Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AACS	65985	broad.mit.edu	37	12	125612687	125612687	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASDHPPT	60496	broad.mit.edu	37	11	105948530	105948530	+	Silent	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB10	23456	broad.mit.edu	37	1	229683401	229683401	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC1	4363	broad.mit.edu	37	16	16225762	16225762	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35692228	35692229	+	Intron	INS	-	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADS	35	broad.mit.edu	37	12	121175683	121175683	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS1	84532	broad.mit.edu	37	20	25003791	25003791	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21P1	145241	broad.mit.edu	37	14	70714505	70714505	+	5'UTR	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207482245	207482245	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106091049	106091049	+	RNA	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106926374	106926374	+	RNA	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107232244	107232244	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM9	8754	broad.mit.edu	37	8	38913071	38913082	+	Intron	DEL	TTTAATTTGAAT	-	-			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43945637	43945637	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105419327	105419327	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP5	9495	broad.mit.edu	37	14	64935712	64935712	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29498008	29498008	+	Silent	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56204800	56204800	+	Silent	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD3	272	broad.mit.edu	37	11	10527398	10527398	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKLE2	23141	broad.mit.edu	37	12	133318046	133318046	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD13C	81573	broad.mit.edu	37	1	70819665	70819665	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD16	54522	broad.mit.edu	37	10	5922263	5922263	+	Nonsense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARCN1	372	broad.mit.edu	37	11	118468445	118468445	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP42	143872	broad.mit.edu	37	11	100805055	100805055	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP42	143872	broad.mit.edu	37	11	100805059	100805059	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF15	22899	broad.mit.edu	37	17	8219171	8219171	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRDC2	27106	broad.mit.edu	37	19	18120660	18120660	+	Missense_Mutation	SNP	G	A	A	rs147746417		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119582873	119582873	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160141394	160141394	+	Silent	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1B2	526	broad.mit.edu	37	8	20061976	20061976	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B1	5205	broad.mit.edu	37	18	55321184	55321184	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142170968	142170968	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142171996	142171996	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN2	6311	broad.mit.edu	37	12	111893881	111893881	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11039022	11039022	+	3'UTR	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136582459	136582459	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRIP1	83990	broad.mit.edu	37	17	59760881	59760881	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A3	54718	broad.mit.edu	37	6	26426748	26426748	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf114	399726	broad.mit.edu	37	10	21785750	21785750	+	5'UTR	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf27	219793	broad.mit.edu	37	10	72532426	72532426	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33565250	33565250	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112600871	112600871	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112600874	112600874	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112605118	112605118	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf178	283579	broad.mit.edu	37	14	78235900	78235900	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QB	713	broad.mit.edu	37	1	22986043	22986043	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf186	440712	broad.mit.edu	37	1	206241647	206241647	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf49	84066	broad.mit.edu	37	1	178489899	178489899	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf74	148304	broad.mit.edu	37	1	209956824	209956824	+	Silent	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26678013	26678013	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf70	339778	broad.mit.edu	37	2	26799061	26799061	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165713014	165713014	+	Intron	SNP	C	T	T	rs75628737	by1000genomes	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf97	80129	broad.mit.edu	37	6	151859248	151859248	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf33	65265	broad.mit.edu	37	8	146278275	146278275	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181731863	181731863	+	Intron	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181732714	181732714	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81978994	81978994	+	Intron	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1984343	1984343	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62503733	62503733	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO1	57658	broad.mit.edu	37	12	54119004	54119004	+	Missense_Mutation	SNP	C	A	A	rs149998353	byFrequency	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN3	825	broad.mit.edu	37	15	42678468	42678468	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC5	57082	broad.mit.edu	37	15	40902476	40902476	+	Silent	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC144NL	339184	broad.mit.edu	37	17	20799042	20799042	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC150	284992	broad.mit.edu	37	2	197531457	197531457	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC97	90324	broad.mit.edu	37	19	41828552	41828552	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC97	90324	broad.mit.edu	37	19	41828555	41828555	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCHCR1	54535	broad.mit.edu	37	6	31110851	31110851	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCM2	83605	broad.mit.edu	37	7	45067234	45067234	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21751993	21751993	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH19	28513	broad.mit.edu	37	18	64235609	64235609	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59212284	59212284	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL1	8814	broad.mit.edu	37	14	50864021	50864021	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL5	6792	broad.mit.edu	37	X	18606111	18606111	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPI	2491	broad.mit.edu	37	X	100382593	100382593	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP350	9857	broad.mit.edu	37	1	180012116	180012116	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAF1B	8208	broad.mit.edu	37	21	37760059	37760059	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21897118	21897118	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB3	1142	broad.mit.edu	37	8	42552716	42552716	+	Silent	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHUK	1147	broad.mit.edu	37	10	101978567	101978567	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIDEA	1149	broad.mit.edu	37	18	12274208	12274208	+	Silent	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIITA	4261	broad.mit.edu	37	16	11016139	11016139	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87018985	87018985	+	Intron	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP2	55748	broad.mit.edu	37	18	72185926	72185926	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT6	57472	broad.mit.edu	37	5	179996441	179996441	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70852699	70852699	+	Missense_Mutation	SNP	C	A	A	rs143251981	byFrequency	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD10	51397	broad.mit.edu	37	5	115553788	115553788	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO1C	23603	broad.mit.edu	37	12	109051145	109051145	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE5	57699	broad.mit.edu	37	6	36790877	36790877	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211518752	211518752	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1A	1374	broad.mit.edu	37	11	68549256	68549256	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB5	9586	broad.mit.edu	37	7	28857804	28857804	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT1	55790	broad.mit.edu	37	8	19363303	19363303	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	33998577	33998577	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPG5	10675	broad.mit.edu	37	3	47610668	47610668	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTR9	9646	broad.mit.edu	37	11	10800443	10800443	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTRL	1506	broad.mit.edu	37	16	67963803	67963803	+	3'UTR	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL4A	8451	broad.mit.edu	37	13	113883759	113883759	+	Splice_Site	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL4A	8451	broad.mit.edu	37	13	113897452	113897452	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C19	1557	broad.mit.edu	37	10	96602808	96602808	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4B1	1580	broad.mit.edu	37	1	47278291	47278291	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	86067861	86067861	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST2	127579	broad.mit.edu	37	1	154991264	154991264	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST2	127579	broad.mit.edu	37	1	155001740	155001740	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN2	10540	broad.mit.edu	37	12	57929244	57929245	+	Intron	DEL	AC	-	-			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX23	9416	broad.mit.edu	37	12	49226375	49226375	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	85163541	85163541	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL2	23312	broad.mit.edu	37	15	51792347	51792347	+	Missense_Mutation	SNP	C	T	T	rs138911498		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21584806	21584806	+	Intron	SNP	C	G	G	rs10269946		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21630855	21630855	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196866436	196866436	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT1	1786	broad.mit.edu	37	19	10283905	10283905	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169144557	169144557	+	Intron	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169496915	169496915	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK5	55816	broad.mit.edu	37	20	53205055	53205055	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP3	10072	broad.mit.edu	37	11	66254836	66254836	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41741116	41741116	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28934418	28934418	+	Silent	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNB	1838	broad.mit.edu	37	2	25610108	25610108	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUPD1	338599	broad.mit.edu	37	10	76818123	76818123	+	Silent	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71839841	71839841	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB2	84288	broad.mit.edu	37	1	245250111	245250111	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79412033	79412033	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN3	90187	broad.mit.edu	37	20	39990047	39990047	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML2	24139	broad.mit.edu	37	19	46133262	46133262	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENO1	2023	broad.mit.edu	37	1	8934896	8934896	+	Silent	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142562397	142562398	+	Frame_Shift_Ins	INS	-	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142568267	142568267	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB3	2065	broad.mit.edu	37	12	56478753	56478753	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERLIN2	11160	broad.mit.edu	37	8	37607085	37607085	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216824354	216824354	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA2	2139	broad.mit.edu	37	20	45725888	45725888	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM126B	285172	broad.mit.edu	37	2	201927764	201927764	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13A	10144	broad.mit.edu	37	4	89660173	89660173	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13A	10144	broad.mit.edu	37	4	89660226	89660226	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190195450	190195450	+	Splice_Site	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM70A	55026	broad.mit.edu	37	X	119438435	119438435	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54806253	54806253	+	Silent	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM91A1	157769	broad.mit.edu	37	8	124797966	124797966	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157665172	157665172	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157667220	157667220	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157668079	157668079	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR1	2260	broad.mit.edu	37	8	38285345	38285345	+	Intron	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152323126	152323126	+	Nonsense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28919692	28919692	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN1	342184	broad.mit.edu	37	15	33304556	33304556	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL3	91010	broad.mit.edu	37	12	50044917	50044917	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNBP1L	54874	broad.mit.edu	37	1	93998699	93998699	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49196411	49196411	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLR4	390243	broad.mit.edu	37	11	94040706	94040706	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	113937325	113937325	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79351417	79351417	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRK	2444	broad.mit.edu	37	6	116360492	116360492	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCN3	29999	broad.mit.edu	37	7	127234028	127234028	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUBP3	8939	broad.mit.edu	37	9	133491925	133491925	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUCA1	2517	broad.mit.edu	37	1	24181064	24181064	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT8	2530	broad.mit.edu	37	14	66208847	66208847	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46314600	46314600	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9873091	9873091	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9885218	9885218	+	Intron	SNP	A	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT2	2651	broad.mit.edu	37	6	10586437	10586437	+	Intron	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF2	2658	broad.mit.edu	37	10	48414131	48414131	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM1	85476	broad.mit.edu	37	3	158402288	158402288	+	Intron	SNP	A	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT1	2673	broad.mit.edu	37	2	69573156	69573156	+	Intron	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGCT	79017	broad.mit.edu	37	7	30540138	30540138	+	Intron	SNP	T	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHSR	2693	broad.mit.edu	37	3	172165759	172165759	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC2	54810	broad.mit.edu	37	1	78509306	78509306	+	5'Flank	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLCE	26035	broad.mit.edu	37	15	69548421	69548421	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB1	2782	broad.mit.edu	37	1	1749262	1749262	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8DP	100132979	broad.mit.edu	37	15	22709902	22709902	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPD2	2820	broad.mit.edu	37	2	157367459	157367459	+	Intron	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR148	344561	broad.mit.edu	37	2	131486979	131486979	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25839895	25839895	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR85	54329	broad.mit.edu	37	7	112724255	112724255	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89943510	89943510	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	30949386	30949386	+	Silent	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37346391	37346391	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	145038046	145038046	+	Silent	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS6	54801	broad.mit.edu	37	9	19063617	19063617	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC7	51564	broad.mit.edu	37	12	48190974	48190974	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18989088	18989088	+	Intron	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236755306	236755306	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELQ	113510	broad.mit.edu	37	4	84352854	84352854	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM2	253012	broad.mit.edu	37	7	92821695	92821695	+	Intron	SNP	T	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC4	26091	broad.mit.edu	37	10	69721028	69721028	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGSNAT	138050	broad.mit.edu	37	8	43016642	43016642	+	Silent	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIBADH	11112	broad.mit.edu	37	7	27565834	27565834	+	Nonstop_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIPK4	147746	broad.mit.edu	37	19	40886395	40886395	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AA	221613	broad.mit.edu	37	6	25726495	25726495	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152190895	152190895	+	Silent	SNP	T	G	G	rs144504025	byFrequency	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA2	3306	broad.mit.edu	37	14	65008589	65008589	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFIT1B	439996	broad.mit.edu	37	10	91144396	91144396	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151164737	151164737	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29414538	29414538	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27457349	27457349	+	Silent	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL6R	3570	broad.mit.edu	37	1	154420621	154420621	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMMP1L	196294	broad.mit.edu	37	11	31477921	31477921	+	Silent	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5B	3633	broad.mit.edu	37	1	38348602	38348602	+	Intron	SNP	G	C	C	rs147875109	by1000genomes	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5F	22876	broad.mit.edu	37	10	121510631	121510631	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS12	57117	broad.mit.edu	37	4	106616825	106616825	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCA1	79781	broad.mit.edu	37	2	237272693	237272693	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCC	55721	broad.mit.edu	37	1	32672200	32672200	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAL1	3730	broad.mit.edu	37	X	8536381	8536381	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75442065	75442065	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62073706	62073706	+	Intron	SNP	G	A	A	rs144570836	by1000genomes	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53245042	53245042	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0317	9870	broad.mit.edu	37	14	75142464	75142464	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0355	9710	broad.mit.edu	37	19	34833289	34833289	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324	57535	broad.mit.edu	37	1	109716178	109716178	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324	57535	broad.mit.edu	37	1	109740087	109740087	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2013	90231	broad.mit.edu	37	1	11983606	11983606	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF27	55582	broad.mit.edu	37	9	86502017	86502017	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFC3	3801	broad.mit.edu	37	16	57805461	57805461	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55270351	55270351	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55270494	55270494	+	Intron	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL38	340359	broad.mit.edu	37	8	124665152	124665152	+	Silent	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL3	26249	broad.mit.edu	37	5	137056262	137056262	+	Missense_Mutation	SNP	C	G	G	rs138386996		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRC1	3821	broad.mit.edu	37	12	10599199	10599199	+	Nonsense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRC2	3822	broad.mit.edu	37	12	10583765	10583765	+	Nonsense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT38	8687	broad.mit.edu	37	17	39595502	39595503	+	Nonsense_Mutation	DNP	CC	AG	AG			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP1-3	81850	broad.mit.edu	37	17	39191008	39191009	+	Missense_Mutation	DNP	GG	AT	AT	rs71300033		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP1-3	81850	broad.mit.edu	37	17	39191048	39191048	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN12	286256	broad.mit.edu	37	9	139847406	139847406	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG3	3980	broad.mit.edu	37	17	33328387	33328387	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN52	91750	broad.mit.edu	37	14	74551687	74551687	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN7A	8825	broad.mit.edu	37	12	81242138	81242138	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100272228	100272228	broad.mit.edu	37	X	149284034	149284034	+	Intron	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC348926	348926	broad.mit.edu	37	4	3949798	3949798	+	RNA	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC441089	441089	broad.mit.edu	37	5	79647091	79647091	+	RNA	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442459	442459	broad.mit.edu	37	X	99142977	99142977	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC644669	644669	broad.mit.edu	37	18	15326002	15326002	+	5'Flank	SNP	C	A	A	rs140822172	by1000genomes	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91821719	91821719	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONP2	83752	broad.mit.edu	37	16	48368461	48368461	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160932173	160932173	+	5'Flank	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62812790	62812790	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42360651	42360651	+	Silent	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141299477	141299477	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC36	55282	broad.mit.edu	37	16	67384094	67384094	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN3	54674	broad.mit.edu	37	7	110764566	110764566	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77745477	77745477	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33505282	33505282	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEA	10296	broad.mit.edu	37	4	1309203	1309203	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA11	4110	broad.mit.edu	37	X	148798513	148798513	+	3'UTR	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA8	4107	broad.mit.edu	37	X	149013937	149013937	+	Silent	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140995615	140995615	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K5	11183	broad.mit.edu	37	14	50935437	50935437	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D2	256714	broad.mit.edu	37	X	20043822	20043822	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D3	79649	broad.mit.edu	37	X	135301892	135301892	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKBP1	23005	broad.mit.edu	37	15	42108784	42108784	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168867383	168867383	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED1	5469	broad.mit.edu	37	17	37564803	37564803	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD2A	84879	broad.mit.edu	37	1	40422655	40422655	+	Intron	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT4C	25834	broad.mit.edu	37	12	86373302	86373302	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGST3	4259	broad.mit.edu	37	1	165620345	165620345	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR516B2	574485	broad.mit.edu	37	19	54228705	54228705	+	RNA	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR941-1	100126329	broad.mit.edu	37	20	62550847	62550847	+	RNA	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLF1	4291	broad.mit.edu	37	3	158311211	158311211	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151917783	151917783	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT10	8028	broad.mit.edu	37	10	21914514	21914514	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP14	4323	broad.mit.edu	37	14	23311752	23311752	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMS19	64210	broad.mit.edu	37	10	99238086	99238086	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS3	27304	broad.mit.edu	37	20	49575810	49575810	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10L1	54456	broad.mit.edu	37	22	50582592	50582592	+	Missense_Mutation	SNP	G	T	T	rs147541728		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTERFD1	51001	broad.mit.edu	37	8	97256325	97256325	+	Intron	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237023294	237023294	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTSS1	9788	broad.mit.edu	37	8	125580618	125580618	+	Splice_Site	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8966817	8966817	+	Splice_Site	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9010589	9010589	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUM1L1	139221	broad.mit.edu	37	X	105450161	105450161	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC1	4604	broad.mit.edu	37	12	102071209	102071209	+	Intron	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10212691	10212691	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10409227	10409227	+	Silent	SNP	A	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLPF	29895	broad.mit.edu	37	16	30387879	30387879	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78452814	78452814	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78570344	78570344	+	Intron	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16890761	16890761	+	Intron	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144168520	144168520	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134048744	134048744	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFL	4747	broad.mit.edu	37	8	24810240	24810240	+	3'UTR	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIA	4774	broad.mit.edu	37	1	61818168	61818168	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55481465	55481465	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56467063	56467063	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NONO	4841	broad.mit.edu	37	X	70518413	70518413	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1AP	9722	broad.mit.edu	37	1	162326690	162326690	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115364439	115364439	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG2	84628	broad.mit.edu	37	9	135073529	135073530	+	Missense_Mutation	DNP	CG	AA	AA			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88524565	88524565	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163295790	163295790	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP153	9972	broad.mit.edu	37	6	17632972	17632972	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102332421	102332421	+	Intron	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCEL1	79629	broad.mit.edu	37	19	17339045	17339047	+	Intron	DEL	TTC	-	-			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ONECUT2	9480	broad.mit.edu	37	18	55143772	55143772	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPHN1	4983	broad.mit.edu	37	X	67518843	67518843	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248402705	248402705	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T4	127074	broad.mit.edu	37	1	248525348	248525348	+	Missense_Mutation	SNP	G	A	A	rs141849195	byFrequency	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A5	81318	broad.mit.edu	37	11	51411989	51411989	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51A2	401667	broad.mit.edu	37	11	4976704	4976705	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D18	219438	broad.mit.edu	37	11	55587679	55587679	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH2	341277	broad.mit.edu	37	11	7718296	7718296	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX6	9127	broad.mit.edu	37	22	21377428	21377428	+	Silent	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY4	5030	broad.mit.edu	37	X	69478529	69478529	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK1IP1	55003	broad.mit.edu	37	6	10695300	10695300	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANK3	79646	broad.mit.edu	37	5	167995708	167995708	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARG	8505	broad.mit.edu	37	10	51093144	51093144	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARN	5073	broad.mit.edu	37	16	14645891	14645891	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP1	142	broad.mit.edu	37	1	226550782	226550782	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA10	56139	broad.mit.edu	37	5	140236393	140236393	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB3	56132	broad.mit.edu	37	5	140481829	140481829	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA11	56105	broad.mit.edu	37	5	140801351	140801351	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56138667	56138667	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82595703	82595703	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCM1	5108	broad.mit.edu	37	8	17813044	17813044	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE2	26577	broad.mit.edu	37	3	142546379	142546379	+	Intron	SNP	A	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178762821	178762821	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4A	5141	broad.mit.edu	37	19	10565641	10565641	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDLIM3	27295	broad.mit.edu	37	4	186423409	186423409	+	3'UTR	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57327147	57327147	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PELP1	27043	broad.mit.edu	37	17	4575522	4575522	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHB2	11331	broad.mit.edu	37	12	7077178	7077178	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHC3	80012	broad.mit.edu	37	3	169899448	169899449	+	Intron	INS	-	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133848837	133848837	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA1A	51365	broad.mit.edu	37	3	119327819	119327819	+	Intron	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144994218	144994218	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD2	5352	broad.mit.edu	37	3	145799492	145799492	+	Intron	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNCK	139728	broad.mit.edu	37	X	152937028	152937028	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POC5	134359	broad.mit.edu	37	5	74981288	74981288	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133257827	133257827	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLK	51426	broad.mit.edu	37	5	74865234	74865234	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3B	55703	broad.mit.edu	37	12	106890582	106890582	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19563533	19563533	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAPDC1A	196051	broad.mit.edu	37	10	122334782	122334782	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF1	5475	broad.mit.edu	37	X	18768133	18768133	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81762875	81762875	+	Intron	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIF	10105	broad.mit.edu	37	10	81112122	81112122	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5B	5526	broad.mit.edu	37	11	64699106	64699106	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5E	5529	broad.mit.edu	37	14	63888788	63888788	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R4	57718	broad.mit.edu	37	14	94733329	94733329	+	Silent	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREP	5550	broad.mit.edu	37	6	105733566	105733566	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAG1	5571	broad.mit.edu	37	12	49398423	49398423	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53822251	53822251	+	Intron	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR19	284338	broad.mit.edu	37	19	42813884	42813884	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR21	643905	broad.mit.edu	37	2	240982137	240982137	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43687653	43687653	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD11	5717	broad.mit.edu	37	17	30804536	30804536	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2	5747	broad.mit.edu	37	8	141774265	141774265	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXN	5829	broad.mit.edu	37	12	120650309	120650309	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB38	23682	broad.mit.edu	37	11	87847070	87847070	+	3'UTR	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3IL1	5866	broad.mit.edu	37	11	61674928	61674928	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17699059	17699059	+	Silent	SNP	A	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG1	5896	broad.mit.edu	37	11	36596881	36596881	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178745932	178745932	+	Silent	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS4	5999	broad.mit.edu	37	1	163043993	163043993	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHEB	6009	broad.mit.edu	37	7	151174480	151174480	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOBTB3	22836	broad.mit.edu	37	5	95091086	95091086	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOBTB3	22836	broad.mit.edu	37	5	95091260	95091260	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104922405	104922405	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPPLY1	92129	broad.mit.edu	37	X	106144762	106144762	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF20	56254	broad.mit.edu	37	9	104323505	104323505	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21811148	21811148	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL19	6143	broad.mit.edu	37	17	37358692	37358692	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL9	6133	broad.mit.edu	37	4	39459305	39459305	+	Intron	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP2	122042	broad.mit.edu	37	13	32349457	32349457	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237954725	237954725	+	Intron	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A8	6279	broad.mit.edu	37	1	153362789	153362789	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAMP3	10067	broad.mit.edu	37	1	155230148	155230148	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAND3	114821	broad.mit.edu	37	6	28542753	28542753	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAP	22937	broad.mit.edu	37	3	47468562	47468562	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	166019346	166019346	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4116733	4116733	+	Silent	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4198173	4198173	+	Silent	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84644551	84644551	+	Intron	SNP	A	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95033273	95033273	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61562418	61562418	+	Intron	SNP	A	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135173781	135173781	+	Intron	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC4	399694	broad.mit.edu	37	15	49118045	49118045	+	3'UTR	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC4	399694	broad.mit.edu	37	15	49118082	49118082	+	3'UTR	SNP	A	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM4	57477	broad.mit.edu	37	X	50350944	50350944	+	Silent	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIAE	54414	broad.mit.edu	37	11	124539239	124539239	+	Intron	DEL	A	-	-			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIDT2	51092	broad.mit.edu	37	11	117050024	117050024	+	Silent	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC9	27180	broad.mit.edu	37	19	51633160	51633160	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIK2	23235	broad.mit.edu	37	11	111583037	111583037	+	Missense_Mutation	SNP	C	G	G	rs139007229	byFrequency	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKIV2L2	23517	broad.mit.edu	37	5	54649065	54649065	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A2	6565	broad.mit.edu	37	3	121648154	121648154	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A4	10050	broad.mit.edu	37	6	25778016	25778016	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22387212	22387212	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A3	6572	broad.mit.edu	37	10	50819359	50819359	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A8	116369	broad.mit.edu	37	6	35919285	35919285	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A6	55676	broad.mit.edu	37	2	32422496	32422496	+	Intron	SNP	T	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35A5	55032	broad.mit.edu	37	3	112299565	112299565	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A10	285335	broad.mit.edu	37	3	111870756	111870756	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21242939	21242939	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20874949	20874949	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144905709	144905709	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLMAP	7871	broad.mit.edu	37	3	57850452	57850452	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD3	4088	broad.mit.edu	37	15	67473637	67473637	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG6	23293	broad.mit.edu	37	17	2200651	2200651	+	Intron	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS2	8470	broad.mit.edu	37	4	186544260	186544260	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOS1	6654	broad.mit.edu	37	2	39325479	39325479	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231117274	231117274	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG9	9043	broad.mit.edu	37	17	49075774	49075774	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	123900467	123900467	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATS1	221409	broad.mit.edu	37	6	44344043	44344043	+	Intron	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE7P	441251	broad.mit.edu	37	7	72334884	72334884	+	RNA	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN2	6712	broad.mit.edu	37	11	66472402	66472402	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP68	6730	broad.mit.edu	37	17	74046574	74046574	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP68	6730	broad.mit.edu	37	17	74046604	74046604	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRT	51593	broad.mit.edu	37	7	100473152	100473152	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX7	280658	broad.mit.edu	37	X	52676931	52676931	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53092580	53092580	+	Intron	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA1	6489	broad.mit.edu	37	12	22354963	22354963	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK24	8428	broad.mit.edu	37	13	99105474	99105477	+	Intron	DEL	AGAG	-	-	rs113209502		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK25	10494	broad.mit.edu	37	2	242438432	242438432	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOML3	161003	broad.mit.edu	37	13	39540914	39540914	+	3'UTR	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP4	252983	broad.mit.edu	37	17	53155556	53155559	+	Splice_Site	DEL	GTAA	-	-			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUOX	6821	broad.mit.edu	37	12	56397873	56397873	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152680536	152680536	+	Missense_Mutation	SNP	C	A	A	rs139823841	by1000genomes	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNGAP1	8831	broad.mit.edu	37	6	33400452	33400453	+	Intron	INS	-	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TADA2A	6871	broad.mit.edu	37	17	35830621	35830621	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF3	83860	broad.mit.edu	37	10	8007006	8007006	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF9	6880	broad.mit.edu	37	5	68660768	68660768	+	3'UTR	SNP	G	C	C	rs138549217		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160051028	160051028	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBR1	10716	broad.mit.edu	37	2	162273111	162273111	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEANC	170082	broad.mit.edu	37	X	13680667	13680667	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF19	6941	broad.mit.edu	37	6	31129531	31129531	+	Silent	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF7	6932	broad.mit.edu	37	5	133477970	133477970	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152083948	152083948	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP10L2	401285	broad.mit.edu	37	6	167587449	167587449	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP1	6950	broad.mit.edu	37	6	160206484	160206484	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20871615	20871615	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM2	7052	broad.mit.edu	37	20	36760911	36760911	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM3	7053	broad.mit.edu	37	20	2290900	2290900	+	Silent	SNP	G	A	A	rs140997555		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169629774	169629774	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM225	338661	broad.mit.edu	37	11	123754943	123754943	+	Intron	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94767165	94767165	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42683242	42683242	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578455	7578455	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579536	7579545	+	Frame_Shift_Del	DEL	CAATATCGTC	-	-			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113711320	113711320	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2P3	220115	broad.mit.edu	37	13	53106051	53106051	+	Intron	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10942694	10942694	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP3	80342	broad.mit.edu	37	1	209949129	209949129	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42224500	42224500	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	73012628	73012628	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT5	57570	broad.mit.edu	37	14	61446167	61446167	+	Missense_Mutation	SNP	G	C	C	rs146315661		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72967797	72967797	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSFM	10102	broad.mit.edu	37	12	58177112	58177112	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31767488	31767488	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC26	79989	broad.mit.edu	37	7	138818498	138818498	+	5'UTR	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7A	57217	broad.mit.edu	37	2	47221537	47221537	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTPA	7274	broad.mit.edu	37	8	63985409	63985409	+	Intron	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBD1	51174	broad.mit.edu	37	17	57958547	57958547	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TWISTNB	221830	broad.mit.edu	37	7	19738310	19738310	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TWISTNB	221830	broad.mit.edu	37	7	19739839	19739839	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103341705	103341705	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A2	167127	broad.mit.edu	37	5	36037956	36037956	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215853474	215853474	+	Intron	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXS1	80146	broad.mit.edu	37	2	106761628	106761628	+	Intron	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	118342384	118342384	+	IGR	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	39932854	39932854	+	IGR	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	21866919	21866919	+	IGR	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68406748	68406748	+	IGR	SNP	A	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90644587	90644587	+	IGR	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806745	19806745	+	IGR	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21304350	21304350	+	IGR	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	78526541	78526541	+	IGR	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20148663	20148663	+	IGR	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30337515	30337515	+	IGR	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60060541	60060541	+	IGR	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79961365	79961365	+	IGR	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	86502055	86502055	+	IGR	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33630085	33630085	+	IGR	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	40225974	40225975	+	IGR	INS	-	C	C	rs141065968	by1000genomes	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51759448	51759448	+	IGR	SNP	A	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15165552	15165552	+	IGR	SNP	G	A	A	rs141819943	by1000genomes	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57817195	57817195	+	IGR	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	6463010	6463010	+	IGR	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	16823205	16823205	+	IGR	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22497930	22497930	+	IGR	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106436088	106436088	+	IGR	SNP	A	G	G	rs1811533	by1000genomes	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158495524	158495524	+	IGR	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10367441	10367441	+	IGR	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12361206	12361206	+	IGR	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14899699	14899699	+	IGR	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123309	16123309	+	IGR	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16414274	16414274	+	IGR	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	38437251	38437251	+	IGR	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117444946	117444946	+	IGR	SNP	A	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	158067878	158067878	+	IGR	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194141784	194141784	+	IGR	SNP	C	A	A	rs114452196	by1000genomes	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96243124	96243124	+	IGR	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	121288936	121288937	+	IGR	INS	-	GAA	GAA	rs146373610	by1000genomes	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	121007314	121007314	+	IGR	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154870916	154870916	+	IGR	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	157117105	157117105	+	IGR	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	76841335	76841335	+	IGR	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	98869656	98869657	+	IGR	DNP	GG	TT	TT			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	143664462	143664462	+	IGR	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	145468824	145468824	+	IGR	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	41635395	41635395	+	IGR	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	7481884	7481884	+	IGR	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136399768	136399768	+	IGR	SNP	G	T	T	rs111614174		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	139188654	139188654	+	IGR	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	149031254	149031254	+	IGR	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53070738	53070738	+	IGR	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54487790	54487790	+	IGR	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57245110	57245110	+	IGR	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	92071572	92071573	+	IGR	DNP	GG	AT	AT			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134338661	134338661	+	IGR	SNP	A	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138709492	138709492	+	IGR	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	74827129	74827129	+	IGR	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	82167313	82167313	+	IGR	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	90426960	90426960	+	IGR	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	97080929	97080929	+	IGR	SNP	T	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	36003809	36003809	+	IGR	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84703128	84703128	+	IGR	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144713099	144713099	+	IGR	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25268318	25268318	+	IGR	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241959542	241959542	+	Intron	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR65	149465	broad.mit.edu	37	1	43650736	43650736	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37506991	37506991	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR92	116143	broad.mit.edu	37	2	68358606	68358606	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XAB2	56949	broad.mit.edu	37	19	7692716	7692716	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128890409	128890409	+	Intron	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YME1L1	10730	broad.mit.edu	37	10	27408100	27408100	+	Intron	SNP	T	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H15	55854	broad.mit.edu	37	2	187370372	187370372	+	Intron	SNP	A	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC9	84240	broad.mit.edu	37	5	80608439	80608439	+	Silent	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC16	84287	broad.mit.edu	37	10	99212147	99212147	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC23	254887	broad.mit.edu	37	3	113673059	113673059	+	Missense_Mutation	SNP	C	T	T	rs147787442		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77619868	77619868	+	Nonsense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP112	7771	broad.mit.edu	37	19	44831777	44831777	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM3	114026	broad.mit.edu	37	19	57646337	57646337	+	Silent	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZKSCAN3	80317	broad.mit.edu	37	6	28331628	28331628	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF167	55888	broad.mit.edu	37	3	44621874	44621874	+	Intron	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF167	55888	broad.mit.edu	37	3	44621983	44621983	+	Intron	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF225	7768	broad.mit.edu	37	19	44622435	44622435	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64159246	64159246	+	Intron	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF416	55659	broad.mit.edu	37	19	58085147	58085147	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF425	155054	broad.mit.edu	37	7	148801601	148801601	+	Silent	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF444	55311	broad.mit.edu	37	19	56669884	56669884	+	Missense_Mutation	SNP	G	A	A	rs61736532	byFrequency	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF485	220992	broad.mit.edu	37	10	44101181	44101181	+	5'Flank	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF503	84858	broad.mit.edu	37	10	77160865	77160865	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF525	170958	broad.mit.edu	37	19	53884192	53884192	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF568	374900	broad.mit.edu	37	19	37441464	37441464	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF571	51276	broad.mit.edu	37	19	38055625	38055625	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF768	79724	broad.mit.edu	37	16	30548666	30548666	+	5'Flank	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238050909	238050909	+	Intron	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30928177	30928177	+	RNA	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	31099329	31099329	+	Intron	SNP	T	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22392874	22392874	+	Intron	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148887802	148887802	+	Intron	SNP	A	C	C			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	8178564	8178564	+	Intron	SNP	A	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57698441	57698441	+	5'Flank	SNP	C	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86568205	86568205	+	5'Flank	SNP	G	A	A			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43844410	43844410	+	Intron	SNP	C	T	T			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
