Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCC2	1244	broad.mit.edu	37	10	101605389	101605389	+	Silent	SNP	G	C	C	rs142713507		TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119025058	119025058	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAA2	10449	broad.mit.edu	37	18	47322161	47322161	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAT1	38	broad.mit.edu	37	11	108012291	108012291	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACMSD	130013	broad.mit.edu	37	2	135619409	135619409	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT12	134526	broad.mit.edu	37	5	80655735	80655735	+	Silent	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTB	60	broad.mit.edu	37	7	5569036	5569036	+	Intron	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156915125	156915125	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106312081	106312081	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106511974	106511974	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106934468	106934468	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107211333	107211333	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107275877	107275877	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84582188	84582188	+	Intron	SNP	A	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1229333	1229333	+	Intron	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131826478	131826478	+	Intron	SNP	A	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131861961	131861961	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADIPOR2	79602	broad.mit.edu	37	12	1892944	1892944	+	Intron	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100625458	100625458	+	Intron	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56203480	56203480	+	Silent	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41615756	41615756	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114266956	114266956	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1B1	162	broad.mit.edu	37	22	29735760	29735760	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB2	323	broad.mit.edu	37	4	40832705	40832705	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP30	257106	broad.mit.edu	37	1	161021035	161021035	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138870531	138870531	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138901644	138901644	+	Intron	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119509050	119509050	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN2	6311	broad.mit.edu	37	12	111907921	111907921	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69653863	69653863	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP3	651	broad.mit.edu	37	4	81967347	81967347	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36959265	36959265	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRDT	676	broad.mit.edu	37	1	92459700	92459700	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf18	54906	broad.mit.edu	37	10	5762569	5762569	+	5'UTR	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf68	79741	broad.mit.edu	37	10	32873348	32873348	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf71	118461	broad.mit.edu	37	10	50532047	50532047	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf81	79949	broad.mit.edu	37	10	115529654	115529654	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33667500	33667501	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf21	283651	broad.mit.edu	37	15	45847914	45847914	+	RNA	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf26	161502	broad.mit.edu	37	15	81429058	81429058	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf41	126123	broad.mit.edu	37	19	50662748	50662748	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179523438	179523438	+	Intron	DEL	T	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75036623	75036623	+	Intron	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf114	92747	broad.mit.edu	37	20	31892648	31892648	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf37	285555	broad.mit.edu	37	4	98865208	98865208	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	47846939	47846939	+	Silent	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf58	352999	broad.mit.edu	37	6	127898250	127898250	+	5'Flank	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf43	257169	broad.mit.edu	37	9	116187352	116187352	+	Silent	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA4	762	broad.mit.edu	37	17	58234824	58234824	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105495227	105495227	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN1	869	broad.mit.edu	37	16	49315227	49315227	+	Silent	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119909874	119909874	+	Silent	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCM2	83605	broad.mit.edu	37	7	45077868	45077868	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7548949	7548949	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD22	933	broad.mit.edu	37	19	35828522	35828522	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD274	29126	broad.mit.edu	37	9	5455961	5455961	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDAN1	146059	broad.mit.edu	37	15	43027621	43027621	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH26	60437	broad.mit.edu	37	20	58571120	58571120	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAF1A	10036	broad.mit.edu	37	19	4423914	4423914	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40179896	40179896	+	Intron	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIA	27159	broad.mit.edu	37	1	111857701	111857701	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN14	23562	broad.mit.edu	37	21	37833396	37833396	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN1	22883	broad.mit.edu	37	1	9793954	9793954	+	Intron	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39171256	39171256	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125671821	125671821	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75855808	75855808	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139767254	139767254	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86196532	86196532	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137708877	137708877	+	Silent	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238270494	238270495	+	Intron	DNP	CC	AA	AA			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPAMD8	27151	broad.mit.edu	37	19	17091488	17091488	+	Silent	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197237472	197237472	+	5'UTR	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36771536	36771536	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSDAP1	440359	broad.mit.edu	37	16	31579670	31579670	+	3'UTR	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT2	55454	broad.mit.edu	37	10	43657820	43657820	+	Intron	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34008578	34008578	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34083348	34083348	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34128802	34128802	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113421176	113421176	+	Silent	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDP1	9150	broad.mit.edu	37	18	77473137	77473137	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80390011	80390011	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68040410	68040410	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUEDC2	79004	broad.mit.edu	37	10	104184352	104184352	+	Intron	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf23	256643	broad.mit.edu	37	X	19984178	19984178	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC1	1538	broad.mit.edu	37	X	83128938	83128938	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2F1	1572	broad.mit.edu	37	19	41628047	41628047	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAZL	1618	broad.mit.edu	37	3	16630281	16630281	+	Intron	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50734081	50734081	+	Silent	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC2	51473	broad.mit.edu	37	6	24288992	24288992	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162741929	162741929	+	Silent	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX31	64794	broad.mit.edu	37	9	135535215	135535215	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169295016	169295016	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140285473	140285473	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS2	10202	broad.mit.edu	37	14	24108203	24108203	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96212914	96212914	+	Missense_Mutation	SNP	G	C	C	rs149470789		TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	107847035	107847035	+	Silent	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83691638	83691638	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG3	1741	broad.mit.edu	37	X	69698992	69698992	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124389679	124389679	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMP1	1758	broad.mit.edu	37	4	88583611	88583611	+	Silent	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124416425	124416425	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21136530	21136530	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196860137	196860137	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117722182	117722182	+	Silent	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25265569	25265571	+	In_Frame_Del	DEL	GAG	-	-	rs150764947		TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	441270	441270	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY1	23033	broad.mit.edu	37	6	83842100	83842105	+	Intron	DEL	ACACAA	-	-	rs143426789	by1000genomes	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC1	1823	broad.mit.edu	37	18	28723487	28723487	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSE	29940	broad.mit.edu	37	6	116756950	116756950	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDN1	1906	broad.mit.edu	37	6	12296272	12296272	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFEMP2	30008	broad.mit.edu	37	11	65637810	65637810	+	Intron	SNP	T	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK2	5610	broad.mit.edu	37	2	37366673	37366673	+	Intron	SNP	A	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107535627	107535627	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107535640	107535640	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML5	161436	broad.mit.edu	37	14	89151553	89151553	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOSF1	55556	broad.mit.edu	37	18	683371	683371	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX2	10495	broad.mit.edu	37	X	129822756	129822756	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5397853	5397853	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB42	2038	broad.mit.edu	37	15	43500990	43500990	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89462129	89462129	+	Intron	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66218787	66218787	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPO	2056	broad.mit.edu	37	7	100319219	100319219	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC6	2074	broad.mit.edu	37	10	50681411	50681411	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC6	2074	broad.mit.edu	37	10	50738714	50738714	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESM1	11082	broad.mit.edu	37	5	54275342	54275342	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC2	132884	broad.mit.edu	37	4	5576458	5576458	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133827278	133827278	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154189310	154189310	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM124B	79843	broad.mit.edu	37	2	225266227	225266227	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM125B	89853	broad.mit.edu	37	9	129154262	129154262	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129A	116496	broad.mit.edu	37	1	184863350	184863350	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139160932	139160932	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61014282	61014282	+	Intron	SNP	T	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM167A	83648	broad.mit.edu	37	8	11282067	11282067	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47C	442444	broad.mit.edu	37	X	37028942	37028942	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B1	100130302	broad.mit.edu	37	X	24382882	24382882	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM50A	9130	broad.mit.edu	37	X	153674843	153674843	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12237459	12237460	+	Intron	DNP	GG	TT	TT			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43625067	43625067	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM81B	153643	broad.mit.edu	37	5	94726847	94726847	+	5'Flank	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9C	171484	broad.mit.edu	37	X	13061755	13061755	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASLG	356	broad.mit.edu	37	1	172628388	172628388	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126412316	126412316	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8159411	8159411	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO15	201456	broad.mit.edu	37	18	71740732	71740732	+	Silent	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR1C	100132417	broad.mit.edu	37	1	149375122	149375122	+	RNA	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2A	2212	broad.mit.edu	37	1	161476251	161476251	+	Silent	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128481178	128481178	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLOT1	10211	broad.mit.edu	37	6	30698927	30698927	+	Intron	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL1	752	broad.mit.edu	37	17	43321499	43321501	+	Intron	DEL	GGA	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171254526	171254526	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXR2	139628	broad.mit.edu	37	X	55650340	55650340	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG2B	441581	broad.mit.edu	37	10	135440217	135440217	+	Silent	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37745306	37745306	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12725741	12725742	+	Missense_Mutation	DNP	CG	AA	AA			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17491195	17491195	+	5'Flank	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26589865	26589865	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88419370	88419370	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155265450	155265450	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11400966	11400966	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAR1	54433	broad.mit.edu	37	4	110740363	110740363	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9821344	9821344	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA	2629	broad.mit.edu	37	1	155206036	155206036	+	Silent	SNP	C	T	T	rs138498426		TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDPD4	220032	broad.mit.edu	37	11	76956619	76956619	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIN1	54826	broad.mit.edu	37	5	102432207	102432207	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIT2	9815	broad.mit.edu	37	12	110370790	110370790	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GORASP2	26003	broad.mit.edu	37	2	171822507	171822507	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20337710	20337710	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC3	2719	broad.mit.edu	37	X	132833890	132833890	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR114	221188	broad.mit.edu	37	16	57609065	57609065	+	Intron	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR56	9289	broad.mit.edu	37	16	57697403	57697403	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB7	2886	broad.mit.edu	37	17	37900365	37900365	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA3	2892	broad.mit.edu	37	X	122387465	122387465	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66961681	66961681	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2IRD1	9569	broad.mit.edu	37	7	73922622	73922622	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2IRD1	9569	broad.mit.edu	37	7	74009461	74009462	+	Intron	DNP	AG	GA	GA			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2IRD1	9569	broad.mit.edu	37	7	74009477	74009477	+	Intron	DEL	A	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPE	2996	broad.mit.edu	37	4	144797951	144797951	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HACL1	26061	broad.mit.edu	37	3	15626909	15626920	+	Intron	DEL	TCAAAGATAATT	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAP1	9001	broad.mit.edu	37	17	39884007	39884007	+	Intron	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXA	3073	broad.mit.edu	37	15	72645968	72645968	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81374365	81374365	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81391958	81391958	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK2	3099	broad.mit.edu	37	2	75114865	75114865	+	Intron	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29797632	29797632	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22159916	22159916	+	Intron	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATIP2	10553	broad.mit.edu	37	11	20403819	20403819	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1E	3354	broad.mit.edu	37	6	87725323	87725323	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR4	3360	broad.mit.edu	37	5	147928401	147928401	+	Silent	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53579262	53579262	+	Intron	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53652829	53652852	+	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	-	-	rs78801842	by1000genomes	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDS	3423	broad.mit.edu	37	X	148585657	148585657	+	Intron	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA10	3446	broad.mit.edu	37	9	21206513	21206513	+	3'UTR	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL22	50616	broad.mit.edu	37	12	68642525	68642525	+	3'UTR	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL9R	3581	broad.mit.edu	37	X	155235708	155235708	+	Intron	SNP	A	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS4	92105	broad.mit.edu	37	11	77618889	77618889	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL1	3670	broad.mit.edu	37	5	50683244	50683244	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAE	3682	broad.mit.edu	37	17	3626533	3626533	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64952803	64952803	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73849937	73849938	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	120178474	120178474	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137708496	137708496	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123200955	123200955	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10435101	10435101	+	Silent	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20A	10112	broad.mit.edu	37	5	137521475	137521475	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39325206	39325206	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF7	374654	broad.mit.edu	37	15	90188567	90188567	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL2	83746	broad.mit.edu	37	22	41620862	41620862	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107613538	107613538	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55177521	55177521	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN7C	55327	broad.mit.edu	37	11	27521053	27521053	+	Silent	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNPEP	4012	broad.mit.edu	37	5	96315736	96315736	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148012892	148012892	+	Intron	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC650368	650368	broad.mit.edu	37	11	3424762	3424762	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22441128	22441128	+	Intron	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23177025	23177025	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141113972	141113972	+	Silent	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141298347	141298347	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC25	126364	broad.mit.edu	37	19	18507421	18507421	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYPD5	284348	broad.mit.edu	37	19	44302658	44302658	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39750085	39750085	+	Silent	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA6	4105	broad.mit.edu	37	X	151869823	151869823	+	Silent	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB4	4115	broad.mit.edu	37	X	30261205	30261205	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEE1	57692	broad.mit.edu	37	X	75649783	75649784	+	Missense_Mutation	DNP	CC	AA	AA	rs143682541	byFrequency	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALT1	10892	broad.mit.edu	37	18	56401451	56401451	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21217432	21217432	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7	9053	broad.mit.edu	37	6	136709742	136709742	+	Intron	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK9	5601	broad.mit.edu	37	5	179665195	179665195	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM9	254394	broad.mit.edu	37	6	119245037	119245037	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME2	4200	broad.mit.edu	37	18	48473378	48473378	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS2	4212	broad.mit.edu	37	15	37375926	37375926	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD4	148808	broad.mit.edu	37	1	205568346	205568346	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD8	256471	broad.mit.edu	37	4	128865085	128865085	+	Silent	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1261	100302228	broad.mit.edu	37	11	90602425	90602425	+	5'Flank	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23811246	23811246	+	Missense_Mutation	SNP	A	T	T	rs143897856	byFrequency	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151864259	151864259	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55532197	55532197	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108751868	108751870	+	Intron	DEL	TTA	-	-	rs34222099		TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPL	4352	broad.mit.edu	37	1	43812045	43812045	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPO	4353	broad.mit.edu	37	17	56350206	56350206	+	Silent	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP5	64398	broad.mit.edu	37	14	67768207	67768207	+	Intron	SNP	A	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP6	51678	broad.mit.edu	37	7	24705860	24705860	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL13	28998	broad.mit.edu	37	8	121437552	121437552	+	Silent	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFR	4524	broad.mit.edu	37	1	11851250	11851250	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTIF3	219402	broad.mit.edu	37	13	28011508	28011508	+	Intron	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9007836	9007836	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUL1	79594	broad.mit.edu	37	1	20827905	20827905	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49415503	49415503	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5C	55930	broad.mit.edu	37	15	52517879	52517879	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYRIP	25924	broad.mit.edu	37	3	40204373	40204373	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP2	55728	broad.mit.edu	37	4	40115283	40115283	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16890958	16890958	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145075133	145075133	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPH	23397	broad.mit.edu	37	2	97007619	97007619	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54902294	54902294	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA3	8202	broad.mit.edu	37	20	46265192	46265192	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152374947	152374947	+	Intron	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEURL4	84461	broad.mit.edu	37	17	7219585	7219585	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63494651	63494651	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247587297	247587297	+	Silent	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL8	55035	broad.mit.edu	37	9	95069331	95069331	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69222964	69222964	+	5'UTR	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR5A1	2516	broad.mit.edu	37	9	127262970	127262970	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105181439	105181439	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163315660	163315660	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28228675	28228675	+	Intron	SNP	G	T	T	rs150220101	by1000genomes	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF2	4957	broad.mit.edu	37	9	131258469	131258469	+	Intron	DEL	T	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGT	8473	broad.mit.edu	37	X	70793528	70793528	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2D3	120775	broad.mit.edu	37	11	6942268	6942268	+	Silent	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247734	248247734	+	Intron	SNP	G	T	T	rs147146388	by1000genomes	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247881	248247881	+	Intron	SNP	A	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T29	343563	broad.mit.edu	37	1	248722841	248722841	+	5'Flank	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248436163	248436163	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K5	79317	broad.mit.edu	37	14	20388566	20388566	+	5'Flank	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4P4	81300	broad.mit.edu	37	11	55406549	55406549	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B2	26595	broad.mit.edu	37	11	124252875	124252875	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B3	390271	broad.mit.edu	37	11	124266883	124266883	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL8	114882	broad.mit.edu	37	12	76765387	76765387	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBP	5007	broad.mit.edu	37	11	59368252	59368252	+	Intron	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSR2	116039	broad.mit.edu	37	8	99962908	99962908	+	Silent	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21690111	21690111	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH8	5100	broad.mit.edu	37	13	53418775	53418775	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH8	5100	broad.mit.edu	37	13	53420598	53420598	+	Silent	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67802394	67802394	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1A	5136	broad.mit.edu	37	2	183096052	183096052	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31917697	31917697	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDSS2	57107	broad.mit.edu	37	6	107533225	107533225	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5	5830	broad.mit.edu	37	12	7361712	7361712	+	Silent	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB1	5207	broad.mit.edu	37	X	55020235	55020235	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM5	5239	broad.mit.edu	37	9	71098888	71098888	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11111113	11111113	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIBF1	10464	broad.mit.edu	37	13	73401179	73401179	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIBF1	10464	broad.mit.edu	37	13	73539483	73539483	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGG	54872	broad.mit.edu	37	4	493113	493113	+	5'UTR	DEL	A	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIR	8544	broad.mit.edu	37	X	15403297	15403297	+	Intron	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PJA2	9867	broad.mit.edu	37	5	108698755	108698755	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125267966	125267966	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP4	8502	broad.mit.edu	37	2	159490910	159490910	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G5	5322	broad.mit.edu	37	1	20416369	20416369	+	Silent	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59814331	59814331	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD1	5337	broad.mit.edu	37	3	171323014	171323014	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD2	5338	broad.mit.edu	37	17	4713045	4713045	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242508961	242508961	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131947895	131947895	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLN	5350	broad.mit.edu	37	6	118880214	118880214	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLSCR2	57047	broad.mit.edu	37	3	146166892	146166892	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLSCR2	57047	broad.mit.edu	37	3	146171851	146171851	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118236535	118236535	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24761476	24761476	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24762795	24762795	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1B	84172	broad.mit.edu	37	2	113309471	113309471	+	Silent	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3B	55703	broad.mit.edu	37	12	106820975	106820975	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POMT1	10585	broad.mit.edu	37	9	134393765	134393765	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIG	9360	broad.mit.edu	37	2	170465294	170465294	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5B	5526	broad.mit.edu	37	11	64700567	64700567	+	Intron	DEL	G	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R4	57718	broad.mit.edu	37	14	94708515	94708515	+	Intron	SNP	A	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP5C	5536	broad.mit.edu	37	19	46891774	46891774	+	Intron	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB4	5545	broad.mit.edu	37	12	11461970	11461970	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM13	59336	broad.mit.edu	37	6	100056654	100056654	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAA1	5562	broad.mit.edu	37	5	40767519	40767519	+	Intron	SNP	T	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30099917	30099917	+	Intron	DEL	T	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPH	5630	broad.mit.edu	37	12	49690770	49690770	+	Silent	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD2	5708	broad.mit.edu	37	3	184025155	184025155	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71477837	71477837	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGES2	80142	broad.mit.edu	37	9	130884774	130884775	+	Intron	DEL	AA	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFRN	5738	broad.mit.edu	37	1	117509848	117509848	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70974895	70974895	+	Silent	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198717268	198717268	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15731818	15731818	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40733347	40733347	+	Silent	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9353999	9353999	+	Intron	SNP	T	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB14	51552	broad.mit.edu	37	9	123945668	123945671	+	Frame_Shift_Del	DEL	AATT	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174725885	174725885	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1	23637	broad.mit.edu	37	9	125852587	125852587	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD21	5885	broad.mit.edu	37	8	117863084	117863084	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48892090	48892090	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48919228	48919229	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REEP4	80346	broad.mit.edu	37	8	21998952	21998952	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD2	64326	broad.mit.edu	37	1	176175636	176175636	+	Intron	DEL	C	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGNEF	64283	broad.mit.edu	37	5	73165730	73165731	+	Intron	INS	-	A	A	rs143184703	by1000genomes	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDL2	54933	broad.mit.edu	37	1	39352285	39352285	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152300042	152300042	+	Splice_Site	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS3	9783	broad.mit.edu	37	1	41101697	41101697	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF125	54941	broad.mit.edu	37	18	29617304	29617304	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78649341	78649341	+	Silent	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGB	10325	broad.mit.edu	37	X	55755677	55755677	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH1	89765	broad.mit.edu	37	21	43892897	43892897	+	3'UTR	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4IP1	84816	broad.mit.edu	37	6	107069328	107069328	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237753195	237753195	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS2	9701	broad.mit.edu	37	22	50861843	50861843	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASH1	23328	broad.mit.edu	37	6	148789547	148789548	+	Intron	DNP	GT	CA	CA			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3B	55800	broad.mit.edu	37	11	123505041	123505041	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCYL2	55681	broad.mit.edu	37	12	100704737	100704737	+	Intron	SNP	A	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13868528	13868528	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95090116	95090116	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD1A	9739	broad.mit.edu	37	16	30977308	30977308	+	Silent	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC3	53358	broad.mit.edu	37	9	91656987	91656987	+	Silent	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIDT1	54847	broad.mit.edu	37	3	113326986	113326991	+	In_Frame_Del	DEL	CTTCCT	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIDT1	54847	broad.mit.edu	37	3	113327317	113327318	+	In_Frame_Ins	INS	-	TGA	TGA			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIDT1	54847	broad.mit.edu	37	3	113327406	113327406	+	Intron	DEL	A	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPA	140885	broad.mit.edu	37	20	1915232	1915232	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164748395	164748395	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A6	6511	broad.mit.edu	37	19	15064916	15064916	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC20A2	6575	broad.mit.edu	37	8	42302222	42302222	+	Silent	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A9	114571	broad.mit.edu	37	11	63143161	63143161	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A3	1811	broad.mit.edu	37	7	107434477	107434477	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC43A3	29015	broad.mit.edu	37	11	57176818	57176818	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162804157	162804157	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20628684	20628684	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21349796	21349796	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2B1	11309	broad.mit.edu	37	11	74899193	74899193	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD2	4087	broad.mit.edu	37	18	45391530	45391530	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCB1	6598	broad.mit.edu	37	22	24145680	24145680	+	Intron	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPDL3A	10924	broad.mit.edu	37	6	123130282	123130282	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD5	10322	broad.mit.edu	37	2	73446058	73446058	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-20	100033460	broad.mit.edu	37	15	25468349	25468349	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOAT1	6646	broad.mit.edu	37	1	179314114	179314114	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108716299	108716299	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106927120	106927120	+	Intron	DEL	C	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231281052	231281052	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA17	128153	broad.mit.edu	37	1	217947893	217947893	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158607871	158607871	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158652984	158652984	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41009825	41009825	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65233988	65233988	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A3	79644	broad.mit.edu	37	4	56212692	56212692	+	Silent	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRT	51593	broad.mit.edu	37	7	100481932	100481932	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP2	23635	broad.mit.edu	37	5	80762883	80762883	+	Intron	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149502581	149502581	+	Silent	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX6	280657	broad.mit.edu	37	X	47979522	47979522	+	3'UTR	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104109795	104109795	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG2	10735	broad.mit.edu	37	X	123202405	123202405	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1E1	6783	broad.mit.edu	37	4	70709983	70709983	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4418225	4418225	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113170491	113170491	+	Silent	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113259169	113259169	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2	10388	broad.mit.edu	37	20	58467212	58467212	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152652224	152652224	+	Silent	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT16	83851	broad.mit.edu	37	14	62550851	62550851	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL5	94122	broad.mit.edu	37	X	37984474	37984474	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF15	8148	broad.mit.edu	37	17	34144851	34144851	+	Intron	DEL	A	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS	6897	broad.mit.edu	37	5	33461819	33461819	+	Silent	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D21	161514	broad.mit.edu	37	15	74178975	74178975	+	Intron	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D9	23158	broad.mit.edu	37	4	141578387	141578387	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET2	54790	broad.mit.edu	37	4	106155487	106155487	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX13A	56157	broad.mit.edu	37	X	104463999	104463999	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30699765	30699765	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50807960	50807960	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFB2M	64216	broad.mit.edu	37	1	246707918	246707918	+	Silent	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137814684	137814684	+	Silent	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63031648	63031648	+	Silent	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM123	114908	broad.mit.edu	37	11	102272641	102272641	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM38B	55151	broad.mit.edu	37	9	108472593	108472593	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM87A	25963	broad.mit.edu	37	15	42525345	42525345	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMOD3	29766	broad.mit.edu	37	15	52153328	52153328	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68935632	68935632	+	Intron	SNP	T	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175304753	175304753	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX4	9878	broad.mit.edu	37	14	21963234	21963234	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579494	7579494	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF1	7185	broad.mit.edu	37	9	123675582	123675582	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF5	7188	broad.mit.edu	37	1	211527677	211527677	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM49	57093	broad.mit.edu	37	11	89537547	89537547	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT2B	79979	broad.mit.edu	37	X	100276997	100276997	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC6	7225	broad.mit.edu	37	11	101353775	101353775	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN12	23554	broad.mit.edu	37	7	120428836	120428836	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC3	7267	broad.mit.edu	37	21	38480859	38480859	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC5	91875	broad.mit.edu	37	14	20760331	20760331	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL13	440307	broad.mit.edu	37	15	90799470	90799470	+	Silent	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179417150	179417150	+	Silent	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179444862	179444862	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179464277	179464277	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179478980	179478980	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179594784	179594784	+	Intron	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179616022	179616022	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179659595	179659595	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3D	113457	broad.mit.edu	37	2	132240334	132240334	+	Silent	SNP	C	A	A	rs2272356	byFrequency;by1000genomes	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUSC3	7991	broad.mit.edu	37	8	15605885	15605885	+	Silent	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2D3	7323	broad.mit.edu	37	4	103730859	103730859	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2U	148581	broad.mit.edu	37	1	64680450	64680450	+	Intron	DEL	A	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN2	29978	broad.mit.edu	37	X	56591354	56591354	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT1	56886	broad.mit.edu	37	2	128932405	128932405	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17763424	17763424	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215807694	215807694	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216074375	216074375	+	Intron	SNP	T	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	126132373	126132373	+	IGR	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	44227877	44227877	+	IGR	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	47724569	47724569	+	IGR	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	60897866	60897866	+	IGR	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127811481	127811481	+	IGR	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	91894927	91894927	+	IGR	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	23411431	23411431	+	IGR	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79335780	79335780	+	IGR	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137858	20137858	+	IGR	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20265457	20265457	+	IGR	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	34669524	34669525	+	IGR	INS	-	GGAAGGAAGGAA	GGAAGGAAGGAA	rs60602289		TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45329871	45329871	+	IGR	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59261468	59261468	+	IGR	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97702100	97702100	+	IGR	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97980620	97980627	+	IGR	DEL	CCTTCCTC	-	-	rs113634866		TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22691436	22691436	+	IGR	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22789476	22789476	+	IGR	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	59845334	59845334	+	IGR	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79502294	79502294	+	IGR	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33402098	33402098	+	IGR	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33497821	33497821	+	IGR	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33661591	33661591	+	IGR	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15165381	15165381	+	IGR	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	12900902	12900902	+	IGR	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13219512	13219512	+	IGR	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149049369	149049369	+	IGR	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158725728	158725728	+	IGR	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242936145	242936145	+	IGR	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	59097062	59097062	+	IGR	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	126402	126402	+	IGR	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	39088909	39088910	+	IGR	DNP	AG	GA	GA			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10899812	10899812	+	IGR	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	111118996	111118996	+	IGR	DEL	C	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17466202	17466202	+	IGR	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	191459768	191459768	+	IGR	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	99944600	99944600	+	IGR	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117017227	117017227	+	IGR	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	168636965	168636965	+	IGR	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117055045	117055045	+	IGR	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180541584	180541584	+	IGR	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23304365	23304365	+	IGR	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	32523510	32523510	+	IGR	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75217360	75217360	+	IGR	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	25181741	25181741	+	IGR	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27705940	27705940	+	IGR	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66804640	66804640	+	IGR	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	81265839	81265839	+	IGR	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	86796049	86796049	+	IGR	SNP	T	C	C	rs142155867	by1000genomes	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	138126319	138126319	+	IGR	SNP	C	G	G	rs80281481		TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144703300	144703300	+	IGR	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152287995	152287995	+	IGR	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	51451048	51451048	+	IGR	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56356512	56356512	+	IGR	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56373232	56373232	+	IGR	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43528035	43528035	+	IGR	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	63056087	63056087	+	IGR	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	85074558	85074558	+	IGR	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43401331	43401331	+	IGR	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	142596414	142596414	+	IGR	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151073517	151073517	+	IGR	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	46278087	46278087	+	IGR	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78018930	78018930	+	IGR	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79815980	79815980	+	IGR	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89544471	89544471	+	IGR	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIP	7432	broad.mit.edu	37	6	153075271	153075271	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100352892	100352892	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK2	7444	broad.mit.edu	37	2	58313309	58313309	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85599265	85599265	+	Intron	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241953712	241953712	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR93	56964	broad.mit.edu	37	15	90276380	90276380	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT10A	80326	broad.mit.edu	37	2	219754906	219754906	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168106972	168106972	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC12	170261	broad.mit.edu	37	X	117960045	117960045	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT4	79698	broad.mit.edu	37	8	40532564	40532564	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF148	7707	broad.mit.edu	37	3	125032482	125032482	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF185	7739	broad.mit.edu	37	X	152097111	152097111	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF275	10838	broad.mit.edu	37	X	152613207	152613207	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF324B	388569	broad.mit.edu	37	19	58967159	58967159	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF44	51710	broad.mit.edu	37	19	12383596	12383596	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22836811	22836811	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22907500	22907500	+	Intron	SNP	T	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF543	125919	broad.mit.edu	37	19	57839445	57839445	+	Silent	SNP	G	C	C			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF644	84146	broad.mit.edu	37	1	91405243	91405243	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF658	26149	broad.mit.edu	37	9	40774257	40774257	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF732	654254	broad.mit.edu	37	4	283982	283982	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF839	55778	broad.mit.edu	37	14	102798180	102798180	+	Silent	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF85	7639	broad.mit.edu	37	19	21132503	21132503	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZYG11B	79699	broad.mit.edu	37	1	53262332	53262332	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	113661455	113661455	+	RNA	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	74564684	74564684	+	Intron	SNP	G	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159943661	159943661	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	179556993	179556993	+	5'Flank	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131459944	131459944	+	RNA	SNP	A	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89231369	89231369	+	Intron	SNP	C	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90139412	90139412	+	RNA	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	187250098	187250098	+	Intron	SNP	A	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33970086	33970086	+	Intron	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38380638	38380638	+	5'Flank	SNP	T	G	G			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	34133404	34133404	+	RNA	SNP	G	T	T			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90747696	90747696	+	Intron	SNP	C	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
