Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
COL11A1	1301	broad.mit.edu	36	1	103242778	103242778	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	103242778	103242778	COL11A1	1	C	C	T	24
TDRD5	163589	broad.mit.edu	36	1	177875804	177875804	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	177875804	177875804	TDRD5	1	C	C	T	30
TPR	7175	broad.mit.edu	36	1	184579221	184579221	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	184579221	184579221	TPR	1	G	G	A	40
HNRNPU	3192	broad.mit.edu	36	1	243093737	243093737	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	243093737	243093737	HNRNPU	1	G	G	A	42
ITIH5	80760	broad.mit.edu	36	10	7648321	7648321	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7648321	7648321	ITIH5	10	C	C	G	32
PCDH15	65217	broad.mit.edu	36	10	55252095	55252095	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	55252095	55252095	PCDH15	10	G	G	A	39
RHOG	391	broad.mit.edu	36	11	3805821	3805821	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3805821	3805821	RHOG	11	C	C	A	27
CREB3L1	90993	broad.mit.edu	36	11	46291044	46291044	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	46291044	46291044	CREB3L1	11	C	C	T	17
C12orf40	283461	broad.mit.edu	36	12	38362935	38362935	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	38362935	38362935	C12orf40	12	G	G	A	41
BAG5	9529	broad.mit.edu	36	14	103096557	103096557	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	103096557	103096557	BAG5	14	C	C	G	25
LCAT	3931	broad.mit.edu	36	16	66531739	66531739	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	66531739	66531739	LCAT	16	T	T	C	59
WDR59	79726	broad.mit.edu	36	16	73477795	73477795	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73477795	73477795	WDR59	16	G	G	A	38
ZFPM1	161882	broad.mit.edu	36	16	87128759	87128759	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	87128759	87128759	ZFPM1	16	G	G	C	38
TP53	7157	broad.mit.edu	36	17	7517610	7517610	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	7517610	7517610	TP53	17	T	T	A	62
ALKBH5	54890	broad.mit.edu	36	17	18028803	18028803	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	18028803	18028803	ALKBH5	17	A	A	G	5
CARD14	79092	broad.mit.edu	36	17	75783598	75783598	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	75783598	75783598	CARD14	17	C	C	T	31
CD22	933	broad.mit.edu	36	19	40520658	40520658	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	40520658	40520658	CD22	19	G	G	A	38
ZNF227	7770	broad.mit.edu	36	19	49431597	49431597	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49431597	49431597	ZNF227	19	A	A	G	11
SIGLEC11	114132	broad.mit.edu	36	19	55154478	55154478	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	55154478	55154478	SIGLEC11	19	C	C	T	23
DUXA	503835	broad.mit.edu	36	19	62358493	62358493	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	62358493	62358493	DUXA	19	C	C	T	19
CNTNAP5	129684	broad.mit.edu	36	2	125238037	125238037	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	125238037	125238037	CNTNAP5	2	C	C	T	19
SCN7A	6332	broad.mit.edu	36	2	166970365	166970365	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	166970365	166970365	SCN7A	2	C	C	T	30
HAT1	8520	broad.mit.edu	36	2	172487265	172487265	+	Splice_Site_SNP	SNP	T	T	G	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	172487265	172487265	HAT1	2	T	T	G	57
ADAM23	8745	broad.mit.edu	36	2	207132936	207132936	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	207132936	207132936	ADAM23	2	C	C	T	25
STX16	8675	broad.mit.edu	36	20	56684661	56684661	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	56684661	56684661	STX16	20	C	C	T	29
POFUT2	23275	broad.mit.edu	36	21	45530176	45530176	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	45530176	45530176	POFUT2	21	G	G	T	40
PPM1F	9647	broad.mit.edu	36	22	20615650	20615650	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	20615650	20615650	PPM1F	22	C	C	A	26
NEFH	4744	broad.mit.edu	36	22	28209555	28209555	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	28209555	28209555	NEFH	22	T	T	A	54
ACAD9	28976	broad.mit.edu	36	3	130111556	130111556	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	130111556	130111556	ACAD9	3	C	C	G	21
PCDH18	54510	broad.mit.edu	36	4	138671431	138671431	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	138671431	138671431	PCDH18	4	G	G	T	42
C7	730	broad.mit.edu	36	5	41017274	41017274	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	41017274	41017274	C7	5	C	C	T	23
CCL28	56477	broad.mit.edu	36	5	43417739	43417739	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43417739	43417739	CCL28	5	C	C	T	23
PPP2CA	5515	broad.mit.edu	36	5	133569679	133569679	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	133569679	133569679	PPP2CA	5	G	G	A	37
SAP30L	79685	broad.mit.edu	36	5	153813248	153813248	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	153813248	153813248	SAP30L	5	G	G	T	34
FIG4	9896	broad.mit.edu	36	6	110224724	110224724	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	110224724	110224724	FIG4	6	G	G	T	44
KIAA1539	80256	broad.mit.edu	36	9	35096541	35096541	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	35096541	35096541	KIAA1539	9	G	G	C	36
ASTN2	23245	broad.mit.edu	36	9	119016679	119016679	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	119016679	119016679	ASTN2	9	C	C	T	23
ZNF41	7592	broad.mit.edu	36	X	47193127	47193127	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47193127	47193127	ZNF41	23	C	C	A	17
PJA1	64219	broad.mit.edu	36	X	68297918	68297918	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	68297918	68297918	PJA1	23	C	C	A	26
TEX13A	56157	broad.mit.edu	36	X	104350948	104350948	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	104350948	104350948	TEX13A	23	C	C	G	32
NEK8	284086	broad.mit.edu	36	17	24088800	24088837	+	Splice_Site_Del	DEL	GGCCCCCATCTGTCCTGCAGGGCAGAGAAGTCCGTGGC	-	GGCCCCCATCTGTCCTGCAGGGCAGAGAAGTCCGTGGC	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Splice_Site_Del	DEL	24088800	24088837	NEK8	17	GGCCCCCATCTGTCCTGCAGGGCAGAGAAGTCCGTGGC	-	GGCCCCCATCTGTCCTGCAGGGCAGAGAAGTCCGTGGC	35
CTSL1	1514	broad.mit.edu	36	9	89533085	89533085	+	Frame_Shift_Del	DEL	C	-	C	novel	Unknown	TCGA-24-2271-01	TCGA-24-2271-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	89533085	89533085	CTSL1	9	C	-	C	32
