Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCC8	0	genome.wustl.edu	37	11	17428939	17428939	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	17428939	17428939	G	A	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	missense	c.2885	p.S962L	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	180	0	0.00	191	32	14.35	-	-	-
CDK12	0	genome.wustl.edu	37	17	37687471	37687472	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	17	37687471	37687472	-	G	INS	CDK12	ENST00000447079	human	ensembl	69_37n	+1	known	frame_shift_ins	c.4375_4376	p.P1463fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK12	HGNC	ENSG00000167258	34	0	0.00	37	6	13.95	-	-	-
CILP	0	genome.wustl.edu	37	15	65491181	65491181	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	15	65491181	65491181	G	T	SNP	CILP	ENST00000261883	human	ensembl	69_37n	-1	known	missense	c.1443	p.S481R	1.000	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	CILP	HGNC	ENSG00000138615	45	0	0.00	41	5	10.87	-	-	-
CLP1	0	genome.wustl.edu	37	11	57428789	57428790	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	57428789	57428790	AT	-	DEL	CLP1	ENST00000525602	human	ensembl	69_37n	+1	known	frame_shift_del	c.1159_1160	p.I387fs	1.000:1.000	pfam_Pre-mRNA_cleavage_cplxII_Clp1	pfam_Pre-mRNA_cleavage_cplxII_Clp1	-	no_errors	CLP1	HGNC	ENSG00000172409	226	0	0.00	163	72	30.38	-	-	-
CPSF1	0	genome.wustl.edu	37	8	145624997	145624997	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	8	145624997	145624997	A	-	DEL	CPSF1	ENST00000349769	human	ensembl	69_37n	-1	known	frame_shift_del	c.1223	p.V408fs	0.026	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	21	0	0.00	19	32	62.75	-	-	-
CYP7B1	0	genome.wustl.edu	37	8	65527680	65527680	+	Silent	SNP	G	G	A			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	8	65527680	65527680	G	A	SNP	CYP7B1	ENST00000310193	human	ensembl	69_37n	-1	known	silent	c.960	p.D320	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817	123	0	0.00	149	21	12.28	-	-	-
DCAF4L1	0	genome.wustl.edu	37	4	41984183	41984183	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	4	41984183	41984183	G	A	SNP	DCAF4L1	ENST00000333141	human	ensembl	69_37n	+1	known	missense	c.374	p.R125Q	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L1	HGNC	ENSG00000182308	67	0	0.00	52	9	14.75	-	-	-
EHF	0	genome.wustl.edu	37	11	34664214	34664214	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	34664214	34664214	C	G	SNP	EHF	ENST00000257831	human	ensembl	69_37n	+1	known	missense	c.37	p.P13A	1.000	superfamily_SAM/pointed	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	EHF	HGNC	ENSG00000135373	111	0	0.00	31	12	27.91	-	-	-
EML3	0	genome.wustl.edu	37	11	62378801	62378802	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	62378801	62378802	-	G	INS	EML3	ENST00000529309	human	ensembl	69_37n	-1	known	frame_shift_ins	c.210_209	p.G71fs	0.982:1.000	NULL	pfam_HELP,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML3	HGNC	ENSG00000149499	17	0	0.00	10	3	23.08	-	-	-
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	RNA	INS	-	-	GCA			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	9	141107536	141107537	-	GCA	INS	FAM157B	ENST00000446912	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.033:0.036	-	-	-	no_errors	FAM157B	HGNC	ENSG00000233013	63	0	0.00	46	6	11.54	-	-	-
GALNTL2	0	genome.wustl.edu	37	3	16216886	16216887	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	3	16216886	16216887	AG	-	DEL	GALNTL2	ENST00000339732	human	ensembl	69_37n	+1	known	frame_shift_del	c.228_229	p.E77fs	0.263:0.860	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL2	HGNC	ENSG00000131386	130	0	0.00	163	89	35.32	-	-	-
GALNTL2	0	genome.wustl.edu	37	3	16216891	16216891	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	3	16216891	16216891	A	-	DEL	GALNTL2	ENST00000339732	human	ensembl	69_37n	+1	known	frame_shift_del	c.233	p.Y78fs	0.905	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL2	HGNC	ENSG00000131386	137	0	0.00	147	89	37.71	-	-	-
GLB1L3	0	genome.wustl.edu	37	11	134179562	134179562	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	134179562	134179562	C	T	SNP	GLB1L3	ENST00000431683	human	ensembl	69_37n	+1	known	missense	c.1004	p.S335F	1.000	pfam_Glycoside_Hdrlase_35,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L3	HGNC	ENSG00000166105	61	0	0.00	46	33	41.77	-	-	-
GNB3	0	genome.wustl.edu	37	12	6952161	6952161	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	12	6952161	6952161	C	T	SNP	GNB3	ENST00000229264	human	ensembl	69_37n	+1	known	nonsense	c.124	p.R42*	1.000	superfamily_WD40_repeat_dom,pirsf_Guanine_nucleotide-bd_bsu	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep	-	no_errors	GNB3	HGNC	ENSG00000111664	219	0	0.00	194	22	10.19	-	-	-
IRF2BP2	0	genome.wustl.edu	37	1	234743301	234743302	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	1	234743301	234743302	-	A	INS	IRF2BP2	ENST00000366609	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1346_1345	p.S449fs	1.000:1.000	pfam_Interferon_reg_fac2-bd1_2_Znf	pfam_Interferon_reg_fac2-bd1_2_Znf	-	no_errors	IRF2BP2	HGNC	ENSG00000168264	71	0	0.00	20	7	25.93	-	-	-
KDM4C	0	genome.wustl.edu	37	9	6793072	6793072	+	Silent	SNP	G	G	A			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	9	6793072	6793072	G	A	SNP	KDM4C	ENST00000381309	human	ensembl	69_37n	+1	known	silent	c.84	p.E28	0.431	pfam_TF_JmjN,smart_TF_JmjN,pfscan_TF_JmjN	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	79	0	0.00	94	19	16.81	-	-	-
KIAA2022	0	genome.wustl.edu	37	X	73963301	73963301	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	X	73963301	73963301	A	-	DEL	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	frame_shift_del	c.1091	p.F364fs	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	124	0	0.00	124	23	15.65	-	-	-
LDB2	0	genome.wustl.edu	37	4	16504298	16504298	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	4	16504298	16504298	A	T	SNP	LDB2	ENST00000304523	human	ensembl	69_37n	-1	known	missense	c.1090	p.S364T	1.000	NULL	NULL	-	no_errors	LDB2	HGNC	ENSG00000169744	146	0	0.00	129	18	12.24	-	-	-
LRFN2	0	genome.wustl.edu	37	6	40400576	40400577	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	6	40400576	40400577	-	C	INS	LRFN2	ENST00000338305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.277_276	p.P92fs	1.000:1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN2	HGNC	ENSG00000156564	58	0	0.00	31	17	35.42	-	-	-
LRIG2	0	genome.wustl.edu	37	1	113616247	113616248	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	1	113616247	113616248	-	C	INS	LRIG2	ENST00000361127	human	ensembl	69_37n	+1	known	frame_shift_ins	c.219_220	p.D75fs	1.000:1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG2	HGNC	ENSG00000198799	21	0	0.00	18	2	10.00	-	-	-
LSMD1	0	genome.wustl.edu	37	17	7760674	7760675	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	17	7760674	7760675	-	C	INS	LSMD1	ENST00000333775	human	ensembl	69_37n	-1	known	frame_shift_ins	c.68_67	p.L23fs	0.000:0.007	NULL	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSMD1	HGNC	ENSG00000183011	8	0	0.00	10	5	33.33	-	-	-
MAGEA8	0	genome.wustl.edu	37	X	149013310	149013311	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	X	149013310	149013311	-	G	INS	MAGEA8	ENST00000286482	human	ensembl	69_37n	+1	known	frame_shift_ins	c.264_265	p.S88fs	0.001:0.002	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA8	HGNC	ENSG00000156009	66	0	0.00	28	12	30.00	-	-	-
MAGEA8	0	genome.wustl.edu	37	X	149013312	149013313	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	X	149013312	149013313	-	T	INS	MAGEA8	ENST00000286482	human	ensembl	69_37n	+1	known	frame_shift_ins	c.266_267	p.N90fs	0.001:0.001	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA8	HGNC	ENSG00000156009	67	0	0.00	29	12	29.27	-	-	-
MAST1	0	genome.wustl.edu	37	19	12978650	12978651	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	19	12978650	12978651	-	C	INS	MAST1	ENST00000251472	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2425_2426	p.Q811fs	0.596:0.615	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	27	0	0.00	27	3	10.00	-	-	-
MST1P9	0	genome.wustl.edu	37	1	17083776	17083776	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	1	17083776	17083776	C	A	SNP	MST1P9	ENST00000334998	human	ensembl	69_37n	-1	known	missense	c.2021	p.R674L	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	MST1P9	HGNC	ENSG00000186715	30	0	0.00	52	9	14.52	-	-	-
NRBP1	0	genome.wustl.edu	37	2	27656951	27656951	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	2	27656951	27656951	G	-	DEL	NRBP1	ENST00000233557	human	ensembl	69_37n	+1	known	frame_shift_del	c.429	p.A144fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NRBP1	HGNC	ENSG00000115216	96	0	0.00	82	54	39.13	-	-	-
NYAP2	0	genome.wustl.edu	37	2	226273793	226273793	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	2	226273793	226273793	G	A	SNP	NYAP2	ENST00000272907	human	ensembl	69_37n	+1	known	missense	c.197	p.R66Q	1.000	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460	63	0	0.00	64	11	14.47	-	-	-
OR56A1	0	genome.wustl.edu	37	11	6048841	6048841	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	6048841	6048841	G	A	SNP	OR56A1	ENST00000316650	human	ensembl	69_37n	-1	known	missense	c.94	p.H32Y	0.930	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR56A1	HGNC	ENSG00000180934	444	0	0.00	345	42	10.82	-	-	-
OXER1	0	genome.wustl.edu	37	2	42991088	42991089	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	2	42991088	42991089	-	C	INS	OXER1	ENST00000378661	human	ensembl	69_37n	-1	known	frame_shift_ins	c.232_231	p.S77fs	0.000:0.001	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	OXER1	HGNC	ENSG00000162881	41	0	0.00	45	5	10.00	-	-	-
PARP12	0	genome.wustl.edu	37	7	139726015	139726015	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	7	139726015	139726015	C	G	SNP	PARP12	ENST00000263549	human	ensembl	69_37n	-1	known	missense	c.1762	p.G588R	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Znf_CCCH,smart_Znf_CCCH,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP12	HGNC	ENSG00000059378	76	0	0.00	31	27	46.55	-	-	-
PGA5	0	genome.wustl.edu	37	11	61017206	61017206	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	61017206	61017206	C	G	SNP	PGA5	ENST00000312403	human	ensembl	69_37n	+1	known	missense	c.839	p.T280S	1.000	pfam_Peptidase_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	pfam_Peptidase_A1,pfam_Propep_A1,superfamily_Peptidase_aspartic,prints_Peptidase_A1	-	no_errors	PGA5	HGNC	ENSG00000256713	154	0	0.00	124	106	45.89	-	-	-
POTEE	0	genome.wustl.edu	37	2	132021946	132021946	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	2	132021946	132021946	G	A	SNP	POTEE	ENST00000356920	human	ensembl	69_37n	+1	known	missense	c.2918	p.G973D	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like	-	no_errors	AC131180.1	Clone_based_ensembl_gene	ENSG00000188219	8	0	0.00	13	10	43.48	-	-	-
PPP1R32	0	genome.wustl.edu	37	11	61258004	61258004	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	61258004	61258004	A	C	SNP	PPP1R32	ENST00000338608	human	ensembl	69_37n	+1	known	missense	c.1240	p.N414H	0.000	NULL	NULL	-	no_errors	PPP1R32	HGNC	ENSG00000162148	78	0	0.00	83	26	23.85	-	-	-
REV1	0	genome.wustl.edu	37	2	100019354	100019354	+	Silent	SNP	G	G	A			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	2	100019354	100019354	G	A	SNP	REV1	ENST00000258428	human	ensembl	69_37n	-1	known	silent	c.3382	p.L1128	0.966	pirsf_REV1	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_DNA_pol_Y-fam_little_finger,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	REV1	HGNC	ENSG00000135945	149	0	0.00	86	22	20.37	-	-	-
RSBN1L	0	genome.wustl.edu	37	7	77379331	77379331	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	7	77379331	77379331	T	G	SNP	RSBN1L	ENST00000334955	human	ensembl	69_37n	+1	known	missense	c.1294	p.L432V	0.992	NULL	NULL	-	no_errors	RSBN1L	HGNC	ENSG00000187257	88	0	0.00	33	15	31.25	-	-	-
SLC25A5	0	genome.wustl.edu	37	X	118603962	118603962	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	X	118603962	118603962	T	-	DEL	SLC25A5	ENST00000317881	human	ensembl	69_37n	+1	known	frame_shift_del	c.450	p.E151fs	0.913	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor	-	no_errors	SLC25A5	HGNC	ENSG00000005022	54	0	0.00	50	8	13.79	-	-	-
SOCS7	0	genome.wustl.edu	37	17	36522192	36522192	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	17	36522192	36522192	C	T	SNP	SOCS7	ENST00000580660	human	ensembl	69_37n	+1	putative	missense	c.178	p.H60Y	0.997	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_start_codon:pseudogene:no_stop_codon	SOCS7	HGNC	ENSG00000174111	133	0	0.00	87	44	33.59	-	-	-
SPNS1	0	genome.wustl.edu	37	16	28986519	28986519	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	16	28986519	28986519	C	G	SNP	SPNS1	ENST00000311008	human	ensembl	69_37n	+1	known	missense	c.47	p.P16R	0.998	NULL	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS1	HGNC	ENSG00000169682	36	0	0.00	34	8	19.05	-	-	-
SRCAP	0	genome.wustl.edu	37	16	30722123	30722123	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	16	30722123	30722123	C	T	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	+1	known	missense	c.1183	p.H395Y	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	357	0	0.00	301	54	15.21	-	-	-
TMEM233	0	genome.wustl.edu	37	12	120031840	120031840	+	Splice_Site	SNP	G	G	A			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	12	120031840	120031840	G	A	SNP	TMEM233	ENST00000426426	human	ensembl	69_37n	+1	known	splice_site	c.186+1	e1+1	1.000	-	-	-	no_errors	TMEM233	HGNC	ENSG00000224982	365	0	0.00	315	84	21.00	-	-	-
TMPRSS11B	0	genome.wustl.edu	37	4	69094493	69094493	+	Silent	SNP	A	A	T			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	4	69094493	69094493	A	T	SNP	TMPRSS11B	ENST00000332644	human	ensembl	69_37n	-1	known	silent	c.1056	p.A352	0.998	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1_S6,pfam_SEA,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_SEA,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS11B	HGNC	ENSG00000185873	188	1	0.53	92	11	10.68	-	-	-
WIF1	0	genome.wustl.edu	37	12	65460458	65460458	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	12	65460458	65460458	G	C	SNP	WIF1	ENST00000286574	human	ensembl	69_37n	-1	known	missense	c.693	p.I231M	1.000	pfam_EGF_extracell,smart_EGF-like,pfscan_EG-like_dom	pfam_WIF,pfam_EGF_extracell,smart_WIF,smart_EGF-like,pfscan_EG-like_dom,pfscan_WIF,prints_Wnt-inh	-	no_errors	WIF1	HGNC	ENSG00000156076	127	0	0.00	150	19	11.24	-	-	-
YIPF7	0	genome.wustl.edu	37	4	44626756	44626756	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	4	44626756	44626756	A	T	SNP	YIPF7	ENST00000332990	human	ensembl	69_37n	-1	known	missense	c.542	p.I181N	0.999	pfam_Yip1	pfam_Yip1	-	no_errors	YIPF7	HGNC	ENSG00000177752	219	0	0.00	131	25	16.03	-	-	-
ZNF362	0	genome.wustl.edu	37	1	33745932	33745933	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	1	33745932	33745933	-	C	INS	ZNF362	ENST00000373428	human	ensembl	69_37n	+1	known	frame_shift_ins	c.557_558	p.K189fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF362	HGNC	ENSG00000160094	32	0	0.00	47	6	11.32	-	-	-
ZNF486	0	genome.wustl.edu	37	19	20307906	20307906	+	Silent	SNP	G	G	T			TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	19	20307906	20307906	G	T	SNP	ZNF486	ENST00000335117	human	ensembl	69_37n	+1	known	silent	c.387	p.V129	0.982	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229	63	0	0.00	99	24	19.51	-	-	-
