Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ARC	0	genome.wustl.edu	37	8	143695260	143695260	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	8	143695260	143695260	G	A	SNP	ARC	ENST00000356613	human	ensembl	69_37n	-1	known	missense	c.373	p.R125C	0.742	prints_Activity-reg_cytoskelet-assoc	prints_Activity-reg_cytoskelet-assoc	-	no_errors	ARC	HGNC	ENSG00000198576	16	0	0.00	11	4	26.67	-	-	-
BPIFB3	0	genome.wustl.edu	37	20	31656715	31656715	+	Missense_Mutation	SNP	C	C	A			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	20	31656715	31656715	C	A	SNP	BPIFB3	ENST00000375494	human	ensembl	69_37n	+1	known	missense	c.1085	p.A362D	0.362	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB3	HGNC	ENSG00000186190	108	1	0.92	34	4	10.53	-	-	-
C2orf73	0	genome.wustl.edu	37	2	54587645	54587645	+	Silent	SNP	T	T	C			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	2	54587645	54587645	T	C	SNP	C2orf73	ENST00000398634	human	ensembl	69_37n	+1	known	silent	c.810	p.D270	0.000	NULL	NULL	-	no_errors	C2orf73	HGNC	ENSG00000177994	38	0	0.00	25	6	19.35	-	-	-
CECR2	0	genome.wustl.edu	37	22	18028506	18028506	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	22	18028506	18028506	C	T	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	+1	novel	missense	c.3463	p.R1155C	0.994	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	101	0	0.00	41	16	28.07	-	-	-
CEP290	0	genome.wustl.edu	37	12	88472999	88472999	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	12	88472999	88472999	C	T	SNP	CEP290	ENST00000309041	human	ensembl	69_37n	-1	known	missense	c.5240	p.S1747N	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	80	0	0.00	35	24	40.68	-	-	-
CSMD2	0	genome.wustl.edu	37	1	34090712	34090712	+	Silent	SNP	G	G	A			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	1	34090712	34090712	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	silent	c.5439	p.I1813	0.008	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	35	0	0.00	17	5	22.73	-	-	-
DSCAM	0	genome.wustl.edu	37	21	41719645	41719645	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	21	41719645	41719645	G	A	SNP	DSCAM	ENST00000400454	human	ensembl	69_37n	-1	known	missense	c.1162	p.R388C	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC	ENSG00000171587	157	0	0.00	59	22	27.16	-	-	-
DYSF	0	genome.wustl.edu	37	2	71827844	71827844	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	2	71827844	71827844	T	-	DEL	DYSF	ENST00000413539	human	ensembl	69_37n	+1	known	frame_shift_del	c.3808	p.F1270fs	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	29	0	0.00	8	2	20.00	-	-	-
ERN1	0	genome.wustl.edu	37	17	62130251	62130251	+	Silent	SNP	G	G	A			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	17	62130251	62130251	G	A	SNP	ERN1	ENST00000433197	human	ensembl	69_37n	-1	known	silent	c.2142	p.L714	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_KEN_RNase_activator,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN1	HGNC	ENSG00000178607	90	0	0.00	18	15	45.45	-	-	-
EWSR1	0	genome.wustl.edu	37	22	29694792	29694792	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	22	29694792	29694792	G	C	SNP	EWSR1	ENST00000414183	human	ensembl	69_37n	+1	known	missense	c.1502	p.G501A	1.000	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	EWSR1	HGNC	ENSG00000182944	94	0	0.00	16	14	46.67	-	-	-
FAT2	0	genome.wustl.edu	37	5	150922760	150922760	+	Missense_Mutation	SNP	A	A	T			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	5	150922760	150922760	A	T	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.7928	p.V2643D	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	76	0	0.00	25	11	30.56	-	-	-
FRMD4A	0	genome.wustl.edu	37	10	13852832	13852832	+	Missense_Mutation	SNP	A	A	G			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	10	13852832	13852832	A	G	SNP	FRMD4A	ENST00000357447	human	ensembl	69_37n	-1	known	missense	c.188	p.I63T	0.999	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	82	0	0.00	31	10	24.39	-	-	-
GRM7	0	genome.wustl.edu	37	3	7620374	7620374	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	3	7620374	7620374	C	T	SNP	GRM7	ENST00000402647	human	ensembl	69_37n	+1	known	missense	c.1781	p.P594L	1.000	pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277	76	0	0.00	25	16	39.02	-	-	-
HDAC2	0	genome.wustl.edu	37	6	114292110	114292112	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	6	114292110	114292112	CTG	-	DEL	HDAC2	ENST00000398283	human	ensembl	69_37n	-1	known	in_frame_del	c.245_243	p.S81in_frame_del	0.004:0.002:0.001	NULL	pfam_His_deacetylse_dom,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC2	HGNC	ENSG00000196591	19	0	0.00	2	2	50.00	-	-	-
HSD17B4	0	genome.wustl.edu	37	5	118835164	118835164	+	Silent	SNP	C	C	T			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	5	118835164	118835164	C	T	SNP	HSD17B4	ENST00000256216	human	ensembl	69_37n	+1	known	silent	c.1125	p.P375	0.993	NULL	pfam_MaoC_deHydtase,pfam_DH_sc/Rdtase_SDR,pfam_SCP2_sterol-bd_dom,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B4	HGNC	ENSG00000133835	112	0	0.00	40	18	31.03	-	-	-
IGKV3-15	0	genome.wustl.edu	37	2	89385160	89385160	+	Silent	SNP	G	G	A			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	2	89385160	89385160	G	A	SNP	IGKV3-15	ENST00000390252	human	ensembl	69_37n	-1	known	silent	c.27	p.F9	0.791	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGKV3-15	HGNC	ENSG00000244437	51	0	0.00	20	6	23.08	-	-	-
ILVBL	0	genome.wustl.edu	37	19	15226086	15226086	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	19	15226086	15226086	G	-	DEL	ILVBL	ENST00000263383	human	ensembl	69_37n	-1	known	frame_shift_del	c.1876	p.R626fs	1.000	NULL	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_TPP_enzyme-bd_C,pfam_Thiamin_PyroP_enz_cen_dom	-	no_errors	ILVBL	HGNC	ENSG00000105135	63	0	0.00	17	2	10.53	-	-	-
KRTAP13-2	0	genome.wustl.edu	37	21	31744287	31744287	+	Missense_Mutation	SNP	C	C	A			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	21	31744287	31744287	C	A	SNP	KRTAP13-2	ENST00000399889	human	ensembl	69_37n	-1	known	missense	c.245	p.R82L	0.321	pfam_PMG	pfam_PMG	-	no_errors	KRTAP13-2	HGNC	ENSG00000182816	146	0	0.00	54	20	27.03	-	-	-
LMO3	0	genome.wustl.edu	37	12	16713405	16713405	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	12	16713405	16713405	G	C	SNP	LMO3	ENST00000541295	human	ensembl	69_37n	-1	known	missense	c.328	p.R110G	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO3	HGNC	ENSG00000048540	124	0	0.00	44	16	26.67	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56178135	56178136	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	5	56178135	56178136	-	A	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_ins	c.3108_3109	p.D1037fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	63	0	0.00	14	10	41.67	-	-	-
MED12	0	genome.wustl.edu	37	X	70361800	70361800	+	Missense_Mutation	SNP	A	A	G			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	X	70361800	70361800	A	G	SNP	MED12	ENST00000333646	human	ensembl	69_37n	+1	known	missense	c.6485	p.Q2162R	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	113	0	0.00	24	18	42.86	-	-	-
MIS12	0	genome.wustl.edu	37	17	5392578	5392578	+	Missense_Mutation	SNP	A	A	T			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	17	5392578	5392578	A	T	SNP	MIS12	ENST00000381165	human	ensembl	69_37n	+1	known	missense	c.396	p.L132F	0.000	pfam_Centromere_Mis12	pfam_Centromere_Mis12	-	no_errors	MIS12	HGNC	ENSG00000167842	74	0	0.00	30	21	41.18	-	-	-
MMP15	0	genome.wustl.edu	37	16	58074022	58074022	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	16	58074022	58074022	C	-	DEL	MMP15	ENST00000219271	human	ensembl	69_37n	+1	known	frame_shift_del	c.684	p.L229fs	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP15	HGNC	ENSG00000102996	33	0	0.00	6	2	25.00	-	-	-
MRPL46	0	genome.wustl.edu	37	15	89008087	89008087	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	15	89008087	89008087	G	A	SNP	MRPL46	ENST00000312475	human	ensembl	69_37n	-1	known	nonsense	c.436	p.R146*	0.746	NULL	pfam_Ribosomal_L46,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	MRPL46	Clone_based_vega_gene	ENSG00000259494	81	0	0.00	41	16	28.07	-	-	-
NAV3	0	genome.wustl.edu	37	12	78569098	78569098	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	12	78569098	78569098	G	A	SNP	NAV3	ENST00000397909	human	ensembl	69_37n	+1	known	missense	c.4994	p.R1665K	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	125	0	0.00	51	29	36.25	-	-	-
PADI2	0	genome.wustl.edu	37	1	17419026	17419026	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	1	17419026	17419026	G	C	SNP	PADI2	ENST00000375486	human	ensembl	69_37n	-1	known	missense	c.532	p.L178V	1.000	pfam_Prot_Arg_deaminase_cen_dom,superfamily_Prot_Arg_deaminase_cen_dom,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115	69	0	0.00	20	6	23.08	-	-	-
PPID	0	genome.wustl.edu	37	4	159640438	159640438	+	Missense_Mutation	SNP	A	A	C			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	4	159640438	159640438	A	C	SNP	PPID	ENST00000307720	human	ensembl	69_37n	-1	known	missense	c.227	p.I76S	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPID	HGNC	ENSG00000171497	116	0	0.00	65	27	29.35	-	-	-
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037843	10037843	+	RNA	SNP	C	C	T			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	Y	10037843	10037843	C	T	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705	38	0	0.00	13	4	23.53	-	-	-
SCN7A	0	genome.wustl.edu	37	2	167263066	167263066	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	2	167263066	167263066	C	T	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.4073	p.R1358H	0.996	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	26	0	0.00	11	4	26.67	-	-	-
SLC29A2	0	genome.wustl.edu	37	11	66136839	66136839	+	Splice_Site	DEL	C	C	-			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	11	66136839	66136839	C	-	DEL	SLC29A2	ENST00000357440	human	ensembl	69_37n	-1	known	splice_site_del	c.275+1	e3+1	1.000	-	-	-	no_errors	SLC29A2	HGNC	ENSG00000174669	43	0	0.00	12	2	14.29	-	-	-
SYNPO2L	0	genome.wustl.edu	37	10	75406545	75406545	+	Silent	SNP	C	C	T			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	10	75406545	75406545	C	T	SNP	SYNPO2L	ENST00000394810	human	ensembl	69_37n	-1	known	silent	c.2865	p.R955	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2L	HGNC	ENSG00000166317	51	0	0.00	19	8	29.63	-	-	-
TMEM99	0	genome.wustl.edu	37	17	38991201	38991201	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	17	38991201	38991201	G	A	SNP	TMEM99	ENST00000301665	human	ensembl	69_37n	+1	known	missense	c.433	p.V145I	0.003	NULL	NULL	-	no_errors	TMEM99	HGNC	ENSG00000167920	101	0	0.00	33	9	21.43	-	-	-
TYSND1	0	genome.wustl.edu	37	10	71905831	71905831	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	10	71905831	71905831	G	A	SNP	TYSND1	ENST00000287078	human	ensembl	69_37n	-1	known	missense	c.512	p.S171L	0.970	pirsf_Pept_S1A_Tysnd1	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,pirsf_Pept_S1A_Tysnd1	-	no_errors	TYSND1	HGNC	ENSG00000156521	23	0	0.00	8	4	33.33	-	-	-
ZNF217	0	genome.wustl.edu	37	20	52192368	52192368	+	Missense_Mutation	SNP	C	C	A			TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	20	52192368	52192368	C	A	SNP	ZNF217	ENST00000302342	human	ensembl	69_37n	-1	known	missense	c.2935	p.D979Y	0.121	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940	71	0	0.00	27	14	34.15	-	-	-
