Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACOXL	0	genome.wustl.edu	37	2	111562844	111562844	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	2	111562844	111562844	G	C	SNP	ACOXL	ENST00000439055	human	ensembl	69_37n	+1	known	missense	c.625	p.G209R	1.000	superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOXL	HGNC	ENSG00000153093	33	0	0.00	33	8	19.51	-	-	-
ACTG1	0	genome.wustl.edu	37	17	79478936	79478936	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	17	79478936	79478936	A	G	SNP	ACTG1	ENST00000331925	human	ensembl	69_37n	-1	known	missense	c.356	p.M119T	1.000	pfam_Actin-like,smart_Actin-like,prints_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTG1	HGNC	ENSG00000184009	31	0	0.00	36	11	23.40	-	-	-
ACTRT1	0	genome.wustl.edu	37	X	127185892	127185892	+	Silent	SNP	T	T	A			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	X	127185892	127185892	T	A	SNP	ACTRT1	ENST00000371124	human	ensembl	69_37n	-1	known	silent	c.294	p.G98	0.208	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTRT1	HGNC	ENSG00000123165	31	0	0.00	34	15	30.61	-	-	-
C19orf44	0	genome.wustl.edu	37	19	16620384	16620384	+	Silent	SNP	G	G	A			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	19	16620384	16620384	G	A	SNP	C19orf44	ENST00000221671	human	ensembl	69_37n	+1	known	silent	c.1224	p.P408	0.000	NULL	NULL	-	no_errors	C19orf44	HGNC	ENSG00000105072	40	0	0.00	38	11	22.45	-	-	-
COLQ	0	genome.wustl.edu	37	3	15520859	15520859	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	3	15520859	15520859	G	A	SNP	COLQ	ENST00000383788	human	ensembl	69_37n	-1	known	missense	c.352	p.P118S	1.000	pfam_Collagen	pfam_Collagen,tigrfam_Myxo_disulph_rpt	-	no_errors	COLQ	HGNC	ENSG00000206561	39	0	0.00	27	15	35.71	-	-	-
CROCCP2	0	genome.wustl.edu	37	1	16957287	16957287	+	RNA	SNP	G	G	A			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	1	16957287	16957287	G	A	SNP	CROCCP2	ENST00000362058	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.044	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	11	0	0.00	11	4	26.67	-	-	-
CTTNBP2	0	genome.wustl.edu	37	7	117375424	117375426	+	In_Frame_Del	DEL	ATG	ATG	-			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	7	117375424	117375426	ATG	-	DEL	CTTNBP2	ENST00000160373	human	ensembl	69_37n	-1	known	in_frame_del	c.3587_3585	p.I1196in_frame_del	1.000:1.000:0.997	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063	30	0	0.00	36	5	12.20	-	-	-
DMXL1	0	genome.wustl.edu	37	5	118513861	118513861	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	5	118513861	118513861	G	T	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	+1	known	nonsense	c.7057	p.E2353*	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	41	0	0.00	51	7	12.07	-	-	-
FAN1	0	genome.wustl.edu	37	15	31197852	31197852	+	Missense_Mutation	SNP	A	A	T			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	15	31197852	31197852	A	T	SNP	FAN1	ENST00000362065	human	ensembl	69_37n	+1	known	missense	c.986	p.D329V	0.000	NULL	pfam_VRR_NUC,smart_Znf_Rad18_put	-	no_errors	FAN1	HGNC	ENSG00000198690	34	0	0.00	23	7	23.33	-	-	-
GPR123	0	genome.wustl.edu	37	10	134942831	134942831	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	10	134942831	134942831	C	T	SNP	GPR123	ENST00000392606	human	ensembl	69_37n	+1	putative	missense	c.1211	p.P404L	0.348	NULL	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	-	no_errors	GPR123	HGNC	ENSG00000197177	10	0	0.00	27	12	30.77	-	-	-
HMHA1	0	genome.wustl.edu	37	19	1080476	1080476	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	19	1080476	1080476	C	A	SNP	HMHA1	ENST00000313093	human	ensembl	69_37n	+1	known	missense	c.1842	p.H614Q	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448	59	0	0.00	64	12	15.79	-	-	-
KIAA0319L	0	genome.wustl.edu	37	1	35921805	35921806	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	1	35921805	35921806	-	A	INS	KIAA0319L	ENST00000325722	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1465_1464	p.T488fs	0.988:0.022	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319L	HGNC	ENSG00000142687	43	0	0.00	60	14	18.92	-	-	-
KIAA0528	0	genome.wustl.edu	37	12	22678546	22678546	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	12	22678546	22678546	C	A	SNP	KIAA0528	ENST00000333957	human	ensembl	69_37n	-1	known	missense	c.443	p.C148F	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	KIAA0528	HGNC	ENSG00000111731	18	0	0.00	20	9	31.03	-	-	-
KIR2DL2	0	genome.wustl.edu	37	GL000209.1	8628	8630	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	GL000209.1	8628	8630	TTC	-	DEL	KIR2DL2	ENST00000400875	human	ensembl	69_37n	+1	known	in_frame_del	c.37_39	p.F14in_frame_del	NULL	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2	-	no_errors	KIR2DL2	HGNC	ENSG00000215764	16	0	0.00	22	11	33.33	-	-	-
LRRK2	0	genome.wustl.edu	37	12	40643748	40643748	+	Splice_Site	SNP	G	G	A			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	12	40643748	40643748	G	A	SNP	LRRK2	ENST00000298910	human	ensembl	69_37n	+1	known	splice_site	c.958+1	e8+1	1.000	-	-	-	no_errors	LRRK2	HGNC	ENSG00000188906	29	0	0.00	28	10	26.32	-	-	-
MAP3K8	0	genome.wustl.edu	37	10	30736871	30736871	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	10	30736871	30736871	G	T	SNP	MAP3K8	ENST00000263056	human	ensembl	69_37n	+1	known	missense	c.497	p.C166F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K8	HGNC	ENSG00000107968	21	0	0.00	30	8	21.05	-	-	-
MYBPH	0	genome.wustl.edu	37	1	203140616	203140616	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	1	203140616	203140616	T	C	SNP	MYBPH	ENST00000255416	human	ensembl	69_37n	-1	known	missense	c.688	p.I230V	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYBPH	HGNC	ENSG00000133055	60	0	0.00	87	16	15.53	-	-	-
NOL6	0	genome.wustl.edu	37	9	33470121	33470121	+	Silent	SNP	C	C	T			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	9	33470121	33470121	C	T	SNP	NOL6	ENST00000297990	human	ensembl	69_37n	-1	known	silent	c.447	p.K149	0.999	NULL	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271	26	0	0.00	37	16	30.19	-	-	-
NOTCH2	0	genome.wustl.edu	37	1	120611960	120611960	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	1	120611960	120611960	C	T	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.61	p.A21T	0.990	pirsf_Notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	21	0	0.00	4	6	60.00	-	-	-
NRBF2	0	genome.wustl.edu	37	10	64913409	64913409	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	10	64913409	64913409	C	G	SNP	NRBF2	ENST00000277746	human	ensembl	69_37n	+1	known	missense	c.295	p.Q99E	0.991	pfam_DUF1875	pfam_DUF1875	-	no_errors	NRBF2	HGNC	ENSG00000148572	28	0	0.00	41	11	21.15	-	-	-
OR5M3	0	genome.wustl.edu	37	11	56237368	56237368	+	Silent	SNP	G	G	T			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	11	56237368	56237368	G	T	SNP	OR5M3	ENST00000312240	human	ensembl	69_37n	-1	known	silent	c.606	p.G202	0.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5M3	HGNC	ENSG00000174937	62	0	0.00	56	16	22.22	-	-	-
PACS1	0	genome.wustl.edu	37	11	65978677	65978677	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	11	65978677	65978677	C	T	SNP	PACS1	ENST00000320580	human	ensembl	69_37n	+1	known	missense	c.607	p.R203W	1.000	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS1	HGNC	ENSG00000175115	57	0	0.00	59	16	21.33	-	-	-
PARPBP	0	genome.wustl.edu	37	12	102548700	102548700	+	RNA	SNP	G	G	T			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	12	102548700	102548700	G	T	SNP	PARPBP	ENST00000541668	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.565	-	-	-	no_errors	PARPBP	HGNC	ENSG00000185480	24	0	0.00	17	3	14.29	-	-	-
PDCD4	0	genome.wustl.edu	37	10	112650361	112650361	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	10	112650361	112650361	G	C	SNP	PDCD4	ENST00000280154	human	ensembl	69_37n	+1	known	missense	c.923	p.G308A	1.000	superfamily_ARM-type_fold	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	-	no_errors	PDCD4	HGNC	ENSG00000150593	86	0	0.00	86	17	16.35	-	-	-
PHC3	0	genome.wustl.edu	37	3	169846622	169846622	+	Silent	SNP	G	G	T			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	3	169846622	169846622	G	T	SNP	PHC3	ENST00000495893	human	ensembl	69_37n	-1	known	silent	c.1638	p.G546	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC3	HGNC	ENSG00000173889	29	0	0.00	21	8	27.59	-	-	-
PIK3C2G	0	genome.wustl.edu	37	12	18435178	18435178	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	12	18435178	18435178	G	T	SNP	PIK3C2G	ENST00000538779	human	ensembl	69_37n	+1	known	nonsense	c.163	p.E55*	0.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	27	0	0.00	28	13	31.71	-	-	-
PRDM11	0	genome.wustl.edu	37	11	45230588	45230588	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	11	45230588	45230588	C	T	SNP	PRDM11	ENST00000534751	human	ensembl	69_37n	+1	putative	missense	c.608	p.P203L	1.000	smart_SANT/Myb	smart_SANT/Myb	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRDM11	HGNC	ENSG00000019485	12	0	0.00	11	9	45.00	-	-	-
QSOX1	0	genome.wustl.edu	37	1	180165578	180165578	+	Silent	SNP	T	T	C			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	1	180165578	180165578	T	C	SNP	QSOX1	ENST00000367602	human	ensembl	69_37n	+1	known	silent	c.1650	p.A550	0.000	NULL	pfam_Evr1_Alr,pfam_Thioredoxin_domain,superfamily_Evr1_Alr,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260	50	0	0.00	75	14	15.73	-	-	-
RAB2A	0	genome.wustl.edu	37	8	61533234	61533234	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	8	61533234	61533234	C	T	SNP	RAB2A	ENST00000529579	human	ensembl	69_37n	+1	novel	nonsense	c.433	p.Q145*	1.000	smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB2A	HGNC	ENSG00000104388	35	0	0.00	59	20	25.32	-	-	-
SVEP1	0	genome.wustl.edu	37	9	113189940	113189940	+	Missense_Mutation	SNP	A	A	T			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	9	113189940	113189940	A	T	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.5906	p.I1969N	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	55	0	0.00	49	19	27.94	-	-	-
TAS2R42	0	genome.wustl.edu	37	12	11338712	11338712	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	12	11338712	11338712	A	G	SNP	TAS2R42	ENST00000334266	human	ensembl	69_37n	-1	known	missense	c.832	p.S278P	0.025	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	TAS2R42	HGNC	ENSG00000186136	24	0	0.00	18	7	28.00	-	-	-
THEM5	0	genome.wustl.edu	37	1	151819755	151819755	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	1	151819755	151819755	C	-	DEL	THEM5	ENST00000453881	human	ensembl	69_37n	-1	known	frame_shift_del	c.624	p.P209fs	0.108	NULL	pfam_Thioestr_supf	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	THEM5	HGNC	ENSG00000196407	20	0	0.00	31	6	15.38	-	-	-
TPPP3	0	genome.wustl.edu	37	16	67424196	67424196	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	16	67424196	67424196	G	A	SNP	TPPP3	ENST00000290942	human	ensembl	69_37n	-1	known	missense	c.412	p.R138C	1.000	pfam_P25-alpha	pfam_P25-alpha	-	no_errors	TPPP3	HGNC	ENSG00000159713	49	0	0.00	32	19	37.25	-	-	-
ZNF43	0	genome.wustl.edu	37	19	22001917	22001917	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	19	22001917	22001917	T	C	SNP	ZNF43	ENST00000354959	human	ensembl	69_37n	-1	known	missense	c.110	p.Y37C	0.999	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521	42	0	0.00	21	6	21.43	-	-	-
ZNF655	0	genome.wustl.edu	37	7	99170231	99170231	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A3QP-01A-11D-A22X-09	TCGA-AC-A3QP-10B-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5c97a092-5cc3-4ed0-ab88-d2b53a1cb98e	22971a93-3f45-418d-a4da-5f3352316d34	7	99170231	99170231	A	G	SNP	ZNF655	ENST00000424881	human	ensembl	69_37n	+1	known	missense	c.605	p.N202S	0.344	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF655	HGNC	ENSG00000197343	34	0	0.00	34	4	10.53	-	-	-
