Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCB11	8647	broad.mit.edu	37	2	169787280	169787280	+	Silent	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109665277	109665277	+	Silent	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD5	91452	broad.mit.edu	37	10	27486312	27486312	+	3'UTR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31344547	31344547	+	Intron	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACO1	48	broad.mit.edu	37	9	32434696	32434696	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACRBP	84519	broad.mit.edu	37	12	6754460	6754460	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106494317	106494317	+	RNA	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106518306	106518306	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106725792	106725792	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106805362	106805362	+	RNA	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106899557	106899557	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106926821	106926821	+	Intron	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77389870	77389870	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49023607	49023608	+	Intron	DEL	AG	-	-	rs144686908		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT	189	broad.mit.edu	37	2	241813334	241813334	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP4	8852	broad.mit.edu	37	X	49955866	49955866	+	Intron	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG13	79868	broad.mit.edu	37	X	110988105	110988105	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMMECR1	9949	broad.mit.edu	37	X	109444355	109444355	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKHD1	54882	broad.mit.edu	37	5	139852008	139852008	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	100042596	100042596	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO8	57719	broad.mit.edu	37	19	17438490	17438490	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANPEP	290	broad.mit.edu	37	15	90348600	90348600	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA4	307	broad.mit.edu	37	2	70031598	70031598	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB3	10307	broad.mit.edu	37	5	139941222	139941222	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP26	23092	broad.mit.edu	37	5	142541849	142541850	+	Intron	INS	-	ACAC	ACAC	rs140126135	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130199016	130199017	+	Intron	DEL	TG	-	-	rs140823879		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4B	51742	broad.mit.edu	37	1	235338529	235338529	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160097613	160097613	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160114740	160114740	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47548645	47548645	+	Missense_Mutation	SNP	G	C	C	rs139734817		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2C2	9914	broad.mit.edu	37	16	84476176	84476176	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9B	374868	broad.mit.edu	37	18	77097342	77097342	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT6	9331	broad.mit.edu	37	18	29246141	29246141	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS1	582	broad.mit.edu	37	11	66298585	66298585	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BFAR	51283	broad.mit.edu	37	16	14738555	14738555	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32673994	32673994	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf87	399947	broad.mit.edu	37	11	109294724	109294724	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf138	79609	broad.mit.edu	37	14	50582945	50582945	+	Intron	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf41	84529	broad.mit.edu	37	15	36911044	36911044	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf55	256646	broad.mit.edu	37	15	34647923	34647923	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf14	81626	broad.mit.edu	37	1	182920510	182920510	+	Silent	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75115078	75115078	+	Intron	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf59	113802	broad.mit.edu	37	1	109193697	109193697	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf92	149499	broad.mit.edu	37	1	156899299	156899299	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf196	149840	broad.mit.edu	37	20	5753463	5753463	+	Intron	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf62	375307	broad.mit.edu	37	2	219231792	219231792	+	Silent	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf65	130951	broad.mit.edu	37	2	74788360	74788365	+	Intron	DEL	AGGAGG	-	-			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf80	389073	broad.mit.edu	37	2	209036949	209036949	+	Intron	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf44	345222	broad.mit.edu	37	4	3254982	3254982	+	Silent	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40314311	40314311	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf53	286006	broad.mit.edu	37	7	112124917	112124917	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf106	414318	broad.mit.edu	37	9	132084838	132084838	+	3'UTR	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2757704	2757704	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54604068	54604068	+	Silent	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86063019	86063019	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMSAP1L1	23271	broad.mit.edu	37	1	200722836	200722836	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBX1	10951	broad.mit.edu	37	17	46152343	46152343	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179702494	179702494	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC50	152137	broad.mit.edu	37	3	191107310	191107310	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD34	947	broad.mit.edu	37	1	208072455	208072455	+	Missense_Mutation	SNP	C	T	T	rs146237257	byFrequency	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC73	79577	broad.mit.edu	37	1	193117052	193117052	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65005562	65005562	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83704557	83704557	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176015963	176015963	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM7	1087	broad.mit.edu	37	19	42187792	42187792	+	Silent	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196695702	196695702	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGGBP1	8545	broad.mit.edu	37	3	88144991	88144991	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD3	1107	broad.mit.edu	37	17	7803982	7803982	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD3	1107	broad.mit.edu	37	17	7804438	7804438	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21864052	21864052	+	Splice_Site	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST9	83539	broad.mit.edu	37	18	24532551	24532551	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21393226	21393226	+	Intron	SNP	A	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21627328	21627328	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT10	25904	broad.mit.edu	37	3	32778870	32778870	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76501344	76501344	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139882566	139882566	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48369122	48369122	+	Silent	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107911647	107911647	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPAMD8	27151	broad.mit.edu	37	19	17081702	17081703	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE5	57699	broad.mit.edu	37	6	36730131	36730131	+	Intron	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF3	51692	broad.mit.edu	37	2	9607821	9607821	+	Intron	DEL	T	-	-			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125673495	125673495	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPZ	8532	broad.mit.edu	37	4	8607717	8607717	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36665729	36665729	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113420536	113420536	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1G3	1456	broad.mit.edu	37	5	122941149	122941149	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK2A1	1457	broad.mit.edu	37	20	470561	470561	+	Intron	SNP	A	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRP1	1465	broad.mit.edu	37	1	201465415	201465415	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP24A1	1591	broad.mit.edu	37	20	52788041	52788041	+	Intron	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4B1	1580	broad.mit.edu	37	1	47283797	47283797	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4Z2P	163720	broad.mit.edu	37	1	47351078	47351078	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTSB	92521	broad.mit.edu	37	17	20210262	20210263	+	Intron	INS	-	AT	AT	rs151048199	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAK	26007	broad.mit.edu	37	11	61113297	61113297	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DARC	2532	broad.mit.edu	37	1	159174851	159174851	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST1	149095	broad.mit.edu	37	1	155006927	155006927	+	Silent	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX57	90957	broad.mit.edu	37	2	39088728	39088728	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP3	58512	broad.mit.edu	37	1	35370101	35370101	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11584180	11584180	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116538412	116538412	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100496609	100496609	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP10	11221	broad.mit.edu	37	1	221876030	221876030	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB5	374786	broad.mit.edu	37	17	28383151	28383151	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFL6	25975	broad.mit.edu	37	X	13645150	13645150	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGLN2	112398	broad.mit.edu	37	19	41292915	41292915	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK4	440275	broad.mit.edu	37	15	40259689	40259689	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF5B	9669	broad.mit.edu	37	2	100015424	100015424	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP6	133121	broad.mit.edu	37	4	185018489	185018489	+	Silent	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP300	2033	broad.mit.edu	37	22	41572157	41572157	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP300	2033	broad.mit.edu	37	22	41572505	41572505	+	Silent	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPN2	22905	broad.mit.edu	37	17	19186825	19186825	+	Silent	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15	2060	broad.mit.edu	37	1	51869047	51869047	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERRFI1	54206	broad.mit.edu	37	1	8075586	8075586	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216680263	216680263	+	3'UTR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133602209	133602209	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66085816	66085816	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAIM3	9214	broad.mit.edu	37	1	207087656	207087679	+	Intron	DEL	TTCCTTCCTTCCTTCCTTCCTTCC	-	-	rs72020502		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM104B	90736	broad.mit.edu	37	X	55187515	55187515	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123B	139285	broad.mit.edu	37	X	63412038	63412038	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129A	116496	broad.mit.edu	37	1	184764489	184764489	+	Silent	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129B	64855	broad.mit.edu	37	9	130270748	130270748	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139180013	139180013	+	Intron	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34961740	34961740	+	Silent	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12405756	12405756	+	Intron	SNP	A	C	C	rs149228499	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43629154	43629154	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCI	55215	broad.mit.edu	37	15	89816700	89816700	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP1	10160	broad.mit.edu	37	13	99012722	99012723	+	Intron	INS	-	AC	AC	rs141598244	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157665171	157665171	+	Silent	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125103885	125103885	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD1	29109	broad.mit.edu	37	16	67266053	67266053	+	Silent	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIZ1	84922	broad.mit.edu	37	19	56109421	56109422	+	Intron	DEL	CT	-	-			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ12825	440101	broad.mit.edu	37	12	54497545	54497546	+	Intron	INS	-	T	T	rs144888465	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40330	645784	broad.mit.edu	37	2	89100645	89100645	+	RNA	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128491451	128491451	+	Intron	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR1	2357	broad.mit.edu	37	19	52249646	52249646	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79290857	79290857	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79458084	79458084	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29645884	29645884	+	Intron	SNP	G	A	A	rs73610074		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29648092	29648092	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD5	84978	broad.mit.edu	37	15	44211933	44211933	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12632857	12632857	+	Intron	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCN1	6624	broad.mit.edu	37	7	5644976	5644976	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL4	23105	broad.mit.edu	37	5	132556372	132556372	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYTTD1	84248	broad.mit.edu	37	3	197501003	197501003	+	Intron	DEL	T	-	-			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB3	139716	broad.mit.edu	37	X	153925479	153925479	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26825498	26825498	+	Missense_Mutation	SNP	C	A	A	rs121913125		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11363516	11363517	+	Intron	DEL	TT	-	-	rs142980770		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAPDH	2597	broad.mit.edu	37	12	6646512	6646512	+	Missense_Mutation	SNP	G	T	T	rs77154254		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89652625	89652625	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFAP	2670	broad.mit.edu	37	17	42991741	42991742	+	Intron	INS	-	CC	CC	rs139158115	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA4	441509	broad.mit.edu	37	X	102962325	102962325	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLUD2	2747	broad.mit.edu	37	X	120182570	120182570	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG4	2786	broad.mit.edu	37	1	235715362	235715362	+	3'UTR	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA2	2801	broad.mit.edu	37	9	131019381	131019381	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB10	2887	broad.mit.edu	37	7	50660834	50660834	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94436475	94436475	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94693218	94693218	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	10006438	10006438	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146350825	146350825	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GXYLT1	283464	broad.mit.edu	37	12	42499724	42499724	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HARS	3035	broad.mit.edu	37	5	140054474	140054474	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS8	93323	broad.mit.edu	37	19	17170423	17170423	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153230086	153230086	+	Silent	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AB	8335	broad.mit.edu	37	6	26033628	26033628	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK2	3099	broad.mit.edu	37	2	75094768	75094768	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKDC1	80201	broad.mit.edu	37	10	71000488	71000488	+	Nonsense_Mutation	SNP	C	A	A	rs144034774		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HN1	51155	broad.mit.edu	37	17	73142706	73142706	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA2B1	3181	broad.mit.edu	37	7	26236846	26236846	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100995502	100995503	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160506118	160506118	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151164577	151164577	+	Silent	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF1	10320	broad.mit.edu	37	7	50358700	50358700	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35874618	35874618	+	Silent	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPDH2	3615	broad.mit.edu	37	3	49065198	49065198	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INF2	64423	broad.mit.edu	37	14	105170209	105170209	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5D	3635	broad.mit.edu	37	2	234104166	234104167	+	Intron	INS	-	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5K	51763	broad.mit.edu	37	17	1399297	1399297	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2B	3674	broad.mit.edu	37	17	42457539	42457539	+	Intron	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52821583	52821583	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	155893908	155893908	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC3	3748	broad.mit.edu	37	19	50826952	50826952	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19491848	19491848	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78669850	78669850	+	Silent	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196250087	196250087	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD19	146212	broad.mit.edu	37	16	67338266	67338266	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0427	9811	broad.mit.edu	37	18	46284307	46284308	+	Frame_Shift_Ins	INS	-	G	G	rs111264927		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43885762	43885762	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10412590	10412590	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4A	24137	broad.mit.edu	37	X	69595967	69595967	+	Silent	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KISS1	3814	broad.mit.edu	37	1	204165610	204165610	+	5'UTR	DEL	A	-	-	rs34468807		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70370862	70370862	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21474312	21474312	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARGE	9215	broad.mit.edu	37	22	33960658	33960658	+	Intron	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP4	113251	broad.mit.edu	37	12	50869442	50869442	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARS	51520	broad.mit.edu	37	5	145509752	145509752	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55087024	55087025	+	Intron	DNP	GG	AT	AT			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148012892	148012892	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC387646	387646	broad.mit.edu	37	10	27537635	27537635	+	3'UTR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC441204	441204	broad.mit.edu	37	7	26506726	26506726	+	Intron	DEL	T	-	-	rs34530363		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442308	442308	broad.mit.edu	37	7	55713648	55713648	+	RNA	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91810231	91810231	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91819206	91819206	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91819823	91819823	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC727924	727924	broad.mit.edu	37	15	22298051	22298051	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22577781	22577781	+	Intron	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAR3	23566	broad.mit.edu	37	1	85331432	85331432	+	Silent	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH3	84859	broad.mit.edu	37	3	197577740	197577740	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN3	54674	broad.mit.edu	37	7	110763928	110763928	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77745944	77745944	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33614460	33614460	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	14108533	14108533	+	Intron	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD1L1	8379	broad.mit.edu	37	7	2210440	2210440	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA4	4103	broad.mit.edu	37	X	151092880	151092880	+	Silent	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77649105	77649105	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALT1	10892	broad.mit.edu	37	18	56390406	56390406	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1B1	11253	broad.mit.edu	37	9	139996357	139996357	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K1	5604	broad.mit.edu	37	15	66736990	66736990	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7	9053	broad.mit.edu	37	6	136687027	136687027	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH4	57574	broad.mit.edu	37	2	217209809	217209809	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBOAT1	154141	broad.mit.edu	37	6	20113209	20113209	+	Silent	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART3P	442229	broad.mit.edu	37	6	66498971	66498971	+	RNA	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM6	4175	broad.mit.edu	37	2	136620149	136620149	+	Intron	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168833844	168833844	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEF2D	4209	broad.mit.edu	37	1	156450589	156450590	+	Intron	INS	-	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP5	8076	broad.mit.edu	37	12	8808248	8808248	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT6	4302	broad.mit.edu	37	17	36873842	36873842	+	Silent	SNP	T	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP1	4312	broad.mit.edu	37	11	102667843	102667843	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS2	51116	broad.mit.edu	37	9	138395821	138395821	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSI1	4440	broad.mit.edu	37	12	120800882	120800882	+	Silent	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8971891	8971891	+	Intron	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9019961	9019961	+	Intron	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9059040	9059040	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9073841	9073841	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1213092	1213092	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49412493	49412493	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10222425	10222425	+	Silent	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL3	4634	broad.mit.edu	37	3	46904771	46904771	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1E	4643	broad.mit.edu	37	15	59553679	59553679	+	Silent	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171264122	171264122	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NANOS2	339345	broad.mit.edu	37	19	46417902	46417902	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV1	89796	broad.mit.edu	37	1	201751666	201751666	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145311563	145311563	+	Intron	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145577956	145577956	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16936039	16936040	+	Intron	INS	-	TTCA	TTCA	rs147837394		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF3	84224	broad.mit.edu	37	1	21806533	21806533	+	Intron	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145054268	145054269	+	Intron	INS	-	G	G	rs149978567		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	112907048	112907048	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA1	8648	broad.mit.edu	37	2	24930338	24930338	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA10	4705	broad.mit.edu	37	2	240928437	240928437	+	Intron	DEL	T	-	-	rs4149564		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFE2L2	4780	broad.mit.edu	37	2	178098968	178098968	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC4	58484	broad.mit.edu	37	2	32476460	32476460	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120546766	120546766	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115409788	115409788	+	Intron	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206648725	206648726	+	Intron	INS	-	AC	AC	rs139928312	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUCB1	4924	broad.mit.edu	37	19	49414515	49414516	+	Intron	DNP	GG	TT	TT			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	154108533	154108533	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102332439	102332439	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102335100	102335100	+	Silent	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101801924	101801924	+	5'Flank	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS3	4940	broad.mit.edu	37	12	113385773	113385773	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28000612	28000612	+	Silent	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123519489	123519489	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123519887	123519887	+	Silent	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78433851	78433851	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OIT3	170392	broad.mit.edu	37	10	74677435	74677435	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132642908	132642908	+	Intron	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H4	126541	broad.mit.edu	37	19	16059790	16059790	+	5'Flank	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1E1	8387	broad.mit.edu	37	17	3300975	3300975	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AK2	391191	broad.mit.edu	37	1	248129009	248129010	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B11	127623	broad.mit.edu	37	1	247615096	247615096	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M2	391194	broad.mit.edu	37	1	248343745	248343745	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2V2	285659	broad.mit.edu	37	5	180582495	180582495	+	Silent	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55135511	55135511	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C12	283093	broad.mit.edu	37	11	50003113	50003113	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D10	390197	broad.mit.edu	37	11	59245601	59245601	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D9	390199	broad.mit.edu	37	11	59282609	59282609	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G2	81282	broad.mit.edu	37	11	4936450	4936450	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E8	390079	broad.mit.edu	37	11	5878153	5878153	+	Silent	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A5	390084	broad.mit.edu	37	11	5989572	5989572	+	Silent	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC3L	23595	broad.mit.edu	37	6	88299900	88299900	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176668227	176668228	+	Intron	INS	-	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATL1	219988	broad.mit.edu	37	11	59420507	59420507	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX5	5079	broad.mit.edu	37	9	36846921	36846921	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP3	54039	broad.mit.edu	37	21	47217813	47217813	+	Intron	SNP	G	A	A	rs139090313	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP3	54039	broad.mit.edu	37	21	47217824	47217824	+	Intron	SNP	C	T	T	rs149941368	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91238016	91238016	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55913103	55913103	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA5	56143	broad.mit.edu	37	5	140203707	140203707	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140725412	140725412	+	Silent	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82582321	82582321	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCTP	58488	broad.mit.edu	37	17	53852237	53852237	+	Intron	SNP	T	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDAP1	11333	broad.mit.edu	37	7	98995504	98995504	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165848759	165848759	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPR	55066	broad.mit.edu	37	16	70182490	70182499	+	Intron	DEL	CTTCCCTTCC	-	-	rs71399995		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDYN	5173	broad.mit.edu	37	20	1961230	1961230	+	Silent	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFAS	5198	broad.mit.edu	37	17	8167643	8167643	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGD	5226	broad.mit.edu	37	1	10467955	10467955	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHC2	1912	broad.mit.edu	37	1	33799659	33799659	+	Intron	DEL	A	-	-			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHEX	5251	broad.mit.edu	37	X	22117197	22117197	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB2	90102	broad.mit.edu	37	3	111664227	111664227	+	Intron	SNP	G	A	A	rs139768531	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGP	51227	broad.mit.edu	37	21	38437987	38437987	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8789713	8789713	+	Intron	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2L1	9033	broad.mit.edu	37	10	102056665	102056665	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP4	8502	broad.mit.edu	37	2	159517892	159517892	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186951803	186951804	+	Intron	INS	-	TG	TG	rs145784457	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16812637	16812637	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLTP	5360	broad.mit.edu	37	20	44536190	44536190	+	Intron	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNCK	139728	broad.mit.edu	37	X	152937446	152937446	+	Silent	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNMA1	9240	broad.mit.edu	37	14	74179051	74179057	+	3'UTR	DEL	TGGCATT	-	-	rs1305033		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3D	661	broad.mit.edu	37	8	22104797	22104797	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L2	94026	broad.mit.edu	37	6	27278064	27278064	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAPDC1A	196051	broad.mit.edu	37	10	122273571	122273571	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37531189	37531189	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94540638	94540638	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5E	5529	broad.mit.edu	37	14	63920452	63920452	+	Silent	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPRC1	23082	broad.mit.edu	37	10	103906659	103906660	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRF1	5551	broad.mit.edu	37	10	72358889	72358889	+	Silent	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57461782	57461782	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24135199	24135199	+	Missense_Mutation	SNP	C	T	T	rs139055681	byFrequency;by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCE	5581	broad.mit.edu	37	2	46314105	46314105	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCH	5583	broad.mit.edu	37	14	61917509	61917509	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLH	51052	broad.mit.edu	37	2	238474911	238474912	+	5'Flank	INS	-	AT	AT	rs148646552	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD2	5708	broad.mit.edu	37	3	184026219	184026219	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME2	5721	broad.mit.edu	37	14	24615758	24615758	+	Silent	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	9209992	9209992	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41515516	41515516	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD1	79912	broad.mit.edu	37	12	21621465	21621465	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD2	84795	broad.mit.edu	37	10	100143506	100143506	+	3'UTR	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDML	140902	broad.mit.edu	37	20	42972002	42972002	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3D	9545	broad.mit.edu	37	19	11446278	11446279	+	Intron	INS	-	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM11	54033	broad.mit.edu	37	21	15599378	15599378	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM12B	389677	broad.mit.edu	37	8	94747019	94747019	+	Silent	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM5	10181	broad.mit.edu	37	3	50148145	50148145	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH8	50700	broad.mit.edu	37	19	10131494	10131494	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL3	57139	broad.mit.edu	37	19	11515990	11515990	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240969390	240969390	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS9	8787	broad.mit.edu	37	17	63186286	63186286	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDL3	162494	broad.mit.edu	37	17	30643270	30643270	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105257096	105257097	+	Intron	DNP	CA	TT	TT			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF128	79589	broad.mit.edu	37	X	106034546	106034546	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF215	200312	broad.mit.edu	37	22	30776225	30776225	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL18A	6142	broad.mit.edu	37	19	17973709	17973709	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KB2	6199	broad.mit.edu	37	11	67201615	67201616	+	Intron	INS	-	G	G	rs56326725	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78919633	78919633	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RWDD4A	201965	broad.mit.edu	37	4	184572586	184572586	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237608767	237608767	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237659764	237659764	+	Intron	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33955863	33955863	+	Silent	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134990727	134990727	+	Silent	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62049174	62049174	+	Silent	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38639328	38639328	+	Silent	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4201510	4201510	+	Intron	SNP	C	T	T	rs142068935	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24C	9632	broad.mit.edu	37	10	75526299	75526300	+	Splice_Site	DNP	GG	TT	TT			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFPQ	6421	broad.mit.edu	37	1	35653772	35653772	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGPL1	8879	broad.mit.edu	37	10	72611005	72611005	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM4	57477	broad.mit.edu	37	X	50378103	50378103	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIAH2	6478	broad.mit.edu	37	3	150459978	150459978	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC8	27181	broad.mit.edu	37	19	51960886	51960887	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A2	6567	broad.mit.edu	37	X	73740727	73740727	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100774659	100774659	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A2	6506	broad.mit.edu	37	11	35314560	35314560	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A2	6506	broad.mit.edu	37	11	35314568	35314568	+	Intron	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A28	81894	broad.mit.edu	37	10	101372268	101372268	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A30	253512	broad.mit.edu	37	13	45970003	45970003	+	3'UTR	SNP	A	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F5	80255	broad.mit.edu	37	2	114492258	114492258	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A1	206358	broad.mit.edu	37	5	150867731	150867731	+	Silent	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A2	153201	broad.mit.edu	37	5	150715165	150715165	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18266683	18266683	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A11	115584	broad.mit.edu	37	16	24909207	24909207	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A7	60482	broad.mit.edu	37	2	108609657	108609657	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A14	11254	broad.mit.edu	37	X	115565696	115565697	+	5'Flank	INS	-	ATT	ATT	rs147517599		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21453282	21453282	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN13	146857	broad.mit.edu	37	17	33772525	33772525	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168110989	168110989	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84455171	84455171	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1A	8243	broad.mit.edu	37	X	53438899	53438899	+	Intron	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNPH	9751	broad.mit.edu	37	20	1258326	1258326	+	Intron	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121448005	121448005	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN4	441525	broad.mit.edu	37	X	142113847	142113848	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52938291	52938291	+	Silent	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220355303	220355303	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIN3	169981	broad.mit.edu	37	X	57020599	57020599	+	3'UTR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPNS1	83985	broad.mit.edu	37	16	28994105	28994105	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRM	6723	broad.mit.edu	37	1	11115026	11115026	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSTR1	6751	broad.mit.edu	37	14	38679765	38679765	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53055541	53055541	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA2	8128	broad.mit.edu	37	15	92981563	92981563	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD8	9754	broad.mit.edu	37	X	67932897	67932897	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3A	3703	broad.mit.edu	37	11	125483103	125483103	+	Intron	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70428622	70428622	+	Intron	DEL	A	-	-	rs35356580		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT4A1	25830	broad.mit.edu	37	22	44234824	44234824	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN1	6853	broad.mit.edu	37	X	47466579	47466579	+	Silent	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYS1	90196	broad.mit.edu	37	20	43995536	43995536	+	Silent	SNP	C	T	T	rs142015382		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR3	6870	broad.mit.edu	37	4	104640714	104640715	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1	6872	broad.mit.edu	37	X	70602999	70602999	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX19	9095	broad.mit.edu	37	1	168250551	168250551	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114837299	114837299	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEA3	6920	broad.mit.edu	37	1	23719087	23719087	+	Intron	SNP	A	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20852690	20852690	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFA	7039	broad.mit.edu	37	2	70692618	70692618	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133898735	133898735	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THY1	7070	broad.mit.edu	37	11	119290907	119290907	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153537912	153537912	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2616585	2616585	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF1	8577	broad.mit.edu	37	9	103338824	103338824	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM49	81671	broad.mit.edu	37	17	57915824	57915827	+	Intron	DEL	CTCA	-	-			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPRG1	285386	broad.mit.edu	37	3	188896002	188896002	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186324934	186324934	+	Intron	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPST1	8460	broad.mit.edu	37	7	65705395	65705395	+	5'UTR	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42242258	42242258	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54957787	54957787	+	3'UTR	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111095552	111095552	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC6	7225	broad.mit.edu	37	11	101341849	101341849	+	Intron	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31332302	31332302	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31340014	31340014	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73151377	73151377	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSNARE1	203062	broad.mit.edu	37	8	143407867	143407867	+	Intron	SNP	C	T	T	rs112390155		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSN	7247	broad.mit.edu	37	2	122522531	122522531	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN7	7102	broad.mit.edu	37	X	38540557	38540557	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK2	146057	broad.mit.edu	37	15	43086859	43086859	+	Silent	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7B	145567	broad.mit.edu	37	14	91155922	91155922	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL5	23093	broad.mit.edu	37	14	76330023	76330023	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF2	11338	broad.mit.edu	37	19	56171027	56171028	+	Intron	INS	-	T	T	rs140547487	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2NL	389898	broad.mit.edu	37	X	142967318	142967318	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17720637	17720637	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210642159	210642159	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPRT	139596	broad.mit.edu	37	X	74513312	74513312	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB1	9875	broad.mit.edu	37	21	33740703	33740703	+	Intron	DEL	T	-	-	rs71722731		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215857146	215857146	+	Intron	DEL	T	-	-	rs75473916		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP11L	51118	broad.mit.edu	37	1	38482219	38482219	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP11L	51118	broad.mit.edu	37	1	38482228	38482228	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42649142	42649142	+	IGR	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	80659960	80659960	+	IGR	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56279979	56279979	+	IGR	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87762130	87762130	+	IGR	SNP	T	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	100574345	100574345	+	IGR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	155661	155661	+	IGR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806519	19806519	+	IGR	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	26246287	26246287	+	IGR	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	56790050	56790051	+	IGR	INS	-	CCT	CCT	rs142698134	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	57511148	57511148	+	IGR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	58082075	58082076	+	IGR	INS	-	TTC	TTC			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	74844607	74844607	+	IGR	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	74844634	74844634	+	IGR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	70274628	70274629	+	IGR	INS	-	G	G	rs143961615	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33046692	33046692	+	IGR	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	80096453	80096456	+	IGR	DEL	TCAC	-	-			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	15737047	15737047	+	IGR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21550479	21550479	+	IGR	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22258401	22258401	+	IGR	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	65272359	65272359	+	IGR	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11644081	11644081	+	IGR	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	10187459	10187462	+	IGR	DEL	GGAA	-	-			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	16013810	16013810	+	IGR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29621924	29621925	+	IGR	INS	-	C	C	rs150331215	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51497716	51497717	+	IGR	INS	-	G	G	rs144670178	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111271250	111271250	+	IGR	DEL	G	-	-	rs35310672		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	12901025	12901025	+	IGR	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142555330	142555330	+	IGR	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149093260	149093260	+	IGR	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166245277	166245277	+	IGR	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166246735	166246735	+	IGR	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208007249	208007249	+	IGR	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	21746078	21746078	+	IGR	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229226050	229226051	+	IGR	INS	-	T	T	rs141074582	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242220969	242220969	+	IGR	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	56901678	56901678	+	IGR	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79520946	79520946	+	IGR	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87693868	87693868	+	IGR	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23918926	23918926	+	IGR	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	25737830	25737831	+	IGR	INS	-	G	G	rs149587535	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	25901167	25901167	+	IGR	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29862570	29862570	+	IGR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10885582	10885582	+	IGR	SNP	C	T	T	rs142981708	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11117412	11117412	+	IGR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11120615	11120615	+	IGR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11123579	11123579	+	IGR	DEL	A	-	-	rs76319626		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9848185	9848185	+	IGR	SNP	C	T	T	rs78913844	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	124519801	124519801	+	IGR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132775280	132775280	+	IGR	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132799888	132799888	+	IGR	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133121422	133121422	+	IGR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194141880	194141880	+	IGR	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	201160032	201160032	+	IGR	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	33862437	33862438	+	IGR	DNP	GG	AT	AT			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91790799	91790799	+	IGR	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190894317	190894317	+	IGR	SNP	A	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	20198017	20198017	+	IGR	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49515291	49515291	+	IGR	SNP	T	A	A	rs2872265	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	99169951	99169951	+	IGR	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	113499625	113499625	+	IGR	DEL	T	-	-	rs35432162		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	168043277	168043277	+	IGR	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910859	25910859	+	IGR	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	33219404	33219404	+	IGR	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	57668279	57668279	+	IGR	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97674950	97674950	+	IGR	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	140583322	140583322	+	IGR	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	148494726	148494726	+	IGR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57562855	57562855	+	IGR	DEL	A	-	-	rs68009168		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142588377	142588378	+	IGR	INS	-	CA	CA			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57929485	57929485	+	IGR	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61827222	61827222	+	IGR	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134420489	134420489	+	IGR	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	16276738	16276738	+	IGR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	52873855	52873855	+	IGR	SNP	G	C	C	rs116867982	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	13987194	13987194	+	IGR	SNP	G	A	A	rs143431245	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	15361531	15361531	+	IGR	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44854316	44854316	+	IGR	SNP	C	T	T	rs111292557	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68403688	68403688	+	IGR	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68415332	68415332	+	IGR	SNP	T	C	C	rs71262206		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68450676	68450676	+	IGR	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68469325	68469325	+	IGR	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68477482	68477482	+	IGR	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68698032	68698032	+	IGR	SNP	T	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120466555	120466555	+	IGR	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134743301	134743301	+	IGR	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141282673	141282673	+	IGR	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146060373	146060373	+	IGR	SNP	T	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	149400721	149400721	+	IGR	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	3450238	3450238	+	IGR	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	43889745	43889745	+	IGR	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48181786	48181786	+	IGR	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65719014	65719014	+	IGR	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79827809	79827809	+	IGR	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9964246	9964246	+	IGR	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAPB	9217	broad.mit.edu	37	20	57019366	57019366	+	3'UTR	SNP	G	T	T	rs138521885	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98797496	98797496	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB39	9880	broad.mit.edu	37	12	57398384	57398384	+	Silent	SNP	A	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46543636	46543636	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC11	79844	broad.mit.edu	37	5	816844	816844	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC2	51201	broad.mit.edu	37	8	17055906	17055906	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF100	163227	broad.mit.edu	37	19	21909553	21909553	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF100	163227	broad.mit.edu	37	19	21909994	21909994	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF142	7701	broad.mit.edu	37	2	219503289	219503289	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF160	90338	broad.mit.edu	37	19	53577369	53577369	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF383	163087	broad.mit.edu	37	19	37726372	37726372	+	Intron	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF415	55786	broad.mit.edu	37	19	53611628	53611628	+	3'UTR	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30934457	30934457	+	Intron	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30936718	30936718	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF548	147694	broad.mit.edu	37	19	57905546	57905546	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71576193	71576193	+	Missense_Mutation	SNP	A	G	G	rs139959335		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF673	55634	broad.mit.edu	37	X	46316286	46316286	+	Intron	SNP	T	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF708	7562	broad.mit.edu	37	19	21476864	21476864	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF711	7552	broad.mit.edu	37	X	84526774	84526774	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF718	255403	broad.mit.edu	37	4	106242	106242	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF71	58491	broad.mit.edu	37	19	57133886	57133886	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN10	84891	broad.mit.edu	37	16	3142081	3142081	+	Silent	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZXDA	7789	broad.mit.edu	37	X	57934639	57934639	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22675815	22675815	+	Intron	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44398537	44398537	+	Intron	DEL	T	-	-	rs145389397		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142671682	142671682	+	Intron	SNP	T	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142860845	142860845	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142960478	142960478	+	Intron	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143168248	143168248	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	569451	569451	+	RNA	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28792679	28792679	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89545099	89545099	+	Intron	SNP	C	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90044315	90044315	+	Intron	SNP	G	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90419565	90419565	+	Intron	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190809133	190809133	+	Intron	SNP	C	A	A	rs112599602		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190809150	190809150	+	Intron	SNP	G	A	A	rs144451282	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	84999223	84999223	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136848963	136848963	+	RNA	SNP	C	G	G			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	29597904	29597904	+	Intron	SNP	G	A	A	rs143619014	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	37780927	37780927	+	Intron	SNP	T	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	40501725	40501725	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	98857845	98857845	+	Intron	SNP	C	T	T			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	11391	11391	+	RNA	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	8902	8902	+	RNA	SNP	G	A	A			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
