Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCF2	0	genome.wustl.edu	37	7	150921061	150921061	+	Silent	SNP	C	C	T			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	7	150921061	150921061	C	T	SNP	ABCF2	ENST00000222388	human	ensembl	69_37n	-1	known	silent	c.507	p.R169	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF2	HGNC	ENSG00000033050	55	0	0.00	104	24	18.75	-	-	-
ANKRD26P1	0	genome.wustl.edu	37	16	46597801	46597802	+	RNA	INS	-	-	T			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	16	46597801	46597802	-	T	INS	ANKRD26P1	ENST00000566201	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.945:0.029	-	-	-	no_errors	ANKRD26P1	HGNC	ENSG00000261239	15	0	0.00	9	2	18.18	-	-	-
ASUN	0	genome.wustl.edu	37	12	27069033	27069033	+	Missense_Mutation	SNP	T	T	C			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	12	27069033	27069033	T	C	SNP	ASUN	ENST00000261191	human	ensembl	69_37n	-1	known	missense	c.1150	p.I384V	1.000	pfam_Cell_cycle_regulator_Mat89Bb	pfam_Cell_cycle_regulator_Mat89Bb	-	no_errors	ASUN	HGNC	ENSG00000064102	66	0	0.00	52	10	16.13	-	-	-
CABIN1	0	genome.wustl.edu	37	22	24480534	24480534	+	Silent	SNP	G	G	A			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	22	24480534	24480534	G	A	SNP	CABIN1	ENST00000263119	human	ensembl	69_37n	+1	known	silent	c.2913	p.V971	1.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	131	0	0.00	136	29	17.58	-	-	-
EDN1	0	genome.wustl.edu	37	6	12296218	12296218	+	Missense_Mutation	SNP	T	T	A			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	6	12296218	12296218	T	A	SNP	EDN1	ENST00000379375	human	ensembl	69_37n	+1	known	missense	c.557	p.V186D	1.000	NULL	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN1	HGNC	ENSG00000078401	299	0	0.00	246	47	16.04	-	-	-
EPHX1	0	genome.wustl.edu	37	1	226026417	226026417	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	1	226026417	226026417	C	T	SNP	EPHX1	ENST00000272167	human	ensembl	69_37n	+1	known	missense	c.427	p.P143S	0.995	pfam_Epoxide_hydro_N,pirsf_Epoxide_hydrolase	pfam_Epoxide_hydro_N,pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase,prints_Epox_hydrolase-like	-	no_errors	EPHX1	HGNC	ENSG00000143819	131	0	0.00	186	37	16.52	-	-	-
ETS2	0	genome.wustl.edu	37	21	40186843	40186843	+	Missense_Mutation	SNP	T	T	C			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	21	40186843	40186843	T	C	SNP	ETS2	ENST00000360214	human	ensembl	69_37n	+1	known	missense	c.443	p.L148P	1.000	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,pirsf_Transforming_factor_C-ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS2	HGNC	ENSG00000157557	91	0	0.00	69	27	28.12	-	-	-
FAM136A	0	genome.wustl.edu	37	2	70524439	70524439	+	Silent	SNP	G	G	A			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	2	70524439	70524439	G	A	SNP	FAM136A	ENST00000037869	human	ensembl	69_37n	-1	known	silent	c.399	p.L133	0.812	pfam_DUF842_euk	pfam_DUF842_euk	-	no_errors	FAM136A	HGNC	ENSG00000035141	110	0	0.00	87	26	23.01	-	-	-
FGFR3	0	genome.wustl.edu	37	4	1806180	1806181	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	4	1806180	1806181	-	C	INS	FGFR3	ENST00000340107	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1205_1206	p.K405fs	0.996:0.987	pirsf_Tyr_kinase_fibroblast_GF_rcpt	pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FGFR3	HGNC	ENSG00000068078	20	0	0.00	17	3	15.00	-	-	-
GNAZ	0	genome.wustl.edu	37	22	23438487	23438488	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	22	23438487	23438488	-	G	INS	GNAZ	ENST00000248996	human	ensembl	69_37n	+1	known	frame_shift_ins	c.605_606	p.Q205fs	1.000:1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266	33	0	0.00	43	6	12.24	-	-	-
HAL	0	genome.wustl.edu	37	12	96380925	96380925	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	12	96380925	96380925	C	G	SNP	HAL	ENST00000261208	human	ensembl	69_37n	-1	known	missense	c.971	p.S324T	1.000	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	-	no_errors	HAL	HGNC	ENSG00000084110	114	0	0.00	113	16	12.40	-	-	-
HLA-C	0	genome.wustl.edu	37	6	31239010	31239010	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	6	31239010	31239010	G	A	SNP	HLA-C	ENST00000415537	human	ensembl	69_37n	-1	novel	missense	c.457	p.P153S	1.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-C	HGNC	ENSG00000204525	15	0	0.00	18	6	25.00	-	-	-
IGDCC4	0	genome.wustl.edu	37	15	65681239	65681240	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	15	65681239	65681240	-	G	INS	IGDCC4	ENST00000352385	human	ensembl	69_37n	-1	novel	frame_shift_ins	c.2614_2613	p.T871fs	0.007:0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC4	HGNC	ENSG00000103742	23	0	0.00	25	4	13.79	-	-	-
MAGED2	0	genome.wustl.edu	37	X	54841196	54841197	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	X	54841196	54841197	-	T	INS	MAGED2	ENST00000218439	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1374_1375	p.A459fs	1.000:1.000	pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED2	HGNC	ENSG00000102316	90	0	0.00	70	16	18.60	-	-	-
MAP2K4	0	genome.wustl.edu	37	17	12044530	12044530	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	17	12044530	12044530	C	G	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	+1	known	missense	c.1186	p.L396V	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	189	0	0.00	123	26	17.45	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56183347	56183347	+	Silent	SNP	G	G	A			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	5	56183347	56183347	G	A	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	silent	c.4257	p.E1419	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	302	0	0.00	262	58	18.12	-	-	-
MLL3	0	genome.wustl.edu	37	7	151945622	151945622	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	7	151945622	151945622	C	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.1897	p.E633fs	0.982	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	196	0	0.00	148	33	17.93	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1266173	1266173	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	11	1266173	1266173	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	missense	c.8072	p.P2691L	0.011	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	22	0	0.00	22	4	15.38	-	-	-
NAA30	0	genome.wustl.edu	37	14	57858091	57858092	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	14	57858091	57858092	CT	-	DEL	NAA30	ENST00000556492	human	ensembl	69_37n	+1	known	frame_shift_del	c.416_417	p.H140fs	0.911:0.880	NULL	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA30	HGNC	ENSG00000139977	32	0	0.00	15	21	58.33	-	-	-
NOP9	0	genome.wustl.edu	37	14	24769173	24769173	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	14	24769173	24769173	C	-	DEL	NOP9	ENST00000267425	human	ensembl	69_37n	+1	known	frame_shift_del	c.13	p.P5fs	0.996	NULL	superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt	-	no_errors	NOP9	HGNC	ENSG00000196943	17	0	0.00	15	2	11.76	-	-	-
PEX2	0	genome.wustl.edu	37	8	77895511	77895511	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	8	77895511	77895511	C	T	SNP	PEX2	ENST00000357039	human	ensembl	69_37n	-1	known	missense	c.904	p.V302I	1.000	NULL	pfam_Pex_N,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PEX2	HGNC	ENSG00000164751	310	0	0.00	295	61	17.13	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	3	178928079	178928079	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1357	p.E453K	1.000	pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	135	0	0.00	135	38	21.97	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	88	0	0.00	64	19	22.89	-	-	-
PIPSL	0	genome.wustl.edu	37	10	95718375	95718377	+	RNA	DEL	TTC	TTC	-			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	10	95718375	95718377	TTC	-	DEL	PIPSL	ENST00000480546	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.070:0.070:0.070	-	-	-	no_errors	PIPSL	HGNC	ENSG00000180764	13	0	0.00	3	2	40.00	-	-	-
PKHD1	0	genome.wustl.edu	37	6	51944778	51944778	+	Silent	SNP	G	G	A			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	6	51944778	51944778	G	A	SNP	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	silent	c.310	p.L104	0.001	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	241	0	0.00	144	34	19.10	-	-	-
POTEM	0	genome.wustl.edu	37	14	20010197	20010197	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	14	20010197	20010197	C	T	SNP	POTEM	ENST00000547848	human	ensembl	69_37n	-1	known	missense	c.961	p.V321I	0.063	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEM	HGNC	ENSG00000187537	18	0	0.00	18	5	21.74	-	-	-
RNF14	0	genome.wustl.edu	37	5	141359713	141359714	+	In_Frame_Ins	INS	-	-	AGG			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	5	141359713	141359714	-	AGG	INS	RNF14	ENST00000347642	human	ensembl	69_37n	+1	known	in_frame_ins	c.860_861	p.288in_frame_insG	1.000:0.980	NULL	pfam_RWD-domain,pfam_Znf_C6HC,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_C6HC,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF14	HGNC	ENSG00000013561	86	0	0.00	98	18	15.52	-	-	-
TNS4	0	genome.wustl.edu	37	17	38643408	38643408	+	Silent	SNP	G	G	T			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	17	38643408	38643408	G	T	SNP	TNS4	ENST00000254051	human	ensembl	69_37n	-1	known	silent	c.1168	p.R390	0.019	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746	82	0	0.00	79	22	21.78	-	-	-
ZNF292	0	genome.wustl.edu	37	6	87967879	87967879	+	Missense_Mutation	SNP	A	A	G			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	6	87967879	87967879	A	G	SNP	ZNF292	ENST00000369577	human	ensembl	69_37n	+1	known	missense	c.4532	p.H1511R	0.990	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	117	0	0.00	68	22	24.44	-	-	-
ZNF692	0	genome.wustl.edu	37	1	249151656	249151656	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JF-01A-11W-A071-09	TCGA-AO-A0JF-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	191caa1a-5ab8-4db5-b42a-f1c5964b0b0d	58109f2e-3c8d-4313-bc3e-1de6c5b245c4	1	249151656	249151656	C	T	SNP	ZNF692	ENST00000477070	human	ensembl	69_37n	-1	known	missense	c.41	p.C14Y	0.997	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZNF692	HGNC	ENSG00000171163	38	0	0.00	68	13	16.05	-	-	-
