Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA9	0	genome.wustl.edu	37	17	66979929	66979929	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	66979929	66979929	T	C	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.4561	p.K1521E	1.000	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	101	0	0.00	101	17	14.41	-	-	-
ABCC6	0	genome.wustl.edu	37	16	16263518	16263518	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	16	16263518	16263518	G	-	DEL	ABCC6	ENST00000205557	human	ensembl	69_37n	-1	known	frame_shift_del	c.2980	p.L994fs	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262	14	0	0.00	5	3	37.50	-	-	-
AGBL5	0	genome.wustl.edu	37	2	27275875	27275875	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	27275875	27275875	G	C	SNP	AGBL5	ENST00000360131	human	ensembl	69_37n	+1	known	missense	c.49	p.G17R	1.000	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693	58	0	0.00	20	26	56.52	-	-	-
APOB	0	genome.wustl.edu	37	2	21232258	21232258	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	21232258	21232258	A	C	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.7482	p.N2494K	0.888	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	136	1	0.73	61	15	19.74	-	-	-
ARHGAP31	0	genome.wustl.edu	37	3	119134300	119134300	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	119134300	119134300	G	A	SNP	ARHGAP31	ENST00000264245	human	ensembl	69_37n	+1	known	missense	c.3524	p.R1175H	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	42	0	0.00	33	8	19.51	-	-	-
ASNS	0	genome.wustl.edu	37	7	97481770	97481770	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	7	97481770	97481770	G	A	SNP	ASNS	ENST00000175506	human	ensembl	69_37n	-1	known	missense	c.1487	p.A496V	0.134	NULL	pfam_Asn_synthase,pfam_GATase_dom,tigrfam_Asn_synth_AEB	-	no_errors	ASNS	HGNC	ENSG00000070669	79	0	0.00	68	12	15.00	-	-	-
ATP2A1	0	genome.wustl.edu	37	16	28899040	28899040	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	16	28899040	28899040	G	A	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	+1	known	missense	c.925	p.E309K	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	54	0	0.00	38	13	25.49	-	-	-
ATP2B3	0	genome.wustl.edu	37	X	152835130	152835130	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	152835130	152835130	C	A	SNP	ATP2B3	ENST00000359149	human	ensembl	69_37n	+1	known	missense	c.3412	p.L1138I	1.000	pfam_ATP_Ca_trans_C	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_ATP_Ca_trans_C,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	126	0	0.00	104	21	16.80	-	-	-
BLK	0	genome.wustl.edu	37	8	11412989	11412989	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	11412989	11412989	G	T	SNP	BLK	ENST00000259089	human	ensembl	69_37n	+1	known	missense	c.768	p.W256C	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	BLK	HGNC	ENSG00000136573	76	0	0.00	21	40	65.57	-	-	-
BRCA1	0	genome.wustl.edu	37	17	41245390	41245390	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	41245390	41245390	C	A	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	nonsense	c.2158	p.E720*	0.008	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	82	0	0.00	9	33	78.57	-	-	-
CARD17	0	genome.wustl.edu	37	11	104971500	104971500	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	104971500	104971500	A	T	SNP	CARD17	ENST00000375707	human	ensembl	69_37n	-1	known	missense	c.14	p.V5D	0.090	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD17	HGNC	ENSG00000255221	137	0	0.00	61	16	20.78	-	-	-
CD9	0	genome.wustl.edu	37	12	6344725	6344725	+	Silent	SNP	C	C	G			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	6344725	6344725	C	G	SNP	CD9	ENST00000009180	human	ensembl	69_37n	+1	known	silent	c.531	p.T177	0.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD9	HGNC	ENSG00000010278	84	0	0.00	37	13	26.00	-	-	-
CHST9	0	genome.wustl.edu	37	18	24497140	24497140	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	18	24497140	24497140	C	A	SNP	CHST9	ENST00000284224	human	ensembl	69_37n	-1	known	missense	c.415	p.A139S	0.000	NULL	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080	105	1	0.94	86	30	25.86	-	-	-
COL6A6	0	genome.wustl.edu	37	3	130380981	130380981	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	130380981	130380981	C	G	SNP	COL6A6	ENST00000358511	human	ensembl	69_37n	+1	known	missense	c.6331	p.Q2111E	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	98	0	0.00	52	18	25.71	-	-	-
CRAT	0	genome.wustl.edu	37	9	131860611	131860611	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	9	131860611	131860611	G	A	SNP	CRAT	ENST00000455396	human	ensembl	69_37n	-1	novel	missense	c.40	p.P14S	0.782	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CRAT	HGNC	ENSG00000095321	40	0	0.00	27	6	18.18	-	-	-
CRCP	0	genome.wustl.edu	37	7	65579837	65579837	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	7	65579837	65579837	G	T	SNP	CRCP	ENST00000431089	human	ensembl	69_37n	+1	putative	nonsense	c.22	p.E8*	0.993	NULL	pfam_RNA_pol_II_Rpb4,superfamily_HRDC-like,smart_RNA_pol_II_Rpb4_core	-	no_errors	CRCP	HGNC	ENSG00000241258	38	0	0.00	28	8	22.22	-	-	-
CYP1B1-AS1	0	genome.wustl.edu	37	2	38407861	38407861	+	RNA	SNP	A	A	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	38407861	38407861	A	T	SNP	CYP1B1-AS1	ENST00000413828	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CYP1B1-AS1	HGNC	ENSG00000232973	91	0	0.00	63	20	24.10	-	-	-
DNAH5	0	genome.wustl.edu	37	5	13700790	13700790	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	5	13700790	13700790	A	T	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.13682	p.F4561Y	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	79	0	0.00	85	11	11.46	-	-	-
DNMT1	0	genome.wustl.edu	37	19	10291057	10291057	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	19	10291057	10291057	G	A	SNP	DNMT1	ENST00000590619	human	ensembl	69_37n	-1	novel	nonsense	c.1	p.Q1*	0.013	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	DNMT1	HGNC	ENSG00000130816	93	0	0.00	39	17	30.36	-	-	-
DOCK6	0	genome.wustl.edu	37	19	11313275	11313275	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	19	11313275	11313275	G	A	SNP	DOCK6	ENST00000587656	human	ensembl	69_37n	-1	novel	missense	c.3211	p.L1071F	0.988	NULL	pfam_DOCK	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK6	HGNC	ENSG00000130158	36	0	0.00	14	6	30.00	-	-	-
DTX4	0	genome.wustl.edu	37	11	58949292	58949292	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	58949292	58949292	G	A	SNP	DTX4	ENST00000227451	human	ensembl	69_37n	+1	known	missense	c.292	p.D98N	1.000	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,pfam_Znf_C3HC4_RING-type,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX4	HGNC	ENSG00000110042	37	0	0.00	28	8	22.22	-	-	-
DUSP19	0	genome.wustl.edu	37	2	183943850	183943850	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	183943850	183943850	C	A	SNP	DUSP19	ENST00000354221	human	ensembl	69_37n	+1	known	missense	c.189	p.D63E	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	-	no_errors	DUSP19	HGNC	ENSG00000162999	126	0	0.00	87	27	23.68	-	-	-
ENPP1	0	genome.wustl.edu	37	6	132206110	132206110	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	6	132206110	132206110	A	G	SNP	ENPP1	ENST00000360971	human	ensembl	69_37n	+1	known	missense	c.2351	p.Y784C	0.996	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP1	HGNC	ENSG00000197594	132	0	0.00	68	9	11.69	-	-	-
EPHB1	0	genome.wustl.edu	37	3	134884889	134884889	+	Silent	SNP	C	C	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	134884889	134884889	C	A	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	+1	known	silent	c.1665	p.S555	0.133	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	42	0	0.00	24	17	41.46	-	-	-
ERC1	0	genome.wustl.edu	37	12	1137553	1137553	+	Silent	SNP	T	T	C			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	1137553	1137553	T	C	SNP	ERC1	ENST00000360905	human	ensembl	69_37n	+1	known	silent	c.484	p.L162	0.000	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805	50	0	0.00	19	7	26.92	-	-	-
FAM13C	0	genome.wustl.edu	37	10	61023859	61023859	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	10	61023859	61023859	C	G	SNP	FAM13C	ENST00000373868	human	ensembl	69_37n	-1	known	missense	c.1010	p.R337P	1.000	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541	101	0	0.00	53	13	19.70	-	-	-
FAP	0	genome.wustl.edu	37	2	163083083	163083083	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	163083083	163083083	A	T	SNP	FAP	ENST00000188790	human	ensembl	69_37n	-1	known	missense	c.140	p.I47N	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098	107	0	0.00	49	28	36.36	-	-	-
FAT3	0	genome.wustl.edu	37	11	92614034	92614034	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	92614034	92614034	G	-	DEL	FAT3	ENST00000298047	human	ensembl	69_37n	+1	known	frame_shift_del	c.12265	p.L4090fs	1.000	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	51	0	0.00	13	2	12.50	-	-	-
FHL1	0	genome.wustl.edu	37	X	135288738	135288738	+	Silent	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	135288738	135288738	G	A	SNP	FHL1	ENST00000345434	human	ensembl	69_37n	+1	known	silent	c.147	p.A49	0.084	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL1	HGNC	ENSG00000022267	32	0	0.00	17	4	19.05	-	-	-
FRY	0	genome.wustl.edu	37	13	32863812	32863812	+	Silent	SNP	C	C	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	13	32863812	32863812	C	T	SNP	FRY	ENST00000380250	human	ensembl	69_37n	+1	known	silent	c.8512	p.L2838	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	60	0	0.00	40	9	18.37	-	-	-
GAPDH	0	genome.wustl.edu	37	12	6646882	6646882	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	6646882	6646882	G	C	SNP	GAPDH	ENST00000229239	human	ensembl	69_37n	+1	known	missense	c.658	p.V220L	1.000	pfam_GlycerAld_3-P_DH_cat,pirsf_GlycerAld/Erythrose_P_DH,tigrfam_Glyceraldehyde-3-P_DH_1	pfam_GlycerAld_3-P_DH_cat,pfam_GlycerAld_3-P_DH_NAD(P)-bd,smart_GlycerAld_3-P_DH_NAD(P)-bd,pirsf_GlycerAld/Erythrose_P_DH,prints_GlycerAld/Erythrose_P_DH,tigrfam_Glyceraldehyde-3-P_DH_1	-	no_errors	GAPDH	HGNC	ENSG00000111640	20	0	0.00	10	5	33.33	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115852	8115853	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	10	8115852	8115853	AT	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_del	c.1201_1202	p.M401fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	70	0	0.00	34	13	26.53	-	-	-
GLDC	0	genome.wustl.edu	37	9	6533047	6533048	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	9	6533047	6533048	-	GG	INS	GLDC	ENST00000321612	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3033_3032	p.F1012fs	0.009:1.000	NULL	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445	79	0	0.00	39	6	13.33	-	-	-
HCRTR1	0	genome.wustl.edu	37	1	32089153	32089153	+	Silent	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	32089153	32089153	G	A	SNP	HCRTR1	ENST00000373706	human	ensembl	69_37n	+1	known	silent	c.768	p.R256	0.995	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Orexin_rcpt,prints_Orexin_rcpt_1	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Orexin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Orexin_rcpt_1,prints_NPY_rcpt	-	no_errors	HCRTR1	HGNC	ENSG00000121764	13	0	0.00	7	6	46.15	-	-	-
HIST1H2BJ	0	genome.wustl.edu	37	6	27100352	27100352	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	6	27100352	27100352	T	G	SNP	HIST1H2BJ	ENST00000339812	human	ensembl	69_37n	-1	known	missense	c.178	p.M60L	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BJ	HGNC	ENSG00000124635	88	0	0.00	88	21	19.27	-	-	-
HNRNPKP3	0	genome.wustl.edu	37	11	43283619	43283619	+	RNA	DEL	G	G	-			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	43283619	43283619	G	-	DEL	HNRNPKP3	ENST00000511537	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	HNRNPKP3	HGNC	ENSG00000251557	14	0	0.00	4	2	33.33	-	-	-
HYDIN	0	genome.wustl.edu	37	16	70954761	70954761	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	16	70954761	70954761	C	A	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.7515	p.R2505S	0.422	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	50	0	0.00	38	8	17.39	-	-	-
KALRN	0	genome.wustl.edu	37	3	124174098	124174098	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	124174098	124174098	G	A	SNP	KALRN	ENST00000354186	human	ensembl	69_37n	+1	novel	missense	c.3527	p.R1176Q	0.964	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KALRN	HGNC	ENSG00000160145	43	0	0.00	18	6	25.00	-	-	-
KIAA0528	0	genome.wustl.edu	37	12	22627752	22627752	+	Nonsense_Mutation	SNP	G	G	C			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	22627752	22627752	G	C	SNP	KIAA0528	ENST00000333957	human	ensembl	69_37n	-1	known	nonsense	c.1976	p.S659*	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	KIAA0528	HGNC	ENSG00000111731	112	0	0.00	53	25	32.05	-	-	-
KIAA1217	0	genome.wustl.edu	37	10	24833030	24833030	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	10	24833030	24833030	G	T	SNP	KIAA1217	ENST00000376454	human	ensembl	69_37n	+1	known	missense	c.4831	p.D1611Y	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	49	0	0.00	36	4	10.00	-	-	-
KIAA1328	0	genome.wustl.edu	37	18	34646885	34646885	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	18	34646885	34646885	A	C	SNP	KIAA1328	ENST00000587139	human	ensembl	69_37n	+1	putative	missense	c.572	p.H191P	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KIAA1328	HGNC	ENSG00000150477	70	0	0.00	31	11	26.19	-	-	-
LAMA4	0	genome.wustl.edu	37	6	112575076	112575077	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	6	112575076	112575077	GA	-	DEL	LAMA4	ENST00000368638	human	ensembl	69_37n	-1	known	frame_shift_del	c.277_276	p.P93fs	0.000:0.000	NULL	NULL	-	no_errors	LAMA4	HGNC	ENSG00000112769	52	0	0.00	17	2	10.53	-	-	-
MAN1A2	0	genome.wustl.edu	37	1	118039456	118039456	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	118039456	118039456	C	T	SNP	MAN1A2	ENST00000449370	human	ensembl	69_37n	+1	known	missense	c.554	p.T185I	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAN1A2	HGNC	ENSG00000198162	68	0	0.00	42	19	31.15	-	-	-
MGAT5	0	genome.wustl.edu	37	2	135206253	135206253	+	Silent	SNP	C	C	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	135206253	135206253	C	T	SNP	MGAT5	ENST00000281923	human	ensembl	69_37n	+1	known	silent	c.2061	p.A687	1.000	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127	58	0	0.00	32	12	27.27	-	-	-
NPAS2	0	genome.wustl.edu	37	2	101594255	101594255	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	101594255	101594255	G	C	SNP	NPAS2	ENST00000542504	human	ensembl	69_37n	+1	known	missense	c.1671	p.M557I	0.826	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	36	0	0.00	23	8	25.81	-	-	-
NRK	0	genome.wustl.edu	37	X	105168991	105168991	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	105168991	105168991	C	A	SNP	NRK	ENST00000428173	human	ensembl	69_37n	+1	known	missense	c.3283	p.P1095T	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	38	0	0.00	16	9	36.00	-	-	-
NUP54	0	genome.wustl.edu	37	4	77038880	77038881	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	4	77038880	77038881	AA	-	DEL	NUP54	ENST00000264883	human	ensembl	69_37n	-1	known	frame_shift_del	c.1332_1331	p.F444fs	1.000:1.000	NULL	NULL	-	no_errors	NUP54	HGNC	ENSG00000138750	60	0	0.00	34	13	27.66	-	-	-
ODZ4	0	genome.wustl.edu	37	11	78381001	78381001	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	78381001	78381001	A	G	SNP	ODZ4	ENST00000278550	human	ensembl	69_37n	-1	known	missense	c.6389	p.I2130T	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ4	HGNC	ENSG00000149256	39	0	0.00	19	9	31.03	-	-	-
OR4N5	0	genome.wustl.edu	37	14	20612251	20612251	+	Silent	SNP	C	C	G			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	14	20612251	20612251	C	G	SNP	OR4N5	ENST00000333629	human	ensembl	69_37n	+1	known	silent	c.357	p.A119	0.984	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4N5	HGNC	ENSG00000184394	80	0	0.00	54	8	12.90	-	-	-
PCDHGA1	0	genome.wustl.edu	37	5	140712271	140712271	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	5	140712271	140712271	G	A	SNP	PCDHGA1	ENST00000517417	human	ensembl	69_37n	+1	known	missense	c.2020	p.D674N	0.981	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	34	0	0.00	26	10	27.78	-	-	-
PDCL	0	genome.wustl.edu	37	9	125588988	125588988	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	9	125588988	125588988	G	T	SNP	PDCL	ENST00000259467	human	ensembl	69_37n	-1	known	missense	c.79	p.H27N	0.461	NULL	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,prints_Phosducin	-	no_errors	PDCL	HGNC	ENSG00000136940	96	0	0.00	55	7	11.29	-	-	-
PLA2G4D	0	genome.wustl.edu	37	15	42379619	42379619	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	15	42379619	42379619	G	T	SNP	PLA2G4D	ENST00000290472	human	ensembl	69_37n	-1	known	missense	c.134	p.P45H	0.860	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4D	HGNC	ENSG00000159337	54	0	0.00	37	10	21.28	-	-	-
PMP2	0	genome.wustl.edu	37	8	82355662	82355662	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	82355662	82355662	C	A	SNP	PMP2	ENST00000256103	human	ensembl	69_37n	-1	known	missense	c.370	p.V124L	0.900	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	PMP2	HGNC	ENSG00000147588	95	0	0.00	111	28	20.14	-	-	-
PRAMEF11	0	genome.wustl.edu	37	1	12888424	12888424	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	12888424	12888424	A	G	SNP	PRAMEF11	ENST00000535591	human	ensembl	69_37n	-1	known	missense	c.100	p.C34R	0.000	NULL	NULL	-	no_errors	PRAMEF11	HGNC	ENSG00000204513	36	0	0.00	19	4	17.39	-	-	-
PRKCE	0	genome.wustl.edu	37	2	46313346	46313346	+	Splice_Site	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	46313346	46313346	G	A	SNP	PRKCE	ENST00000306156	human	ensembl	69_37n	+1	known	splice_site	c.1438-1	e11-1	1.000	-	-	-	no_errors	PRKCE	HGNC	ENSG00000171132	87	0	0.00	57	13	18.57	-	-	-
PRPF8	0	genome.wustl.edu	37	17	1582137	1582137	+	Silent	SNP	C	C	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	1582137	1582137	C	T	SNP	PRPF8	ENST00000304992	human	ensembl	69_37n	-1	known	silent	c.1638	p.L546	0.994	pfam_PROCN,superfamily_Histone-fold	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_Pre-mRNA-splicing_factor-8,pfam_Prp8_U5-snRNA-bd,pfam_PRO_C,pfam_RRM_spliceosomal_PrP8,pfam_JAB1_Mov34_MPN_PAD1,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	PRPF8	HGNC	ENSG00000174231	47	0	0.00	25	12	32.43	-	-	-
PRSS55	0	genome.wustl.edu	37	8	10383206	10383206	+	Silent	SNP	A	A	G			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	10383206	10383206	A	G	SNP	PRSS55	ENST00000328655	human	ensembl	69_37n	+1	known	silent	c.111	p.G37	0.000	NULL	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS55	HGNC	ENSG00000184647	23	0	0.00	18	8	30.77	-	-	-
PSD3	0	genome.wustl.edu	37	8	18457916	18457916	+	Silent	SNP	G	G	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	18457916	18457916	G	T	SNP	PSD3	ENST00000440756	human	ensembl	69_37n	-1	known	silent	c.2445	p.T815	0.994	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	PSD3	HGNC	ENSG00000156011	154	1	0.65	69	27	28.12	-	-	-
PSG2	0	genome.wustl.edu	37	19	43585335	43585335	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	19	43585335	43585335	G	A	SNP	PSG2	ENST00000329509	human	ensembl	69_37n	-1	known	missense	c.128	p.P43L	0.005	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG2	HGNC	ENSG00000242221	204	0	0.00	180	29	13.88	-	-	-
RAB33A	0	genome.wustl.edu	37	X	129318289	129318289	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	129318289	129318289	C	A	SNP	RAB33A	ENST00000257017	human	ensembl	69_37n	+1	known	missense	c.289	p.R97S	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB33A	HGNC	ENSG00000134594	55	0	0.00	13	4	23.53	-	-	-
RBM27	0	genome.wustl.edu	37	5	145651050	145651050	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	5	145651050	145651050	C	T	SNP	RBM27	ENST00000265271	human	ensembl	69_37n	+1	known	missense	c.2801	p.A934V	1.000	NULL	pfam_PWI,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009	120	0	0.00	74	11	12.94	-	-	-
RBMS1	0	genome.wustl.edu	37	2	161159925	161159925	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	161159925	161159925	T	-	DEL	RBMS1	ENST00000392753	human	ensembl	69_37n	-1	known	frame_shift_del	c.476	p.N159fs	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	RBMS1	HGNC	ENSG00000153250	77	0	0.00	57	19	25.00	-	-	-
RFPL1-AS1	0	genome.wustl.edu	37	22	29833558	29833558	+	RNA	SNP	T	T	C			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	22	29833558	29833558	T	C	SNP	RFPL1-AS1	ENST00000461286	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RFPL1-AS1	HGNC	ENSG00000225465	40	0	0.00	9	10	52.63	-	-	-
RIPK2	0	genome.wustl.edu	37	8	90777697	90777697	+	Silent	SNP	C	C	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	90777697	90777697	C	T	SNP	RIPK2	ENST00000220751	human	ensembl	69_37n	+1	known	silent	c.456	p.I152	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rcpt-int_Ser/Thr_kinase-2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CARD,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rcpt-int_Ser/Thr_kinase-2,pfscan_CARD,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK2	HGNC	ENSG00000104312	61	0	0.00	49	22	30.99	-	-	-
RPA2	0	genome.wustl.edu	37	1	28233517	28233517	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	28233517	28233517	C	A	SNP	RPA2	ENST00000313433	human	ensembl	69_37n	-1	known	missense	c.519	p.K173N	1.000	pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like	pfam_RPA_C,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like	-	no_errors	RPA2	HGNC	ENSG00000117748	78	0	0.00	26	25	49.02	-	-	-
SHISA7	0	genome.wustl.edu	37	19	55952073	55952073	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	19	55952073	55952073	C	T	SNP	SHISA7	ENST00000376325	human	ensembl	69_37n	-1	known	missense	c.731	p.R244Q	0.999	NULL	NULL	-	no_errors	SHISA7	HGNC	ENSG00000187902	29	0	0.00	22	5	18.52	-	-	-
SLC22A14	0	genome.wustl.edu	37	3	38347782	38347782	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	38347782	38347782	T	A	SNP	SLC22A14	ENST00000273173	human	ensembl	69_37n	+1	known	missense	c.265	p.F89I	0.207	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A14	HGNC	ENSG00000144671	54	0	0.00	30	6	16.67	-	-	-
SLC2A2	0	genome.wustl.edu	37	3	170736404	170736404	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	170736404	170736404	C	-	DEL	SLC2A2	ENST00000314251	human	ensembl	69_37n	-1	known	frame_shift_del	c.24	p.T9fs	0.760	superfamily_MFS_dom_general_subst_transpt,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glc_transpt_2,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A2	HGNC	ENSG00000163581	39	0	0.00	42	22	33.33	-	-	-
SLC30A8	0	genome.wustl.edu	37	8	118165274	118165274	+	Silent	SNP	G	G	C			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	118165274	118165274	G	C	SNP	SLC30A8	ENST00000456015	human	ensembl	69_37n	+1	known	silent	c.363	p.L121	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A8	HGNC	ENSG00000164756	80	0	0.00	85	14	14.14	-	-	-
SLC9C1	0	genome.wustl.edu	37	3	111983118	111983118	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	111983118	111983118	A	T	SNP	SLC9C1	ENST00000305815	human	ensembl	69_37n	-1	known	missense	c.951	p.H317Q	0.042	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C1	HGNC	ENSG00000172139	64	0	0.00	60	12	16.67	-	-	-
SLFN12L	0	genome.wustl.edu	37	17	33802086	33802086	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	33802086	33802086	G	T	SNP	SLFN12L	ENST00000449046	human	ensembl	69_37n	-1	known	nonsense	c.1716	p.Y572*	0.010	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12L	HGNC	ENSG00000205045	166	0	0.00	204	23	10.13	-	-	-
SMAD4	0	genome.wustl.edu	37	18	48575132	48575132	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	18	48575132	48575132	T	G	SNP	SMAD4	ENST00000342988	human	ensembl	69_37n	+1	known	missense	c.326	p.L109R	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646	80	0	0.00	37	7	15.91	-	-	-
SMARCA1	0	genome.wustl.edu	37	X	128641922	128641922	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	128641922	128641922	G	T	SNP	SMARCA1	ENST00000371122	human	ensembl	69_37n	-1	known	missense	c.962	p.S321Y	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038	72	0	0.00	38	6	13.64	-	-	-
SORL1	0	genome.wustl.edu	37	11	121458742	121458742	+	Silent	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	121458742	121458742	G	A	SNP	SORL1	ENST00000260197	human	ensembl	69_37n	+1	known	silent	c.3828	p.T1276	0.000	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642	81	0	0.00	42	7	14.29	-	-	-
SSFA2	0	genome.wustl.edu	37	2	182766619	182766619	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	182766619	182766619	C	A	SNP	SSFA2	ENST00000431877	human	ensembl	69_37n	+1	known	missense	c.839	p.T280K	1.000	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434	47	0	0.00	27	17	37.78	-	-	-
TARS2	0	genome.wustl.edu	37	1	150469022	150469022	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	150469022	150469022	C	T	SNP	TARS2	ENST00000369064	human	ensembl	69_37n	+1	known	missense	c.839	p.S280F	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit,tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-synth_IIa,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374	69	0	0.00	87	18	17.14	-	-	-
TBC1D4	0	genome.wustl.edu	37	13	75936460	75936460	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	13	75936460	75936460	C	T	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	missense	c.782	p.G261E	0.000	smart_PTyr_interaction_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	27	0	0.00	19	4	17.39	-	-	-
TG	0	genome.wustl.edu	37	8	133910025	133910025	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	133910025	133910025	G	A	SNP	TG	ENST00000523756	human	ensembl	69_37n	+1	known	nonsense	c.92	p.W31*	0.005	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TG	HGNC	ENSG00000042832	27	0	0.00	31	19	38.00	-	-	-
TG	0	genome.wustl.edu	37	8	133953777	133953777	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	133953777	133953777	G	C	SNP	TG	ENST00000220616	human	ensembl	69_37n	+1	known	missense	c.5223	p.Q1741H	0.200	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	44	0	0.00	41	26	38.81	-	-	-
TMED2	0	genome.wustl.edu	37	12	124074976	124074976	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	124074976	124074976	G	A	SNP	TMED2	ENST00000262225	human	ensembl	69_37n	+1	known	missense	c.461	p.R154Q	1.000	pfam_GOLD	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED2	HGNC	ENSG00000086598	76	0	0.00	50	12	19.35	-	-	-
TMEM87A	0	genome.wustl.edu	37	15	42531871	42531871	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	15	42531871	42531871	C	T	SNP	TMEM87A	ENST00000389834	human	ensembl	69_37n	-1	known	missense	c.681	p.M227I	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	TMEM87A	HGNC	ENSG00000103978	80	0	0.00	36	11	23.40	-	-	-
TMOD3	0	genome.wustl.edu	37	15	52181319	52181319	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	15	52181319	52181319	G	A	SNP	TMOD3	ENST00000308580	human	ensembl	69_37n	+1	known	missense	c.473	p.G158D	1.000	NULL	pfam_Tropomodulin	-	no_errors	TMOD3	HGNC	ENSG00000138594	66	0	0.00	45	7	13.46	-	-	-
TTN	0	genome.wustl.edu	37	2	179408789	179408789	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	179408789	179408789	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.88378	p.A29460S	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	75	0	0.00	53	11	17.19	-	-	-
UGDH	0	genome.wustl.edu	37	4	39505533	39505533	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	4	39505533	39505533	C	T	SNP	UGDH	ENST00000316423	human	ensembl	69_37n	-1	known	missense	c.1336	p.D446N	1.000	pfam_UDP-Glc/GDP-Man_DH_C,superfamily_UDP-Glc/GDP-Man_DH_C	pfam_UDP-Glc/GDP-Man_DH_N,pfam_UDP-Glc/GDP-Man_DH_C,pfam_UDP-Glc/GDP-Man_DH_dimer,superfamily_UDP-Glc/GDP-Man_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_Nucleotide_sugar_DH	-	no_errors	UGDH	HGNC	ENSG00000109814	69	0	0.00	54	7	11.48	-	-	-
USP32P2	0	genome.wustl.edu	37	17	18422903	18422903	+	RNA	SNP	G	G	C			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	18422903	18422903	G	C	SNP	USP32P2	ENST00000412260	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	USP32P2	HGNC	ENSG00000233327	53	0	0.00	25	27	51.92	-	-	-
WISP1	0	genome.wustl.edu	37	8	134237778	134237778	+	Silent	SNP	C	C	A			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	134237778	134237778	C	A	SNP	WISP1	ENST00000250160	human	ensembl	69_37n	+1	known	silent	c.756	p.R252	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415	32	0	0.00	29	4	12.12	-	-	-
ZFYVE19	0	genome.wustl.edu	37	15	41099910	41099910	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	15	41099910	41099910	A	G	SNP	ZFYVE19	ENST00000568062	human	ensembl	69_37n	+1	known	missense	c.71	p.Q24R	0.000	NULL	superfamily_Znf_FYVE_PHD	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZFYVE19	HGNC	ENSG00000166140	20	0	0.00	20	5	20.00	-	-	-
ZNF544	0	genome.wustl.edu	37	19	58773419	58773419	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	19	58773419	58773419	A	G	SNP	ZNF544	ENST00000269829	human	ensembl	69_37n	+1	known	missense	c.1447	p.K483E	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131	64	0	0.00	51	11	17.74	-	-	-
