Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AFF3	0	genome.wustl.edu	37	2	100194818	100194820	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	2	100194818	100194820	GCA	-	DEL	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	in_frame_del	c.2964_2962	p.C988in_frame_del	1.000:1.000:1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	126	0	0.00	105	29	21.48	-	-	-
AFF3	0	genome.wustl.edu	37	2	100194823	100194824	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	2	100194823	100194824	CC	-	DEL	AFF3	ENST00000356421	human	ensembl	69_37n	-1	known	frame_shift_del	c.2959_2958	p.D987fs	1.000:0.993	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	124	0	0.00	79	27	25.47	-	-	-
ANKRD12	0	genome.wustl.edu	37	18	9256071	9256074	+	Frame_Shift_Del	DEL	AAAC	AAAC	-			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	AAAC	AAAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	18	9256071	9256074	AAAC	-	DEL	ANKRD12	ENST00000262126	human	ensembl	69_37n	+1	known	frame_shift_del	c.2806_2809	p.K936fs	0.913:0.899:0.061:0.032	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	206	0	0.00	324	150	31.65	-	-	-
BIRC8	0	genome.wustl.edu	37	19	53793429	53793429	+	Missense_Mutation	SNP	T	T	C			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	19	53793429	53793429	T	C	SNP	BIRC8	ENST00000426466	human	ensembl	69_37n	-1	known	missense	c.199	p.K67E	0.068	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC8	HGNC	ENSG00000163098	164	0	0.00	130	18	12.16	-	-	-
C12orf65	0	genome.wustl.edu	37	12	123738230	123738230	+	Silent	SNP	C	C	T			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	12	123738230	123738230	C	T	SNP	C12orf65	ENST00000253233	human	ensembl	69_37n	+1	known	silent	c.9	p.T3	0.002	NULL	pfam_Pep_chain_release_fac_I_II	-	no_errors	C12orf65	HGNC	ENSG00000130921	103	0	0.00	43	50	53.76	-	-	-
CAPN7	0	genome.wustl.edu	37	3	15270481	15270481	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	3	15270481	15270481	A	G	SNP	CAPN7	ENST00000253693	human	ensembl	69_37n	+1	known	missense	c.853	p.T285A	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_MIT,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_MIT,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN7	HGNC	ENSG00000131375	247	1	0.40	263	158	37.44	-	-	-
CASZ1	0	genome.wustl.edu	37	1	10719985	10719985	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	1	10719985	10719985	G	A	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	missense	c.1114	p.R372C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	45	0	0.00	32	7	17.95	-	-	-
CSF1R	0	genome.wustl.edu	37	5	149449828	149449828	+	Silent	SNP	G	G	A			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	5	149449828	149449828	G	A	SNP	CSF1R	ENST00000286301	human	ensembl	69_37n	-1	known	silent	c.1236	p.N412	0.019	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	CSF1R	HGNC	ENSG00000182578	110	1	0.90	26	15	36.59	-	-	-
CSMD1	0	genome.wustl.edu	37	8	2820779	2820779	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	8	2820779	2820779	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.9422	p.R3141H	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	127	1	0.78	46	57	55.34	-	-	-
DCHS2	0	genome.wustl.edu	37	4	155242003	155242003	+	Silent	SNP	C	C	T			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	4	155242003	155242003	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	silent	c.3183	p.V1061	0.980	pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	357	0	0.00	534	73	12.03	-	-	-
DYNC1H1	0	genome.wustl.edu	37	14	102467927	102467927	+	Missense_Mutation	SNP	G	G	C			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	14	102467927	102467927	G	C	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	+1	known	missense	c.4451	p.C1484S	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	106	0	0.00	97	27	21.77	-	-	-
FUBP3	0	genome.wustl.edu	37	9	133493263	133493263	+	Missense_Mutation	SNP	G	G	T			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	9	133493263	133493263	G	T	SNP	FUBP3	ENST00000319725	human	ensembl	69_37n	+1	known	missense	c.647	p.G216V	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP3	HGNC	ENSG00000107164	40	0	0.00	11	26	70.27	-	-	-
FUBP3	0	genome.wustl.edu	37	9	133498185	133498185	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	9	133498185	133498185	C	T	SNP	FUBP3	ENST00000319725	human	ensembl	69_37n	+1	known	nonsense	c.862	p.Q288*	1.000	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP3	HGNC	ENSG00000107164	158	0	0.00	67	56	45.53	-	-	-
GPR137C	0	genome.wustl.edu	37	14	53098946	53098946	+	Missense_Mutation	SNP	T	T	C			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	14	53098946	53098946	T	C	SNP	GPR137C	ENST00000555622	human	ensembl	69_37n	+1	novel	missense	c.581	p.V194A	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GPR137C	HGNC	ENSG00000180998	77	0	0.00	33	70	67.31	-	-	-
HLA-B	0	genome.wustl.edu	37	6	31324601	31324602	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	6	31324601	31324602	-	A	INS	HLA-B	ENST00000412585	human	ensembl	69_37n	-1	known	frame_shift_ins	c.207_206	p.E69fs	0.090:0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-B	HGNC	ENSG00000234745	16	0	0.00	5	3	37.50	-	-	-
MYEOV	0	genome.wustl.edu	37	11	69063518	69063519	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	11	69063518	69063519	-	A	INS	MYEOV	ENST00000308946	human	ensembl	69_37n	+1	known	frame_shift_ins	c.601_602	p.V201fs	0.000:0.000	NULL	NULL	-	no_errors	MYEOV	HGNC	ENSG00000172927	32	0	0.00	38	25	39.68	-	-	-
NEDD4L	0	genome.wustl.edu	37	18	56033400	56033400	+	Missense_Mutation	SNP	T	T	A			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	18	56033400	56033400	T	A	SNP	NEDD4L	ENST00000400345	human	ensembl	69_37n	+1	known	missense	c.2003	p.F668Y	1.000	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759	62	0	0.00	48	19	27.94	-	-	-
NEURL4	0	genome.wustl.edu	37	17	7226882	7226882	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	17	7226882	7226882	C	G	SNP	NEURL4	ENST00000399464	human	ensembl	69_37n	-1	known	missense	c.2339	p.G780A	1.000	pfam_Neu_Z,superfamily_ConA-like_lec_gl,smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041	26	0	0.00	1	6	85.71	-	-	-
NXT2	0	genome.wustl.edu	37	X	108785738	108785738	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	X	108785738	108785738	C	G	SNP	NXT2	ENST00000218004	human	ensembl	69_37n	+1	known	missense	c.415	p.Q139E	1.000	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXT2	HGNC	ENSG00000101888	249	0	0.00	213	112	34.25	-	-	-
PALM2-AKAP2	0	genome.wustl.edu	37	9	112694275	112694275	+	Missense_Mutation	SNP	T	T	A			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	9	112694275	112694275	T	A	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	69_37n	+1	known	missense	c.463	p.S155T	0.683	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654	169	0	0.00	220	31	12.25	-	-	-
PCDHB12	0	genome.wustl.edu	37	5	140590170	140590170	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	5	140590170	140590170	C	T	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	+1	known	missense	c.1691	p.P564L	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	25	0	0.00	18	9	33.33	-	-	-
PDE9A	0	genome.wustl.edu	37	21	44119099	44119099	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	21	44119099	44119099	T	-	DEL	PDE9A	ENST00000291539	human	ensembl	69_37n	+1	known	frame_shift_del	c.240	p.V81fs	0.086	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE9A	HGNC	ENSG00000160191	78	0	0.00	39	29	40.28	-	-	-
PKN1	0	genome.wustl.edu	37	19	14569083	14569083	+	Silent	SNP	C	C	A			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	19	14569083	14569083	C	A	SNP	PKN1	ENST00000342216	human	ensembl	69_37n	+1	known	silent	c.1333	p.R445	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN1	HGNC	ENSG00000123143	77	0	0.00	33	47	58.75	-	-	-
PMEPA1	0	genome.wustl.edu	37	20	56228121	56228121	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	20	56228121	56228121	C	G	SNP	PMEPA1	ENST00000341744	human	ensembl	69_37n	-1	known	missense	c.286	p.E96Q	0.997	NULL	NULL	-	no_errors	PMEPA1	HGNC	ENSG00000124225	8	0	0.00	7	5	41.67	-	-	-
RGS7	0	genome.wustl.edu	37	1	241094016	241094016	+	Splice_Site	SNP	C	C	T			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	1	241094016	241094016	C	T	SNP	RGS7	ENST00000407727	human	ensembl	69_37n	-1	known	splice_site	c.385+1	e5+1	1.000	-	-	-	no_errors	RGS7	HGNC	ENSG00000182901	505	0	0.00	346	182	34.47	-	-	-
SEPT2	0	genome.wustl.edu	37	2	242276852	242276852	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	2	242276852	242276852	G	A	SNP	SEPT2	ENST00000360051	human	ensembl	69_37n	+1	known	missense	c.397	p.E133K	1.000	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pirsf_Septin,prints_Septin2	-	no_errors	SEPT2	HGNC	ENSG00000168385	482	0	0.00	262	233	47.07	-	-	-
SLC13A3	0	genome.wustl.edu	37	20	45188713	45188713	+	Missense_Mutation	SNP	T	T	C			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	20	45188713	45188713	T	C	SNP	SLC13A3	ENST00000279027	human	ensembl	69_37n	-1	known	missense	c.1757	p.N586S	0.261	NULL	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296	183	0	0.00	104	56	34.78	-	-	-
SLC22A15	0	genome.wustl.edu	37	1	116609327	116609327	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	1	116609327	116609327	C	T	SNP	SLC22A15	ENST00000369503	human	ensembl	69_37n	+1	known	nonsense	c.1552	p.Q518*	0.994	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A15	HGNC	ENSG00000163393	57	0	0.00	50	12	19.35	-	-	-
SPANXN3	0	genome.wustl.edu	37	X	142596806	142596806	+	Silent	SNP	G	G	A			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	X	142596806	142596806	G	A	SNP	SPANXN3	ENST00000370503	human	ensembl	69_37n	-1	known	silent	c.264	p.G88	0.002	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN3	HGNC	ENSG00000189252	2755	2	0.07	2420	1853	43.19	-	-	-
TEAD2	0	genome.wustl.edu	37	19	49850472	49850473	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	19	49850472	49850473	-	G	INS	TEAD2	ENST00000377214	human	ensembl	69_37n	-1	known	frame_shift_ins	c.893_892	p.H298fs	0.971:0.961	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219	107	1	0.93	98	11	10.09	-	-	-
THBS3	0	genome.wustl.edu	37	1	155169883	155169883	+	Missense_Mutation	SNP	T	T	A			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	1	155169883	155169883	T	A	SNP	THBS3	ENST00000368378	human	ensembl	69_37n	-1	known	missense	c.1730	p.N577I	1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231	71	0	0.00	46	41	47.13	-	-	-
TIAF1	0	genome.wustl.edu	37	17	27401124	27401124	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	17	27401124	27401124	C	T	SNP	TIAF1	ENST00000359450	human	ensembl	69_37n	-1	known	missense	c.94	p.E32K	0.000	NULL	NULL	-	no_errors	TIAF1	HGNC	ENSG00000221995	82	0	0.00	69	49	41.53	-	-	-
TIGD4	0	genome.wustl.edu	37	4	153690942	153690942	+	Silent	SNP	C	C	G			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	4	153690942	153690942	C	G	SNP	TIGD4	ENST00000304337	human	ensembl	69_37n	-1	known	silent	c.1215	p.L405	0.002	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,pfam_Centromere_CenpB_dimerisation,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD4	HGNC	ENSG00000169989	238	0	0.00	127	111	46.64	-	-	-
TMEM143	0	genome.wustl.edu	37	19	48845963	48845963	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	19	48845963	48845963	G	A	SNP	TMEM143	ENST00000293261	human	ensembl	69_37n	-1	known	missense	c.799	p.P267S	1.000	pfam_DUF3754	pfam_DUF3754	-	no_errors	TMEM143	HGNC	ENSG00000161558	55	0	0.00	21	18	46.15	-	-	-
UBFD1	0	genome.wustl.edu	37	16	23573549	23573549	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	16	23573549	23573549	A	G	SNP	UBFD1	ENST00000219638	human	ensembl	69_37n	+1	known	missense	c.1259	p.K420R	1.000	NULL	pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	UBFD1	HGNC	ENSG00000103353	80	0	0.00	73	57	43.85	-	-	-
ZNF419	0	genome.wustl.edu	37	19	58005412	58005412	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	19	58005412	58005412	C	T	SNP	ZNF419	ENST00000424930	human	ensembl	69_37n	+1	known	missense	c.1490	p.S497F	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF419	HGNC	ENSG00000105136	317	0	0.00	165	131	44.26	-	-	-
ZNF48	0	genome.wustl.edu	37	16	30409119	30409119	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	16	30409119	30409119	C	T	SNP	ZNF48	ENST00000320159	human	ensembl	69_37n	+1	known	missense	c.548	p.S183F	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035	40	0	0.00	30	28	48.28	-	-	-
