Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
AADACL3	126767	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	12785730	12785730	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ABCA12	26154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	215868936	215868936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ABCA2	20	broad.mit.edu;hgsc.bcm.edu	37	9	139916407	139916407	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ADAMTS7	11173	broad.mit.edu;hgsc.bcm.edu	37	15	79058756	79058756	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ADCYAP1R1	117	hgsc.bcm.edu;ucsc.edu	37	7	31142950	31142959	+	Frame_Shift_Del	DEL	CGTGTTTGAG	CGTGTTTGAG	-	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	CGTGTTTGAG	CGTGTTTGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
AICDA	57379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	8758017	8758017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ANGPTL7	10218	hgsc.bcm.edu;ucsc.edu	37	1	11249984	11249984	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ANKRD44	91526	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	197953472	197953473	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ARNTL	406	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	13375946	13375946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ATP1A1	476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	116932982	116932982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ATPAF2	91647	hgsc.bcm.edu;ucsc.edu	37	17	17927959	17927961	+	In_Frame_Del	DEL	ATT	ATT	-	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	ATT	ATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
B9D1	27077	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	19250621	19250621	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
C16orf71	146562	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4787820	4787820	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
C1orf63	57035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	25573155	25573160	+	In_Frame_Del	DEL	GAACCC	GAACCC	-	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	GAACCC	GAACCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
CASP10	843	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	202060612	202060612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
CCDC41	51134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	94772668	94772668	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
CDK2	1017	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56363264	56363265	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
CDK2	1017	hgsc.bcm.edu	37	12	56363267	56363267	+	Silent	SNP	C	C	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
CHD5	26038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	6170533	6170533	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
CPLX2	10814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	175306865	175306865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
CTSE	1510	broad.mit.edu;hgsc.bcm.edu	37	1	206325277	206325277	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
CYFIP2	26999	broad.mit.edu;hgsc.bcm.edu	37	5	156746796	156746796	+	Silent	SNP	G	G	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
DCDC5	100506627	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	30953424	30953424	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
DMD	1756	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	31241191	31241191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
DMXL2	23312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51791649	51791649	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
DNAH3	55567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	21123085	21123085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
DNAJB4	11080	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	78478852	78478852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
E2F8	79733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	19247052	19247052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
EHD3	30845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	31484438	31484438	+	Silent	SNP	T	T	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ENHO	375704	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	34521629	34521629	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ENO1	2023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	8926510	8926510	+	Missense_Mutation	SNP	C	C	A	rs11544509	alternate_allele	TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
EPYC	1833	broad.mit.edu;hgsc.bcm.edu	37	12	91366748	91366748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
FBF1	85302	broad.mit.edu;hgsc.bcm.edu	37	17	73913852	73913852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
FOLH1B	219595	hgsc.bcm.edu	37	11	89424222	89424223	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
FOXK1	221937	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	4796681	4796681	+	Silent	SNP	C	C	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
FRS2	10818	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	69965989	69965989	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
FTSJ2	29960	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	2274853	2274853	+	Silent	SNP	T	T	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
GALNT3	2591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	166611170	166611170	+	Silent	SNP	A	A	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
GLCCI1	113263	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	8126006	8126006	+	Silent	SNP	T	T	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
GOLIM4	27333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	167750471	167750471	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
GULP1	51454	broad.mit.edu;hgsc.bcm.edu	37	2	189458666	189458666	+	Splice_Site	SNP	G	G	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
HEPH	9843	hgsc.bcm.edu	37	X	65393494	65393495	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
HFM1	164045	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	91818686	91818686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
HSP90AB1	3326	broad.mit.edu;hgsc.bcm.edu	37	6	44218220	44218220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
HSPA12A	259217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	118434631	118434631	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
HTT	3064	hgsc.bcm.edu;ucsc.edu	37	4	3117148	3117160	+	Frame_Shift_Del	DEL	AGTTGGCTACTAA	AGTTGGCTACTAA	-	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	AGTTGGCTACTAA	AGTTGGCTACTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
IPP	3652	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	46180107	46180115	+	In_Frame_Del	DEL	ATTGCTGAT	ATTGCTGAT	-	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	ATTGCTGAT	ATTGCTGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
KIF16B	55614	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	16359478	16359478	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
KLHL26	55295	hgsc.bcm.edu	37	19	18778933	18778937	+	Frame_Shift_Del	DEL	GCGCG	GCGCG	-	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	GCGCG	GCGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
LDHAL6B	92483	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	59499176	59499176	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
LILRB4	11006	hgsc.bcm.edu	37	19	55179244	55179244	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
LRRC32	2615	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	76371567	76371567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
MAP2K7	5609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	7977212	7977212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
MAP4	4134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	48019414	48019414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
MAVS	57506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	3845153	3845153	+	Silent	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
MFSD6	54842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	191301590	191301590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
MSC	9242	broad.mit.edu;hgsc.bcm.edu	37	8	72756043	72756043	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
MYST4	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	76748798	76748798	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
NCOA1	8648	hgsc.bcm.edu;ucsc.edu	37	2	24929598	24929598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
NF1	4763	broad.mit.edu;hgsc.bcm.edu	37	17	29556075	29556075	+	Silent	SNP	G	G	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
NF1	4763	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	29687570	29687570	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
OR10S1	219873	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	123848361	123848361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
OR2L8	391190	broad.mit.edu;hgsc.bcm.edu	37	1	248112339	248112339	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
OR2T27	403239	broad.mit.edu;hgsc.bcm.edu	37	1	248813490	248813490	+	Silent	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
OTOF	9381	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	26703722	26703722	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52662912	52662912	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
PDE4DIP	9659	broad.mit.edu;hgsc.bcm.edu	37	1	144857634	144857634	+	Silent	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
PDLIM4	8572	broad.mit.edu;hgsc.bcm.edu	37	5	131598428	131598428	+	Missense_Mutation	SNP	G	G	T	rs138635559	alternate_allele	TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
PHF12	57649	broad.mit.edu;hgsc.bcm.edu	37	17	27250942	27250942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
PHTF1	10745	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	114252891	114252891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
PLTP	5360	broad.mit.edu;hgsc.bcm.edu	37	20	44531163	44531163	+	Silent	SNP	G	G	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
POLK	51426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	74889874	74889874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
RNH1	6050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	499015	499015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
SALL3	27164	hgsc.bcm.edu	37	18	76752151	76752151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
SCN10A	6336	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38797338	38797338	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
SCNN1A	6337	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6457292	6457292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
SFRP4	6424	hgsc.bcm.edu	37	7	37947147	37947148	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
SLC26A4	5172	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	107329537	107329537	+	Silent	SNP	G	G	A	rs140778437		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
SMC3	9126	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	112335137	112335137	+	Silent	SNP	A	A	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
SNED1	25992	broad.mit.edu;hgsc.bcm.edu	37	2	241974046	241974046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
SNORD52	26797	broad.mit.edu;hgsc.bcm.edu	37	6	31804867	31804867	+	RNA	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
SNRPB	6628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	2448399	2448399	+	Silent	SNP	C	C	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
SOHLH1	402381	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	138586216	138586216	+	Silent	SNP	C	C	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
SOHLH1	402381	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	138586217	138586217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
SORD	6652	hgsc.bcm.edu	37	15	45361216	45361216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
SPEF2	79925	hgsc.bcm.edu;ucsc.edu	37	5	35700726	35700726	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
STARD7	56910	broad.mit.edu;hgsc.bcm.edu	37	2	96861119	96861119	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
STRBP	55342	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	125936121	125936121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
TARS2	80222	broad.mit.edu;hgsc.bcm.edu	37	1	150476838	150476838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
TCOF1	6949	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	149749096	149749096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
THSD1	55901	hgsc.bcm.edu	37	13	52952072	52952073	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
TNK1	8711	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7291835	7291835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
TRPC7	57113	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	135692925	135692925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179600277	179600277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
TUBB1	81027	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	57599336	57599336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
UBA7	7318	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49847308	49847308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
USH2A	7399	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	216380760	216380760	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
UTRN	7402	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	144780343	144780343	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188200	10188200	+	Missense_Mutation	SNP	C	C	A	rs5030811	bycluster;alternate_allele	TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
VPS11	55823	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118948939	118948939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
WDFY3	23001	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	85731357	85731357	+	Silent	SNP	C	C	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
WDTC1	23038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	27621085	27621085	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
WIPI2	26100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	5270558	5270558	+	Missense_Mutation	SNP	A	A	G	rs144773383	byfrequency;alternate_allele	TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ZNF292	23036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	87970890	87970890	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ZNF347	84671	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53644453	53644453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ZNF451	26036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	57013213	57013213	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ZUFSP	221302	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	116979974	116979974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ANKRD20B	0	broad.mit.edu	37	2	95497757	95497757	+	RNA	SNP	C	G	G	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
ATP2B2	491	broad.mit.edu	37	3	10401807	10401807	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
C1orf94	84970	broad.mit.edu	37	1	34666597	34666597	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
FNDC1	84624	broad.mit.edu	37	6	159653887	159653887	+	Silent	SNP	G	T	T	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
KRTAP4-9	100132386	broad.mit.edu	37	17	39261693	39261693	+	Missense_Mutation	SNP	A	T	T	rs113059833	bycluster	TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
MALAT1	378938	broad.mit.edu	37	11	65270349	65270349	+	RNA	SNP	T	C	C	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
PRAMEF10	343071	broad.mit.edu	37	1	12954436	12954436	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
Unknown	0	broad.mit.edu	37	16	90161578	90161578	+	Silent	SNP	G	A	A	rs13337896	bycluster;by2hit2allele	TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
CDC27	996	broad.mit.edu	37	17	45234696	45234696	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3382-01A-01D-0966-08	TCGA-A3-3382-11A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	f10e1718-6fb8-4c08-bc28-439f26355cd2	9e5e7403-d655-4c63-b938-e8140224dd7a	
