	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS2	56474	broad.mit.edu	37	X	16656934	16656934	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS2	56474	broad.mit.edu	37	X	16669442	16669442	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSK	1513	broad.mit.edu	37	1	150778513	150778513	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL2	8453	broad.mit.edu	37	10	35351869	35351869	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL4B	8450	broad.mit.edu	37	X	119694553	119694553	+	Intron	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49033040	49033040	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36156177	36156177	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A5	1577	broad.mit.edu	37	7	99250236	99250236	+	Missense_Mutation	SNP	G	T	T	rs28365083	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F3	4051	broad.mit.edu	37	19	15760590	15760590	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTIP	9595	broad.mit.edu	37	2	158283863	158283863	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4	26094	broad.mit.edu	37	14	73404849	73404849	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50278793	50278793	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50589841	50589841	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D1	54165	broad.mit.edu	37	3	182673076	182673076	+	Intron	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDB1	1642	broad.mit.edu	37	11	61079233	61079233	+	Intron	SNP	C	G	G	rs147201675	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX23	9416	broad.mit.edu	37	12	49226245	49226245	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1A	57706	broad.mit.edu	37	9	126389361	126389361	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140259690	140259690	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96194204	96194204	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61511020	61511020	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3L2	129563	broad.mit.edu	37	2	232978765	232978765	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIXDC1	85458	broad.mit.edu	37	11	111853179	111853179	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84245670	84245670	+	Silent	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG4	1742	broad.mit.edu	37	17	7096708	7096708	+	Intron	DEL	C	-	-	rs3215125		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79579535	79579535	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3879412	3879412	+	Silent	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP3	58512	broad.mit.edu	37	1	35365117	35365117	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13777181	13777181	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196892810	196892810	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC5G	285126	broad.mit.edu	37	2	27502927	27502927	+	Intron	SNP	C	A	A	rs142003915	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC6	9829	broad.mit.edu	37	1	65871552	65871552	+	Splice_Site	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM2	1785	broad.mit.edu	37	19	10904361	10904361	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25456948	25456948	+	3'UTR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169186708	169186708	+	Splice_Site	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37652556	37652556	+	Intron	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28584393	28584393	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28602248	28602248	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28609378	28609378	+	Intron	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK4	8798	broad.mit.edu	37	12	4711832	4711832	+	Intron	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38427022	38427022	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55267473	55267473	+	Intron	DEL	C	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55271082	55271083	+	Intron	DEL	AC	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3B	8662	broad.mit.edu	37	7	2406619	2406620	+	Intron	INS	-	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G3	8672	broad.mit.edu	37	1	21205910	21205910	+	Missense_Mutation	SNP	C	A	A	rs142520007		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF6	3692	broad.mit.edu	37	20	33867282	33867282	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELN	2006	broad.mit.edu	37	7	73474656	73474656	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX2	10495	broad.mit.edu	37	X	129837404	129837404	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP7	339221	broad.mit.edu	37	17	77707281	77707281	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPC2	26122	broad.mit.edu	37	2	149542538	149542538	+	Silent	SNP	T	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERAS	3266	broad.mit.edu	37	X	48688026	48688026	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC1	23085	broad.mit.edu	37	12	1137369	1137369	+	Silent	SNP	C	T	T	rs138791726	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC6L	54821	broad.mit.edu	37	X	71425426	71425426	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6	54536	broad.mit.edu	37	10	94688096	94688096	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169487795	169487795	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FADD	8772	broad.mit.edu	37	11	70052155	70052155	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM198B	51313	broad.mit.edu	37	4	159091677	159091677	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34961712	34961712	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM59A	64762	broad.mit.edu	37	18	29973143	29973143	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM60A	58516	broad.mit.edu	37	12	31435657	31435657	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	11991570	11991570	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12346066	12346066	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10067977	10067977	+	5'Flank	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCI	55215	broad.mit.edu	37	15	89826497	89826497	+	Intron	SNP	G	A	A	rs142941067	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163030363	163030363	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92430609	92430609	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8148097	8148097	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW8	26259	broad.mit.edu	37	12	117365997	117365997	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157773808	157773808	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FFAR3	2865	broad.mit.edu	37	19	35850556	35850556	+	Missense_Mutation	SNP	C	A	A	rs148946992		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14964666	14964666	+	Silent	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL5	9457	broad.mit.edu	37	6	97053770	97053770	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD1	29109	broad.mit.edu	37	16	67265199	67265199	+	Silent	SNP	C	T	T	rs143498229		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34289391	34289391	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIGN	55137	broad.mit.edu	37	2	164469893	164469893	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLII	2314	broad.mit.edu	37	17	18158065	18158065	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ12825	440101	broad.mit.edu	37	12	54500599	54500599	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ22536	401237	broad.mit.edu	37	6	22176447	22176447	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ25363	401082	broad.mit.edu	37	3	109182172	109182172	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43950	347127	broad.mit.edu	37	9	84529205	84529205	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128477515	128477515	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO4	2329	broad.mit.edu	37	1	171308423	171308423	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNTB	2342	broad.mit.edu	37	14	65417160	65417160	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOSL2	2355	broad.mit.edu	37	2	28635045	28635045	+	Silent	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXM1	2305	broad.mit.edu	37	12	2968006	2968006	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44975097	44975098	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44975184	44975184	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUS	2521	broad.mit.edu	37	16	31199708	31199708	+	Intron	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT9	10690	broad.mit.edu	37	6	96651197	96651197	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXN	2395	broad.mit.edu	37	9	71661353	71661353	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD3	7976	broad.mit.edu	37	8	28420374	28420374	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G3BP1	10146	broad.mit.edu	37	5	151183402	151183402	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G6PC2	57818	broad.mit.edu	37	2	169763321	169763321	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27222232	27222232	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	154997023	154997023	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16237376	16237376	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L3	283431	broad.mit.edu	37	12	101011511	101011512	+	Intron	INS	-	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89658674	89658674	+	Missense_Mutation	SNP	C	G	G	rs150777601		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCC2	9648	broad.mit.edu	37	2	109085455	109085455	+	Missense_Mutation	SNP	A	G	G	rs142334581	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120578600	120578600	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GC	2638	broad.mit.edu	37	4	72623860	72623860	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPR	2696	broad.mit.edu	37	19	46180810	46180810	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA8	2703	broad.mit.edu	37	1	147380507	147380507	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLG1	2734	broad.mit.edu	37	16	74542869	74542869	+	Intron	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42219507	42219507	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151239241	151239241	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA2	2742	broad.mit.edu	37	X	14625189	14625189	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA2	2742	broad.mit.edu	37	X	14675736	14675736	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL1	92292	broad.mit.edu	37	11	58722338	58722338	+	Silent	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167059522	167059522	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH1	55094	broad.mit.edu	37	19	33587217	33587217	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH1	55094	broad.mit.edu	37	19	33620948	33620948	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPHN	10243	broad.mit.edu	37	14	67646332	67646332	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR119	139760	broad.mit.edu	37	X	129519537	129519537	+	5'Flank	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158257526	158257527	+	Splice_Site	DNP	CA	AT	AT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120685307	120685307	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104433196	104433196	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34029580	34029580	+	Intron	SNP	G	A	A	rs148995261	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRPEL2	134266	broad.mit.edu	37	5	148727818	148727818	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA1	2938	broad.mit.edu	37	6	52671555	52671555	+	5'Flank	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTSE1	51512	broad.mit.edu	37	22	46719141	46719141	+	Missense_Mutation	SNP	C	T	T	rs145754460	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106698651	106698651	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	145041810	145041810	+	Intron	DEL	A	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMH	2999	broad.mit.edu	37	14	25077035	25077035	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAO2	51179	broad.mit.edu	37	1	119927521	119927521	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBD	3045	broad.mit.edu	37	11	5254298	5254298	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCK	3055	broad.mit.edu	37	20	30662513	30662513	+	Silent	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC5	10014	broad.mit.edu	37	17	42156290	42156290	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKDC1	80201	broad.mit.edu	37	10	71008190	71008190	+	Missense_Mutation	SNP	C	T	T	rs148832840	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186045751	186045751	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186072648	186072648	+	Missense_Mutation	SNP	G	A	A	rs140493567	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPC	3183	broad.mit.edu	37	14	21679295	21679295	+	3'UTR	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPU	3192	broad.mit.edu	37	1	245025891	245025891	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA2	3199	broad.mit.edu	37	7	27140790	27140790	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA3	3200	broad.mit.edu	37	7	27149733	27149734	+	Splice_Site	DNP	CC	AA	AA			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD12	3238	broad.mit.edu	37	2	176964979	176964979	+	Silent	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS4	89781	broad.mit.edu	37	22	26859981	26859982	+	Missense_Mutation	DNP	CG	AA	AA	rs116241923		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS6	79803	broad.mit.edu	37	10	103827022	103827022	+	Silent	SNP	A	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST3	266722	broad.mit.edu	37	13	97357048	97357048	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSN2	378465	broad.mit.edu	37	12	978064	978065	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA1L	3305	broad.mit.edu	37	6	31778903	31778903	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53629544	53629544	+	Silent	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFFO1	25900	broad.mit.edu	37	12	6659777	6659777	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI16	3428	broad.mit.edu	37	1	159023556	159023556	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99440124	99440124	+	Missense_Mutation	SNP	C	G	G	rs149559330		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47121281	47121281	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	101017060	101017060	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143045636	143045636	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5B	3633	broad.mit.edu	37	1	38341323	38341323	+	Silent	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15222402	15222402	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPCEF1	26034	broad.mit.edu	37	6	154488990	154488990	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCE	23288	broad.mit.edu	37	7	2624009	2624009	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC3	440073	broad.mit.edu	37	12	178465	178465	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX1	79192	broad.mit.edu	37	5	3599550	3599550	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISM2	145501	broad.mit.edu	37	14	77944577	77944577	+	Intron	SNP	T	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITFG2	55846	broad.mit.edu	37	12	2927446	2927446	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA3	3675	broad.mit.edu	37	17	48153085	48153085	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31418759	31418759	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31340629	31340629	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31383515	31383515	+	Intron	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147012124	147012124	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP3	282973	broad.mit.edu	37	10	133967360	133967360	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAZ	23254	broad.mit.edu	37	1	15099022	15099022	+	Intron	DEL	A	-	-	rs35991159		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	120178582	120178582	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNG1	3755	broad.mit.edu	37	20	49626891	49626891	+	5'UTR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211256134	211256134	+	Silent	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH2	3757	broad.mit.edu	37	7	150646098	150646098	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH4	23415	broad.mit.edu	37	17	40318173	40318173	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH4	23415	broad.mit.edu	37	17	40321497	40321497	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK18	338567	broad.mit.edu	37	10	118969197	118969197	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78674528	78674528	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196397241	196397241	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD3	51133	broad.mit.edu	37	1	215751283	215751283	+	Intron	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137756274	137756274	+	Intron	DEL	G	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10602596	10602596	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0802	23255	broad.mit.edu	37	18	8798155	8798155	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118223759	118223760	+	Intron	DNP	CC	AA	AA			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118250614	118250614	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324L	222223	broad.mit.edu	37	7	86554857	86554857	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1407	57577	broad.mit.edu	37	3	113697048	113697048	+	Missense_Mutation	SNP	G	A	A	rs145062166	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1539	80256	broad.mit.edu	37	9	35107405	35107405	+	Silent	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1919	91749	broad.mit.edu	37	6	111583510	111583510	+	Silent	SNP	C	T	T	rs140746881	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73965459	73965459	+	Silent	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF7	374654	broad.mit.edu	37	15	90188282	90188282	+	Missense_Mutation	SNP	C	G	G	rs138021610		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL1	3802	broad.mit.edu	37	19	55285230	55285230	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36349405	36349405	+	Missense_Mutation	SNP	T	A	A	rs117351170	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70314562	70314562	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241712220	241712220	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152731989	152731990	+	Intron	DNP	CC	AA	AA			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6B	3854	broad.mit.edu	37	12	52841155	52841155	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT7	3855	broad.mit.edu	37	12	52639315	52639315	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT8	3856	broad.mit.edu	37	12	53293728	53293728	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR1	8844	broad.mit.edu	37	17	25919379	25919379	+	Intron	SNP	T	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7015845	7015845	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129609021	129609021	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAS1L	81887	broad.mit.edu	37	X	64751152	64751152	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS2	29956	broad.mit.edu	37	1	150941018	150941018	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71946972	71946972	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFP	10186	broad.mit.edu	37	13	40175360	40175360	+	5'UTR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIM2	3982	broad.mit.edu	37	19	51890651	51890651	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD2	92255	broad.mit.edu	37	5	36105339	36105339	+	Intron	DEL	C	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMLN	89782	broad.mit.edu	37	3	197712706	197712706	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45604891	45604891	+	5'Flank	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC388692	388692	broad.mit.edu	37	1	149288546	149288547	+	RNA	DNP	GG	TT	TT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC402644	402644	broad.mit.edu	37	7	28319193	28319193	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91808953	91808953	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC93432	93432	broad.mit.edu	37	7	141816752	141816752	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOXHD1	125336	broad.mit.edu	37	18	44137381	44137381	+	Silent	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOXL3	84695	broad.mit.edu	37	2	74762634	74762634	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160898350	160898350	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160999577	160999577	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40361177	40361177	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG1	26018	broad.mit.edu	37	3	66436685	66436685	+	Silent	SNP	G	T	T	rs149185220	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141250324	141250324	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141816380	141816380	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170060849	170060849	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP8	7804	broad.mit.edu	37	1	53736899	53736900	+	Missense_Mutation	DNP	CG	AA	AA	rs146486060		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM2	26045	broad.mit.edu	37	5	138209593	138209593	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM2	26045	broad.mit.edu	37	5	138209614	138209614	+	Silent	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB2	4113	broad.mit.edu	37	X	30236757	30236757	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140991501	140991501	+	5'Flank	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAOA	4128	broad.mit.edu	37	X	43571958	43571958	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K11	4296	broad.mit.edu	37	11	65374054	65374054	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K4	4216	broad.mit.edu	37	6	161470818	161470818	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK14	1432	broad.mit.edu	37	6	36050416	36050416	+	Intron	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPRE2	10982	broad.mit.edu	37	18	32682116	32682116	+	Silent	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165118930	165118930	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH6	10299	broad.mit.edu	37	5	10425417	10425417	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH7	64844	broad.mit.edu	37	2	160604494	160604494	+	Silent	SNP	A	G	G	rs144441888	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119700033	119700033	+	Intron	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD5	55777	broad.mit.edu	37	2	149247917	149247917	+	Silent	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM2	4171	broad.mit.edu	37	3	127339645	127339645	+	Silent	SNP	C	T	T	rs143447982	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN1	57192	broad.mit.edu	37	19	7591268	7591268	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDFI	4188	broad.mit.edu	37	6	41606654	41606654	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116409904	116409904	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFRP	83552	broad.mit.edu	37	11	119210102	119210102	+	3'UTR	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD2A	84879	broad.mit.edu	37	1	40425357	40425358	+	Intron	INS	-	T	T	rs149518371		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141736753	141736753	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIAT	440823	broad.mit.edu	37	22	27073733	27073733	+	Intron	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR622	693207	broad.mit.edu	37	13	90882809	90882809	+	5'Flank	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR622	693207	broad.mit.edu	37	13	90882825	90882825	+	5'Flank	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129910277	129910277	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129911753	129911753	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP19	4327	broad.mit.edu	37	12	56231768	56231768	+	Missense_Mutation	SNP	A	G	G	rs141023737		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS3	27304	broad.mit.edu	37	20	49576528	49576528	+	Silent	SNP	G	A	A	rs138841225	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS3	27304	broad.mit.edu	37	20	49576693	49576693	+	Silent	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC4	79710	broad.mit.edu	37	X	106144914	106144914	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRAS	22808	broad.mit.edu	37	3	138119381	138119381	+	Silent	SNP	G	A	A	rs149904534	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A4A	51338	broad.mit.edu	37	11	60075691	60075691	+	3'UTR	SNP	A	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A8B	83661	broad.mit.edu	37	11	60471565	60471565	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A8B	83661	broad.mit.edu	37	11	60482421	60482421	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRA	4482	broad.mit.edu	37	8	10281858	10281858	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTL5	9633	broad.mit.edu	37	11	68506246	68506246	+	Missense_Mutation	SNP	G	C	C	rs145548910	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63551365	63551365	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63568698	63568698	+	Intron	SNP	T	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11307989	11307989	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTRR	4552	broad.mit.edu	37	5	7869175	7869175	+	5'Flank	SNP	A	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTRR	4552	broad.mit.edu	37	5	7869177	7869177	+	5'Flank	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29600343	29600343	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29881912	29881913	+	Intron	DNP	CC	AA	AA			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MURC	347273	broad.mit.edu	37	9	103348495	103348495	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPHL	343263	broad.mit.edu	37	1	109839045	109839045	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81102560	81102560	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10428863	10428863	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10366661	10366661	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23874812	23874812	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27409244	27409244	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26239765	26239765	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1B	4430	broad.mit.edu	37	2	192173215	192173215	+	Intron	SNP	T	C	C	rs114878057	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	31107615	31107615	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101735074	101735074	+	Intron	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145239554	145239554	+	Intron	SNP	A	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	146419833	146419833	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144168520	144168520	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144168526	144168526	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144193505	144193505	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113085193	113085193	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22841152	22841152	+	Intron	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPH	23397	broad.mit.edu	37	2	97009061	97009062	+	Intron	DNP	GG	TT	TT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54902457	54902457	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA2	10499	broad.mit.edu	37	8	71075093	71075093	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA3	8202	broad.mit.edu	37	20	46264353	46264353	+	Missense_Mutation	SNP	C	A	A	rs140702870	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124886969	124886969	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00182	100302692	broad.mit.edu	37	X	73406668	73406668	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG2	57447	broad.mit.edu	37	14	21492345	21492345	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21108438	21108438	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21581904	21581904	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHS	4810	broad.mit.edu	37	X	17745613	17745613	+	Silent	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKRF	55922	broad.mit.edu	37	X	118724465	118724465	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKRF	55922	broad.mit.edu	37	X	118725118	118725118	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56538701	56538701	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOMO1	23420	broad.mit.edu	37	16	14958479	14958479	+	Missense_Mutation	SNP	C	T	T	rs149399039	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1	4864	broad.mit.edu	37	18	21141409	21141409	+	Silent	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC2	10577	broad.mit.edu	37	14	74947404	74947404	+	Splice_Site	SNP	C	T	T	rs140130028	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPTXR	23467	broad.mit.edu	37	22	39222545	39222545	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRBP2	340371	broad.mit.edu	37	8	144920987	144920987	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32011637	32011637	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32585408	32585408	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50657472	50657473	+	Intron	INS	-	A	A	rs140388834	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMCE4A	54780	broad.mit.edu	37	10	123724810	123724810	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131459579	131459579	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131781323	131781323	+	5'UTR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131865427	131865427	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156834171	156834171	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP88	4927	broad.mit.edu	37	17	5319963	5319963	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS3	4940	broad.mit.edu	37	12	113407867	113407867	+	3'UTR	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228407094	228407094	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODC1	4953	broad.mit.edu	37	2	10584122	10584122	+	Intron	SNP	A	G	G	rs28362399	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123556575	123556575	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123805724	123805725	+	Intron	DNP	TC	CT	CT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123839100	123839100	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGT	8473	broad.mit.edu	37	X	70767661	70767661	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247920989	247920989	+	Silent	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1L4	254973	broad.mit.edu	37	9	125486939	125486939	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1S2	219958	broad.mit.edu	37	11	57971642	57971642	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B2	81697	broad.mit.edu	37	6	27880161	27880161	+	5'Flank	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR3A2	4995	broad.mit.edu	37	17	3181724	3181724	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR3A3	8392	broad.mit.edu	37	17	3324477	3324477	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C13	283092	broad.mit.edu	37	11	49974626	49974626	+	Missense_Mutation	SNP	G	A	A	rs150606357	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4L1	122742	broad.mit.edu	37	14	20528951	20528951	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51A7	119687	broad.mit.edu	37	11	4928962	4928962	+	Silent	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51D1	390038	broad.mit.edu	37	11	4661750	4661750	+	Missense_Mutation	SNP	C	T	T	rs138670452		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51E1	143503	broad.mit.edu	37	11	4674587	4674587	+	Silent	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51V1	283111	broad.mit.edu	37	11	5221254	5221254	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M3	219482	broad.mit.edu	37	11	56237803	56237803	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D2	283160	broad.mit.edu	37	11	124189594	124189594	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9A4	130075	broad.mit.edu	37	7	141618813	141618813	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOR	56914	broad.mit.edu	37	20	16729156	16729156	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOS	150677	broad.mit.edu	37	2	241078680	241078680	+	Silent	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY4	5030	broad.mit.edu	37	X	69479509	69479509	+	5'UTR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1P2	728773	broad.mit.edu	37	2	147345616	147345616	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC4	8761	broad.mit.edu	37	1	40027512	40027512	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX6	5080	broad.mit.edu	37	11	31822172	31822172	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56106161	56106161	+	Silent	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	30880151	30880151	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA4	56144	broad.mit.edu	37	5	140188732	140188732	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140605042	140605042	+	Silent	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB18	54660	broad.mit.edu	37	5	140616239	140616239	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB9	56127	broad.mit.edu	37	5	140568931	140568931	+	Missense_Mutation	SNP	G	T	T	rs17844543		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140718666	140718666	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140773068	140773068	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233150374	233150374	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCL3	79031	broad.mit.edu	37	2	101186012	101186012	+	Intron	SNP	A	G	G	rs74933860	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20769151	20769151	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20769264	20769264	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144979865	144979865	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145019127	145019127	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149301211	149301211	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PELI2	57161	broad.mit.edu	37	14	56763840	56763840	+	Missense_Mutation	SNP	G	A	A	rs140174739	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB3	5209	broad.mit.edu	37	10	6268301	6268301	+	Silent	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGR	5241	broad.mit.edu	37	11	100920650	100920653	+	Intron	DEL	ACTC	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF21B	112885	broad.mit.edu	37	22	45278884	45278884	+	3'UTR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHGDH	26227	broad.mit.edu	37	1	120279825	120279825	+	Missense_Mutation	SNP	G	A	A	rs147049991		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4K2B	55300	broad.mit.edu	37	4	25256645	25256645	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2L1	9033	broad.mit.edu	37	10	102054707	102054707	+	Silent	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110457470	110457470	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP1	5317	broad.mit.edu	37	1	201285876	201285876	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18854458	18854458	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLP1	5354	broad.mit.edu	37	X	103043497	103043497	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72184620	72184620	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIP	5406	broad.mit.edu	37	10	118307843	118307843	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA6	10908	broad.mit.edu	37	19	7621333	7621333	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLN	353497	broad.mit.edu	37	4	2160808	2160808	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU3F3	5455	broad.mit.edu	37	2	105472929	105472929	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU3F4	5456	broad.mit.edu	37	X	82763391	82763391	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU5F1B	5462	broad.mit.edu	37	8	128429051	128429051	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA3	8541	broad.mit.edu	37	19	49641551	49641551	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIC	5480	broad.mit.edu	37	5	122359589	122359589	+	Missense_Mutation	SNP	A	G	G	rs147078691	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1H	57460	broad.mit.edu	37	12	63087827	63087827	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1N	147699	broad.mit.edu	37	19	46002480	46002480	+	Silent	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146007885	146007886	+	Intron	DNP	AG	TT	TT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3B	28227	broad.mit.edu	37	X	322287	322287	+	Silent	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R4	57718	broad.mit.edu	37	14	94731783	94731783	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB1	5542	broad.mit.edu	37	12	11508046	11508046	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM11	56981	broad.mit.edu	37	11	45117276	45117276	+	Intron	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70978583	70978583	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24180752	24180752	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54385787	54385787	+	Silent	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROSC	11212	broad.mit.edu	37	8	37635546	37635546	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPH2	5961	broad.mit.edu	37	6	42689526	42689526	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS16	10279	broad.mit.edu	37	6	27220550	27220550	+	Intron	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43372657	43372658	+	Intron	DNP	GG	TT	TT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43698423	43698423	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43770526	43770526	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70963665	70963665	+	Missense_Mutation	SNP	G	T	T	rs139698072	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198677229	198677229	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8492774	8492774	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	7888171	7888171	+	Silent	SNP	A	G	G	rs149248930		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157691585	157691585	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUS7	54517	broad.mit.edu	37	7	105142947	105142947	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52321726	52321726	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158913621	158913621	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDM2	22864	broad.mit.edu	37	12	57648586	57648586	+	Silent	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB40AL	282808	broad.mit.edu	37	X	102192374	102192374	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB40AL	282808	broad.mit.edu	37	X	102192870	102192870	+	Silent	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1P	83956	broad.mit.edu	37	12	45458584	45458584	+	RNA	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARA	5914	broad.mit.edu	37	17	38508135	38508135	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114786894	114786894	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	49030607	49030607	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103162400	103162400	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	106977043	106977043	+	5'UTR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGAG1	57529	broad.mit.edu	37	X	109697918	109697918	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241469867	241469867	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	73043628	73043628	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40503566	40503566	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLIM	51132	broad.mit.edu	37	X	73812627	73812627	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLN2	6019	broad.mit.edu	37	9	5300143	5300143	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF170	81790	broad.mit.edu	37	8	42729062	42729062	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF19B	127544	broad.mit.edu	37	1	33415229	33415229	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117632129	117632129	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10488499	10488499	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS3	6188	broad.mit.edu	37	11	75112574	75112574	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78854115	78854115	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7231500	7231500	+	Silent	SNP	C	T	T	rs137943791	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSU1	6251	broad.mit.edu	37	10	16806279	16806279	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237753238	237753238	+	Silent	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237961378	237961378	+	Silent	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34049897	34049897	+	Intron	SNP	A	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134991604	134991604	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51175927	51175927	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166142436	166142436	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCP2	6342	broad.mit.edu	37	1	53446052	53446052	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCPEP1	59342	broad.mit.edu	37	17	55078369	55078369	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE2	57758	broad.mit.edu	37	11	9096220	9096220	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCYL2	55681	broad.mit.edu	37	12	100709316	100709316	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SECISBP2	79048	broad.mit.edu	37	9	91965658	91965658	+	Silent	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT9	10801	broad.mit.edu	37	17	75398286	75398286	+	Silent	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERAC1	84947	broad.mit.edu	37	6	158549329	158549329	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB5	5268	broad.mit.edu	37	18	61160268	61160268	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD1A	9739	broad.mit.edu	37	16	30975313	30975313	+	Intron	DEL	A	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B3	23450	broad.mit.edu	37	16	70562833	70562833	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF4	57794	broad.mit.edu	37	19	19390997	19390999	+	In_Frame_Del	DEL	CTG	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7262396	7262396	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGMS1	259230	broad.mit.edu	37	10	52371082	52371082	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2B1	25970	broad.mit.edu	37	16	28884763	28884763	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BGRL2	83699	broad.mit.edu	37	6	80355587	80355587	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3RF2	153769	broad.mit.edu	37	5	145428763	145428763	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA6	388336	broad.mit.edu	37	17	11223986	11223992	+	Intron	DEL	AAGAGAG	-	-	rs79695861		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC10	89790	broad.mit.edu	37	19	51918955	51918955	+	Intron	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100838958	100838959	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164781289	164781289	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP1	8631	broad.mit.edu	37	17	46262017	46262017	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A1	6568	broad.mit.edu	37	6	25813486	25813486	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A13	10165	broad.mit.edu	37	7	95819103	95819103	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A9	115019	broad.mit.edu	37	1	205909565	205909566	+	Intron	INS	-	A	A	rs138178577	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A4	7782	broad.mit.edu	37	15	45814446	45814446	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A5	92745	broad.mit.edu	37	X	48319079	48319079	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18270455	18270455	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC3A1	6519	broad.mit.edu	37	2	44507912	44507912	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A1	6523	broad.mit.edu	37	22	32473201	32473201	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A8	23315	broad.mit.edu	37	20	48494620	48494620	+	Intron	SNP	T	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20874977	20874977	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88330261	88330261	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2161702	2161702	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127729487	127729487	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP27	11017	broad.mit.edu	37	2	70124411	70124411	+	Intron	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51617216	51617216	+	Silent	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS1	10580	broad.mit.edu	37	10	97078177	97078177	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106865069	106865069	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106938000	106938000	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231174515	231174515	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN2	494119	broad.mit.edu	37	X	142795335	142795335	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35806912	35806912	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG11	80208	broad.mit.edu	37	15	44914426	44914426	+	Silent	SNP	T	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPSB1	80176	broad.mit.edu	37	1	9390617	9390617	+	Intron	DEL	G	-	-	rs34817952		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158585251	158585251	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158615234	158615234	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPX2	27286	broad.mit.edu	37	X	99911873	99911873	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2815038	2815038	+	Silent	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRR	63826	broad.mit.edu	37	17	2221101	2221101	+	Intron	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSFA2	6744	broad.mit.edu	37	2	182781062	182781062	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD13	90627	broad.mit.edu	37	13	33680999	33680999	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK10	6793	broad.mit.edu	37	5	171481638	171481638	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120998717	120998717	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD5	26032	broad.mit.edu	37	3	33194834	33194834	+	Silent	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152751709	152751709	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152949425	152949425	+	Silent	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR3	6870	broad.mit.edu	37	4	104510918	104510918	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAP2	6891	broad.mit.edu	37	6	32797253	32797253	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R16	50833	broad.mit.edu	37	7	122635601	122635601	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D21	161514	broad.mit.edu	37	15	74178573	74178573	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX4	9496	broad.mit.edu	37	17	59544830	59544830	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEAL2	140597	broad.mit.edu	37	X	101381788	101381789	+	5'UTR	DNP	AG	TT	TT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	52928766	52928766	+	Splice_Site	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDP1	55775	broad.mit.edu	37	14	90450944	90450944	+	Silent	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179609087	179609087	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD9	122402	broad.mit.edu	37	14	104441751	104441751	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEK	7010	broad.mit.edu	37	9	27203075	27203075	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX101	83639	broad.mit.edu	37	19	43920394	43920394	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX13A	56157	broad.mit.edu	37	X	104465043	104465043	+	Silent	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30700988	30700988	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50803999	50803999	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP1	7027	broad.mit.edu	37	13	114286076	114286076	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134034483	134034483	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169640650	169640650	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128134734	128134734	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRAP3	9967	broad.mit.edu	37	1	36748273	36748273	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRAP3	9967	broad.mit.edu	37	1	36752695	36752695	+	Silent	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2594031	2594031	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC5	79838	broad.mit.edu	37	16	19452068	19452068	+	Silent	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM168	64418	broad.mit.edu	37	7	112423881	112423881	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM64	169200	broad.mit.edu	37	8	91637856	91637856	+	3'UTR	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM71	137835	broad.mit.edu	37	8	133726341	133726341	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMOD4	29765	broad.mit.edu	37	1	151145935	151145935	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29908755	29908756	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29908795	29908795	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175091726	175091726	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175092665	175092665	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175375319	175375319	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175630269	175630269	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42680197	42680197	+	Intron	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX	9760	broad.mit.edu	37	8	60031403	60031403	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113705575	113705575	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72350261	72350261	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPPP	11076	broad.mit.edu	37	5	665282	665282	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10916509	10916509	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10934930	10934930	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM3	10612	broad.mit.edu	37	11	6479487	6479487	+	Silent	SNP	T	C	C	rs41275192	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM5	85363	broad.mit.edu	37	11	5841450	5841450	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111096878	111096878	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111195610	111195610	+	Silent	SNP	C	T	T	rs150908311	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV2	51393	broad.mit.edu	37	17	16321143	16321143	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98519392	98519392	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSG1	643432	broad.mit.edu	37	6	94414688	94414688	+	5'Flank	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51869911	51869911	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31781351	31781351	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSIX	9383	broad.mit.edu	37	X	73043550	73043550	+	RNA	SNP	T	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN2	10100	broad.mit.edu	37	1	115593215	115593215	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSTD2	158427	broad.mit.edu	37	9	100365004	100365004	+	Missense_Mutation	SNP	G	C	C	rs150422288	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC19	54902	broad.mit.edu	37	17	15930734	15930734	+	Silent	SNP	A	G	G	rs77955179	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80751919	80751919	+	Nonstop_Mutation	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179406246	179406246	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179474723	179474723	+	Intron	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179481203	179481203	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179490092	179490092	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179543627	179543627	+	Intron	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179659294	179659294	+	Intron	SNP	C	T	T	rs72647847		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNIP	10628	broad.mit.edu	37	1	145440739	145440739	+	Silent	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYROBP	7305	broad.mit.edu	37	19	36399150	36399150	+	5'UTR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UACA	55075	broad.mit.edu	37	15	70960708	70960708	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP2L	9898	broad.mit.edu	37	1	154241156	154241156	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3A	53347	broad.mit.edu	37	21	43846996	43846996	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2C	11065	broad.mit.edu	37	20	44444099	44444099	+	Intron	SNP	G	C	C	rs78668952	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	157000045	157000045	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT1	56886	broad.mit.edu	37	2	128870689	128870689	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT1	56886	broad.mit.edu	37	2	128947302	128947302	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70360774	70360774	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43524055	43524055	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96171636	96171636	+	Splice_Site	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRB	7381	broad.mit.edu	37	8	97244118	97244118	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP39	10713	broad.mit.edu	37	2	85848669	85848670	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107299936	107299936	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	109183639	109183639	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	109355966	109355966	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	15029148	15029148	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30106470	30106470	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30978196	30978196	+	IGR	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42530677	42530678	+	IGR	INS	-	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	59101168	59101168	+	IGR	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	80378793	80378793	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	96642702	96642702	+	IGR	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	103499691	103499691	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	115680153	115680153	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127117677	127117677	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127371897	127371897	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15018422	15018422	+	IGR	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15659945	15659945	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55782630	55782630	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56984677	56984677	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58428893	58428893	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	69552194	69552194	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	82400694	82400694	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89372493	89372493	+	IGR	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	107642278	107642278	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34462810	34462810	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43333324	43333324	+	IGR	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	45366700	45366700	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	50434099	50434099	+	IGR	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	76358682	76358682	+	IGR	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88177212	88177212	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	90313334	90313334	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98755133	98755133	+	IGR	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	107264450	107264450	+	IGR	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22421450	22421450	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	27914765	27914765	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	36736444	36736444	+	IGR	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	40515547	40515548	+	IGR	DNP	CC	AA	AA			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	77155558	77155558	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90015170	90015170	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91924578	91924578	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	26450317	26450317	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	30484283	30484283	+	IGR	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43769612	43769612	+	IGR	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45329697	45329697	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82128788	82128788	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	86538322	86538322	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95100678	95100678	+	IGR	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20444870	20444871	+	IGR	DNP	CC	AA	AA			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21119178	21119178	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25039153	25039153	+	IGR	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	27890572	27890572	+	IGR	DEL	T	-	-	rs5811500		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30433119	30433119	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	33529218	33529218	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60164495	60164495	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	70847013	70847013	+	IGR	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84773650	84773651	+	IGR	DEL	TG	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32621215	32621215	+	IGR	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32621217	32621217	+	IGR	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32847465	32847465	+	IGR	SNP	G	T	T	rs112990349	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32859244	32859244	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33060410	33060410	+	IGR	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33424885	33424885	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34510030	34510030	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73476699	73476699	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22327224	22327224	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	35358660	35358660	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39399011	39399011	+	IGR	DEL	G	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	60721314	60721315	+	IGR	DNP	CC	AA	AA			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	65945426	65945426	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	75147669	75147669	+	IGR	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	76396814	76396814	+	IGR	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23040623	23040623	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35950296	35950296	+	IGR	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	42665791	42665791	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51694254	51694254	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13219358	13219358	+	IGR	DEL	C	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143423476	143423476	+	IGR	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149037601	149037601	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149047054	149047054	+	IGR	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149099761	149099761	+	IGR	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149146801	149146801	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	154351070	154351070	+	IGR	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	170761450	170761451	+	IGR	DNP	GG	TT	TT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	171652354	171652354	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	172881877	172881877	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	181105863	181105863	+	IGR	SNP	C	G	G	rs111250173		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	18346032	18346032	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219823627	219823627	+	IGR	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	237150712	237150712	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247393537	247393537	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30066802	30066802	+	IGR	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	37231558	37231558	+	IGR	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	56532947	56532947	+	IGR	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	83604392	83604392	+	IGR	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11748584	11748584	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29592607	29592607	+	IGR	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	37882347	37882347	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	37883277	37883277	+	IGR	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38225162	38225162	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53922016	53922016	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	56421547	56421548	+	IGR	DNP	TC	CT	CT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10886503	10886503	+	IGR	SNP	A	T	T	rs76732862	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11114853	11114853	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11129308	11129308	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181072	11181072	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	16004327	16004327	+	IGR	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31869121	31869121	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	33212956	33212956	+	IGR	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	42944915	42944915	+	IGR	DEL	T	-	-	rs113971009		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9473538	9473538	+	IGR	DEL	G	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9590218	9590218	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9655201	9655201	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16352147	16352147	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16651083	16651083	+	IGR	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	25696795	25696795	+	IGR	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	30939525	30939525	+	IGR	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	102883191	102883191	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	113611158	113611158	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132144724	132144724	+	IGR	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	138805361	138805361	+	IGR	SNP	A	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	158199627	158199627	+	IGR	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17465560	17465560	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	23528860	23528860	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	237763977	237763977	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	239849490	239849490	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	26217733	26217733	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34064900	34064900	+	IGR	SNP	C	A	A	rs79200953		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	79280103	79280103	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	84254393	84254393	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800203	91800203	+	IGR	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	11933160	11933160	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	12299262	12299262	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	127195430	127195430	+	IGR	SNP	C	T	T	rs78172549	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148961350	148961350	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	16735393	16735393	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	191619236	191619236	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75378546	75378546	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98379004	98379004	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	121012228	121012228	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	130058991	130058991	+	IGR	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13282157	13282157	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17325859	17325859	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190652938	190652938	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	26035841	26035841	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	45737304	45737304	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49513957	49513957	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69991808	69991808	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	88594028	88594028	+	IGR	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	99169769	99169769	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	116387894	116387894	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12156759	12156759	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165210135	165210135	+	IGR	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	169568735	169568735	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	173940905	173940905	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174638026	174638026	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	1818395	1818397	+	IGR	DEL	CTT	-	-	rs146348199		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23304778	23304778	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23304894	23304894	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30870608	30870608	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	57457636	57457636	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	67163798	67163798	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	86331440	86331440	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112677881	112677881	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	33567800	33567801	+	IGR	INS	-	T	T	rs138916194		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	43262343	43262343	+	IGR	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48460578	48460578	+	IGR	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	99254928	99254928	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145281782	145281782	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31026887	31026887	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	312796	312796	+	IGR	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930845	53930845	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54695478	54695479	+	IGR	INS	-	C	C	rs142611747	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55040707	55040708	+	IGR	INS	-	TTTT	TTTT	rs146404248	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55076115	55076116	+	IGR	INS	-	GA	GA	rs139661341	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55512236	55512237	+	IGR	INS	-	T	T	rs139959522	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56741119	56741119	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216893	57216893	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217022	57217022	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61829930	61829930	+	IGR	SNP	C	A	A	rs79920359		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63034008	63034008	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88194530	88194530	+	IGR	SNP	G	T	T	rs117931259	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	105878956	105878956	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	1236831	1236831	+	IGR	SNP	T	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132820720	132820720	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20313295	20313295	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20326078	20326078	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20514734	20514734	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20514736	20514736	+	IGR	SNP	T	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47013509	47013509	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47020929	47020929	+	IGR	SNP	A	C	C	rs117424962	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47343493	47343493	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	66846067	66846067	+	IGR	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	80484171	80484171	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	80580532	80580532	+	IGR	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	82814188	82814189	+	IGR	DNP	GG	TT	TT			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	96416144	96416144	+	IGR	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	107485000	107485000	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	110398519	110398519	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68405338	68405338	+	IGR	SNP	A	G	G	rs62544775	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68426353	68426353	+	IGR	DEL	G	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	83032476	83032476	+	IGR	SNP	T	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84775954	84775954	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100057244	100057244	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106819761	106819761	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115239639	115239639	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120336871	120336871	+	IGR	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120482199	120482199	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127575662	127575662	+	IGR	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	128062436	128062436	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134328544	134328544	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134748871	134748871	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	137329683	137329683	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147280138	147280138	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	30115036	30115036	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	36980639	36980639	+	IGR	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	39650979	39650979	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	43889396	43889396	+	IGR	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52862891	52862891	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	61999537	61999537	+	IGR	SNP	A	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65660153	65660153	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74904703	74904703	+	IGR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79816174	79816174	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	84681231	84681231	+	IGR	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13466356	13466356	+	IGR	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59001532	59001532	+	IGR	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59015896	59015896	+	IGR	SNP	G	C	C	rs75099165		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV1	7409	broad.mit.edu	37	19	6833876	6833876	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108412390	108412390	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177608492	177608492	+	Silent	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177608587	177608587	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN1	8876	broad.mit.edu	37	6	133032955	133032955	+	Silent	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62276023	62276023	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS45	11311	broad.mit.edu	37	1	150049082	150049082	+	Intron	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG4	11326	broad.mit.edu	37	X	65253413	65253413	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6121126	6121126	+	Intron	SNP	G	A	A	rs148695066	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71036410	71036410	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR28	135886	broad.mit.edu	37	7	73279405	73279405	+	Missense_Mutation	SNP	A	G	G	rs145787430	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDHD1	11169	broad.mit.edu	37	14	55434069	55434069	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177049933	177049933	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR31	114987	broad.mit.edu	37	9	116091203	116091203	+	Missense_Mutation	SNP	A	C	C	rs35305327	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WEE2	494551	broad.mit.edu	37	7	141408508	141408508	+	5'UTR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32413657	32413657	+	Intron	DEL	C	-	-			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31572756	31572756	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP1	165904	broad.mit.edu	37	3	39227957	39227957	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	10756253	10756253	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YTHDF2	51441	broad.mit.edu	37	1	29070254	29070254	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46554009	46554009	+	Silent	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H14	79882	broad.mit.edu	37	14	89029996	89029996	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111398833	111398833	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZHX3	23051	broad.mit.edu	37	20	39831710	39831710	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT5	55954	broad.mit.edu	37	22	30134464	30134464	+	Intron	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF16	7564	broad.mit.edu	37	8	146155946	146155946	+	3'UTR	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF16	7564	broad.mit.edu	37	8	146155978	146155978	+	3'UTR	SNP	G	A	A	rs3208	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF207	7756	broad.mit.edu	37	17	30677325	30677325	+	Silent	SNP	G	A	A	rs140451700	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF20	7568	broad.mit.edu	37	19	12243846	12243846	+	Silent	SNP	A	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF215	7762	broad.mit.edu	37	11	6964854	6964854	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF280A	129025	broad.mit.edu	37	22	22869426	22869426	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF280D	54816	broad.mit.edu	37	15	56958443	56958443	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57188282	57188282	+	Silent	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30934691	30934691	+	Silent	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31040367	31040367	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF570	148268	broad.mit.edu	37	19	37974825	37974825	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF585A	199704	broad.mit.edu	37	19	37643330	37643330	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF585A	199704	broad.mit.edu	37	19	37646803	37646803	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	62390	62390	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	85696	85696	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF599	148103	broad.mit.edu	37	19	35250996	35250996	+	Missense_Mutation	SNP	C	T	T	rs149040820	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF679	168417	broad.mit.edu	37	7	63726275	63726275	+	Silent	SNP	T	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63680318	63680318	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57769437	57769437	+	Silent	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5A	79149	broad.mit.edu	37	19	56758181	56758181	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	81471503	81471503	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30953333	30953333	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	24736210	24736210	+	RNA	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40959510	40959510	+	RNA	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54709810	54709810	+	5'Flank	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22392725	22392725	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20495302	20495302	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	21544181	21544181	+	Intron	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33013806	33013806	+	RNA	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34982138	34982138	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	35037500	35037500	+	5'Flank	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44085649	44085649	+	Intron	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	56064105	56064105	+	5'Flank	SNP	G	A	A	rs45611438	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28739721	28739721	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133070624	133070624	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89339775	89339775	+	RNA	SNP	G	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	134046326	134046326	+	Intron	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190857168	190857168	+	Intron	SNP	A	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	164028073	164028073	+	RNA	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7304382	7304382	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141942758	141942758	+	RNA	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142045380	142045380	+	Intron	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142326963	142326963	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66455685	66455685	+	Intron	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66455689	66455689	+	Intron	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	11533	11533	+	RNA	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	12991	12991	+	RNA	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	13641	13641	+	RNA	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	13684	13684	+	RNA	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	15005	15005	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	4360	4360	+	5'Flank	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	458	458	+	5'Flank	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	6320	6320	+	5'UTR	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	6717	6717	+	5'UTR	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	9084	9084	+	RNA	SNP	T	C	C			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	9300	9300	+	RNA	SNP	G	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
