Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AFF4	0	genome.wustl.edu	37	5	132232866	132232866	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	5	132232866	132232866	C	T	SNP	AFF4	ENST00000265343	human	ensembl	69_37n	-1	known	missense	c.1456	p.V486M	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF4	HGNC	ENSG00000072364	137	0	0.00	179	121	40.33	-	-	-
ASXL1	0	genome.wustl.edu	37	20	31023224	31023224	+	Silent	SNP	G	G	T			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	20	31023224	31023224	G	T	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	+1	known	silent	c.2709	p.S903	0.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	168	0	0.00	59	47	44.34	-	-	-
ATG9B	0	genome.wustl.edu	37	7	150718275	150718276	+	RNA	INS	-	-	G			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	7	150718275	150718276	-	G	INS	ATG9B	ENST00000377974	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	ATG9B	HGNC	ENSG00000181652	18	0	0.00	6	2	25.00	-	-	-
C1orf53	0	genome.wustl.edu	37	1	197875018	197875018	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	1	197875018	197875018	G	A	SNP	C1orf53	ENST00000436652	human	ensembl	69_37n	+1	putative	missense	c.166	p.V56M	0.997	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C1orf53	HGNC	ENSG00000203724	197	0	0.00	112	23	17.04	-	-	-
CARD11	0	genome.wustl.edu	37	7	2983933	2983933	+	Silent	SNP	G	G	A			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	7	2983933	2983933	G	A	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	silent	c.597	p.D199	0.968	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	77	0	0.00	13	42	76.36	-	-	-
CBX4	0	genome.wustl.edu	37	17	77808750	77808751	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	17	77808750	77808751	-	G	INS	CBX4	ENST00000269397	human	ensembl	69_37n	-1	known	frame_shift_ins	c.691_690	p.N230fs	1.000:1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,prints_Chromo_dom_subgr,pfscan_Chromo_domain/shadow	-	no_errors	CBX4	HGNC	ENSG00000141582	21	0	0.00	14	2	12.50	-	-	-
CD200R1	0	genome.wustl.edu	37	3	112648015	112648015	+	Missense_Mutation	SNP	C	C	G			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	3	112648015	112648015	C	G	SNP	CD200R1	ENST00000440122	human	ensembl	69_37n	-1	known	missense	c.542	p.R181T	0.001	NULL	NULL	-	no_errors	CD200R1	HGNC	ENSG00000163606	561	0	0.00	337	257	43.27	-	-	-
CERS3	0	genome.wustl.edu	37	15	101009639	101009639	+	Silent	SNP	C	C	T			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	15	101009639	101009639	C	T	SNP	CERS3	ENST00000284382	human	ensembl	69_37n	-1	known	silent	c.789	p.L263	0.999	pirsf_Longevity_assurance_LAG1_LAC1,pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pirsf_Longevity_assurance_LAG1_LAC1,pfam_TLC-dom,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,smart_TLC-dom,pfscan_TLC-dom,pfscan_Homeodomain	-	no_errors	CERS3	HGNC	ENSG00000154227	155	0	0.00	98	77	44.00	-	-	-
CHD6	0	genome.wustl.edu	37	20	40050464	40050464	+	Missense_Mutation	SNP	G	G	C			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	20	40050464	40050464	G	C	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.4811	p.P1604R	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	88	0	0.00	73	53	42.06	-	-	-
COG1	0	genome.wustl.edu	37	17	71199175	71199175	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	17	71199175	71199175	G	A	SNP	COG1	ENST00000299886	human	ensembl	69_37n	+1	known	missense	c.2110	p.D704N	0.796	NULL	pfam_Vps51	-	no_errors	COG1	HGNC	ENSG00000166685	49	0	0.00	46	60	56.60	-	-	-
CPSF4	0	genome.wustl.edu	37	7	99054076	99054076	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	7	99054076	99054076	G	A	SNP	CPSF4	ENST00000292476	human	ensembl	69_37n	+1	known	missense	c.763	p.A255T	1.000	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	pfam_Znf_CCCH,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCCH,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	CPSF4	HGNC	ENSG00000160917	34	0	0.00	5	20	80.00	-	-	-
DYSF	0	genome.wustl.edu	37	2	71839796	71839797	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	2	71839796	71839797	-	C	INS	DYSF	ENST00000413539	human	ensembl	69_37n	+1	known	frame_shift_ins	c.4286_4287	p.I1432fs	1.000:0.989	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	43	0	0.00	45	6	11.76	-	-	-
FGF18	0	genome.wustl.edu	37	5	170883698	170883698	+	Silent	SNP	C	C	T			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	5	170883698	170883698	C	T	SNP	FGF18	ENST00000274625	human	ensembl	69_37n	+1	known	silent	c.513	p.D171	0.882	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF18	HGNC	ENSG00000156427	47	0	0.00	19	19	50.00	-	-	-
FOXM1	0	genome.wustl.edu	37	12	2977870	2977870	+	Silent	SNP	C	C	T			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	12	2977870	2977870	C	T	SNP	FOXM1	ENST00000342628	human	ensembl	69_37n	-1	known	silent	c.705	p.E235	0.613	smart_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206	106	0	0.00	90	76	45.78	-	-	-
GYG2	0	genome.wustl.edu	37	X	2779579	2779580	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	X	2779579	2779580	-	G	INS	GYG2	ENST00000381163	human	ensembl	69_37n	+1	known	frame_shift_ins	c.947_948	p.P319fs	0.000:0.000	NULL	pfam_Glyco_trans_8	-	no_errors	GYG2	HGNC	ENSG00000056998	27	0	0.00	19	4	17.39	-	-	-
HSD11B2	0	genome.wustl.edu	37	16	67470244	67470245	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	16	67470244	67470245	-	G	INS	HSD11B2	ENST00000326152	human	ensembl	69_37n	+1	known	frame_shift_ins	c.757_758	p.V255fs	1.000:1.000	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH	-	no_errors	HSD11B2	HGNC	ENSG00000176387	43	0	0.00	18	2	10.00	-	-	-
LAMB1	0	genome.wustl.edu	37	7	107638937	107638937	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	7	107638937	107638937	C	T	SNP	LAMB1	ENST00000222399	human	ensembl	69_37n	-1	known	missense	c.214	p.E72K	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	126	0	0.00	22	14	38.89	-	-	-
LPHN2	0	genome.wustl.edu	37	1	82456779	82456779	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	1	82456779	82456779	C	A	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	+1	known	missense	c.4375	p.P1459T	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	84	0	0.00	65	24	26.97	-	-	-
LTBP2	0	genome.wustl.edu	37	14	74967606	74967607	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	14	74967606	74967607	-	G	INS	LTBP2	ENST00000261978	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5447_5446	p.H1816fs	0.813:0.817	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681	26	0	0.00	22	4	15.38	-	-	-
MYH3	0	genome.wustl.edu	37	17	10543517	10543517	+	Silent	SNP	C	C	T			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	17	10543517	10543517	C	T	SNP	MYH3	ENST00000226209	human	ensembl	69_37n	-1	known	silent	c.2478	p.K826	0.999	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH3	HGNC	ENSG00000109063	231	0	0.00	33	93	73.81	-	-	-
NEURL4	0	genome.wustl.edu	37	17	7227492	7227492	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	17	7227492	7227492	G	A	SNP	NEURL4	ENST00000399464	human	ensembl	69_37n	-1	known	missense	c.1997	p.P666L	0.998	superfamily_ConA-like_lec_gl,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041	22	0	0.00	7	5	41.67	-	-	-
NIPBL	0	genome.wustl.edu	37	5	37006526	37006526	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	5	37006526	37006526	C	T	SNP	NIPBL	ENST00000282516	human	ensembl	69_37n	+1	known	missense	c.3923	p.A1308V	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	102	0	0.00	60	31	34.07	-	-	-
NLRP10	0	genome.wustl.edu	37	11	7982638	7982638	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	11	7982638	7982638	G	A	SNP	NLRP10	ENST00000328600	human	ensembl	69_37n	-1	known	missense	c.521	p.S174L	0.000	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP10	HGNC	ENSG00000182261	106	0	0.00	110	77	41.18	-	-	-
ORMDL3	0	genome.wustl.edu	37	17	38079470	38079470	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	17	38079470	38079470	G	A	SNP	ORMDL3	ENST00000304046	human	ensembl	69_37n	-1	known	missense	c.221	p.T74I	1.000	pfam_ORMDL,pirsf_ORMDL	pfam_ORMDL,pirsf_ORMDL	-	no_errors	ORMDL3	HGNC	ENSG00000172057	93	0	0.00	74	19	20.43	-	-	-
PHKA2	0	genome.wustl.edu	37	X	18954268	18954268	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	X	18954268	18954268	C	A	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	missense	c.1042	p.V348F	1.000	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	26	0	0.00	25	8	24.24	-	-	-
PLXNA1	0	genome.wustl.edu	37	3	126724942	126724943	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	3	126724942	126724943	CT	-	DEL	PLXNA1	ENST00000393409	human	ensembl	69_37n	+1	known	frame_shift_del	c.1918_1919	p.Y641fs	1.000:1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	9	0	0.00	1	3	75.00	-	-	-
POLA1	0	genome.wustl.edu	37	X	24859809	24859809	+	Missense_Mutation	SNP	A	A	T			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	X	24859809	24859809	A	T	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	+1	known	missense	c.3777	p.K1259N	1.000	NULL	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	193	0	0.00	53	70	56.91	-	-	-
POLR2A	0	genome.wustl.edu	37	17	7412461	7412461	+	Missense_Mutation	SNP	A	A	G			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	17	7412461	7412461	A	G	SNP	POLR2A	ENST00000322644	human	ensembl	69_37n	+1	known	missense	c.3664	p.T1222A	1.000	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_7	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	86	0	0.00	3	37	92.50	-	-	-
PRKRIR	0	genome.wustl.edu	37	11	76062581	76062581	+	Missense_Mutation	SNP	T	T	A			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	11	76062581	76062581	T	A	SNP	PRKRIR	ENST00000260045	human	ensembl	69_37n	-1	known	missense	c.1613	p.E538V	1.000	superfamily_RNaseH-like_dom	pfam_Znf_C2CH,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	PRKRIR	HGNC	ENSG00000137492	221	0	0.00	199	134	40.24	-	-	-
RGPD3	0	genome.wustl.edu	37	2	107051114	107051116	+	In_Frame_Del	DEL	AAC	AAC	-			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	2	107051114	107051116	AAC	-	DEL	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	in_frame_del	c.2037_2035	p.V679in_frame_del	1.000:1.000:1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	8	0	0.00	5	3	37.50	-	-	-
SCN4A	0	genome.wustl.edu	37	17	62034875	62034875	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	17	62034875	62034875	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	missense	c.2023	p.R675W	0.998	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	26	0	0.00	12	20	62.50	-	-	-
TRBV7-3	0	genome.wustl.edu	37	7	142247224	142247224	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	7	142247224	142247224	C	T	SNP	TRBV7-3	ENST00000390361	human	ensembl	69_37n	-1	known	missense	c.232	p.G78R	0.085	pfam_Ig_V-set,pfscan_Ig-like	pfam_Ig_V-set,pfscan_Ig-like	-	no_stop_codon:bad_bp_length_for_coding_region	TRBV7-3	HGNC	ENSG00000211714	159	0	0.00	90	60	39.74	-	-	-
TRBV7-3	0	genome.wustl.edu	37	7	142247229	142247229	+	Missense_Mutation	SNP	T	T	A			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	7	142247229	142247229	T	A	SNP	TRBV7-3	ENST00000390361	human	ensembl	69_37n	-1	known	missense	c.227	p.D76V	0.000	pfam_Ig_V-set,pfscan_Ig-like	pfam_Ig_V-set,pfscan_Ig-like	-	no_stop_codon:bad_bp_length_for_coding_region	TRBV7-3	HGNC	ENSG00000211714	164	0	0.00	89	58	39.19	-	-	-
ZC3H12A	0	genome.wustl.edu	37	1	37941282	37941282	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	1	37941282	37941282	C	-	DEL	ZC3H12A	ENST00000373082	human	ensembl	69_37n	+1	known	frame_shift_del	c.185	p.T63fs	0.013	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874	37	0	0.00	10	2	16.67	-	-	-
ZNF208	0	genome.wustl.edu	37	19	22157191	22157191	+	Silent	SNP	G	G	T			TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d29ba065-28ca-4dfb-9588-06be857f67b2	1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf	19	22157191	22157191	G	T	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	silent	c.645	p.T215	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	501	1	0.20	308	199	39.25	-	-	-
