Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AACS	0	genome.wustl.edu	37	12	125561123	125561123	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	12	125561123	125561123	C	G	SNP	AACS	ENST00000316519	human	ensembl	69_37n	+1	known	missense	c.324	p.H108Q	0.876	pfam_Acyl-CoA_synth_DUF3448,tigrfam_Acac_CoA_synth	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760	151	0	0.00	118	22	15.71	-	-	-
ALDH2	0	genome.wustl.edu	37	12	112229926	112229927	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	12	112229926	112229927	-	G	INS	ALDH2	ENST00000261733	human	ensembl	69_37n	+1	known	frame_shift_ins	c.857_858	p.K289fs	1.000:0.991	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH2	HGNC	ENSG00000111275	34	0	0.00	35	4	10.26	-	-	-
ARHGEF2	0	genome.wustl.edu	37	1	155920838	155920838	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	155920838	155920838	C	G	SNP	ARHGEF2	ENST00000368315	human	ensembl	69_37n	-1	known	missense	c.2488	p.A830P	0.999	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584	8	0	0.00	18	5	21.74	-	-	-
ATP10B	0	genome.wustl.edu	37	5	160047558	160047558	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	5	160047558	160047558	G	T	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.2212	p.L738I	0.910	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	39	0	0.00	49	21	30.00	-	-	-
ATP10B	0	genome.wustl.edu	37	5	160047559	160047559	+	Silent	SNP	T	T	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	5	160047559	160047559	T	A	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	silent	c.2211	p.T737	0.001	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	40	0	0.00	50	21	29.58	-	-	-
BIRC6	0	genome.wustl.edu	37	2	32702619	32702619	+	Missense_Mutation	SNP	T	T	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	32702619	32702619	T	A	SNP	BIRC6	ENST00000421745	human	ensembl	69_37n	+1	known	missense	c.7036	p.C2346S	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	179	0	0.00	135	49	26.63	-	-	-
C10orf12	0	genome.wustl.edu	37	10	98744677	98744677	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	10	98744677	98744677	C	T	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	+1	known	missense	c.3530	p.A1177V	0.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	143	0	0.00	99	15	13.04	-	-	-
CACNA1E	0	genome.wustl.edu	37	1	181688962	181688962	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	181688962	181688962	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	+1	known	nonsense	c.1714	p.R572*	0.998	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	229	0	0.00	112	103	47.91	-	-	-
CLCN4	0	genome.wustl.edu	37	X	10181872	10181872	+	Silent	SNP	C	C	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	X	10181872	10181872	C	T	SNP	CLCN4	ENST00000380833	human	ensembl	69_37n	+1	known	silent	c.1728	p.I576	1.000	superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-4	-	no_errors	CLCN4	HGNC	ENSG00000073464	107	0	0.00	57	20	25.97	-	-	-
COX4I2	0	genome.wustl.edu	37	20	30227901	30227901	+	Splice_Site	SNP	G	G	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	20	30227901	30227901	G	A	SNP	COX4I2	ENST00000376075	human	ensembl	69_37n	+1	known	splice_site	c.247+1	e2+1	1.000	-	-	-	no_errors	COX4I2	HGNC	ENSG00000131055	35	0	0.00	25	10	28.57	-	-	-
CSMD2	0	genome.wustl.edu	37	1	34312489	34312489	+	Nonsense_Mutation	SNP	G	G	C			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	34312489	34312489	G	C	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	nonsense	c.1029	p.Y343*	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	79	0	0.00	152	21	12.14	-	-	-
CXCR3	0	genome.wustl.edu	37	X	70836243	70836243	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	X	70836243	70836243	G	T	SNP	CXCR3	ENST00000373691	human	ensembl	69_37n	-1	known	missense	c.1220	p.T407N	1.000	prints_Chemokine_CXCR3	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810	49	0	0.00	54	8	12.90	-	-	-
DOCK10	0	genome.wustl.edu	37	2	225727415	225727415	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	225727415	225727415	C	T	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	missense	c.1651	p.G551R	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	284	0	0.00	76	20	20.83	-	-	-
DOCK5	0	genome.wustl.edu	37	8	25261154	25261154	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	8	25261154	25261154	G	T	SNP	DOCK5	ENST00000276440	human	ensembl	69_37n	+1	known	missense	c.5007	p.R1669S	0.960	NULL	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459	135	0	0.00	63	51	44.74	-	-	-
DYSF	0	genome.wustl.edu	37	2	71738993	71738993	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	71738993	71738993	C	-	DEL	DYSF	ENST00000413539	human	ensembl	69_37n	+1	known	frame_shift_del	c.399	p.P134fs	0.997	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	52	0	0.00	29	17	36.96	-	-	-
DYSF	0	genome.wustl.edu	37	2	71739000	71739001	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	71739000	71739001	-	A	INS	DYSF	ENST00000413539	human	ensembl	69_37n	+1	known	frame_shift_ins	c.406_407	p.P136fs	0.001:0.019	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC	ENSG00000135636	52	0	0.00	30	16	34.78	-	-	-
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	RNA	INS	-	-	GCA			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	9	141107536	141107537	-	GCA	INS	FAM157B	ENST00000446912	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.033:0.036	-	-	-	no_errors	FAM157B	HGNC	ENSG00000233013	30	0	0.00	20	7	25.93	-	-	-
FAM5C	0	genome.wustl.edu	37	1	190067727	190067727	+	Silent	SNP	A	A	G			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	190067727	190067727	A	G	SNP	FAM5C	ENST00000367462	human	ensembl	69_37n	-1	known	silent	c.1722	p.N574	0.997	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5C	HGNC	ENSG00000162670	102	1	0.97	113	28	19.86	-	-	-
GLTSCR1	0	genome.wustl.edu	37	19	48197890	48197891	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	19	48197890	48197891	-	C	INS	GLTSCR1	ENST00000396720	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2802_2803	p.P937fs	0.044:0.226	NULL	NULL	-	no_errors	GLTSCR1	HGNC	ENSG00000063169	10	0	0.00	4	2	33.33	-	-	-
HDAC6	0	genome.wustl.edu	37	X	48674948	48674948	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	X	48674948	48674948	G	T	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	+1	known	missense	c.1741	p.D581Y	0.998	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	110	0	0.00	86	13	13.13	-	-	-
HECTD4	0	genome.wustl.edu	37	12	112600859	112600860	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	12	112600859	112600860	-	G	INS	HECTD4	ENST00000377560	human	ensembl	69_37n	-1	known	frame_shift_ins	c.12591_12590	p.D4198fs	0.555:1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064	36	0	0.00	44	5	10.20	-	-	-
HIVEP1	0	genome.wustl.edu	37	6	12125489	12125489	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	6	12125489	12125489	C	T	SNP	HIVEP1	ENST00000379388	human	ensembl	69_37n	+1	known	missense	c.5461	p.P1821S	0.993	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	179	0	0.00	75	23	23.23	-	-	-
IFT140	0	genome.wustl.edu	37	16	1561044	1561045	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	16	1561044	1561045	-	C	INS	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4290_4289	p.L1431fs	0.000:0.968	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	11	0	0.00	29	15	34.09	-	-	-
IFT88	0	genome.wustl.edu	37	13	21170288	21170289	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	13	21170288	21170289	-	T	INS	IFT88	ENST00000319980	human	ensembl	69_37n	+1	known	frame_shift_ins	c.427_426	p.E145fs	1.000:0.996	NULL	pfam_TPR-1,pfam_TPR_2,pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFT88	HGNC	ENSG00000032742	140	0	0.00	17	2	10.53	-	-	-
ITGA4	0	genome.wustl.edu	37	2	182339924	182339924	+	Silent	SNP	G	G	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	182339924	182339924	G	A	SNP	ITGA4	ENST00000397033	human	ensembl	69_37n	+1	known	silent	c.465	p.K155	0.984	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	228	0	0.00	64	19	22.89	-	-	-
KCNN3	0	genome.wustl.edu	37	1	154842243	154842243	+	Silent	SNP	A	A	C			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	154842243	154842243	A	C	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	silent	c.198	p.L66	0.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	12	0	0.00	55	13	19.12	-	-	-
KCNN3	0	genome.wustl.edu	37	1	154842244	154842244	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	154842244	154842244	A	T	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	missense	c.197	p.L66H	0.166	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	12	0	0.00	54	12	17.91	-	-	-
LRRC37A3	0	genome.wustl.edu	37	17	62892271	62892271	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	17	62892271	62892271	A	T	SNP	LRRC37A3	ENST00000319651	human	ensembl	69_37n	-1	known	missense	c.1105	p.S369T	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809	15	0	0.00	12	6	33.33	-	-	-
LRRC7	0	genome.wustl.edu	37	1	70291446	70291446	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	70291446	70291446	C	T	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	+1	known	missense	c.323	p.P108L	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	209	0	0.00	37	7	15.91	-	-	-
LRRC7	0	genome.wustl.edu	37	1	70504659	70504659	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	70504659	70504659	G	C	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	+1	known	missense	c.3038	p.S1013T	0.833	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	61	0	0.00	56	7	11.11	-	-	-
MAGEL2	0	genome.wustl.edu	37	15	23890432	23890432	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	15	23890432	23890432	C	T	SNP	MAGEL2	ENST00000532292	human	ensembl	69_37n	-1	known	missense	c.649	p.A217T	0.005	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585	71	0	0.00	15	7	31.82	-	-	-
MAML2	0	genome.wustl.edu	37	11	95825407	95825407	+	Silent	SNP	C	C	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	11	95825407	95825407	C	T	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	silent	c.1788	p.Q596	0.003	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	169	1	0.59	148	37	19.89	-	-	-
MAP3K6	0	genome.wustl.edu	37	1	27685238	27685239	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	27685238	27685239	-	G	INS	MAP3K6	ENST00000357582	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2545_2544	p.F848fs	1.000:0.991	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K6	HGNC	ENSG00000142733	58	0	0.00	40	5	11.11	-	-	-
MBNL1	0	genome.wustl.edu	37	3	152177106	152177106	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	3	152177106	152177106	C	-	DEL	MBNL1	ENST00000282486	human	ensembl	69_37n	+1	known	frame_shift_del	c.1157	p.Q387fs	1.000	NULL	smart_Znf_CCCH	-	no_errors	MBNL1	HGNC	ENSG00000152601	91	0	0.00	15	2	11.76	-	-	-
MIR524	0	genome.wustl.edu	37	19	54214334	54214334	+	RNA	SNP	G	G	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	19	54214334	54214334	G	A	SNP	MIR524	ENST00000385242	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	MIR524	HGNC	ENSG00000207977	247	0	0.00	152	28	15.56	-	-	-
MLPH	0	genome.wustl.edu	37	2	238449564	238449564	+	Missense_Mutation	SNP	A	A	G			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	238449564	238449564	A	G	SNP	MLPH	ENST00000432475	human	ensembl	69_37n	+1	known	missense	c.205	p.S69G	0.000	pfam_Myelin-assoc_OBP	pfam_Myelin-assoc_OBP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MLPH	HGNC	ENSG00000115648	12	0	0.00	19	4	17.39	-	-	-
MSN	0	genome.wustl.edu	37	X	64958834	64958834	+	Silent	SNP	C	C	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	X	64958834	64958834	C	T	SNP	MSN	ENST00000360270	human	ensembl	69_37n	+1	known	silent	c.1347	p.A449	0.987	pirsf_ERM,pfam_ERM_C	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	MSN	HGNC	ENSG00000147065	499	0	0.00	594	107	15.24	-	-	-
MUC4	0	genome.wustl.edu	37	3	195513420	195513420	+	Silent	SNP	G	G	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	3	195513420	195513420	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.5031	p.H1677	0.010	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	31	0	0.00	71	12	14.46	-	-	-
NTRK3	0	genome.wustl.edu	37	15	88576185	88576185	+	Silent	SNP	G	G	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	15	88576185	88576185	G	A	SNP	NTRK3	ENST00000360948	human	ensembl	69_37n	-1	known	silent	c.1488	p.A496	0.054	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538	108	0	0.00	152	30	16.48	-	-	-
NUP205	0	genome.wustl.edu	37	7	135333164	135333164	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	7	135333164	135333164	G	A	SNP	NUP205	ENST00000285968	human	ensembl	69_37n	+1	known	missense	c.5899	p.A1967T	0.959	NULL	pfam_DUF3414	-	no_errors	NUP205	HGNC	ENSG00000155561	197	0	0.00	71	12	14.46	-	-	-
OXR1	0	genome.wustl.edu	37	8	107726212	107726212	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	8	107726212	107726212	A	T	SNP	OXR1	ENST00000442977	human	ensembl	69_37n	+1	known	missense	c.1958	p.E653V	1.000	NULL	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830	108	0	0.00	28	11	28.21	-	-	-
PDE3A	0	genome.wustl.edu	37	12	20799761	20799761	+	Silent	SNP	C	C	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	12	20799761	20799761	C	T	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	+1	known	silent	c.2442	p.Y814	0.203	smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	246	0	0.00	110	26	19.12	-	-	-
PER3	0	genome.wustl.edu	37	1	7844971	7844972	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	7844971	7844972	-	G	INS	PER3	ENST00000361923	human	ensembl	69_37n	+1	known	frame_shift_ins	c.34_35	p.A14fs	0.000:0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	12	0	0.00	11	2	15.38	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	92	0	0.00	79	31	27.93	-	-	-
PIWIL1	0	genome.wustl.edu	37	12	130831527	130831527	+	Silent	SNP	G	G	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	12	130831527	130831527	G	A	SNP	PIWIL1	ENST00000245255	human	ensembl	69_37n	+1	known	silent	c.573	p.V191	1.000	superfamily_PAZ	pfam_Piwi,pfam_PAZ,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	343	0	0.00	86	28	24.56	-	-	-
PPM1B	0	genome.wustl.edu	37	2	44457659	44457659	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	44457659	44457659	G	A	SNP	PPM1B	ENST00000282412	human	ensembl	69_37n	+1	known	missense	c.1242	p.M414I	1.000	NULL	pfam_PP2C-like,pfam_PP2C_C,superfamily_PP2C-like,superfamily_PP2C_C,smart_PP2C-like	-	no_errors	PPM1B	HGNC	ENSG00000138032	145	0	0.00	63	25	28.41	-	-	-
PSIP1	0	genome.wustl.edu	37	9	15490113	15490114	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	9	15490113	15490114	-	A	INS	PSIP1	ENST00000380733	human	ensembl	69_37n	-1	known	frame_shift_ins	c.159_158	p.L53fs	1.000:1.000	pfam_PWWP,smart_PWWP,pfscan_PWWP	pfam_LEDGF,pfam_PWWP,smart_PWWP,prints_Treacle-like_TCS,pfscan_PWWP	-	no_errors	PSIP1	HGNC	ENSG00000164985	267	0	0.00	44	27	38.03	-	-	-
RNF222	0	genome.wustl.edu	37	17	8296596	8296596	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	17	8296596	8296596	G	A	SNP	RNF222	ENST00000344001	human	ensembl	69_37n	-1	known	missense	c.184	p.P62S	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF222	HGNC	ENSG00000189051	15	0	0.00	17	8	32.00	-	-	-
SCRIB	0	genome.wustl.edu	37	8	144891156	144891156	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	8	144891156	144891156	C	-	DEL	SCRIB	ENST00000320476	human	ensembl	69_37n	-1	known	frame_shift_del	c.1738	p.D580fs	0.044	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900	43	0	0.00	24	37	59.68	-	-	-
SEC31B	0	genome.wustl.edu	37	10	102247412	102247412	+	Silent	SNP	C	C	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	10	102247412	102247412	C	T	SNP	SEC31B	ENST00000370345	human	ensembl	69_37n	-1	known	silent	c.3501	p.L1167	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826	31	0	0.00	114	15	11.63	-	-	-
SEMA4C	0	genome.wustl.edu	37	2	97526846	97526847	+	In_Frame_Ins	INS	-	-	GAG			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	2	97526846	97526847	-	GAG	INS	SEMA4C	ENST00000305476	human	ensembl	69_37n	-1	known	in_frame_ins	c.2019_2018	p.674in_frame_insS	0.625:0.993	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4C	HGNC	ENSG00000168758	9	0	0.00	5	3	37.50	-	-	-
SETD5	0	genome.wustl.edu	37	3	9484993	9484993	+	Missense_Mutation	SNP	T	T	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	3	9484993	9484993	T	A	SNP	SETD5	ENST00000402198	human	ensembl	69_37n	+1	known	missense	c.1079	p.V360E	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137	95	0	0.00	44	16	26.67	-	-	-
SLC1A2	0	genome.wustl.edu	37	11	35327749	35327749	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	11	35327749	35327749	G	A	SNP	SLC1A2	ENST00000278379	human	ensembl	69_37n	-1	known	missense	c.602	p.P201L	0.020	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A2	HGNC	ENSG00000110436	140	1	0.71	156	85	35.27	-	-	-
SLC27A1	0	genome.wustl.edu	37	19	17608208	17608208	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	19	17608208	17608208	C	T	SNP	SLC27A1	ENST00000252595	human	ensembl	69_37n	+1	known	missense	c.1141	p.R381C	0.284	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A1	HGNC	ENSG00000130304	36	0	0.00	29	15	34.09	-	-	-
TMEM132D	0	genome.wustl.edu	37	12	129559224	129559224	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	12	129559224	129559224	C	A	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	missense	c.2496	p.Q832H	0.001	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	346	2	0.57	209	49	18.99	-	-	-
TOM1	0	genome.wustl.edu	37	22	35695926	35695926	+	Missense_Mutation	SNP	A	A	G			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	22	35695926	35695926	A	G	SNP	TOM1	ENST00000411850	human	ensembl	69_37n	+1	known	missense	c.5	p.D2G	1.000	superfamily_ENTH_VHS,pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1	HGNC	ENSG00000100284	25	0	0.00	32	12	27.27	-	-	-
TSC22D1	0	genome.wustl.edu	37	13	45148362	45148362	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	13	45148362	45148362	G	T	SNP	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	missense	c.1849	p.P617T	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	66	0	0.00	35	9	20.45	-	-	-
TSC22D1	0	genome.wustl.edu	37	13	45150041	45150042	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	13	45150041	45150042	-	G	INS	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	frame_shift_ins	c.170_169	p.D57fs	1.000:1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	34	0	0.00	22	19	46.34	-	-	-
TYK2	0	genome.wustl.edu	37	19	10463112	10463113	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	19	10463112	10463113	-	G	INS	TYK2	ENST00000264818	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3316_3315	p.T1105fs	0.001:0.001	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397	14	0	0.00	16	3	15.79	-	-	-
WNT9A	0	genome.wustl.edu	37	1	228111953	228111954	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	1	228111953	228111954	-	C	INS	WNT9A	ENST00000272164	human	ensembl	69_37n	-1	known	frame_shift_ins	c.501_500	p.C168fs	1.000:1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt14	-	no_errors	WNT9A	HGNC	ENSG00000143816	23	0	0.00	23	3	11.54	-	-	-
ZNF69	0	genome.wustl.edu	37	19	12016540	12016540	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	19	12016540	12016540	C	T	SNP	ZNF69	ENST00000429654	human	ensembl	69_37n	+1	known	missense	c.1328	p.P443L	0.993	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF69	HGNC	ENSG00000198429	108	0	0.00	101	15	12.93	-	-	-
ZNF831	0	genome.wustl.edu	37	20	57768868	57768868	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A0J5-01A-11W-A050-09	TCGA-AO-A0J5-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93ae73f6-c355-47be-a355-faa78c0632d4	7a28e38f-8fc4-4ac7-974c-03925fab2da6	20	57768868	57768868	C	A	SNP	ZNF831	ENST00000371030	human	ensembl	69_37n	+1	novel	missense	c.2794	p.L932M	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	30	0	0.00	15	7	31.82	-	-	-
